Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34394.t1 | ABQ01425.1 | 81.9 | 199 | 1 | 1 | 1 | 164 | 1 | 199 | 1.80E-75 | 292 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34394.t1 | P11432 | 72.4 | 196 | 22 | 1 | 1 | 164 | 1 | 196 | 3.4e-67 | 255.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34394.t1 | A5HB53 | 81.9 | 199 | 1 | 1 | 1 | 164 | 1 | 199 | 1.3e-75 | 292.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049757 | MS.gene34394 | 0.804572 | 2.03E-49 | -1.69E-46 |
| MS.gene050060 | MS.gene34394 | 0.808487 | 3.02E-50 | -1.69E-46 |
| MS.gene051734 | MS.gene34394 | 0.825653 | 4.17E-54 | -1.69E-46 |
| MS.gene052188 | MS.gene34394 | 0.803646 | 3.16E-49 | -1.69E-46 |
| MS.gene052414 | MS.gene34394 | 0.831507 | 1.61E-55 | -1.69E-46 |
| MS.gene052469 | MS.gene34394 | 0.852037 | 6.00E-61 | -1.69E-46 |
| MS.gene054349 | MS.gene34394 | 0.826684 | 2.37E-54 | -1.69E-46 |
| MS.gene054884 | MS.gene34394 | -0.805498 | 1.30E-49 | -1.69E-46 |
| MS.gene055539 | MS.gene34394 | 0.850533 | 1.60E-60 | -1.69E-46 |
| MS.gene05556 | MS.gene34394 | 0.804168 | 2.46E-49 | -1.69E-46 |
| MS.gene055741 | MS.gene34394 | 0.846984 | 1.54E-59 | -1.69E-46 |
| MS.gene055744 | MS.gene34394 | 0.850562 | 1.57E-60 | -1.69E-46 |
| MS.gene056876 | MS.gene34394 | 0.805448 | 1.33E-49 | -1.69E-46 |
| MS.gene057019 | MS.gene34394 | 0.805226 | 1.48E-49 | -1.69E-46 |
| MS.gene057396 | MS.gene34394 | 0.80458 | 2.02E-49 | -1.69E-46 |
| MS.gene058448 | MS.gene34394 | 0.805783 | 1.13E-49 | -1.69E-46 |
| MS.gene059717 | MS.gene34394 | 0.872528 | 2.97E-67 | -1.69E-46 |
| MS.gene059788 | MS.gene34394 | 0.808943 | 2.42E-50 | -1.69E-46 |
| MS.gene059807 | MS.gene34394 | 0.813086 | 3.06E-51 | -1.69E-46 |
| MS.gene061154 | MS.gene34394 | 0.830889 | 2.28E-55 | -1.69E-46 |
| MS.gene061231 | MS.gene34394 | 0.805544 | 1.27E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34394.t1 | MTR_1g102570 | 81.313 | 198 | 3 | 2 | 1 | 164 | 1 | 198 | 3.27e-105 | 299 |
| MS.gene34394.t1 | MTR_1g102780 | 80.500 | 200 | 3 | 2 | 1 | 164 | 1 | 200 | 1.16e-104 | 298 |
| MS.gene34394.t1 | MTR_1g102800 | 79.695 | 197 | 7 | 1 | 1 | 164 | 1 | 197 | 2.06e-103 | 295 |
| MS.gene34394.t1 | MTR_1g102830 | 77.711 | 166 | 16 | 1 | 20 | 164 | 21 | 186 | 4.62e-88 | 255 |
| MS.gene34394.t1 | MTR_1g102810 | 76.757 | 185 | 19 | 2 | 1 | 164 | 1 | 182 | 5.36e-87 | 253 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene34394.t1 | AT3G22840 | 48.744 | 199 | 63 | 3 | 1 | 164 | 1 | 195 | 3.37e-58 | 180 |
| MS.gene34394.t1 | AT4G14690 | 69.027 | 113 | 35 | 0 | 52 | 164 | 81 | 193 | 9.33e-55 | 171 |
Find 47 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGAAGGGATGTTGTTAAAT+TGG | 0.214729 | 1.2:-76482108 | None:intergenic |
| TGGTGGAATTCCATGGTTCT+TGG | 0.288858 | 1.2:+76483167 | MS.gene34394:CDS |
| GGTGGAATTCCATGGTTCTT+GGG | 0.299911 | 1.2:+76483168 | MS.gene34394:CDS |
| GGTTTGTTTGATCAAATATC+TGG | 0.314167 | 1.2:+76483144 | MS.gene34394:CDS |
| TATGTTGGGTTTAATTGCTT+TGG | 0.338821 | 1.2:+76483308 | MS.gene34394:CDS |
| AATGGAAGGTTGGCTATGAT+TGG | 0.393839 | 1.2:+76483081 | MS.gene34394:CDS |
| GGCCTTTACAGAGTATGTTA+AGG | 0.395379 | 1.2:+76483329 | MS.gene34394:CDS |
| GCCTTTACAGAGTATGTTAA+GGG | 0.401917 | 1.2:+76483330 | MS.gene34394:CDS |
| CCATTGATTCTCTCAGGTGC+TGG | 0.411549 | 1.2:-76483063 | None:intergenic |
| AACCTTCCATTGATTCTCTC+AGG | 0.436061 | 1.2:-76483069 | None:intergenic |
| TGTCCTCAGATGCAGAACTA+TGG | 0.436951 | 1.2:+76483271 | MS.gene34394:CDS |
| GAATGGAAGAATTGCTATGT+TGG | 0.442937 | 1.2:+76483293 | MS.gene34394:CDS |
| TTGTTAAATTGGTTAACTCT+AGG | 0.463045 | 1.2:-76482097 | None:intergenic |
| GTGGAATTCCATGGTTCTTG+GGG | 0.468120 | 1.2:+76483169 | MS.gene34394:CDS |
| CGGATTTGATGGCATTTGGT+GGG | 0.485102 | 1.2:+76483040 | MS.gene34394:CDS |
| TCGGATTTGATGGCATTTGG+TGG | 0.487791 | 1.2:+76483039 | MS.gene34394:CDS |
| GGAATGCTAGCCTCAAAGTT+CGG | 0.497529 | 1.2:+76482152 | MS.gene34394:CDS |
| AGTGTTGAGTCTAAGTCAAA+AGG | 0.509995 | 1.2:+76483243 | MS.gene34394:CDS |
| AATGGAAGAATTGCTATGTT+GGG | 0.512582 | 1.2:+76483294 | MS.gene34394:CDS |
| CCAGCACCTGAGAGAATCAA+TGG | 0.516939 | 1.2:+76483063 | MS.gene34394:CDS |
| TCTAGGCCTGCTAGGAATGC+TGG | 0.517121 | 1.2:-76482080 | None:intergenic |
| CCATGACCAGCATTCCTAGC+AGG | 0.521757 | 1.2:+76482074 | MS.gene34394:CDS |
| CCTGCTAGGAATGCTGGTCA+TGG | 0.521892 | 1.2:-76482074 | None:intergenic |
| CAGCCATGGACCGAACTTTG+AGG | 0.527132 | 1.2:-76482162 | None:intergenic |
| CGAAAACATTACCTCAGCCA+TGG | 0.528935 | 1.2:-76482176 | None:intergenic |
| CAAAGTTCGGTCCATGGCTG+AGG | 0.533870 | 1.2:+76482165 | MS.gene34394:CDS |
| CTAGCATTCCTTCTGAAGCT+AGG | 0.541676 | 1.2:-76482139 | None:intergenic |
| GGTGGAGATAGCAAATGGAC+AGG | 0.547189 | 1.2:+76483122 | MS.gene34394:CDS |
| ATTCCATAGTTCTGCATCTG+AGG | 0.548696 | 1.2:-76483274 | None:intergenic |
| ACCCTTAACATACTCTGTAA+AGG | 0.552111 | 1.2:-76483331 | None:intergenic |
| TTTGATCAAATATCTGGTGG+TGG | 0.559193 | 1.2:+76483150 | MS.gene34394:CDS |
| TGAGAGAATCAATGGAAGGT+TGG | 0.560259 | 1.2:+76483071 | MS.gene34394:CDS |
| TTGTTTGATCAAATATCTGG+TGG | 0.570609 | 1.2:+76483147 | MS.gene34394:CDS |
| TGGTTAACTCTAGGCCTGCT+AGG | 0.578482 | 1.2:-76482088 | None:intergenic |
| TAGCCTCAAAGTTCGGTCCA+TGG | 0.581082 | 1.2:+76482159 | MS.gene34394:CDS |
| CTATAGAAATCTATTACACA+AGG | 0.584441 | 1.2:-76483359 | None:intergenic |
| TAGACTCAACACTAACACCT+TGG | 0.586516 | 1.2:-76483233 | None:intergenic |
| AAGCTAGGCATATACACAGA+AGG | 0.589450 | 1.2:-76482124 | None:intergenic |
| TCAGATGCAGAACTATGGAA+TGG | 0.597938 | 1.2:+76483276 | MS.gene34394:CDS |
| TGTATATGCCTAGCTTCAGA+AGG | 0.600911 | 1.2:+76482131 | MS.gene34394:CDS |
| AGCTAGGCATATACACAGAA+GGG | 0.613758 | 1.2:-76482123 | None:intergenic |
| TATCTGGTGGTGGAATTCCA+TGG | 0.624337 | 1.2:+76483160 | MS.gene34394:CDS |
| ACACTTGTCCCCAAGAACCA+TGG | 0.633615 | 1.2:-76483177 | None:intergenic |
| GTGGAGATAGCAAATGGACA+GGG | 0.645295 | 1.2:+76483123 | MS.gene34394:CDS |
| CACCTGAGAGAATCAATGGA+AGG | 0.646646 | 1.2:+76483067 | MS.gene34394:CDS |
| AGAAATCTATTACACAAGGG+AGG | 0.697899 | 1.2:-76483355 | None:intergenic |
| TATAGAAATCTATTACACAA+GGG | 0.701766 | 1.2:-76483358 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATAATGATGAAAATA+TGG | + | chr1.2:76482998-76483017 | MS.gene34394:intron | 15.0% |
| !!! | ATATTTTCATCATTATTACT+TGG | - | chr1.2:76482999-76483018 | None:intergenic | 15.0% |
| !! | ATCTCAATTGAAAAAATATC+TGG | + | chr1.2:76482649-76482668 | MS.gene34394:intron | 20.0% |
| !! | TATGTAAAAACGGTAAAAAA+CGG | + | chr1.2:76482765-76482784 | MS.gene34394:intron | 20.0% |
| !! | TTAGAGTTATAAACTAGATA+AGG | + | chr1.2:76482572-76482591 | MS.gene34394:intron | 20.0% |
| !!! | AGTTTTTCATTACATTTATC+AGG | + | chr1.2:76482332-76482351 | MS.gene34394:intron | 20.0% |
| !!! | ATTACCAAGGTTTTAAAAAA+CGG | + | chr1.2:76482393-76482412 | MS.gene34394:intron | 20.0% |
| !!! | TTTTGTTCACTATGTAAAAA+CGG | + | chr1.2:76482755-76482774 | MS.gene34394:intron | 20.0% |
| !!! | TTTTTAAAACCTTGGTAATT+GGG | - | chr1.2:76482392-76482411 | None:intergenic | 20.0% |
| !!! | TTTTTTAAAACCTTGGTAAT+TGG | - | chr1.2:76482393-76482412 | None:intergenic | 20.0% |
| ! | GAAAAAATATCTGGATTCTA+TGG | + | chr1.2:76482658-76482677 | MS.gene34394:intron | 25.0% |
| ! | TACATAGTGAACAAAAATCA+CGG | - | chr1.2:76482751-76482770 | None:intergenic | 25.0% |
| ! | TTCATTACATTTATCAGGAA+GGG | + | chr1.2:76482337-76482356 | MS.gene34394:intron | 25.0% |
| ! | TTGTTAAATTGGTTAACTCT+AGG | - | chr1.2:76482100-76482119 | None:intergenic | 25.0% |
| ! | TTTCATTACATTTATCAGGA+AGG | + | chr1.2:76482336-76482355 | MS.gene34394:intron | 25.0% |
| !! | TGTTTTCGAAAACAGATTTA+AGG | + | chr1.2:76482191-76482210 | MS.gene34394:intron | 25.0% |
| !!! | ATTGGCAAGGTTTTAAAAAA+CGG | - | chr1.2:76482842-76482861 | None:intergenic | 25.0% |
| AATGGAAGAATTGCTATGTT+GGG | + | chr1.2:76483294-76483313 | MS.gene34394:CDS | 30.0% | |
| GCATAATGCAACAAGTTAAT+GGG | + | chr1.2:76482248-76482267 | MS.gene34394:intron | 30.0% | |
| TATGTTGGGTTTAATTGCTT+TGG | + | chr1.2:76483308-76483327 | MS.gene34394:CDS | 30.0% | |
| TGCATAATGCAACAAGTTAA+TGG | + | chr1.2:76482247-76482266 | MS.gene34394:intron | 30.0% | |
| TTGTTTGATCAAATATCTGG+TGG | + | chr1.2:76483147-76483166 | MS.gene34394:CDS | 30.0% | |
| ! | GGTTTGTTTGATCAAATATC+TGG | + | chr1.2:76483144-76483163 | MS.gene34394:CDS | 30.0% |
| !! | TCTTTGATTCCATTTTTCCA+AGG | + | chr1.2:76483216-76483235 | MS.gene34394:CDS | 30.0% |
| ACACTAACACCTTGGAAAAA+TGG | - | chr1.2:76483228-76483247 | None:intergenic | 35.0% | |
| ACCCTTAACATACTCTGTAA+AGG | - | chr1.2:76483334-76483353 | None:intergenic | 35.0% | |
| CAGAAGGGATGTTGTTAAAT+TGG | - | chr1.2:76482111-76482130 | None:intergenic | 35.0% | |
| GAATGGAAGAATTGCTATGT+TGG | + | chr1.2:76483293-76483312 | MS.gene34394:CDS | 35.0% | |
| GCCTTTACAGAGTATGTTAA+GGG | + | chr1.2:76483330-76483349 | MS.gene34394:CDS | 35.0% | |
| TTTACTACTATGCTCACCTT+TGG | - | chr1.2:76482923-76482942 | None:intergenic | 35.0% | |
| TTTGATCAAATATCTGGTGG+TGG | + | chr1.2:76483150-76483169 | MS.gene34394:CDS | 35.0% | |
| ! | AGTGTTGAGTCTAAGTCAAA+AGG | + | chr1.2:76483243-76483262 | MS.gene34394:CDS | 35.0% |
| ! | CACAAAGTTTTCGGATTTGA+TGG | + | chr1.2:76483029-76483048 | MS.gene34394:CDS | 35.0% |
| !! | TTTTCGGATTTGATGGCATT+TGG | + | chr1.2:76483036-76483055 | MS.gene34394:CDS | 35.0% |
| !!! | AAGGTTTTAAAAAACGGTCG+CGG | + | chr1.2:76482399-76482418 | MS.gene34394:intron | 35.0% |
| !!! | ATTGGTTTTGTAGCTGCTAT+GGG | + | chr1.2:76483099-76483118 | MS.gene34394:CDS | 35.0% |
| AACCTATACTCGTTCACCAA+AGG | + | chr1.2:76482904-76482923 | MS.gene34394:intron | 40.0% | |
| AAGCTAGGCATATACACAGA+AGG | - | chr1.2:76482127-76482146 | None:intergenic | 40.0% | |
| AGCTAGGCATATACACAGAA+GGG | - | chr1.2:76482126-76482145 | None:intergenic | 40.0% | |
| CGACAAAAAGGTAAAGGTAG+CGG | - | chr1.2:76482797-76482816 | None:intergenic | 40.0% | |
| CGTATAGGATTTCGCGATTT+CGG | + | chr1.2:76482437-76482456 | MS.gene34394:intron | 40.0% | |
| GGCCTTTACAGAGTATGTTA+AGG | + | chr1.2:76483329-76483348 | MS.gene34394:CDS | 40.0% | |
| TAGACTCAACACTAACACCT+TGG | - | chr1.2:76483236-76483255 | None:intergenic | 40.0% | |
| TCAGATGCAGAACTATGGAA+TGG | + | chr1.2:76483276-76483295 | MS.gene34394:CDS | 40.0% | |
| TGAGAGAATCAATGGAAGGT+TGG | + | chr1.2:76483071-76483090 | MS.gene34394:CDS | 40.0% | |
| TGTATATGCCTAGCTTCAGA+AGG | + | chr1.2:76482131-76482150 | MS.gene34394:CDS | 40.0% | |
| TTTGGTGAACGAGTATAGGT+TGG | - | chr1.2:76482905-76482924 | None:intergenic | 40.0% | |
| ! | AATGGAAGGTTGGCTATGAT+TGG | + | chr1.2:76483081-76483100 | MS.gene34394:CDS | 40.0% |
| ! | ATTCCATAGTTCTGCATCTG+AGG | - | chr1.2:76483277-76483296 | None:intergenic | 40.0% |
| ! | CTACCTTTACCTTTTTGTCG+CGG | + | chr1.2:76482797-76482816 | MS.gene34394:intron | 40.0% |
| ! | GCAGATGAGCACAAAGTTTT+CGG | + | chr1.2:76483020-76483039 | MS.gene34394:intron | 40.0% |
| !! | AACCTTCCATTGATTCTCTC+AGG | - | chr1.2:76483072-76483091 | None:intergenic | 40.0% |
| !!! | GATTGGTTTTGTAGCTGCTA+TGG | + | chr1.2:76483098-76483117 | MS.gene34394:CDS | 40.0% |
| !!! | GCGACCGTTTTTTAAAACCT+TGG | - | chr1.2:76482400-76482419 | None:intergenic | 40.0% |
| !!! | TTGGTTTTGTAGCTGCTATG+GGG | + | chr1.2:76483100-76483119 | MS.gene34394:CDS | 40.0% |
| AGAAAAAGGCCGCGACAAAA+AGG | - | chr1.2:76482809-76482828 | None:intergenic | 45.0% | |
| CAAAGAAAGGCCGTTCATGA+CGG | - | chr1.2:76482687-76482706 | None:intergenic | 45.0% | |
| CACCTGAGAGAATCAATGGA+AGG | + | chr1.2:76483067-76483086 | MS.gene34394:CDS | 45.0% | |
| CACCTTTGGTGAACGAGTAT+AGG | - | chr1.2:76482909-76482928 | None:intergenic | 45.0% | |
| CGAAAACATTACCTCAGCCA+TGG | - | chr1.2:76482179-76482198 | None:intergenic | 45.0% | |
| CTTTATCGCAACACCCGTAA+CGG | - | chr1.2:76482463-76482482 | None:intergenic | 45.0% | |
| GATAAAGATTGCGGTTGTCG+CGG | + | chr1.2:76482476-76482495 | MS.gene34394:intron | 45.0% | |
| GGTGGAATTCCATGGTTCTT+GGG | + | chr1.2:76483168-76483187 | MS.gene34394:CDS | 45.0% | |
| GTGGAATTCCATGGTTCTTG+GGG | + | chr1.2:76483169-76483188 | MS.gene34394:CDS | 45.0% | |
| GTGGAGATAGCAAATGGACA+GGG | + | chr1.2:76483123-76483142 | MS.gene34394:CDS | 45.0% | |
| TCATGAACGGCCTTTCTTTG+CGG | + | chr1.2:76482687-76482706 | MS.gene34394:intron | 45.0% | |
| TCTATGGCTACCGTCATGAA+CGG | + | chr1.2:76482674-76482693 | MS.gene34394:intron | 45.0% | |
| TGGTGGAATTCCATGGTTCT+TGG | + | chr1.2:76483167-76483186 | MS.gene34394:CDS | 45.0% | |
| TGTCCTCAGATGCAGAACTA+TGG | + | chr1.2:76483271-76483290 | MS.gene34394:CDS | 45.0% | |
| TTAAAAAACGGTCGCGGTCA+AGG | + | chr1.2:76482405-76482424 | MS.gene34394:intron | 45.0% | |
| ! | ACCTTGGTAATTGGGTCTAC+AGG | - | chr1.2:76482384-76482403 | None:intergenic | 45.0% |
| ! | CGGATTTGATGGCATTTGGT+GGG | + | chr1.2:76483040-76483059 | MS.gene34394:CDS | 45.0% |
| ! | GGAATGCTAGCCTCAAAGTT+CGG | + | chr1.2:76482152-76482171 | MS.gene34394:CDS | 45.0% |
| ! | GGGTGTTGCGATAAAGATTG+CGG | + | chr1.2:76482467-76482486 | MS.gene34394:intron | 45.0% |
| ! | TCGGATTTGATGGCATTTGG+TGG | + | chr1.2:76483039-76483058 | MS.gene34394:CDS | 45.0% |
| ! | TTTTGTCGCGGCCTTTTTCT+CGG | + | chr1.2:76482809-76482828 | MS.gene34394:intron | 45.0% |
| !! | CTAGCATTCCTTCTGAAGCT+AGG | - | chr1.2:76482142-76482161 | None:intergenic | 45.0% |
| !! | GAACGAGTATAGGTTGGTTG+TGG | - | chr1.2:76482899-76482918 | None:intergenic | 45.0% |
| !! | GTATAGGTTGGTTGTGGTTG+TGG | - | chr1.2:76482893-76482912 | None:intergenic | 45.0% |
| !! | TATCTGGTGGTGGAATTCCA+TGG | + | chr1.2:76483160-76483179 | MS.gene34394:CDS | 45.0% |
| !! | TGATGGTGGTGTAATTGGCA+AGG | - | chr1.2:76482855-76482874 | None:intergenic | 45.0% |
| !!! | TGGTTTTGTAGCTGCTATGG+GGG | + | chr1.2:76483101-76483120 | MS.gene34394:CDS | 45.0% |
| ACACTTGTCCCCAAGAACCA+TGG | - | chr1.2:76483180-76483199 | None:intergenic | 50.0% | |
| ACCGTTACGACCGCAAAGAA+AGG | - | chr1.2:76482700-76482719 | None:intergenic | 50.0% | |
| ACGGTCCGTTACCGAGAAAA+AGG | - | chr1.2:76482823-76482842 | None:intergenic | 50.0% | |
| AGGCCGCGACAAAAAGGTAA+AGG | - | chr1.2:76482803-76482822 | None:intergenic | 50.0% | |
| AGGGCAGAAAGAGCAACCAA+AGG | + | chr1.2:76482356-76482375 | MS.gene34394:intron | 50.0% | |
| ATGGGGGTGGAGATAGCAAA+TGG | + | chr1.2:76483117-76483136 | MS.gene34394:CDS | 50.0% | |
| ATTGGGTCTACAGGCACCTT+TGG | - | chr1.2:76482375-76482394 | None:intergenic | 50.0% | |
| CCAGCACCTGAGAGAATCAA+TGG | + | chr1.2:76483063-76483082 | MS.gene34394:CDS | 50.0% | |
| GCCTGTAGACCCAATTACCA+AGG | + | chr1.2:76482380-76482399 | MS.gene34394:intron | 50.0% | |
| GCCTTTCTTTGCGGTCGTAA+CGG | + | chr1.2:76482696-76482715 | MS.gene34394:intron | 50.0% | |
| GGTGGAGATAGCAAATGGAC+AGG | + | chr1.2:76483122-76483141 | MS.gene34394:CDS | 50.0% | |
| TAGCCTCAAAGTTCGGTCCA+TGG | + | chr1.2:76482159-76482178 | MS.gene34394:CDS | 50.0% | |
| TGGTTAACTCTAGGCCTGCT+AGG | - | chr1.2:76482091-76482110 | None:intergenic | 50.0% | |
| TTTCGCGATTTCGGCCGTTA+CGG | + | chr1.2:76482446-76482465 | MS.gene34394:intron | 50.0% | |
| ! | TTTTGTAGCTGCTATGGGGG+TGG | + | chr1.2:76483104-76483123 | MS.gene34394:CDS | 50.0% |
| !! | CCATTGATTCTCTCAGGTGC+TGG | - | chr1.2:76483066-76483085 | None:intergenic | 50.0% |
| !! | GGTGCTGATGGTGGTGTAAT+TGG | - | chr1.2:76482860-76482879 | None:intergenic | 50.0% |
| !! | TAGGTTGGTTGTGGTTGTGG+TGG | - | chr1.2:76482890-76482909 | None:intergenic | 50.0% |
| CAAAGTTCGGTCCATGGCTG+AGG | + | chr1.2:76482165-76482184 | MS.gene34394:CDS | 55.0% | |
| CAGCCATGGACCGAACTTTG+AGG | - | chr1.2:76482165-76482184 | None:intergenic | 55.0% | |
| CCATGACCAGCATTCCTAGC+AGG | + | chr1.2:76482074-76482093 | MS.gene34394:CDS | 55.0% | |
| CCTGCTAGGAATGCTGGTCA+TGG | - | chr1.2:76482077-76482096 | None:intergenic | 55.0% | |
| GTCGTAACGGTGTTTCGTCG+CGG | + | chr1.2:76482709-76482728 | MS.gene34394:intron | 55.0% | |
| GTGTTTCGTCGCGGCTGTAA+CGG | + | chr1.2:76482718-76482737 | MS.gene34394:intron | 55.0% | |
| GTTGGTTGTGGTTGTGGTGG+TGG | - | chr1.2:76482887-76482906 | None:intergenic | 55.0% | |
| TCAAGGTCGCGGTCACGTAT+AGG | + | chr1.2:76482422-76482441 | MS.gene34394:intron | 55.0% | |
| TCTAGGCCTGCTAGGAATGC+TGG | - | chr1.2:76482083-76482102 | None:intergenic | 55.0% | |
| TTCGCGATTTCGGCCGTTAC+GGG | + | chr1.2:76482447-76482466 | MS.gene34394:intron | 55.0% | |
| ! | CGCGGCCTTTTTCTCGGTAA+CGG | + | chr1.2:76482815-76482834 | MS.gene34394:intron | 55.0% |
| !! | TGTGGTTGTGGTGGTGGAGT+TGG | - | chr1.2:76482881-76482900 | None:intergenic | 55.0% |
| !! | GGTGGAGTTGGTGCTGATGG+TGG | - | chr1.2:76482869-76482888 | None:intergenic | 60.0% |
| !! | GGTGGTGGAGTTGGTGCTGA+TGG | - | chr1.2:76482872-76482891 | None:intergenic | 60.0% |
| AACGGTCGCGGTCAAGGTCG+CGG | + | chr1.2:76482411-76482430 | MS.gene34394:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 76482037 | 76483368 | 76482037 | ID=MS.gene34394 |
| chr1.2 | mRNA | 76482037 | 76483368 | 76482037 | ID=MS.gene34394.t1;Parent=MS.gene34394 |
| chr1.2 | exon | 76482037 | 76482186 | 76482037 | ID=MS.gene34394.t1.exon1;Parent=MS.gene34394.t1 |
| chr1.2 | CDS | 76482037 | 76482186 | 76482037 | ID=cds.MS.gene34394.t1;Parent=MS.gene34394.t1 |
| chr1.2 | exon | 76483024 | 76483368 | 76483024 | ID=MS.gene34394.t1.exon2;Parent=MS.gene34394.t1 |
| chr1.2 | CDS | 76483024 | 76483368 | 76483024 | ID=cds.MS.gene34394.t1;Parent=MS.gene34394.t1 |
| Gene Sequence |
| Protein sequence |
