AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene056487


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056487.t1 MTR_8g070095 97.179 319 9 0 1 319 1 319 0.0 639
MS.gene056487.t1 MTR_8g070115 81.931 321 50 3 1 319 1 315 0.0 531
MS.gene056487.t1 MTR_4g021350 71.160 319 86 3 1 319 1 313 9.64e-160 448
MS.gene056487.t1 MTR_4g021350 72.165 291 75 3 1 291 1 285 7.16e-144 407
MS.gene056487.t1 MTR_4g021450 64.669 317 97 3 2 318 3 304 1.76e-140 399
MS.gene056487.t1 MTR_4g021410 64.669 317 97 3 2 318 3 304 1.92e-140 399
MS.gene056487.t1 MTR_7g063580 63.492 315 108 3 6 319 46 354 1.37e-136 391
MS.gene056487.t1 MTR_4g021410 65.108 278 84 2 41 318 3 267 4.13e-123 354
MS.gene056487.t1 MTR_4g021410 63.900 241 74 2 78 318 1 228 1.10e-100 295
MS.gene056487.t1 MTR_4g021450 63.071 241 76 2 78 318 1 228 2.75e-99 292
MS.gene056487.t1 MTR_4g072320 46.645 313 156 5 10 319 11 315 4.73e-91 274
MS.gene056487.t1 MTR_4g072350 46.645 313 160 5 10 318 11 320 1.58e-87 265
MS.gene056487.t1 MTR_4g036845 41.587 315 172 4 10 319 8 315 7.50e-86 261
MS.gene056487.t1 MTR_4g072360 45.048 313 165 5 10 318 11 320 1.28e-85 260
MS.gene056487.t1 MTR_4g021450 65.385 182 61 1 137 318 6 185 1.83e-84 253
MS.gene056487.t1 MTR_6g073110 40.439 319 183 5 2 316 3 318 1.95e-79 244
MS.gene056487.t1 MTR_7g070500 44.268 314 164 7 8 318 15 320 2.96e-79 244
MS.gene056487.t1 MTR_0374s0050 39.806 309 171 5 14 318 18 315 7.64e-75 233
MS.gene056487.t1 MTR_3g083130 39.869 306 172 4 15 318 20 315 1.54e-71 224
MS.gene056487.t1 MTR_7g070500 44.523 283 148 5 8 289 15 289 1.96e-70 221
MS.gene056487.t1 MTR_4g072060 42.199 282 149 5 10 281 5 282 3.89e-67 213
MS.gene056487.t1 MTR_5g097900 42.606 284 160 2 15 297 19 300 1.10e-65 209
MS.gene056487.t1 MTR_5g097910 42.606 284 160 2 15 297 19 300 1.43e-65 209
MS.gene056487.t1 MTR_5g097940 42.606 284 160 2 15 297 19 300 1.43e-65 209
MS.gene056487.t1 MTR_6g072650 40.667 150 64 3 171 318 10 136 1.11e-30 113
MS.gene056487.t1 MTR_6g072710 40.708 113 65 1 189 299 1 113 5.10e-24 94.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene056487.t1 AT2G37770 76.012 321 69 3 1 319 1 315 5.66e-179 497
MS.gene056487.t1 AT2G37790 73.520 321 76 4 1 319 1 314 1.22e-171 478
MS.gene056487.t1 AT3G53880 68.224 321 94 4 1 319 1 315 8.79e-154 433
MS.gene056487.t1 AT2G37760 65.109 321 100 3 1 319 1 311 3.42e-151 427
MS.gene056487.t1 AT2G37760 65.109 321 100 3 1 319 1 311 3.42e-151 427
MS.gene056487.t1 AT2G37760 66.330 297 88 3 1 295 1 287 1.88e-140 399
MS.gene056487.t1 AT2G37760 66.330 297 88 3 1 295 1 287 1.88e-140 399
MS.gene056487.t1 AT2G37760 66.780 295 86 3 1 293 1 285 1.99e-140 399
MS.gene056487.t1 AT3G53880 68.027 294 86 4 1 292 1 288 5.50e-138 393
MS.gene056487.t1 AT2G37760 66.288 264 83 2 58 319 6 265 3.30e-124 357
MS.gene056487.t1 AT2G37760 66.288 264 83 2 58 319 6 265 3.30e-124 357
MS.gene056487.t1 AT2G37770 74.286 210 48 2 1 210 1 204 6.55e-110 321
MS.gene056487.t1 AT5G01670 45.141 319 164 7 3 318 11 321 4.10e-90 272
MS.gene056487.t1 AT5G62420 42.902 317 166 5 10 319 8 316 8.46e-86 261
MS.gene056487.t1 AT5G01670 41.618 346 164 8 3 318 11 348 2.76e-84 258
MS.gene056487.t1 AT2G21250 41.844 282 150 5 10 281 5 282 1.27e-73 229
MS.gene056487.t1 AT2G21260 40.426 282 154 5 10 281 5 282 5.19e-72 225
MS.gene056487.t1 AT1G59960 39.355 310 178 8 16 319 21 326 1.16e-69 220
MS.gene056487.t1 AT1G59950 40.645 310 174 8 16 319 15 320 3.30e-66 211
MS.gene056487.t1 AT2G21250 40.948 232 123 5 10 231 5 232 1.51e-55 181
MS.gene056487.t1 AT2G21260 37.321 209 119 4 83 281 8 214 8.53e-45 153
MS.gene056487.t1 AT1G06690 25.519 337 172 16 15 299 57 366 8.56e-15 74.7
MS.gene056487.t1 AT5G53580 23.176 233 135 7 97 300 145 362 7.72e-11 62.8

Find 95 sgRNAs with CRISPR-Local

Find 179 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTTTAGGGTTATTCACCTT+TGG 0.283109 8.3:+32399329 MS.gene056487:intron
ATCGATTGTGCTCAATTATA+TGG 0.285319 8.3:+32397291 MS.gene056487:CDS
GTTTAGGGTTATTCACCTTT+GGG 0.309851 8.3:+32399330 MS.gene056487:intron
CTTCCGTCGGCTTGGGAACT+TGG 0.318119 8.3:+32397114 MS.gene056487:CDS
TTAGGTTGCAAAAGATCTTC+AGG 0.331295 8.3:-32398974 None:intergenic
AAGTTGAATGCCATCCTTCC+TGG 0.331904 8.3:+32399131 MS.gene056487:CDS
AATGCTATTGGTACATCTTC+TGG 0.332221 8.3:-32397596 None:intergenic
TGCTCAGGTAGCTCTTCGTT+GGG 0.340720 8.3:+32399431 MS.gene056487:CDS
CATTTAGAATTGGATGCTTA+AGG 0.343408 8.3:-32399380 None:intergenic
CAGATCTCTTGAAGAACTTT+GGG 0.345354 8.3:+32399741 MS.gene056487:CDS
GCCGTGAATTCGGCGCCTAT+TGG 0.350788 8.3:-32398947 None:intergenic
TTCCATGTGCTGGCTAAGTT+AGG 0.363519 8.3:-32398992 None:intergenic
ACAGATCTCTTGAAGAACTT+TGG 0.367507 8.3:+32399740 MS.gene056487:CDS
GGTCCTTTCTTTATCGCAAC+TGG 0.368778 8.3:-32398926 None:intergenic
TCAGCAACCTCATTTAGAAT+TGG 0.373514 8.3:-32399390 None:intergenic
ATAATGAAAATTTACCTTGA+TGG 0.383153 8.3:-32397183 None:intergenic
TGGCAAGCCGAGGACGATCC+TGG 0.383508 8.3:+32397134 MS.gene056487:CDS
CACCTTTGGGCTCCCCAACC+TGG 0.398492 8.3:+32399343 MS.gene056487:CDS
TCTTCGTTGGGGATTACAAA+TGG 0.402510 8.3:+32399443 MS.gene056487:CDS
TTCAGGCTTAGCCGTGAATT+CGG 0.403381 8.3:-32398957 None:intergenic
AATTTAGCAAACAAGTCTTC+AGG 0.406773 8.3:-32399540 None:intergenic
TAGTGAAGCGCGAAGATTTG+TGG 0.419049 8.3:+32397454 MS.gene056487:CDS
AAGATCCCTTCCGTCGGCTT+GGG 0.419341 8.3:+32397107 MS.gene056487:CDS
TTCCATTGCCTTCCATGTGC+TGG 0.421435 8.3:-32399002 None:intergenic
TACAGAGAAGTGGACACCTT+TGG 0.421647 8.3:-32399185 None:intergenic
CAATTTCTCTATCAAGAAGT+TGG 0.424383 8.3:+32399066 MS.gene056487:CDS
ATCGAAGAATTGAATTGCCT+TGG 0.425062 8.3:-32397069 None:intergenic
CAAGCCGACGGAAGGGATCT+TGG 0.426447 8.3:-32397105 None:intergenic
CATCAGTATGAAGCCAGGTT+GGG 0.428095 8.3:-32399356 None:intergenic
AATAGCATTGGAAAAGACTT+TGG 0.440171 8.3:+32397610 MS.gene056487:CDS
TCTGGCAAGGCAAAGGCTAT+AGG 0.442354 8.3:+32399037 MS.gene056487:CDS
TAAATTTGCTGAGATTGAAC+AGG 0.444522 8.3:+32399557 MS.gene056487:CDS
CTCTTGCTTACAGATTGGCT+TGG 0.445481 8.3:+32397404 MS.gene056487:intron
CTGCTCAGGTAGCTCTTCGT+TGG 0.446657 8.3:+32399430 MS.gene056487:CDS
ACCAATAGGCGCCGAATTCA+CGG 0.452350 8.3:+32398946 MS.gene056487:CDS
ACGGCTTCAGCAACGAGGCC+AGG 0.464853 8.3:-32397152 None:intergenic
CAAGATCCCTTCCGTCGGCT+TGG 0.468615 8.3:+32397106 MS.gene056487:CDS
AATTTCTCTATCAAGAAGTT+GGG 0.469634 8.3:+32399067 MS.gene056487:CDS
GCGATAAAGAAAGGACCAAT+AGG 0.481557 8.3:+32398932 MS.gene056487:CDS
AAGAGATCTGTAGGCACCAT+AGG 0.482007 8.3:-32399728 None:intergenic
TAAGCATCCAATTCTAAATG+AGG 0.488314 8.3:+32399383 MS.gene056487:CDS
CTTCGTTGGGGATTACAAAT+GGG 0.488873 8.3:+32399444 MS.gene056487:CDS
GACGGAAGGGATCTTGGCTC+CGG 0.493320 8.3:-32397099 None:intergenic
CAACGAAGAGCTACCTGAGC+AGG 0.497875 8.3:-32399429 None:intergenic
ATGCCATCCTTCCTGGAGGC+AGG 0.504483 8.3:+32399138 MS.gene056487:CDS
TACCTTGATGGCGGTAGCAA+CGG 0.508389 8.3:-32397171 None:intergenic
GCGGAGTTTGTCCTGCCTCC+AGG 0.509330 8.3:-32399149 None:intergenic
AATGAGGTTGCTGAGAAACT+AGG 0.513727 8.3:+32399399 MS.gene056487:CDS
AGAAGATGTACCAATAGCAT+TGG 0.519523 8.3:+32397598 MS.gene056487:CDS
ACATCAGTATGAAGCCAGGT+TGG 0.521356 8.3:-32399357 None:intergenic
ACTAGGAAAGTCTCCTGCTC+AGG 0.527210 8.3:+32399416 MS.gene056487:CDS
ATCAGTATGAAGCCAGGTTG+GGG 0.529291 8.3:-32399355 None:intergenic
CGCGATTTCTGCAATTCCAA+AGG 0.530051 8.3:+32399169 MS.gene056487:CDS
ACAAATCAACGTAATCAAGC+TGG 0.534843 8.3:-32397640 None:intergenic
TGTGGATTACTTCTAAACTC+TGG 0.541079 8.3:+32397472 MS.gene056487:CDS
CATTCAACTTGATTGACAGC+AGG 0.544893 8.3:-32399118 None:intergenic
TGGCCAGTTGCGATAAAGAA+AGG 0.545205 8.3:+32398923 MS.gene056487:CDS
CAAGTTCCCAAGCCGACGGA+AGG 0.545920 8.3:-32397113 None:intergenic
AACGAGGCCAGGATCGTCCT+CGG 0.548937 8.3:-32397141 None:intergenic
TGTCCTGCCTCCAGGAAGGA+TGG 0.550318 8.3:-32399141 None:intergenic
ATGGAAGCATTGTATGACTC+TGG 0.552515 8.3:+32399019 MS.gene056487:CDS
TCTTTATCGCAACTGGCCAG+TGG 0.553959 8.3:-32398919 None:intergenic
GTTACAGGCAAGATTACTGA+AGG 0.557541 8.3:+32399684 MS.gene056487:intron
ATATTTGTTCATGAAACCTA+TGG 0.561345 8.3:+32399712 MS.gene056487:CDS
CTTGGAAACTTACAGAGAAG+TGG 0.563953 8.3:-32399195 None:intergenic
AAGTTCTTCAAGAGATCTGT+AGG 0.572206 8.3:-32399737 None:intergenic
GTATGACTCTGGCAAGGCAA+AGG 0.576342 8.3:+32399030 MS.gene056487:CDS
AGCCGTTGCTACCGCCATCA+AGG 0.579549 8.3:+32397169 MS.gene056487:CDS
TTGAAGAAACTGTTCGATGA+GGG 0.584300 8.3:+32397429 MS.gene056487:CDS
CTTGGGAACTTGGCAAGCCG+AGG 0.587905 8.3:+32397124 MS.gene056487:CDS
TAACTTAGCCAGCACATGGA+AGG 0.589109 8.3:+32398994 MS.gene056487:CDS
AAGGACATCAGTATGAAGCC+AGG 0.592213 8.3:-32399361 None:intergenic
TCTCTTGAAGAACTTTGGGA+TGG 0.592262 8.3:+32399745 MS.gene056487:CDS
CAATTCTTCGATCTCAACAC+CGG 0.596191 8.3:+32397080 MS.gene056487:CDS
TCAACTTGATTGACAGCAGG+AGG 0.597384 8.3:-32399115 None:intergenic
AAGTTCCCAAGCCGACGGAA+GGG 0.599376 8.3:-32397112 None:intergenic
AACTTGCTTGACAATGTCCA+AGG 0.603582 8.3:+32397052 None:intergenic
ATGAAAATTTACCTTGATGG+CGG 0.606141 8.3:-32397180 None:intergenic
AGCCAGCACATGGAAGGCAA+TGG 0.615743 8.3:+32399000 MS.gene056487:CDS
AGTTTGTCCTGCCTCCAGGA+AGG 0.624277 8.3:-32399145 None:intergenic
TCAATTATATGGCAATCAGA+AGG 0.624823 8.3:+32397302 MS.gene056487:CDS
GCTCAGGTAGCTCTTCGTTG+GGG 0.625808 8.3:+32399432 MS.gene056487:CDS
CTTTGGAATTGCAGAAATCG+CGG 0.626868 8.3:-32399168 None:intergenic
ATTGAGCACAATCGATGTGA+CGG 0.630905 8.3:-32397284 None:intergenic
TTGCCAAGTTCCCAAGCCGA+CGG 0.633068 8.3:-32397117 None:intergenic
GGAGCCAAGATCCCTTCCGT+CGG 0.642083 8.3:+32397101 MS.gene056487:CDS
AACCTAACTTAGCCAGCACA+TGG 0.642937 8.3:+32398990 MS.gene056487:CDS
AGCCAGGTTGGGGAGCCCAA+AGG 0.650642 8.3:-32399345 None:intergenic
ATTATATGGCAATCAGAAGG+AGG 0.657917 8.3:+32397305 MS.gene056487:CDS
AGCATTGTATGACTCTGGCA+AGG 0.662623 8.3:+32399024 MS.gene056487:CDS
TTACAGGCAAGATTACTGAA+GGG 0.677089 8.3:+32399685 MS.gene056487:intron
GAAGTTGGGAGATTTGCTCG+AGG 0.688084 8.3:+32399081 MS.gene056487:CDS
TAGCAACGGCTTCAGCAACG+AGG 0.714364 8.3:-32397157 None:intergenic
GTTGAAGAAACTGTTCGATG+AGG 0.717842 8.3:+32397428 MS.gene056487:CDS
TTGAATGCCATCCTTCCTGG+AGG 0.726179 8.3:+32399134 MS.gene056487:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTATTTTATGTAATGTTTA+GGG + chr8.3:32399315-32399334 MS.gene056487:intron 10.0%
!!! TTAAAATAATAGTTTTATCT+AGG - chr8.3:32398791-32398810 None:intergenic 10.0%
!! AACCTCAAATAATTATTATT+TGG - chr8.3:32398205-32398224 None:intergenic 15.0%
!! TATTATGCTACTATATAATT+TGG + chr8.3:32397997-32398016 MS.gene056487:intron 15.0%
!!! AACAGGTATATATTATTTTA+TGG + chr8.3:32399574-32399593 MS.gene056487:intron 15.0%
!!! ATATTTTATTTGATACATAC+AGG + chr8.3:32397254-32397273 MS.gene056487:intron 15.0%
!!! CATTATTTTATGTAATGTTT+AGG + chr8.3:32399314-32399333 MS.gene056487:intron 15.0%
!! AAACCCAAACAAAAATATTT+GGG + chr8.3:32398072-32398091 MS.gene056487:intron 20.0%
!! ATAATGAAAATTTACCTTGA+TGG - chr8.3:32397186-32397205 None:intergenic 20.0%
!! GTCCAAATAATAATTATTTG+AGG + chr8.3:32398200-32398219 MS.gene056487:intron 20.0%
!!! AAAACTTTGATGTTTTTGAT+TGG + chr8.3:32399511-32399530 MS.gene056487:CDS 20.0%
!!! AACTAACTTTAATTTTGAAG+TGG - chr8.3:32398596-32398615 None:intergenic 20.0%
!!! CTATAAACTAAAGTGTTTAA+GGG - chr8.3:32398283-32398302 None:intergenic 20.0%
! AATTTCTCTATCAAGAAGTT+GGG + chr8.3:32399067-32399086 MS.gene056487:CDS 25.0%
! ACTAGACTATAAAATACTTG+TGG - chr8.3:32397905-32397924 None:intergenic 25.0%
! AGTTAAGGATTGAGAAATTT+GGG - chr8.3:32398430-32398449 None:intergenic 25.0%
! ATATATTTCCAAAACTCAAG+TGG - chr8.3:32397210-32397229 None:intergenic 25.0%
! ATATTTGTTCATGAAACCTA+TGG + chr8.3:32399712-32399731 MS.gene056487:CDS 25.0%
! CAAACCCAAACAAAAATATT+TGG + chr8.3:32398071-32398090 MS.gene056487:intron 25.0%
! CTTATTTGAAGAAAGAGAAA+AGG - chr8.3:32399280-32399299 None:intergenic 25.0%
! TAAAAGAAATTTACATGCGA+AGG + chr8.3:32398660-32398679 MS.gene056487:intron 25.0%
! TAGTTAAGGATTGAGAAATT+TGG - chr8.3:32398431-32398450 None:intergenic 25.0%
! TCGATTAAATAAATCCTACA+TGG - chr8.3:32398851-32398870 None:intergenic 25.0%
!! ACTTTTCTTACATAGCAATA+TGG + chr8.3:32397843-32397862 MS.gene056487:intron 25.0%
!! AGAAATTGAGATTCTAGTTA+AGG - chr8.3:32398445-32398464 None:intergenic 25.0%
!! CCTATAAACTAAAGTGTTTA+AGG - chr8.3:32398284-32398303 None:intergenic 25.0%
!! CCTTAAACACTTTAGTTTAT+AGG + chr8.3:32398281-32398300 MS.gene056487:intron 25.0%
!! TGAAAAAGAAAGTGAGATTT+TGG + chr8.3:32398336-32398355 MS.gene056487:intron 25.0%
!!! AATATTTTTGTTTGGGTTTG+TGG - chr8.3:32398071-32398090 None:intergenic 25.0%
!!! ATAATAGTTTTATCTAGGCT+AGG - chr8.3:32398786-32398805 None:intergenic 25.0%
!!! ATTGTCTAGTTTTATGACAA+TGG + chr8.3:32399653-32399672 MS.gene056487:intron 25.0%
AAGAAGAACTTCAACACTAT+AGG - chr8.3:32399618-32399637 None:intergenic 30.0%
AATTTAGCAAACAAGTCTTC+AGG - chr8.3:32399543-32399562 None:intergenic 30.0%
ATCGATTGTGCTCAATTATA+TGG + chr8.3:32397291-32397310 MS.gene056487:CDS 30.0%
ATGAAAATTTACCTTGATGG+CGG - chr8.3:32397183-32397202 None:intergenic 30.0%
CAACAAAAATGCAACATATG+AGG - chr8.3:32398527-32398546 None:intergenic 30.0%
CAATTTCTCTATCAAGAAGT+TGG + chr8.3:32399066-32399085 MS.gene056487:CDS 30.0%
CTAATGCATGTAATATGTGA+AGG + chr8.3:32397361-32397380 MS.gene056487:intron 30.0%
GAAGTTCTTCTTTACTTTCA+TGG + chr8.3:32399626-32399645 MS.gene056487:intron 30.0%
TAAGCATCCAATTCTAAATG+AGG + chr8.3:32399383-32399402 MS.gene056487:CDS 30.0%
TACATACTCAATTTAACCGA+TGG + chr8.3:32398880-32398899 MS.gene056487:intron 30.0%
TCAATTATATGGCAATCAGA+AGG + chr8.3:32397302-32397321 MS.gene056487:CDS 30.0%
TGATCATTCAAGAAAAGACT+TGG - chr8.3:32399216-32399235 None:intergenic 30.0%
TGCATTAGTTAACATAGAGA+AGG - chr8.3:32397349-32397368 None:intergenic 30.0%
TTTATTTGATACATACAGGC+TGG + chr8.3:32397258-32397277 MS.gene056487:intron 30.0%
! AAAGTCTTTTCCAATGCTAT+TGG - chr8.3:32397611-32397630 None:intergenic 30.0%
! AATAGCATTGGAAAAGACTT+TGG + chr8.3:32397610-32397629 MS.gene056487:CDS 30.0%
! ACAATGGCTTTTATTGTTAC+AGG + chr8.3:32399669-32399688 MS.gene056487:intron 30.0%
! CATTTAGAATTGGATGCTTA+AGG - chr8.3:32399383-32399402 None:intergenic 30.0%
! GGTAACAAAAGCACATTATA+CGG - chr8.3:32398262-32398281 None:intergenic 30.0%
! GTATTTTATAGTCTAGTGCA+TGG + chr8.3:32397908-32397927 MS.gene056487:intron 30.0%
! TCATAGATTTTCCTAATGCT+TGG + chr8.3:32397695-32397714 MS.gene056487:intron 30.0%
! TCATTATTCCACTTGAGTTT+TGG + chr8.3:32397199-32397218 MS.gene056487:intron 30.0%
! TTTGGGATTGAAATTGAATG+AGG - chr8.3:32398413-32398432 None:intergenic 30.0%
!! TAAATTTGCTGAGATTGAAC+AGG + chr8.3:32399557-32399576 MS.gene056487:CDS 30.0%
!! TATTATTTTATGGTTGCCCT+AGG + chr8.3:32399584-32399603 MS.gene056487:intron 30.0%
!!! CTTTTTTCATTTGCACTCTT+GGG - chr8.3:32399483-32399502 None:intergenic 30.0%
AAGTTCTTCAAGAGATCTGT+AGG - chr8.3:32399740-32399759 None:intergenic 35.0%
AAGTTTGGGAATGCATTTAC+TGG - chr8.3:32397952-32397971 None:intergenic 35.0%
AATAAATCCTACATGGATCC+CGG - chr8.3:32398844-32398863 None:intergenic 35.0%
AATAAGATGATGTGCACTGT+AGG + chr8.3:32397558-32397577 MS.gene056487:intron 35.0%
AATGATCAGAACCAAGCATT+AGG - chr8.3:32397709-32397728 None:intergenic 35.0%
AATGCTATTGGTACATCTTC+TGG - chr8.3:32397599-32397618 None:intergenic 35.0%
AATTTACATGCGAAGGATCA+AGG + chr8.3:32398667-32398686 MS.gene056487:intron 35.0%
ACAAATCAACGTAATCAAGC+TGG - chr8.3:32397643-32397662 None:intergenic 35.0%
ACAGATCTCTTGAAGAACTT+TGG + chr8.3:32399740-32399759 MS.gene056487:CDS 35.0%
AGAAGATGTACCAATAGCAT+TGG + chr8.3:32397598-32397617 MS.gene056487:CDS 35.0%
ATCGAAGAATTGAATTGCCT+TGG - chr8.3:32397072-32397091 None:intergenic 35.0%
ATCTGAAAAGGAAGAACCAT+CGG - chr8.3:32398899-32398918 None:intergenic 35.0%
ATTATATGGCAATCAGAAGG+AGG + chr8.3:32397305-32397324 MS.gene056487:CDS 35.0%
CAGATCTCTTGAAGAACTTT+GGG + chr8.3:32399741-32399760 MS.gene056487:CDS 35.0%
GAACTAGACACTGAATCTTT+AGG - chr8.3:32398485-32398504 None:intergenic 35.0%
GCAACATATGAGGATGAATT+TGG - chr8.3:32398517-32398536 None:intergenic 35.0%
GCATGTAATATGTGAAGGAA+AGG + chr8.3:32397366-32397385 MS.gene056487:intron 35.0%
TAATAGACTGCATGTTTGCT+TGG + chr8.3:32397787-32397806 MS.gene056487:intron 35.0%
TTACAGGCAAGATTACTGAA+GGG + chr8.3:32399685-32399704 MS.gene056487:intron 35.0%
TTCTTCTCTTGCTTACAGAT+TGG + chr8.3:32397399-32397418 MS.gene056487:intron 35.0%
TTGAAGAAACTGTTCGATGA+GGG + chr8.3:32397429-32397448 MS.gene056487:CDS 35.0%
TTGAATGAGGATTCAGAAGT+TGG - chr8.3:32398400-32398419 None:intergenic 35.0%
! CAGAAGTTGGATTCAAGTTA+AGG - chr8.3:32398387-32398406 None:intergenic 35.0%
! CCAAGAGTGCAAATGAAAAA+AGG + chr8.3:32399481-32399500 MS.gene056487:CDS 35.0%
! CGGATCCATGACTAAATTTT+TGG - chr8.3:32398819-32398838 None:intergenic 35.0%
! GTTTAGGGTTATTCACCTTT+GGG + chr8.3:32399330-32399349 MS.gene056487:intron 35.0%
! TCAGCAACCTCATTTAGAAT+TGG - chr8.3:32399393-32399412 None:intergenic 35.0%
! TGTGGATTACTTCTAAACTC+TGG + chr8.3:32397472-32397491 MS.gene056487:CDS 35.0%
! TGTTTAGGGTTATTCACCTT+TGG + chr8.3:32399329-32399348 MS.gene056487:intron 35.0%
! TTAGGTTGCAAAAGATCTTC+AGG - chr8.3:32398977-32398996 None:intergenic 35.0%
!! GCGCCCAAATATTTTTGTTT+GGG - chr8.3:32398078-32398097 None:intergenic 35.0%
!! TGCGCCCAAATATTTTTGTT+TGG - chr8.3:32398079-32398098 None:intergenic 35.0%
!!! CCTTTTTTCATTTGCACTCT+TGG - chr8.3:32399484-32399503 None:intergenic 35.0%
AATGAGGTTGCTGAGAAACT+AGG + chr8.3:32399399-32399418 MS.gene056487:CDS 40.0%
ACTATAGGTGTGTAGACCTA+GGG - chr8.3:32399603-32399622 None:intergenic 40.0%
AGTGCATGGACATAGTTAGA+AGG + chr8.3:32397922-32397941 MS.gene056487:intron 40.0%
ATTGAGCACAATCGATGTGA+CGG - chr8.3:32397287-32397306 None:intergenic 40.0%
CAATTCTTCGATCTCAACAC+CGG + chr8.3:32397080-32397099 MS.gene056487:CDS 40.0%
CATTCAACTTGATTGACAGC+AGG - chr8.3:32399121-32399140 None:intergenic 40.0%
CCACGCCAAAAATTTAGTCA+TGG + chr8.3:32398811-32398830 MS.gene056487:intron 40.0%
CTTCGTTGGGGATTACAAAT+GGG + chr8.3:32399444-32399463 MS.gene056487:CDS 40.0%
CTTGGAAACTTACAGAGAAG+TGG - chr8.3:32399198-32399217 None:intergenic 40.0%
GCGATAAAGAAAGGACCAAT+AGG + chr8.3:32398932-32398951 MS.gene056487:CDS 40.0%
GTGCATGGACATAGTTAGAA+GGG + chr8.3:32397923-32397942 MS.gene056487:intron 40.0%
GTTACAGGCAAGATTACTGA+AGG + chr8.3:32399684-32399703 MS.gene056487:intron 40.0%
GTTGAAGAAACTGTTCGATG+AGG + chr8.3:32397428-32397447 MS.gene056487:CDS 40.0%
TCTTCGTTGGGGATTACAAA+TGG + chr8.3:32399443-32399462 MS.gene056487:CDS 40.0%
TGCATGGACATAGTTAGAAG+GGG + chr8.3:32397924-32397943 MS.gene056487:intron 40.0%
TGCGAAATCTGTTGTACACA+CGG + chr8.3:32397756-32397775 MS.gene056487:intron 40.0%
! TCTCTTGAAGAACTTTGGGA+TGG + chr8.3:32399745-32399764 MS.gene056487:CDS 40.0%
! TTCTTCCTTTTCAGATCCAC+TGG + chr8.3:32398903-32398922 MS.gene056487:intron 40.0%
!! ATGGAAGCATTGTATGACTC+TGG + chr8.3:32399019-32399038 MS.gene056487:CDS 40.0%
!! CTTTGGAATTGCAGAAATCG+CGG - chr8.3:32399171-32399190 None:intergenic 40.0%
!!! CCATGACTAAATTTTTGGCG+TGG - chr8.3:32398814-32398833 None:intergenic 40.0%
AACCTAACTTAGCCAGCACA+TGG + chr8.3:32398990-32399009 MS.gene056487:CDS 45.0%
AAGAGATCTGTAGGCACCAT+AGG - chr8.3:32399731-32399750 None:intergenic 45.0%
AAGGACATCAGTATGAAGCC+AGG - chr8.3:32399364-32399383 None:intergenic 45.0%
AAGTTGAATGCCATCCTTCC+TGG + chr8.3:32399131-32399150 MS.gene056487:CDS 45.0%
AATCTGTTGTACACACGGCT+TGG + chr8.3:32397761-32397780 MS.gene056487:intron 45.0%
ACATCAGTATGAAGCCAGGT+TGG - chr8.3:32399360-32399379 None:intergenic 45.0%
AGCATTGTATGACTCTGGCA+AGG + chr8.3:32399024-32399043 MS.gene056487:CDS 45.0%
ATCAGTATGAAGCCAGGTTG+GGG - chr8.3:32399358-32399377 None:intergenic 45.0%
ATTTAGTCATGGATCCGCTC+CGG + chr8.3:32398822-32398841 MS.gene056487:intron 45.0%
CACTATAGGTGTGTAGACCT+AGG - chr8.3:32399604-32399623 None:intergenic 45.0%
CATCAGTATGAAGCCAGGTT+GGG - chr8.3:32399359-32399378 None:intergenic 45.0%
CGCGATTTCTGCAATTCCAA+AGG + chr8.3:32399169-32399188 MS.gene056487:CDS 45.0%
GCATGGACATAGTTAGAAGG+GGG + chr8.3:32397925-32397944 MS.gene056487:intron 45.0%
GGTCCTTTCTTTATCGCAAC+TGG - chr8.3:32398929-32398948 None:intergenic 45.0%
TAACTTAGCCAGCACATGGA+AGG + chr8.3:32398994-32399013 MS.gene056487:CDS 45.0%
TACAGAGAAGTGGACACCTT+TGG - chr8.3:32399188-32399207 None:intergenic 45.0%
TAGTGAAGCGCGAAGATTTG+TGG + chr8.3:32397454-32397473 MS.gene056487:CDS 45.0%
TCAACTTGATTGACAGCAGG+AGG - chr8.3:32399118-32399137 None:intergenic 45.0%
TGGCCAGTTGCGATAAAGAA+AGG + chr8.3:32398923-32398942 MS.gene056487:CDS 45.0%
TTCAGGCTTAGCCGTGAATT+CGG - chr8.3:32398960-32398979 None:intergenic 45.0%
! CTCTTGCTTACAGATTGGCT+TGG + chr8.3:32397404-32397423 MS.gene056487:intron 45.0%
!! TTCCATGTGCTGGCTAAGTT+AGG - chr8.3:32398995-32399014 None:intergenic 45.0%
!! AATAAAATATTAGAAAAAAA+TGG + chr8.3:32398701-32398720 MS.gene056487:intron 5.0%
!! ATATATAAAAAAAAAAAGTT+TGG - chr8.3:32397967-32397986 None:intergenic 5.0%
!! TATATAAAAAAAAAAAGTTT+GGG - chr8.3:32397966-32397985 None:intergenic 5.0%
!!! ATTTTATTTTCTTATAAATT+TGG - chr8.3:32398116-32398135 None:intergenic 5.0%
ACTAGGAAAGTCTCCTGCTC+AGG + chr8.3:32399416-32399435 MS.gene056487:CDS 50.0%
ACTGGCCAGTGGATCTGAAA+AGG - chr8.3:32398911-32398930 None:intergenic 50.0%
GTATGACTCTGGCAAGGCAA+AGG + chr8.3:32399030-32399049 MS.gene056487:CDS 50.0%
TCTGGCAAGGCAAAGGCTAT+AGG + chr8.3:32399037-32399056 MS.gene056487:CDS 50.0%
TCTTTATCGCAACTGGCCAG+TGG - chr8.3:32398922-32398941 None:intergenic 50.0%
TGCTCAGGTAGCTCTTCGTT+GGG + chr8.3:32399431-32399450 MS.gene056487:CDS 50.0%
TGTGGTCGACAAGTCTGCAA+AGG - chr8.3:32397887-32397906 None:intergenic 50.0%
TTCCATTGCCTTCCATGTGC+TGG - chr8.3:32399005-32399024 None:intergenic 50.0%
TTGAATGCCATCCTTCCTGG+AGG + chr8.3:32399134-32399153 MS.gene056487:CDS 50.0%
TTTAGTCATGGATCCGCTCC+GGG + chr8.3:32398823-32398842 MS.gene056487:intron 50.0%
! GAAGTTGGGAGATTTGCTCG+AGG + chr8.3:32399081-32399100 MS.gene056487:CDS 50.0%
! GACAAGTCTGCAAAGGCACA+TGG - chr8.3:32397880-32397899 None:intergenic 50.0%
!! ACCAATAGGCGCCGAATTCA+CGG + chr8.3:32398946-32398965 MS.gene056487:CDS 50.0%
!! TACCTTGATGGCGGTAGCAA+CGG - chr8.3:32397174-32397193 None:intergenic 50.0%
AAGTTCCCAAGCCGACGGAA+GGG - chr8.3:32397115-32397134 None:intergenic 55.0%
AGCCAGCACATGGAAGGCAA+TGG + chr8.3:32399000-32399019 MS.gene056487:CDS 55.0%
AGTTTGTCCTGCCTCCAGGA+AGG - chr8.3:32399148-32399167 None:intergenic 55.0%
ATCCTACATGGATCCCGGAG+CGG - chr8.3:32398839-32398858 None:intergenic 55.0%
CAACGAAGAGCTACCTGAGC+AGG - chr8.3:32399432-32399451 None:intergenic 55.0%
CTGCTCAGGTAGCTCTTCGT+TGG + chr8.3:32399430-32399449 MS.gene056487:CDS 55.0%
GCTCAGGTAGCTCTTCGTTG+GGG + chr8.3:32399432-32399451 MS.gene056487:CDS 55.0%
TAGCAACGGCTTCAGCAACG+AGG - chr8.3:32397160-32397179 None:intergenic 55.0%
TTGCCAAGTTCCCAAGCCGA+CGG - chr8.3:32397120-32397139 None:intergenic 55.0%
!! AAGATCCCTTCCGTCGGCTT+GGG + chr8.3:32397107-32397126 MS.gene056487:CDS 55.0%
AACGAGGCCAGGATCGTCCT+CGG - chr8.3:32397144-32397163 None:intergenic 60.0%
AGCCGTTGCTACCGCCATCA+AGG + chr8.3:32397169-32397188 MS.gene056487:CDS 60.0%
ATCCGCTCCGGGATCCATGT+AGG + chr8.3:32398834-32398853 MS.gene056487:intron 60.0%
ATGCCATCCTTCCTGGAGGC+AGG + chr8.3:32399138-32399157 MS.gene056487:CDS 60.0%
CAAGCCGACGGAAGGGATCT+TGG - chr8.3:32397108-32397127 None:intergenic 60.0%
CAAGTTCCCAAGCCGACGGA+AGG - chr8.3:32397116-32397135 None:intergenic 60.0%
CTTGGGAACTTGGCAAGCCG+AGG + chr8.3:32397124-32397143 MS.gene056487:CDS 60.0%
GACGGAAGGGATCTTGGCTC+CGG - chr8.3:32397102-32397121 None:intergenic 60.0%
GCCGTGAATTCGGCGCCTAT+TGG - chr8.3:32398950-32398969 None:intergenic 60.0%
GGAGCCAAGATCCCTTCCGT+CGG + chr8.3:32397101-32397120 MS.gene056487:CDS 60.0%
TGTCCTGCCTCCAGGAAGGA+TGG - chr8.3:32399144-32399163 None:intergenic 60.0%
! CAAGATCCCTTCCGTCGGCT+TGG + chr8.3:32397106-32397125 MS.gene056487:CDS 60.0%
!! CTTCCGTCGGCTTGGGAACT+TGG + chr8.3:32397114-32397133 MS.gene056487:CDS 60.0%
ACGGCTTCAGCAACGAGGCC+AGG - chr8.3:32397155-32397174 None:intergenic 65.0%
CACCTTTGGGCTCCCCAACC+TGG + chr8.3:32399343-32399362 MS.gene056487:CDS 65.0%
GCGGAGTTTGTCCTGCCTCC+AGG - chr8.3:32399152-32399171 None:intergenic 65.0%
TGGCAAGCCGAGGACGATCC+TGG + chr8.3:32397134-32397153 MS.gene056487:CDS 65.0%
! AGCCAGGTTGGGGAGCCCAA+AGG - chr8.3:32399348-32399367 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr8.3 gene 32397065 32399777 32397065 ID=MS.gene056487
chr8.3 mRNA 32397065 32399777 32397065 ID=MS.gene056487.t1;Parent=MS.gene056487
chr8.3 exon 32397065 32397190 32397065 ID=MS.gene056487.t1.exon1;Parent=MS.gene056487.t1
chr8.3 CDS 32397065 32397190 32397065 ID=cds.MS.gene056487.t1;Parent=MS.gene056487.t1
chr8.3 exon 32397276 32397326 32397276 ID=MS.gene056487.t1.exon2;Parent=MS.gene056487.t1
chr8.3 CDS 32397276 32397326 32397276 ID=cds.MS.gene056487.t1;Parent=MS.gene056487.t1
chr8.3 exon 32397417 32397493 32397417 ID=MS.gene056487.t1.exon3;Parent=MS.gene056487.t1
chr8.3 CDS 32397417 32397493 32397417 ID=cds.MS.gene056487.t1;Parent=MS.gene056487.t1
chr8.3 exon 32397580 32397667 32397580 ID=MS.gene056487.t1.exon4;Parent=MS.gene056487.t1
chr8.3 CDS 32397580 32397667 32397580 ID=cds.MS.gene056487.t1;Parent=MS.gene056487.t1
chr8.3 exon 32398917 32399204 32398917 ID=MS.gene056487.t1.exon5;Parent=MS.gene056487.t1
chr8.3 CDS 32398917 32399204 32398917 ID=cds.MS.gene056487.t1;Parent=MS.gene056487.t1
chr8.3 exon 32399336 32399578 32399336 ID=MS.gene056487.t1.exon6;Parent=MS.gene056487.t1
chr8.3 CDS 32399336 32399578 32399336 ID=cds.MS.gene056487.t1;Parent=MS.gene056487.t1
chr8.3 exon 32399691 32399777 32399691 ID=MS.gene056487.t1.exon7;Parent=MS.gene056487.t1
chr8.3 CDS 32399691 32399777 32399691 ID=cds.MS.gene056487.t1;Parent=MS.gene056487.t1
Gene Sequence

>MS.gene056487

ATGTCCAAGGCAATTCAATTCTTCGATCTCAACACCGGAGCCAAGATCCCTTCCGTCGGCTTGGGAACTTGGCAAGCCGAGGACGATCCTGGCCTCGTTGCTGAAGCCGTTGCTACCGCCATCAAGGTAAATTTTCATTATTCCACTTGAGTTTTGGAAATATATTTGTATTCAATATAATGAATAATGATATTTTATTTGATACATACAGGCTGGCTACCGTCACATCGATTGTGCTCAATTATATGGCAATCAGAAGGAGGTACGTAATTCATTGTTTGCCTTCTCTATGTTAACTAATGCATGTAATATGTGAAGGAAAGGATTCATTCATTTCTTCTCTTGCTTACAGATTGGCTTGGTGTTGAAGAAACTGTTCGATGAGGGCGTAGTGAAGCGCGAAGATTTGTGGATTACTTCTAAACTCTGGTTTGTTTGAATGTTTTAGCTAATTTATGAATGTGTTAGTCTTGTTTACTATTTAGTAGTATCTAATAAGATGATGTGCACTGTAGGAATACTGATCATGCTCCAGAAGATGTACCAATAGCATTGGAAAAGACTTTGGCAGAATTCCAGCTTGATTACGTTGATTTGTATCTTGTATGTAATAACTCTATCACTCAATCTTCATAGATTTTCCTAATGCTTGGTTCTGATCATTAATTTCTTTCGAAATTAGAAGTGAAAATGCGAAATCTGTTGTACACACGGCTTGGTTATAATAGACTGCATGTTTGCTTGGCAAAAGCTATGTGTTTAACTTTTTTAATTATAAACTTTTCTTACATAGCAATATGGTAGTTGTTAAGCCATGTGCCTTTGCAGACTTGTCGACCACAAGTATTTTATAGTCTAGTGCATGGACATAGTTAGAAGGGGGTCCAGTAAATGCATTCCCAAACTTTTTTTTTTTATATATATATATATACTATTATGCTACTATATAATTTGGTCTTTATATTTATTTTTTGTGAATTTTATATAAGACATGTTTACTTCGCCACAAACCCAAACAAAAATATTTGGGCGCACACACAAAGTCAAACCAAATTTATAAGAAAATAAAATTACACGATATCATTTGATGTAACTAATTACTTTTTGTTTAATTTTGTTAATTTCATGTGAGTGTGTCCAAATAATAATTATTTGAGGTTGTGTTCATGAAAGACTTTCTCACTTTATATTGTACCGTATAATGTGCTTTTGTTACCCTTAAACACTTTAGTTTATAGGTTTAATTAAATTAATTCTTAACTAGAATTTTGTGAAAAAGAAAGTGAGATTTTGGTCTACGATTTAAGAAGAATCTTAATCCTTAACTTGAATCCAACTTCTGAATCCTCATTCAATTTCAATCCCAAATTTCTCAATCCTTAACTAGAATCTCAATTTCTGAATTTTATTTTAGTCACCTAAAGATTCAGTGTCTAGTTCACAATTTCACCAAATTCATCCTCATATGTTGCATTTTTGTTGTTTCATAATATATGATTTTAAATATATAATGAAACAACTACAAGAACCACTTCAAAATTAAAGTTAGTTCTTGTTACACAATATTGATTTCAGATATATATATTAAAATTTCTTAAAAGAAATTTACATGCGAAGGATCAAGGATGTCTATAAGAATAAAATATTAGAAAAAAATGGCGTCTTATTTTGTTCTAATTAGCAATTGTTAATGTTACAAATTGACTTGAACTAATAAACCTAGCCTAGATAAAACTATTATTTTAACCACGCCAAAAATTTAGTCATGGATCCGCTCCGGGATCCATGTAGGATTTATTTAATCGAATTTCAAAATACATACTCAATTTAACCGATGGTTCTTCCTTTTCAGATCCACTGGCCAGTTGCGATAAAGAAAGGACCAATAGGCGCCGAATTCACGGCTAAGCCTGAAGATCTTTTGCAACCTAACTTAGCCAGCACATGGAAGGCAATGGAAGCATTGTATGACTCTGGCAAGGCAAAGGCTATAGGTGTGAGCAATTTCTCTATCAAGAAGTTGGGAGATTTGCTCGAGGTTGCTCGTGTTCCTCCTGCTGTCAATCAAGTTGAATGCCATCCTTCCTGGAGGCAGGACAAACTCCGCGATTTCTGCAATTCCAAAGGTGTCCACTTCTCTGTAAGTTTCCAAGTCTTTTCTTGAATGATCATTATTTTGTTTCAGCACATTATATTTACTATTTTCATGAAACCTTTTCTCTTTCTTCAAATAAGTCATTATATTTTTGCATTATTTTATGTAATGTTTAGGGTTATTCACCTTTGGGCTCCCCAACCTGGCTTCATACTGATGTCCTTAAGCATCCAATTCTAAATGAGGTTGCTGAGAAACTAGGAAAGTCTCCTGCTCAGGTAGCTCTTCGTTGGGGATTACAAATGGGTCATAGTGTGCTTCCCAAGAGTGCAAATGAAAAAAGGATAAAAGAAAACTTTGATGTTTTTGATTGGTCTATACCTGAAGACTTGTTTGCTAAATTTGCTGAGATTGAACAGGTATATATTATTTTATGGTTGCCCTAGGTCTACACACCTATAGTGTTGAAGTTCTTCTTTACTTTCATGGAAATATTGTCTAGTTTTATGACAATGGCTTTTATTGTTACAGGCAAGATTACTGAAGGGTGACATATTTGTTCATGAAACCTATGGTGCCTACAGATCTCTTGAAGAACTTTGGGATGGTGAAATCTAA

Protein sequence

>MS.gene056487.t1

MSKAIQFFDLNTGAKIPSVGLGTWQAEDDPGLVAEAVATAIKAGYRHIDCAQLYGNQKEIGLVLKKLFDEGVVKREDLWITSKLWNTDHAPEDVPIALEKTLAEFQLDYVDLYLIHWPVAIKKGPIGAEFTAKPEDLLQPNLASTWKAMEALYDSGKAKAIGVSNFSIKKLGDLLEVARVPPAVNQVECHPSWRQDKLRDFCNSKGVHFSGYSPLGSPTWLHTDVLKHPILNEVAEKLGKSPAQVALRWGLQMGHSVLPKSANEKRIKENFDVFDWSIPEDLFAKFAEIEQARLLKGDIFVHETYGAYRSLEELWDGEI