Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35005.t1 | RHN42290.1 | 99.3 | 149 | 1 | 0 | 66 | 214 | 152 | 300 | 5.70E-74 | 287.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35005.t1 | F4IP06 | 75.3 | 150 | 36 | 1 | 66 | 214 | 151 | 300 | 3.2e-57 | 223.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35005.t1 | A0A396GMM6 | 99.3 | 149 | 1 | 0 | 66 | 214 | 152 | 300 | 4.1e-74 | 287.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene35005 | 0.806447 | 8.19E-50 | -1.69E-46 |
| MS.gene049159 | MS.gene35005 | 0.819788 | 9.66E-53 | -1.69E-46 |
| MS.gene049341 | MS.gene35005 | 0.80833 | 3.27E-50 | -1.69E-46 |
| MS.gene049808 | MS.gene35005 | 0.81444 | 1.54E-51 | -1.69E-46 |
| MS.gene050689 | MS.gene35005 | 0.800588 | 1.34E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene35005 | 0.802112 | 6.55E-49 | -1.69E-46 |
| MS.gene051102 | MS.gene35005 | 0.806798 | 6.91E-50 | -1.69E-46 |
| MS.gene052516 | MS.gene35005 | 0.828877 | 7.04E-55 | -1.69E-46 |
| MS.gene052611 | MS.gene35005 | 0.82416 | 9.38E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene35005 | 0.810229 | 1.28E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene35005 | 0.824958 | 6.09E-54 | -1.69E-46 |
| MS.gene053079 | MS.gene35005 | 0.815705 | 8.06E-52 | -1.69E-46 |
| MS.gene053565 | MS.gene35005 | 0.803093 | 4.11E-49 | -1.69E-46 |
| MS.gene05462 | MS.gene35005 | 0.817718 | 2.85E-52 | -1.69E-46 |
| MS.gene055512 | MS.gene35005 | 0.832326 | 1.01E-55 | -1.69E-46 |
| MS.gene055890 | MS.gene35005 | 0.80846 | 3.06E-50 | -1.69E-46 |
| MS.gene055891 | MS.gene35005 | 0.805661 | 1.20E-49 | -1.69E-46 |
| MS.gene056553 | MS.gene35005 | 0.827498 | 1.51E-54 | -1.69E-46 |
| MS.gene057869 | MS.gene35005 | 0.801915 | 7.19E-49 | -1.69E-46 |
| MS.gene058010 | MS.gene35005 | 0.814168 | 1.77E-51 | -1.69E-46 |
| MS.gene059713 | MS.gene35005 | 0.8007 | 1.27E-48 | -1.69E-46 |
| MS.gene059937 | MS.gene35005 | 0.804051 | 2.60E-49 | -1.69E-46 |
| MS.gene060587 | MS.gene35005 | 0.800025 | 1.75E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35005.t1 | AT2G36740 | 74.839 | 155 | 38 | 1 | 61 | 214 | 146 | 300 | 1.33e-79 | 242 |
| MS.gene35005.t1 | AT2G36740 | 74.839 | 155 | 38 | 1 | 61 | 214 | 146 | 300 | 3.83e-79 | 240 |
Find 37 sgRNAs with CRISPR-Local
Find 220 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCATCATTATCATCAATTT+TGG | 0.077559 | 4.4:-18426546 | None:intergenic |
| GAAGAAAATCTTATCTAATT+TGG | 0.115613 | 4.4:+18426514 | MS.gene35005:CDS |
| AATTATGAACTTGAGGAATT+TGG | 0.176156 | 4.4:+18427516 | MS.gene35005:CDS |
| TCGCCTTTCTTCCTTATTAC+TGG | 0.196750 | 4.4:-18427333 | None:intergenic |
| GTGCATAAAACTGTCTTTAA+TGG | 0.216607 | 4.4:+18427583 | MS.gene35005:CDS |
| CAACCTGTTTGCGTTATTAC+TGG | 0.293930 | 4.4:+18429088 | MS.gene35005:CDS |
| GGCTGTTCTTCATCGGGTTC+AGG | 0.307025 | 4.4:-18426410 | None:intergenic |
| GCGAACAATGACGGAAGTTC+TGG | 0.369171 | 4.4:-18426642 | None:intergenic |
| ATAACGCAAACAGGTTGTTC+TGG | 0.392827 | 4.4:-18429082 | None:intergenic |
| CGTATTTGGAGTTTACTAAA+GGG | 0.400482 | 4.4:+18427725 | MS.gene35005:CDS |
| GCGTATGGCAGCCCAGTCTT+TGG | 0.402777 | 4.4:-18429298 | None:intergenic |
| GATATTGGAGATAACCTTGT+AGG | 0.403997 | 4.4:-18426705 | None:intergenic |
| ATACACTACATATCACAAAA+TGG | 0.416807 | 4.4:+18427613 | MS.gene35005:CDS |
| CTTCCTAATCATTACCTCCT+TGG | 0.455438 | 4.4:-18426615 | None:intergenic |
| CCTCCTTGGCATCATCGTCC+TGG | 0.471257 | 4.4:-18426601 | None:intergenic |
| TCGTATTTGGAGTTTACTAA+AGG | 0.472369 | 4.4:+18427724 | MS.gene35005:CDS |
| ATGCCAAGGAGGTAATGATT+AGG | 0.476554 | 4.4:+18426612 | MS.gene35005:CDS |
| GAATGGCTTCTCTTTCAGCT+TGG | 0.491571 | 4.4:-18426664 | None:intergenic |
| AAACCAGTAATAACGCAAAC+AGG | 0.498211 | 4.4:-18429091 | None:intergenic |
| AAGAAAGGCTCTTACTTGGC+AGG | 0.501328 | 4.4:-18429115 | None:intergenic |
| TTCAGCTTGGCGAACAATGA+CGG | 0.524822 | 4.4:-18426651 | None:intergenic |
| AGGTACCGTGATCCAAAGAC+TGG | 0.525622 | 4.4:+18429286 | MS.gene35005:intron |
| CTGCAGAAATTATGAACTTG+AGG | 0.529753 | 4.4:+18427509 | MS.gene35005:intron |
| TGCTTTGAGAGCTTCGCGAA+TGG | 0.533499 | 4.4:-18426681 | None:intergenic |
| AAAATTGATGATAATGATGA+CGG | 0.559093 | 4.4:+18426548 | MS.gene35005:CDS |
| CAGCCAGTAATAAGGAAGAA+AGG | 0.573774 | 4.4:+18427330 | MS.gene35005:intron |
| AGCTCTCAAAGCAACCTACA+AGG | 0.574053 | 4.4:+18426691 | MS.gene35005:CDS |
| GTATTTGGAGTTTACTAAAG+GGG | 0.598121 | 4.4:+18427726 | MS.gene35005:CDS |
| CGCACATTCTTGAGACGTTG+TGG | 0.601571 | 4.4:-18427770 | None:intergenic |
| GGAGAAGAAAATGTCACAAG+AGG | 0.609231 | 4.4:+18427356 | MS.gene35005:CDS |
| TGTGATATGTAGTGTATCTG+TGG | 0.609479 | 4.4:-18427607 | None:intergenic |
| GCAGCCCAGTCTTTGGATCA+CGG | 0.611548 | 4.4:-18429291 | None:intergenic |
| CAACCAGGACGATGATGCCA+AGG | 0.612779 | 4.4:+18426598 | MS.gene35005:CDS |
| AAACAACAAGAACAACAACC+AGG | 0.612812 | 4.4:+18426583 | MS.gene35005:CDS |
| AGTAATAAGGAAGAAAGGCG+AGG | 0.677909 | 4.4:+18427335 | MS.gene35005:CDS |
| CCAGGACGATGATGCCAAGG+AGG | 0.685706 | 4.4:+18426601 | MS.gene35005:CDS |
| GGTACCGTGATCCAAAGACT+GGG | 0.697285 | 4.4:+18429287 | MS.gene35005:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTTTCTTTTTTTTTT+TGG | + | chr4.4:18427305-18427324 | MS.gene35005:intron | 10.0% |
| !! | TTCAATACAAAAAAAATTGA+CGG | + | chr4.4:18428729-18428748 | MS.gene35005:intron | 15.0% |
| !!! | CTAACTAATTTTTGTAAATT+CGG | - | chr4.4:18428138-18428157 | None:intergenic | 15.0% |
| !!! | GTTTAATTAGTTTAAAGTTA+GGG | + | chr4.4:18428751-18428770 | MS.gene35005:intron | 15.0% |
| !! | AAATATAGTGCTAGAATAAA+AGG | - | chr4.4:18427798-18427817 | None:intergenic | 20.0% |
| !! | AACTTAAATGCTTATCATAT+AGG | - | chr4.4:18427223-18427242 | None:intergenic | 20.0% |
| !! | AATATAGTGCTAGAATAAAA+GGG | - | chr4.4:18427797-18427816 | None:intergenic | 20.0% |
| !! | CGAATTTACAAAAATTAGTT+AGG | + | chr4.4:18428136-18428155 | MS.gene35005:intron | 20.0% |
| !! | CTTATTTCAATAATCTTTCT+GGG | - | chr4.4:18427018-18427037 | None:intergenic | 20.0% |
| !! | GAAGAAAATCTTATCTAATT+TGG | + | chr4.4:18426514-18426533 | MS.gene35005:CDS | 20.0% |
| !! | GAATTCGTTAGATAAAAAAT+TGG | + | chr4.4:18428700-18428719 | MS.gene35005:intron | 20.0% |
| !! | TACAAAAATTAGTTAGGTTT+AGG | + | chr4.4:18428142-18428161 | MS.gene35005:intron | 20.0% |
| !! | TTAAAGTAGAAAAATGTTTC+AGG | + | chr4.4:18428504-18428523 | MS.gene35005:intron | 20.0% |
| !! | TTATTTCAATAATCTTTCTG+GGG | - | chr4.4:18427017-18427036 | None:intergenic | 20.0% |
| !!! | AAAATTGATGATAATGATGA+CGG | + | chr4.4:18426548-18426567 | MS.gene35005:CDS | 20.0% |
| !!! | ACTAAGTGTTTTAGATAATT+AGG | + | chr4.4:18428422-18428441 | MS.gene35005:intron | 20.0% |
| !!! | ATTTTTGTAAATTCGGTATT+TGG | - | chr4.4:18428131-18428150 | None:intergenic | 20.0% |
| !!! | CTAAGTGTTTTAGATAATTA+GGG | + | chr4.4:18428423-18428442 | MS.gene35005:intron | 20.0% |
| !!! | CTTTTAAAATAATTCGACAA+CGG | + | chr4.4:18429332-18429351 | MS.gene35005:CDS | 20.0% |
| !!! | GGTTTAATTAGTTTAAAGTT+AGG | + | chr4.4:18428750-18428769 | MS.gene35005:intron | 20.0% |
| !!! | GTAAAACTTTTTCTACTTAA+AGG | - | chr4.4:18428542-18428561 | None:intergenic | 20.0% |
| !!! | TCATCATTATCATCAATTTT+GGG | - | chr4.4:18426548-18426567 | None:intergenic | 20.0% |
| !!! | TTTATTCTAGCACTATATTT+TGG | + | chr4.4:18427798-18427817 | MS.gene35005:intron | 20.0% |
| !!! | TTTTATCTATTGTTGTGATA+AGG | - | chr4.4:18426946-18426965 | None:intergenic | 20.0% |
| ! | AAATTAGTTAGGTTTAGGAA+AGG | + | chr4.4:18428147-18428166 | MS.gene35005:intron | 25.0% |
| ! | AAGCATAATTGAAACATCAA+AGG | - | chr4.4:18427483-18427502 | None:intergenic | 25.0% |
| ! | AATAAGCTTATAACAGCTTA+TGG | + | chr4.4:18427032-18427051 | MS.gene35005:intron | 25.0% |
| ! | AATGAATAAAAAGAAGCGAT+TGG | + | chr4.4:18426451-18426470 | MS.gene35005:CDS | 25.0% |
| ! | AATGACGAAACAATTTCTTT+GGG | - | chr4.4:18427897-18427916 | None:intergenic | 25.0% |
| ! | AATTATGAACTTGAGGAATT+TGG | + | chr4.4:18427516-18427535 | MS.gene35005:CDS | 25.0% |
| ! | ACAGATTGCTATATGTAAAA+TGG | - | chr4.4:18427687-18427706 | None:intergenic | 25.0% |
| ! | ATACACTACATATCACAAAA+TGG | + | chr4.4:18427613-18427632 | MS.gene35005:CDS | 25.0% |
| ! | ATGTAATATATTCCGTTTCT+TGG | + | chr4.4:18427840-18427859 | MS.gene35005:intron | 25.0% |
| ! | ATGTATAGTAAACAATGAGT+AGG | + | chr4.4:18428185-18428204 | MS.gene35005:intron | 25.0% |
| ! | CTTAACAGAATCTATGTAAA+TGG | + | chr4.4:18427124-18427143 | MS.gene35005:intron | 25.0% |
| ! | GCTTATTTCAATAATCTTTC+TGG | - | chr4.4:18427019-18427038 | None:intergenic | 25.0% |
| ! | TAAGATTTGCAACTATGTAT+GGG | + | chr4.4:18428572-18428591 | MS.gene35005:intron | 25.0% |
| ! | TACATAGATTCTGTTAAGAT+TGG | - | chr4.4:18427122-18427141 | None:intergenic | 25.0% |
| ! | TGAATCACAGAAAAAGATAT+TGG | - | chr4.4:18426723-18426742 | None:intergenic | 25.0% |
| !! | ATCTTTTTCTGTGATTCATT+AGG | + | chr4.4:18426725-18426744 | MS.gene35005:intron | 25.0% |
| !! | GTCATCATTATCATCAATTT+TGG | - | chr4.4:18426549-18426568 | None:intergenic | 25.0% |
| !! | TATCTAAAACACTTAGTTGT+GGG | - | chr4.4:18428419-18428438 | None:intergenic | 25.0% |
| !! | TCTTTTTCTGTGATTCATTA+GGG | + | chr4.4:18426726-18426745 | MS.gene35005:intron | 25.0% |
| !! | TGATGTTTCAATTATGCTTT+TGG | + | chr4.4:18427484-18427503 | MS.gene35005:intron | 25.0% |
| !! | TTATCTAAAACACTTAGTTG+TGG | - | chr4.4:18428420-18428439 | None:intergenic | 25.0% |
| !!! | AGCAATCTGTTTATTTTTTC+AGG | + | chr4.4:18427697-18427716 | MS.gene35005:intron | 25.0% |
| AAAAAAAGAAGTAGTTCAGC+CGG | + | chr4.4:18429200-18429219 | MS.gene35005:intron | 30.0% | |
| ACATAGTTGCAAATCTTACT+AGG | - | chr4.4:18428570-18428589 | None:intergenic | 30.0% | |
| ACTACATATCACAAAATGGT+TGG | + | chr4.4:18427617-18427636 | MS.gene35005:intron | 30.0% | |
| ATAGACAAAGGGAAATATTC+CGG | - | chr4.4:18429222-18429241 | None:intergenic | 30.0% | |
| ATAGTAAACAATGAGTAGGA+AGG | + | chr4.4:18428189-18428208 | MS.gene35005:intron | 30.0% | |
| CAAAGAAATTGTTTCGTCAT+TGG | + | chr4.4:18427896-18427915 | MS.gene35005:intron | 30.0% | |
| CAATGACGAAACAATTTCTT+TGG | - | chr4.4:18427898-18427917 | None:intergenic | 30.0% | |
| CTATCTTGAAAAACAGCTTA+TGG | - | chr4.4:18426887-18426906 | None:intergenic | 30.0% | |
| CTGTACCTCAAATATTGTTA+AGG | + | chr4.4:18429247-18429266 | MS.gene35005:intron | 30.0% | |
| GAAAACTAAAACAAACAAGC+AGG | - | chr4.4:18427453-18427472 | None:intergenic | 30.0% | |
| GAACTCCTTAACAATATTTG+AGG | - | chr4.4:18429255-18429274 | None:intergenic | 30.0% | |
| GAACTTTATGAACCAAGAAA+CGG | - | chr4.4:18427855-18427874 | None:intergenic | 30.0% | |
| GGTCAATATTAGAATACACT+TGG | + | chr4.4:18427405-18427424 | MS.gene35005:intron | 30.0% | |
| GTAAGATTTGCAACTATGTA+TGG | + | chr4.4:18428571-18428590 | MS.gene35005:intron | 30.0% | |
| GTGCATAAAACTGTCTTTAA+TGG | + | chr4.4:18427583-18427602 | MS.gene35005:CDS | 30.0% | |
| TAATAATCCAACTGAACTAC+TGG | - | chr4.4:18429173-18429192 | None:intergenic | 30.0% | |
| TAGACAATAACTCGAATAAC+TGG | + | chr4.4:18427962-18427981 | MS.gene35005:intron | 30.0% | |
| TCACATCAATACATCAAGAA+AGG | - | chr4.4:18429133-18429152 | None:intergenic | 30.0% | |
| TGACATTATAACAAGTGCTA+AGG | + | chr4.4:18428055-18428074 | MS.gene35005:intron | 30.0% | |
| ! | AACATTTTCAGACCATAATC+AGG | - | chr4.4:18427288-18427307 | None:intergenic | 30.0% |
| ! | ATTCTTTCATCATCGTTTTG+TGG | - | chr4.4:18426434-18426453 | None:intergenic | 30.0% |
| ! | CGTATTTGGAGTTTACTAAA+GGG | + | chr4.4:18427725-18427744 | MS.gene35005:CDS | 30.0% |
| ! | GCAGTTGAACATAAATGTTT+TGG | + | chr4.4:18428079-18428098 | MS.gene35005:intron | 30.0% |
| ! | GTATTTGGAGTTTACTAAAG+GGG | + | chr4.4:18427726-18427745 | MS.gene35005:CDS | 30.0% |
| ! | TAACAATATTTGAGGTACAG+TGG | - | chr4.4:18429247-18429266 | None:intergenic | 30.0% |
| ! | TCATTATCATCAATTTTGGG+AGG | - | chr4.4:18426545-18426564 | None:intergenic | 30.0% |
| ! | TCGTATTTGGAGTTTACTAA+AGG | + | chr4.4:18427724-18427743 | MS.gene35005:CDS | 30.0% |
| ! | TGAGAAGAATTTAAAGTACC+CGG | + | chr4.4:18428924-18428943 | MS.gene35005:intron | 30.0% |
| !! | ATGTTGGTAACTCTTACAAA+TGG | + | chr4.4:18428857-18428876 | MS.gene35005:intron | 30.0% |
| !! | TGCATTTAGTTTGGTTGTAT+TGG | + | chr4.4:18427655-18427674 | MS.gene35005:intron | 30.0% |
| !! | TGTTGGTAACTCTTACAAAT+GGG | + | chr4.4:18428858-18428877 | MS.gene35005:intron | 30.0% |
| !!! | ATAAATGTTTTGGAGACCAA+GGG | + | chr4.4:18428089-18428108 | MS.gene35005:intron | 30.0% |
| !!! | TTTTTCAGGTTGTTCGTATT+TGG | + | chr4.4:18427711-18427730 | MS.gene35005:intron | 30.0% |
| AAACAACAAGAACAACAACC+AGG | + | chr4.4:18426583-18426602 | MS.gene35005:CDS | 35.0% | |
| AAACCAGTAATAACGCAAAC+AGG | - | chr4.4:18429094-18429113 | None:intergenic | 35.0% | |
| AAGTTAGGGTAGCTACTATA+TGG | + | chr4.4:18428765-18428784 | MS.gene35005:intron | 35.0% | |
| AATAACTGGACACATTCCAA+AGG | + | chr4.4:18427976-18427995 | MS.gene35005:intron | 35.0% | |
| ACAACCAAACTAAATGCACA+TGG | - | chr4.4:18427653-18427672 | None:intergenic | 35.0% | |
| AGATAGCTTATGCTTCTGTT+TGG | + | chr4.4:18426901-18426920 | MS.gene35005:intron | 35.0% | |
| ATAATATGCGAGGTTGAAGA+TGG | + | chr4.4:18428833-18428852 | MS.gene35005:intron | 35.0% | |
| ATGTATGGGTCAGAAATGTT+GGG | + | chr4.4:18428586-18428605 | MS.gene35005:intron | 35.0% | |
| CATTCCATGTGCATTTAGTT+TGG | + | chr4.4:18427646-18427665 | MS.gene35005:intron | 35.0% | |
| CTGCAGAAATTATGAACTTG+AGG | + | chr4.4:18427509-18427528 | MS.gene35005:intron | 35.0% | |
| CTTATAACAGCTTATGGACA+TGG | + | chr4.4:18427038-18427057 | MS.gene35005:intron | 35.0% | |
| GATATTGGAGATAACCTTGT+AGG | - | chr4.4:18426708-18426727 | None:intergenic | 35.0% | |
| GCAATCATGAGCATAAATGA+TGG | + | chr4.4:18428618-18428637 | MS.gene35005:intron | 35.0% | |
| GGGTGTATCTTACAAAAGAA+AGG | + | chr4.4:18428443-18428462 | MS.gene35005:intron | 35.0% | |
| GTAACTCTTACAAATGGGTA+GGG | + | chr4.4:18428863-18428882 | MS.gene35005:intron | 35.0% | |
| GTTCTTCTAAACAATATCCC+AGG | + | chr4.4:18427066-18427085 | MS.gene35005:intron | 35.0% | |
| TAACTCTTACAAATGGGTAG+GGG | + | chr4.4:18428864-18428883 | MS.gene35005:intron | 35.0% | |
| TACATAGAATTTCCTGATGC+CGG | - | chr4.4:18428946-18428965 | None:intergenic | 35.0% | |
| TATGTATGGGTCAGAAATGT+TGG | + | chr4.4:18428585-18428604 | MS.gene35005:intron | 35.0% | |
| TCTTGTGTAAAAACAGGGTA+AGG | - | chr4.4:18428314-18428333 | None:intergenic | 35.0% | |
| TGAGCATAAATGATGGTTGT+AGG | + | chr4.4:18428625-18428644 | MS.gene35005:intron | 35.0% | |
| TGTATTTGTGCTCATCTAGT+GGG | + | chr4.4:18426807-18426826 | MS.gene35005:intron | 35.0% | |
| TGTGATATGTAGTGTATCTG+TGG | - | chr4.4:18427610-18427629 | None:intergenic | 35.0% | |
| TTAGTTAGGTTTAGGAAAGG+AGG | + | chr4.4:18428150-18428169 | MS.gene35005:intron | 35.0% | |
| TTCAACCTCGCATATTATGA+AGG | - | chr4.4:18428831-18428850 | None:intergenic | 35.0% | |
| TTCCAAACAACACCTGATTA+TGG | + | chr4.4:18427273-18427292 | MS.gene35005:intron | 35.0% | |
| TTGATTACCAGTAGTTCAGT+TGG | + | chr4.4:18429163-18429182 | MS.gene35005:intron | 35.0% | |
| ! | AAAGCTTCTTTTGTAGCGTA+TGG | - | chr4.4:18429316-18429335 | None:intergenic | 35.0% |
| ! | AGCATTTAAGTTAGAAGCAC+TGG | + | chr4.4:18427231-18427250 | MS.gene35005:intron | 35.0% |
| ! | TTCAGATGGTATCATTTTGC+TGG | + | chr4.4:18428022-18428041 | MS.gene35005:intron | 35.0% |
| !!! | CATAAATGTTTTGGAGACCA+AGG | + | chr4.4:18428088-18428107 | MS.gene35005:intron | 35.0% |
| !!! | TTACCCTGTTTTTACACAAG+AGG | + | chr4.4:18428313-18428332 | MS.gene35005:intron | 35.0% |
| AACTCTTACAAATGGGTAGG+GGG | + | chr4.4:18428865-18428884 | MS.gene35005:intron | 40.0% | |
| AAGAAGCGATTGGTATATCC+TGG | + | chr4.4:18426461-18426480 | MS.gene35005:intron | 40.0% | |
| AAGGAGTTCTCTCTTGATAC+AGG | + | chr4.4:18429266-18429285 | MS.gene35005:intron | 40.0% | |
| ACAACTAAGTAAGGGCAATC+CGG | + | chr4.4:18428222-18428241 | MS.gene35005:intron | 40.0% | |
| ACAACTCAAGAGAAATCCCT+TGG | - | chr4.4:18428108-18428127 | None:intergenic | 40.0% | |
| ACAGCCTCTTGTGTAAAAAC+AGG | - | chr4.4:18428320-18428339 | None:intergenic | 40.0% | |
| ACATAGAATTTCCTGATGCC+GGG | - | chr4.4:18428945-18428964 | None:intergenic | 40.0% | |
| ACATGCCTTCATAATATGCG+AGG | + | chr4.4:18428823-18428842 | MS.gene35005:intron | 40.0% | |
| AGAAGCGATTGGTATATCCT+GGG | + | chr4.4:18426462-18426481 | MS.gene35005:intron | 40.0% | |
| AGTAATAAGGAAGAAAGGCG+AGG | + | chr4.4:18427335-18427354 | MS.gene35005:CDS | 40.0% | |
| ATAACGCAAACAGGTTGTTC+TGG | - | chr4.4:18429085-18429104 | None:intergenic | 40.0% | |
| ATCTACTAGCATAAGCACCT+GGG | - | chr4.4:18427086-18427105 | None:intergenic | 40.0% | |
| ATGATGGTTGTAGGAATGAG+TGG | + | chr4.4:18428634-18428653 | MS.gene35005:intron | 40.0% | |
| ATGCCAAGGAGGTAATGATT+AGG | + | chr4.4:18426612-18426631 | MS.gene35005:CDS | 40.0% | |
| ATGTCCCACAATATCCAAAC+AGG | + | chr4.4:18428476-18428495 | MS.gene35005:intron | 40.0% | |
| CAACCTGTTTGCGTTATTAC+TGG | + | chr4.4:18429088-18429107 | MS.gene35005:CDS | 40.0% | |
| CAGCCAGTAATAAGGAAGAA+AGG | + | chr4.4:18427330-18427349 | MS.gene35005:intron | 40.0% | |
| CAGCCTCTTGTGTAAAAACA+GGG | - | chr4.4:18428319-18428338 | None:intergenic | 40.0% | |
| CATCAAGAAAGGCTCTTACT+TGG | - | chr4.4:18429122-18429141 | None:intergenic | 40.0% | |
| CGTACAATACACCAAATGGT+GGG | - | chr4.4:18428288-18428307 | None:intergenic | 40.0% | |
| CTACTTTAACCTGTCCTGTT+TGG | - | chr4.4:18428493-18428512 | None:intergenic | 40.0% | |
| CTGTCCTGTTTGGATATTGT+GGG | - | chr4.4:18428483-18428502 | None:intergenic | 40.0% | |
| CTTCCTAATCATTACCTCCT+TGG | - | chr4.4:18426618-18426637 | None:intergenic | 40.0% | |
| GAGTACCCACAACTAAGTAA+GGG | + | chr4.4:18428214-18428233 | MS.gene35005:intron | 40.0% | |
| GATTGCCCTTACTTAGTTGT+GGG | - | chr4.4:18428222-18428241 | None:intergenic | 40.0% | |
| GCTCTCACAAATAATCTCAC+AGG | - | chr4.4:18426840-18426859 | None:intergenic | 40.0% | |
| GGAGAAGAAAATGTCACAAG+AGG | + | chr4.4:18427356-18427375 | MS.gene35005:CDS | 40.0% | |
| GGTAACTCTTACAAATGGGT+AGG | + | chr4.4:18428862-18428881 | MS.gene35005:intron | 40.0% | |
| GTACAGTGGCTATAGACAAA+GGG | - | chr4.4:18429233-18429252 | None:intergenic | 40.0% | |
| GTGTATTTGTGCTCATCTAG+TGG | + | chr4.4:18426806-18426825 | MS.gene35005:intron | 40.0% | |
| GTTGTTGTCATGTGACTGTA+AGG | - | chr4.4:18428364-18428383 | None:intergenic | 40.0% | |
| TATCTACTAGCATAAGCACC+TGG | - | chr4.4:18427087-18427106 | None:intergenic | 40.0% | |
| TCGCCTTTCTTCCTTATTAC+TGG | - | chr4.4:18427336-18427355 | None:intergenic | 40.0% | |
| TGTAGGAATGAGTGGAGTAT+GGG | + | chr4.4:18428642-18428661 | MS.gene35005:intron | 40.0% | |
| TTAGGTTTAGGAAAGGAGGA+TGG | + | chr4.4:18428154-18428173 | MS.gene35005:intron | 40.0% | |
| TTGTAGGAATGAGTGGAGTA+TGG | + | chr4.4:18428641-18428660 | MS.gene35005:intron | 40.0% | |
| ! | AATTTAAAGTACCCGGCATC+AGG | + | chr4.4:18428931-18428950 | MS.gene35005:intron | 40.0% |
| ! | AGAGTACCCACAACTAAGTA+AGG | + | chr4.4:18428213-18428232 | MS.gene35005:intron | 40.0% |
| ! | CATATTATGAAGGCATGTGG+TGG | - | chr4.4:18428821-18428840 | None:intergenic | 40.0% |
| ! | GTTTTGTGGCTGTTCTTCAT+CGG | - | chr4.4:18426420-18426439 | None:intergenic | 40.0% |
| ! | TCGCATATTATGAAGGCATG+TGG | - | chr4.4:18428824-18428843 | None:intergenic | 40.0% |
| ! | TTTTGTGGCTGTTCTTCATC+GGG | - | chr4.4:18426419-18426438 | None:intergenic | 40.0% |
| !! | CTTTTAGAAGCTGCTCAAAC+AGG | + | chr4.4:18427384-18427403 | MS.gene35005:CDS | 40.0% |
| !! | GACCATAATCAGGTGTTGTT+TGG | - | chr4.4:18427278-18427297 | None:intergenic | 40.0% |
| !!! | TTTTGGCTCAGCCAGTAATA+AGG | + | chr4.4:18427322-18427341 | MS.gene35005:intron | 40.0% |
| AAGAAAGGCTCTTACTTGGC+AGG | - | chr4.4:18429118-18429137 | None:intergenic | 45.0% | |
| ACATTCCAAAGGAAGGACCT+TGG | + | chr4.4:18427987-18428006 | MS.gene35005:intron | 45.0% | |
| ACTGGACACATTCCAAAGGA+AGG | + | chr4.4:18427980-18427999 | MS.gene35005:intron | 45.0% | |
| AGCTCTCAAAGCAACCTACA+AGG | + | chr4.4:18426691-18426710 | MS.gene35005:CDS | 45.0% | |
| CCACAATATCCAAACAGGAC+AGG | + | chr4.4:18428481-18428500 | MS.gene35005:intron | 45.0% | |
| CCTGTCCTGTTTGGATATTG+TGG | - | chr4.4:18428484-18428503 | None:intergenic | 45.0% | |
| CTGAAACAAAGCCTCTACCA+AGG | - | chr4.4:18428007-18428026 | None:intergenic | 45.0% | |
| GAATGGCTTCTCTTTCAGCT+TGG | - | chr4.4:18426667-18426686 | None:intergenic | 45.0% | |
| GCGTACAATACACCAAATGG+TGG | - | chr4.4:18428289-18428308 | None:intergenic | 45.0% | |
| GCTGCGTACAATACACCAAA+TGG | - | chr4.4:18428292-18428311 | None:intergenic | 45.0% | |
| GGATTGCCCTTACTTAGTTG+TGG | - | chr4.4:18428223-18428242 | None:intergenic | 45.0% | |
| GGTACAGTGGCTATAGACAA+AGG | - | chr4.4:18429234-18429253 | None:intergenic | 45.0% | |
| GTCATGTGACTGTAAGGTCA+CGG | - | chr4.4:18428358-18428377 | None:intergenic | 45.0% | |
| TCATGTGACTGTAAGGTCAC+GGG | - | chr4.4:18428357-18428376 | None:intergenic | 45.0% | |
| TTCAGCTTGGCGAACAATGA+CGG | - | chr4.4:18426654-18426673 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+GGG | - | chr4.4:18429005-18429024 | None:intergenic | 45.0% |
| ! | ACACTTAGTTGTGGGTACTG+AGG | - | chr4.4:18428411-18428430 | None:intergenic | 45.0% |
| ! | CAAGCCTTATCCCACTAAGT+GGG | - | chr4.4:18429006-18429025 | None:intergenic | 45.0% |
| ! | TTACACAAGAGGCTGTTTCC+AGG | + | chr4.4:18428324-18428343 | MS.gene35005:intron | 45.0% |
| !! | ACTTAGTTGTGGGTACTGAG+GGG | - | chr4.4:18428409-18428428 | None:intergenic | 45.0% |
| !! | CACTTAGTTGTGGGTACTGA+GGG | - | chr4.4:18428410-18428429 | None:intergenic | 45.0% |
| !! | GGTAGAGGCTTTGTTTCAGA+TGG | + | chr4.4:18428008-18428027 | MS.gene35005:intron | 45.0% |
| ACTGAAGCTTCCGCATATGC+AGG | + | chr4.4:18428248-18428267 | MS.gene35005:intron | 50.0% | |
| ATATCCTGGGAAGGCGACAT+TGG | + | chr4.4:18426475-18426494 | MS.gene35005:intron | 50.0% | |
| CAAAGGAAGGACCTTGGTAG+AGG | + | chr4.4:18427993-18428012 | MS.gene35005:intron | 50.0% | |
| CAACTTTACCAGTTGCGCCA+AGG | + | chr4.4:18428380-18428399 | MS.gene35005:intron | 50.0% | |
| CCACTTAGTGGGATAAGGCT+TGG | + | chr4.4:18429004-18429023 | MS.gene35005:intron | 50.0% | |
| CGAGGTTGAAGATGGCATGT+TGG | + | chr4.4:18428841-18428860 | MS.gene35005:intron | 50.0% | |
| CGCACATTCTTGAGACGTTG+TGG | - | chr4.4:18427773-18427792 | None:intergenic | 50.0% | |
| CTCTACCAAGGTCCTTCCTT+TGG | - | chr4.4:18427995-18428014 | None:intergenic | 50.0% | |
| CTGAAGCTTCCGCATATGCA+GGG | + | chr4.4:18428249-18428268 | MS.gene35005:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | - | chr4.4:18429001-18429020 | None:intergenic | 50.0% | |
| GCGATTGGTATATCCTGGGA+AGG | + | chr4.4:18426466-18426485 | MS.gene35005:intron | 50.0% | |
| GGTACCGTGATCCAAAGACT+GGG | + | chr4.4:18429287-18429306 | MS.gene35005:intron | 50.0% | |
| GTGGGCATACTGAGATGGAT+AGG | + | chr4.4:18428669-18428688 | MS.gene35005:intron | 50.0% | |
| TATAGCCGACCCCACTTAGT+GGG | + | chr4.4:18428993-18429012 | MS.gene35005:intron | 50.0% | |
| TTATAGCCGACCCCACTTAG+TGG | + | chr4.4:18428992-18429011 | MS.gene35005:intron | 50.0% | |
| ! | AGGTACCGTGATCCAAAGAC+TGG | + | chr4.4:18429286-18429305 | MS.gene35005:intron | 50.0% |
| ! | CCAAGCCTTATCCCACTAAG+TGG | - | chr4.4:18429007-18429026 | None:intergenic | 50.0% |
| ! | GCGAACAATGACGGAAGTTC+TGG | - | chr4.4:18426645-18426664 | None:intergenic | 50.0% |
| !! | TGCTTTGAGAGCTTCGCGAA+TGG | - | chr4.4:18426684-18426703 | None:intergenic | 50.0% |
| !!! | GGAGCGAGTTTTAGCTAGAG+AGG | + | chr4.4:18427537-18427556 | MS.gene35005:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | - | chr4.4:18428345-18428364 | None:intergenic | 55.0% | |
| ATGCGGAAGCTTCAGTGCAC+CGG | - | chr4.4:18428244-18428263 | None:intergenic | 55.0% | |
| CAACCAGGACGATGATGCCA+AGG | + | chr4.4:18426598-18426617 | MS.gene35005:CDS | 55.0% | |
| CATATGCAGGGTCCAGGAAG+GGG | + | chr4.4:18428261-18428280 | MS.gene35005:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | + | chr4.4:18428999-18429018 | MS.gene35005:intron | 55.0% | |
| CTTCCTGGACCCTGCATATG+CGG | - | chr4.4:18428261-18428280 | None:intergenic | 55.0% | |
| GACGAGTGGGCATACTGAGA+TGG | + | chr4.4:18428664-18428683 | MS.gene35005:intron | 55.0% | |
| GAGTGGAGTATGGGACGAGT+GGG | + | chr4.4:18428651-18428670 | MS.gene35005:intron | 55.0% | |
| GCAGCCCAGTCTTTGGATCA+CGG | - | chr4.4:18429294-18429313 | None:intergenic | 55.0% | |
| GCATATGCAGGGTCCAGGAA+GGG | + | chr4.4:18428260-18428279 | MS.gene35005:intron | 55.0% | |
| GGCTGTTCTTCATCGGGTTC+AGG | - | chr4.4:18426413-18426432 | None:intergenic | 55.0% | |
| TGAGTGGAGTATGGGACGAG+TGG | + | chr4.4:18428650-18428669 | MS.gene35005:intron | 55.0% | |
| TTAGCCAATGTCGCCTTCCC+AGG | - | chr4.4:18426482-18426501 | None:intergenic | 55.0% | |
| !! | TGGGTACTGAGGGGTAACCT+TGG | - | chr4.4:18428400-18428419 | None:intergenic | 55.0% |
| AGGGGTAACCTTGGCGCAAC+TGG | - | chr4.4:18428391-18428410 | None:intergenic | 60.0% | |
| CAGGAAGGGGTCCCACCATT+TGG | + | chr4.4:18428274-18428293 | MS.gene35005:intron | 60.0% | |
| CCAGGACGATGATGCCAAGG+AGG | + | chr4.4:18426601-18426620 | MS.gene35005:CDS | 60.0% | |
| CCTCCTTGGCATCATCGTCC+TGG | - | chr4.4:18426604-18426623 | None:intergenic | 60.0% | |
| CGCATATGCAGGGTCCAGGA+AGG | + | chr4.4:18428259-18428278 | MS.gene35005:intron | 60.0% | |
| CTTCCGCATATGCAGGGTCC+AGG | + | chr4.4:18428255-18428274 | MS.gene35005:intron | 60.0% | |
| GCGTATGGCAGCCCAGTCTT+TGG | - | chr4.4:18429301-18429320 | None:intergenic | 60.0% | |
| ! | CAAATGGTGGGACCCCTTCC+TGG | - | chr4.4:18428276-18428295 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 18426407 | 18429353 | 18426407 | ID=MS.gene35005 |
| chr4.4 | mRNA | 18426407 | 18429353 | 18426407 | ID=MS.gene35005.t1;Parent=MS.gene35005 |
| chr4.4 | exon | 18426407 | 18426472 | 18426407 | ID=MS.gene35005.t1.exon1;Parent=MS.gene35005.t1 |
| chr4.4 | CDS | 18426407 | 18426472 | 18426407 | ID=cds.MS.gene35005.t1;Parent=MS.gene35005.t1 |
| chr4.4 | exon | 18426506 | 18426712 | 18426506 | ID=MS.gene35005.t1.exon2;Parent=MS.gene35005.t1 |
| chr4.4 | CDS | 18426506 | 18426712 | 18426506 | ID=cds.MS.gene35005.t1;Parent=MS.gene35005.t1 |
| chr4.4 | exon | 18427333 | 18427405 | 18427333 | ID=MS.gene35005.t1.exon3;Parent=MS.gene35005.t1 |
| chr4.4 | CDS | 18427333 | 18427405 | 18427333 | ID=cds.MS.gene35005.t1;Parent=MS.gene35005.t1 |
| chr4.4 | exon | 18427515 | 18427634 | 18427515 | ID=MS.gene35005.t1.exon4;Parent=MS.gene35005.t1 |
| chr4.4 | CDS | 18427515 | 18427634 | 18427515 | ID=cds.MS.gene35005.t1;Parent=MS.gene35005.t1 |
| chr4.4 | exon | 18427719 | 18427787 | 18427719 | ID=MS.gene35005.t1.exon5;Parent=MS.gene35005.t1 |
| chr4.4 | CDS | 18427719 | 18427787 | 18427719 | ID=cds.MS.gene35005.t1;Parent=MS.gene35005.t1 |
| chr4.4 | exon | 18429080 | 18429122 | 18429080 | ID=MS.gene35005.t1.exon6;Parent=MS.gene35005.t1 |
| chr4.4 | CDS | 18429080 | 18429122 | 18429080 | ID=cds.MS.gene35005.t1;Parent=MS.gene35005.t1 |
| chr4.4 | exon | 18429288 | 18429353 | 18429288 | ID=MS.gene35005.t1.exon7;Parent=MS.gene35005.t1 |
| chr4.4 | CDS | 18429288 | 18429353 | 18429288 | ID=cds.MS.gene35005.t1;Parent=MS.gene35005.t1 |
| Gene Sequence |
| Protein sequence |
