Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35128.t1 | XP_013457325.1 | 97.3 | 370 | 10 | 0 | 1 | 370 | 8 | 377 | 2.70E-204 | 721.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35128.t1 | A0A072UPV1 | 97.3 | 370 | 10 | 0 | 1 | 370 | 8 | 377 | 1.9e-204 | 721.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene35128 | MS.gene069406 | PPI |
| MS.gene63991 | MS.gene35128 | PPI |
| MS.gene69420 | MS.gene35128 | PPI |
| MS.gene24186 | MS.gene35128 | PPI |
| MS.gene42277 | MS.gene35128 | PPI |
| MS.gene35128 | MS.gene014442 | PPI |
| MS.gene35128 | MS.gene64194 | PPI |
| MS.gene27044 | MS.gene35128 | PPI |
| MS.gene064739 | MS.gene35128 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35128.t1 | MTR_4g094572 | 98.378 | 370 | 6 | 0 | 1 | 370 | 8 | 377 | 0.0 | 749 |
| MS.gene35128.t1 | MTR_5g077710 | 43.144 | 299 | 148 | 7 | 84 | 368 | 94 | 384 | 1.05e-78 | 247 |
| MS.gene35128.t1 | MTR_2g028590 | 40.604 | 298 | 156 | 7 | 84 | 368 | 174 | 463 | 2.37e-76 | 243 |
| MS.gene35128.t1 | MTR_2g028610 | 42.088 | 297 | 151 | 8 | 85 | 368 | 170 | 458 | 6.82e-76 | 242 |
| MS.gene35128.t1 | MTR_1g024005 | 32.847 | 411 | 222 | 8 | 2 | 368 | 24 | 424 | 2.32e-73 | 234 |
| MS.gene35128.t1 | MTR_3g113270 | 32.266 | 406 | 226 | 10 | 2 | 368 | 24 | 419 | 2.60e-70 | 226 |
| MS.gene35128.t1 | MTR_0010s0400 | 41.096 | 292 | 151 | 7 | 85 | 367 | 177 | 456 | 4.83e-62 | 206 |
| MS.gene35128.t1 | MTR_8g028460 | 38.158 | 304 | 161 | 8 | 82 | 367 | 191 | 485 | 5.31e-59 | 199 |
| MS.gene35128.t1 | MTR_3g071050 | 37.647 | 170 | 89 | 5 | 82 | 241 | 103 | 265 | 2.46e-29 | 114 |
| MS.gene35128.t1 | MTR_3g070620 | 39.130 | 138 | 72 | 4 | 171 | 306 | 62 | 189 | 7.43e-24 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35128.t1 | AT1G29790 | 66.923 | 390 | 92 | 8 | 1 | 370 | 6 | 378 | 0.0 | 515 |
| MS.gene35128.t1 | AT1G29790 | 66.923 | 390 | 92 | 8 | 1 | 370 | 6 | 378 | 0.0 | 515 |
| MS.gene35128.t1 | AT5G40830 | 34.406 | 404 | 211 | 11 | 2 | 367 | 24 | 411 | 4.52e-73 | 233 |
| MS.gene35128.t1 | AT5G40830 | 34.406 | 404 | 211 | 11 | 2 | 367 | 24 | 411 | 4.52e-73 | 233 |
| MS.gene35128.t1 | AT3G27230 | 34.000 | 400 | 216 | 9 | 2 | 368 | 24 | 408 | 2.21e-70 | 226 |
| MS.gene35128.t1 | AT5G40830 | 33.417 | 398 | 183 | 10 | 2 | 367 | 24 | 371 | 2.46e-67 | 217 |
| MS.gene35128.t1 | AT3G05390 | 40.753 | 292 | 152 | 7 | 85 | 367 | 180 | 459 | 5.83e-66 | 216 |
| MS.gene35128.t1 | AT4G01240 | 36.964 | 303 | 165 | 7 | 82 | 367 | 361 | 654 | 1.69e-57 | 198 |
Find 102 sgRNAs with CRISPR-Local
Find 128 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTGTTGGGGTTGGTATTT+TGG | 0.103389 | 4.4:-19654347 | None:intergenic |
| TACCTGATTCCTCTGTTATC+TGG | 0.165102 | 4.4:+19654631 | MS.gene35128:CDS |
| TAAGCCTTTGATTGCGAAAA+TGG | 0.167124 | 4.4:+19655154 | MS.gene35128:CDS |
| GGGATTGGTGGAAGTGGTTT+TGG | 0.169419 | 4.4:-19654264 | None:intergenic |
| CTTGATGTTGGTGGTGGTAC+TGG | 0.282533 | 4.4:+19654825 | MS.gene35128:CDS |
| CTCGATTTGTCCTTCTGATT+CGG | 0.322921 | 4.4:+19654485 | MS.gene35128:CDS |
| GAGGCGCGTGAGGTGGTTGA+TGG | 0.333827 | 4.4:-19654325 | None:intergenic |
| TGGTTGCTACCATTGCTATT+AGG | 0.349162 | 4.4:-19654191 | None:intergenic |
| CAGTGAGGCGGTTGCGTTAA+GGG | 0.357505 | 4.4:+19654920 | MS.gene35128:CDS |
| AAGAAAGTGAAGTGGGCAAC+AGG | 0.364196 | 4.4:+19655182 | MS.gene35128:CDS |
| GATCGCGAAATCAGCGAAAT+CGG | 0.372554 | 4.4:+19654788 | MS.gene35128:CDS |
| ATCTGAAGAAGCTGTTGAAC+TGG | 0.377068 | 4.4:-19654768 | None:intergenic |
| ACCTGATTCCTCTGTTATCT+GGG | 0.386515 | 4.4:+19654632 | MS.gene35128:CDS |
| GGCGGTGAATCGATGGATTC+CGG | 0.389269 | 4.4:+19655022 | MS.gene35128:CDS |
| TTGGACGGAGTTTGTTTCTT+CGG | 0.393300 | 4.4:-19654576 | None:intergenic |
| GAGTAGATCTGAAGGGATTG+AGG | 0.412355 | 4.4:-19654379 | None:intergenic |
| GAAGGTTCAAATCCGAGATC+AGG | 0.415306 | 4.4:-19654699 | None:intergenic |
| TGAGAGGTGGAGGGTATTTG+TGG | 0.416415 | 4.4:+19655087 | MS.gene35128:CDS |
| ACAGTGAGGCGGTTGCGTTA+AGG | 0.420442 | 4.4:+19654919 | MS.gene35128:CDS |
| ATGTACTTATGAAGAAGATC+AGG | 0.423330 | 4.4:-19654447 | None:intergenic |
| CAGCGGTTACCGATGTTTGA+TGG | 0.424081 | 4.4:+19654972 | MS.gene35128:CDS |
| CGGAGGAGTTCGTCGGGGAT+TGG | 0.428015 | 4.4:-19654279 | None:intergenic |
| TTACGGCTGGGGCTTGATGT+TGG | 0.437399 | 4.4:+19654813 | MS.gene35128:CDS |
| AAACAACGCCGGCGAGGGAG+AGG | 0.443660 | 4.4:-19654543 | None:intergenic |
| GAGTAGAGGAGTAGATCTGA+AGG | 0.444596 | 4.4:-19654387 | None:intergenic |
| CCATTGCTATTAGGAGAAGA+AGG | 0.457866 | 4.4:-19654182 | None:intergenic |
| CGGCTGGGGCTTGATGTTGG+TGG | 0.458823 | 4.4:+19654816 | MS.gene35128:CDS |
| TCAGGTAAGGAAGAAGGAAA+AGG | 0.465159 | 4.4:-19654615 | None:intergenic |
| AAGCCTTTGATTGCGAAAAT+GGG | 0.467826 | 4.4:+19655155 | MS.gene35128:CDS |
| AACGCAACCGCCTCACTGTA+AGG | 0.473749 | 4.4:-19654915 | None:intergenic |
| ATCGGTAACCGCTGCTGCAA+CGG | 0.476365 | 4.4:-19654963 | None:intergenic |
| AGGTGGAGGGTATTTGTGGC+TGG | 0.479355 | 4.4:+19655091 | MS.gene35128:CDS |
| TGGTGGTACTGGCTCATTTG+CGG | 0.479932 | 4.4:+19654836 | MS.gene35128:CDS |
| CAGGTAAGGAAGAAGGAAAA+GGG | 0.483236 | 4.4:-19654614 | None:intergenic |
| GTGGGAGGGCGGTGAATCGA+TGG | 0.484047 | 4.4:+19655015 | MS.gene35128:CDS |
| AACCGTCAAAACCCTGATCT+CGG | 0.488287 | 4.4:+19654687 | MS.gene35128:CDS |
| AGTTGACGGAGGAGTTCGTC+GGG | 0.488936 | 4.4:-19654285 | None:intergenic |
| TTTAGGGGATTGGAGAGTTG+TGG | 0.496838 | 4.4:-19654238 | None:intergenic |
| GTGGTTGATGGTGGCGCGTA+TGG | 0.497435 | 4.4:-19654313 | None:intergenic |
| ATTGGAGAGTTGTGGAGAGG+TGG | 0.498315 | 4.4:-19654230 | None:intergenic |
| GCTGAAAGCTTAATTCTTCG+CGG | 0.506282 | 4.4:+19654513 | MS.gene35128:CDS |
| GTGGTAGAGAGAGAGAATGT+TGG | 0.507068 | 4.4:-19654211 | None:intergenic |
| TCGTCGGGGATTGGTGGAAG+TGG | 0.507708 | 4.4:-19654270 | None:intergenic |
| TCCCAGATAACAGAGGAATC+AGG | 0.510420 | 4.4:-19654633 | None:intergenic |
| GAGGAATCAGGTAAGGAAGA+AGG | 0.511266 | 4.4:-19654621 | None:intergenic |
| AGGAGTTCGTCGGGGATTGG+TGG | 0.516755 | 4.4:-19654276 | None:intergenic |
| GATAGAGTGTTGAGAGGTGG+AGG | 0.517077 | 4.4:+19655077 | MS.gene35128:CDS |
| CTGGGGCTTGATGTTGGTGG+TGG | 0.522249 | 4.4:+19654819 | MS.gene35128:CDS |
| ATGGTGTCGTGGATATTGTT+CGG | 0.522500 | 4.4:+19654991 | MS.gene35128:CDS |
| ATGGATTCCGGTGACGATGT+TGG | 0.523220 | 4.4:+19655034 | MS.gene35128:CDS |
| TTGGTGAGAGGTGTGAGTAG+AGG | 0.528167 | 4.4:-19654401 | None:intergenic |
| TCGTGGATATTGTTCGGTGT+GGG | 0.528274 | 4.4:+19654997 | MS.gene35128:CDS |
| ACAGGGAATAAGACTGATGC+TGG | 0.531832 | 4.4:+19655200 | MS.gene35128:CDS |
| AGTAGAGGAGTAGATCTGAA+GGG | 0.535223 | 4.4:-19654386 | None:intergenic |
| TGCTGCAACGGAACATGAAG+CGG | 0.536548 | 4.4:-19654951 | None:intergenic |
| GGATATTGTTCGGTGTGGGA+GGG | 0.536790 | 4.4:+19655001 | MS.gene35128:CDS |
| TTATGACAAGAAGAAGCAAT+TGG | 0.537441 | 4.4:-19654420 | None:intergenic |
| TTGCGGCGGCGATGAAAGTA+CGG | 0.539661 | 4.4:+19654853 | MS.gene35128:CDS |
| GATAACAGAGGAATCAGGTA+AGG | 0.541159 | 4.4:-19654628 | None:intergenic |
| TGGATATTGTTCGGTGTGGG+AGG | 0.543086 | 4.4:+19655000 | MS.gene35128:CDS |
| CGCGTATGGTGTGAAGTTGA+CGG | 0.548668 | 4.4:-19654299 | None:intergenic |
| GAGAAGAAGGTTTAGTGTCA+TGG | 0.552063 | 4.4:-19654169 | None:intergenic |
| GAGAGAAACAACGCCGGCGA+GGG | 0.553700 | 4.4:-19654548 | None:intergenic |
| AAGGTTCAAATCCGAGATCA+GGG | 0.554632 | 4.4:-19654698 | None:intergenic |
| TATTGTTCGGTGTGGGAGGG+CGG | 0.561682 | 4.4:+19655004 | MS.gene35128:CDS |
| AGTGAGGCGGTTGCGTTAAG+GGG | 0.563157 | 4.4:+19654921 | MS.gene35128:CDS |
| TCTGAAGAAGCTGTTGAACT+GGG | 0.564387 | 4.4:-19654767 | None:intergenic |
| TTCATGTTCCGTTGCAGCAG+CGG | 0.564533 | 4.4:+19654955 | MS.gene35128:CDS |
| GGGTTACAAGAAAGTGAAGT+GGG | 0.565136 | 4.4:+19655175 | MS.gene35128:CDS |
| GGAGTTTGTTTCTTCGGCGT+CGG | 0.566366 | 4.4:-19654570 | None:intergenic |
| GTTGTCATCCTCTCCCTCGC+CGG | 0.574392 | 4.4:+19654535 | MS.gene35128:CDS |
| AACTTAGAAACTTCACGAGA+AGG | 0.584495 | 4.4:-19654717 | None:intergenic |
| GATGTTGATAGAGTGTTGAG+AGG | 0.584870 | 4.4:+19655071 | MS.gene35128:CDS |
| CCTTCTTCTCCTAATAGCAA+TGG | 0.585257 | 4.4:+19654182 | MS.gene35128:CDS |
| AAGTTGACGGAGGAGTTCGT+CGG | 0.588114 | 4.4:-19654286 | None:intergenic |
| GCGCGTGAGGTGGTTGATGG+TGG | 0.589502 | 4.4:-19654322 | None:intergenic |
| GTCGTGGATATTGTTCGGTG+TGG | 0.593818 | 4.4:+19654996 | MS.gene35128:CDS |
| GGGATTGGAGAGTTGTGGAG+AGG | 0.598949 | 4.4:-19654233 | None:intergenic |
| GATGAAAGTACGGAATGTTA+CGG | 0.601069 | 4.4:+19654863 | MS.gene35128:CDS |
| AGAAAGTGAAGTGGGCAACA+GGG | 0.602756 | 4.4:+19655183 | MS.gene35128:CDS |
| ACCGATGTTTGATGGTGTCG+TGG | 0.615004 | 4.4:+19654980 | MS.gene35128:CDS |
| TCAGCGAGTTCCGAATCAGA+AGG | 0.620621 | 4.4:-19654495 | None:intergenic |
| GATGCTGGTGGTGTTAAGCA+TGG | 0.624372 | 4.4:+19655215 | MS.gene35128:CDS |
| GGAGAGAAACAACGCCGGCG+AGG | 0.631888 | 4.4:-19654549 | None:intergenic |
| GTTGATAGAGTGTTGAGAGG+TGG | 0.635445 | 4.4:+19655074 | MS.gene35128:CDS |
| AAGAAGAAGCAATTGGTGAG+AGG | 0.636322 | 4.4:-19654413 | None:intergenic |
| TGTGACTCTCATCTTGAGAG+AGG | 0.637895 | 4.4:-19655269 | None:intergenic |
| ATAGAGTGTTGAGAGGTGGA+GGG | 0.639182 | 4.4:+19655078 | MS.gene35128:CDS |
| TGGGTTACAAGAAAGTGAAG+TGG | 0.640685 | 4.4:+19655174 | MS.gene35128:CDS |
| TCAGAAGGACAAATCGAGAA+CGG | 0.641667 | 4.4:-19654480 | None:intergenic |
| TGTACTTATGAAGAAGATCA+GGG | 0.646506 | 4.4:-19654446 | None:intergenic |
| TCCACGACACCATCAAACAT+CGG | 0.670096 | 4.4:-19654981 | None:intergenic |
| TGGTACTGGCTCATTTGCGG+CGG | 0.680808 | 4.4:+19654839 | MS.gene35128:CDS |
| TGTAGCGCCTTACAGTGAGG+CGG | 0.694193 | 4.4:+19654908 | MS.gene35128:CDS |
| TGTTGTAGCGCCTTACAGTG+AGG | 0.710000 | 4.4:+19654905 | MS.gene35128:CDS |
| GAAAGTACGGAATGTTACGG+TGG | 0.724848 | 4.4:+19654866 | MS.gene35128:CDS |
| GCGTCGGAGAGAAACAACGC+CGG | 0.732120 | 4.4:-19654554 | None:intergenic |
| GTTGACGGAGGAGTTCGTCG+GGG | 0.738259 | 4.4:-19654284 | None:intergenic |
| ATAGCGATCCCAGATAACAG+AGG | 0.746663 | 4.4:-19654640 | None:intergenic |
| GTATGGTGTGAAGTTGACGG+AGG | 0.747861 | 4.4:-19654296 | None:intergenic |
| GGGAATAAGACTGATGCTGG+TGG | 0.765773 | 4.4:+19655203 | MS.gene35128:CDS |
| ACTTATGAAGAAGATCAGGG+TGG | 0.796058 | 4.4:-19654443 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ATGTACTTATGAAGAAGATC+AGG | - | chr4.4:19654450-19654469 | None:intergenic | 30.0% | |
| TGTACTTATGAAGAAGATCA+GGG | - | chr4.4:19654449-19654468 | None:intergenic | 30.0% | |
| TTATGACAAGAAGAAGCAAT+TGG | - | chr4.4:19654423-19654442 | None:intergenic | 30.0% | |
| !!! | CTGGACCATTTTTTTAGTAA+GGG | + | chr4.4:19655110-19655129 | MS.gene35128:CDS | 30.0% |
| AACTTAGAAACTTCACGAGA+AGG | - | chr4.4:19654720-19654739 | None:intergenic | 35.0% | |
| AAGCCTTTGATTGCGAAAAT+GGG | + | chr4.4:19655155-19655174 | MS.gene35128:CDS | 35.0% | |
| CCACACCCTTACTAAAAAAA+TGG | - | chr4.4:19655118-19655137 | None:intergenic | 35.0% | |
| TAAGCCTTTGATTGCGAAAA+TGG | + | chr4.4:19655154-19655173 | MS.gene35128:CDS | 35.0% | |
| ! | GATGAAAGTACGGAATGTTA+CGG | + | chr4.4:19654863-19654882 | MS.gene35128:CDS | 35.0% |
| ! | TAACCCATTTTCGCAATCAA+AGG | - | chr4.4:19655161-19655180 | None:intergenic | 35.0% |
| !! | AATCAGCGAAATCGGTTTTA+CGG | + | chr4.4:19654796-19654815 | MS.gene35128:CDS | 35.0% |
| !!! | CCATTTTTTTAGTAAGGGTG+TGG | + | chr4.4:19655115-19655134 | MS.gene35128:CDS | 35.0% |
| !!! | GAAGAAGGAAAAGGGTTTTT+TGG | - | chr4.4:19654609-19654628 | None:intergenic | 35.0% |
| !!! | GCTGGACCATTTTTTTAGTA+AGG | + | chr4.4:19655109-19655128 | MS.gene35128:CDS | 35.0% |
| !!! | TTTTTTGGAAGCGAATTGGA+CGG | - | chr4.4:19654594-19654613 | None:intergenic | 35.0% |
| AAAAACTCCAACATCGTCAC+CGG | - | chr4.4:19655044-19655063 | None:intergenic | 40.0% | |
| AAGAAGAAGCAATTGGTGAG+AGG | - | chr4.4:19654416-19654435 | None:intergenic | 40.0% | |
| AAGGTTCAAATCCGAGATCA+GGG | - | chr4.4:19654701-19654720 | None:intergenic | 40.0% | |
| ACCTGATTCCTCTGTTATCT+GGG | + | chr4.4:19654632-19654651 | MS.gene35128:CDS | 40.0% | |
| ACTTATGAAGAAGATCAGGG+TGG | - | chr4.4:19654446-19654465 | None:intergenic | 40.0% | |
| AGTAGAGGAGTAGATCTGAA+GGG | - | chr4.4:19654389-19654408 | None:intergenic | 40.0% | |
| ATCTGAAGAAGCTGTTGAAC+TGG | - | chr4.4:19654771-19654790 | None:intergenic | 40.0% | |
| CAGGTAAGGAAGAAGGAAAA+GGG | - | chr4.4:19654617-19654636 | None:intergenic | 40.0% | |
| CCTTCTTCTCCTAATAGCAA+TGG | + | chr4.4:19654182-19654201 | MS.gene35128:CDS | 40.0% | |
| GATAACAGAGGAATCAGGTA+AGG | - | chr4.4:19654631-19654650 | None:intergenic | 40.0% | |
| GCTGAAAGCTTAATTCTTCG+CGG | + | chr4.4:19654513-19654532 | MS.gene35128:CDS | 40.0% | |
| GGGTTACAAGAAAGTGAAGT+GGG | + | chr4.4:19655175-19655194 | MS.gene35128:CDS | 40.0% | |
| TACCTGATTCCTCTGTTATC+TGG | + | chr4.4:19654631-19654650 | MS.gene35128:CDS | 40.0% | |
| TCAGAAGGACAAATCGAGAA+CGG | - | chr4.4:19654483-19654502 | None:intergenic | 40.0% | |
| TCAGGTAAGGAAGAAGGAAA+AGG | - | chr4.4:19654618-19654637 | None:intergenic | 40.0% | |
| TCTGAAGAAGCTGTTGAACT+GGG | - | chr4.4:19654770-19654789 | None:intergenic | 40.0% | |
| TGGGTTACAAGAAAGTGAAG+TGG | + | chr4.4:19655174-19655193 | MS.gene35128:CDS | 40.0% | |
| ! | AGGGATTGAGGATTTTGTGT+TGG | - | chr4.4:19654370-19654389 | None:intergenic | 40.0% |
| ! | CCATTGCTATTAGGAGAAGA+AGG | - | chr4.4:19654185-19654204 | None:intergenic | 40.0% |
| ! | CTCGATTTGTCCTTCTGATT+CGG | + | chr4.4:19654485-19654504 | MS.gene35128:CDS | 40.0% |
| ! | TGGTTGCTACCATTGCTATT+AGG | - | chr4.4:19654194-19654213 | None:intergenic | 40.0% |
| ! | TTGGACGGAGTTTGTTTCTT+CGG | - | chr4.4:19654579-19654598 | None:intergenic | 40.0% |
| !! | ATGGTGTCGTGGATATTGTT+CGG | + | chr4.4:19654991-19655010 | MS.gene35128:CDS | 40.0% |
| !! | GAGGATTTTGTGTTGGTGTT+GGG | - | chr4.4:19654363-19654382 | None:intergenic | 40.0% |
| !! | GATGTTGATAGAGTGTTGAG+AGG | + | chr4.4:19655071-19655090 | MS.gene35128:CDS | 40.0% |
| !! | TGAGGATTTTGTGTTGGTGT+TGG | - | chr4.4:19654364-19654383 | None:intergenic | 40.0% |
| !!! | AAGTGGTTTTGGGGATTTAG+GGG | - | chr4.4:19654256-19654275 | None:intergenic | 40.0% |
| !!! | AGGATTTTGTGTTGGTGTTG+GGG | - | chr4.4:19654362-19654381 | None:intergenic | 40.0% |
| !!! | AGGGTTTTTTGGAAGCGAAT+TGG | - | chr4.4:19654598-19654617 | None:intergenic | 40.0% |
| !!! | GAAGTGGTTTTGGGGATTTA+GGG | - | chr4.4:19654257-19654276 | None:intergenic | 40.0% |
| AACCGTCAAAACCCTGATCT+CGG | + | chr4.4:19654687-19654706 | MS.gene35128:CDS | 45.0% | |
| AAGAAAGTGAAGTGGGCAAC+AGG | + | chr4.4:19655182-19655201 | MS.gene35128:CDS | 45.0% | |
| ACAGGGAATAAGACTGATGC+TGG | + | chr4.4:19655200-19655219 | MS.gene35128:CDS | 45.0% | |
| AGAAAGTGAAGTGGGCAACA+GGG | + | chr4.4:19655183-19655202 | MS.gene35128:CDS | 45.0% | |
| ATAGCGATCCCAGATAACAG+AGG | - | chr4.4:19654643-19654662 | None:intergenic | 45.0% | |
| GAAGGTTCAAATCCGAGATC+AGG | - | chr4.4:19654702-19654721 | None:intergenic | 45.0% | |
| GAGGAATCAGGTAAGGAAGA+AGG | - | chr4.4:19654624-19654643 | None:intergenic | 45.0% | |
| GAGTAGAGGAGTAGATCTGA+AGG | - | chr4.4:19654390-19654409 | None:intergenic | 45.0% | |
| GAGTAGATCTGAAGGGATTG+AGG | - | chr4.4:19654382-19654401 | None:intergenic | 45.0% | |
| GATCGCGAAATCAGCGAAAT+CGG | + | chr4.4:19654788-19654807 | MS.gene35128:CDS | 45.0% | |
| GTGGTAGAGAGAGAGAATGT+TGG | - | chr4.4:19654214-19654233 | None:intergenic | 45.0% | |
| TCCACGACACCATCAAACAT+CGG | - | chr4.4:19654984-19655003 | None:intergenic | 45.0% | |
| TCCCAGATAACAGAGGAATC+AGG | - | chr4.4:19654636-19654655 | None:intergenic | 45.0% | |
| TTTAGGGGATTGGAGAGTTG+TGG | - | chr4.4:19654241-19654260 | None:intergenic | 45.0% | |
| ! | GAAAGTACGGAATGTTACGG+TGG | + | chr4.4:19654866-19654885 | MS.gene35128:CDS | 45.0% |
| !! | ATAGAGTGTTGAGAGGTGGA+GGG | + | chr4.4:19655078-19655097 | MS.gene35128:CDS | 45.0% |
| !! | ATCCGAGATCAGGGTTTTGA+CGG | - | chr4.4:19654692-19654711 | None:intergenic | 45.0% |
| !! | GATTGGTGGAAGTGGTTTTG+GGG | - | chr4.4:19654265-19654284 | None:intergenic | 45.0% |
| !! | GGATTGGTGGAAGTGGTTTT+GGG | - | chr4.4:19654266-19654285 | None:intergenic | 45.0% |
| !! | GTTGATAGAGTGTTGAGAGG+TGG | + | chr4.4:19655074-19655093 | MS.gene35128:CDS | 45.0% |
| !! | TCGTGGATATTGTTCGGTGT+GGG | + | chr4.4:19654997-19655016 | MS.gene35128:CDS | 45.0% |
| !!! | GGAAGTGGTTTTGGGGATTT+AGG | - | chr4.4:19654258-19654277 | None:intergenic | 45.0% |
| !!! | GTTTTGGGGATTTAGGGGAT+TGG | - | chr4.4:19654251-19654270 | None:intergenic | 45.0% |
| !!! | TGGTGTTGGGGTTGGTATTT+TGG | - | chr4.4:19654350-19654369 | None:intergenic | 45.0% |
| !!! | TGTTGGGGTTGGTATTTTGG+AGG | - | chr4.4:19654347-19654366 | None:intergenic | 45.0% |
| !!! | TTTTGTGTTGGTGTTGGGGT+TGG | - | chr4.4:19654358-19654377 | None:intergenic | 45.0% |
| AAGTTGACGGAGGAGTTCGT+CGG | - | chr4.4:19654289-19654308 | None:intergenic | 50.0% | |
| ATGGATTCCGGTGACGATGT+TGG | + | chr4.4:19655034-19655053 | MS.gene35128:CDS | 50.0% | |
| ATTGGAGAGTTGTGGAGAGG+TGG | - | chr4.4:19654233-19654252 | None:intergenic | 50.0% | |
| CAGCGGTTACCGATGTTTGA+TGG | + | chr4.4:19654972-19654991 | MS.gene35128:CDS | 50.0% | |
| CGCGTATGGTGTGAAGTTGA+CGG | - | chr4.4:19654302-19654321 | None:intergenic | 50.0% | |
| GGGAATAAGACTGATGCTGG+TGG | + | chr4.4:19655203-19655222 | MS.gene35128:CDS | 50.0% | |
| GTATGGTGTGAAGTTGACGG+AGG | - | chr4.4:19654299-19654318 | None:intergenic | 50.0% | |
| TCAGCGAGTTCCGAATCAGA+AGG | - | chr4.4:19654498-19654517 | None:intergenic | 50.0% | |
| TGCTGCAACGGAACATGAAG+CGG | - | chr4.4:19654954-19654973 | None:intergenic | 50.0% | |
| TGTTGTAGCGCCTTACAGTG+AGG | + | chr4.4:19654905-19654924 | MS.gene35128:CDS | 50.0% | |
| TTCATGTTCCGTTGCAGCAG+CGG | + | chr4.4:19654955-19654974 | MS.gene35128:CDS | 50.0% | |
| ! | GATGCTGGTGGTGTTAAGCA+TGG | + | chr4.4:19655215-19655234 | MS.gene35128:CDS | 50.0% |
| ! | GGAGTTTGTTTCTTCGGCGT+CGG | - | chr4.4:19654573-19654592 | None:intergenic | 50.0% |
| ! | GTCGTGGATATTGTTCGGTG+TGG | + | chr4.4:19654996-19655015 | MS.gene35128:CDS | 50.0% |
| ! | TTGGTGAGAGGTGTGAGTAG+AGG | - | chr4.4:19654404-19654423 | None:intergenic | 50.0% |
| !! | ACCGATGTTTGATGGTGTCG+TGG | + | chr4.4:19654980-19654999 | MS.gene35128:CDS | 50.0% |
| !! | AGCGAAATCGGTTTTACGGC+TGG | + | chr4.4:19654800-19654819 | MS.gene35128:CDS | 50.0% |
| !! | CGAAATCGGTTTTACGGCTG+GGG | + | chr4.4:19654802-19654821 | MS.gene35128:CDS | 50.0% |
| !! | CTTGATGTTGGTGGTGGTAC+TGG | + | chr4.4:19654825-19654844 | MS.gene35128:CDS | 50.0% |
| !! | GATAGAGTGTTGAGAGGTGG+AGG | + | chr4.4:19655077-19655096 | MS.gene35128:CDS | 50.0% |
| !! | GCGAAATCGGTTTTACGGCT+GGG | + | chr4.4:19654801-19654820 | MS.gene35128:CDS | 50.0% |
| !! | GGATATTGTTCGGTGTGGGA+GGG | + | chr4.4:19655001-19655020 | MS.gene35128:CDS | 50.0% |
| !! | GGGATTGGTGGAAGTGGTTT+TGG | - | chr4.4:19654267-19654286 | None:intergenic | 50.0% |
| !! | TGAGAGGTGGAGGGTATTTG+TGG | + | chr4.4:19655087-19655106 | MS.gene35128:CDS | 50.0% |
| !! | TGGATATTGTTCGGTGTGGG+AGG | + | chr4.4:19655000-19655019 | MS.gene35128:CDS | 50.0% |
| !! | TGGTGGTACTGGCTCATTTG+CGG | + | chr4.4:19654836-19654855 | MS.gene35128:CDS | 50.0% |
| AACGCAACCGCCTCACTGTA+AGG | - | chr4.4:19654918-19654937 | None:intergenic | 55.0% | |
| ACAGTGAGGCGGTTGCGTTA+AGG | + | chr4.4:19654919-19654938 | MS.gene35128:CDS | 55.0% | |
| AGTGAGGCGGTTGCGTTAAG+GGG | + | chr4.4:19654921-19654940 | MS.gene35128:CDS | 55.0% | |
| AGTTGACGGAGGAGTTCGTC+GGG | - | chr4.4:19654288-19654307 | None:intergenic | 55.0% | |
| ATCGGTAACCGCTGCTGCAA+CGG | - | chr4.4:19654966-19654985 | None:intergenic | 55.0% | |
| CAGTGAGGCGGTTGCGTTAA+GGG | + | chr4.4:19654920-19654939 | MS.gene35128:CDS | 55.0% | |
| GGGATTGGAGAGTTGTGGAG+AGG | - | chr4.4:19654236-19654255 | None:intergenic | 55.0% | |
| TGTAGCGCCTTACAGTGAGG+CGG | + | chr4.4:19654908-19654927 | MS.gene35128:CDS | 55.0% | |
| TTACGGCTGGGGCTTGATGT+TGG | + | chr4.4:19654813-19654832 | MS.gene35128:CDS | 55.0% | |
| TTGCGGCGGCGATGAAAGTA+CGG | + | chr4.4:19654853-19654872 | MS.gene35128:CDS | 55.0% | |
| ! | GGCGGTGAATCGATGGATTC+CGG | + | chr4.4:19655022-19655041 | MS.gene35128:CDS | 55.0% |
| !! | AGGTGGAGGGTATTTGTGGC+TGG | + | chr4.4:19655091-19655110 | MS.gene35128:CDS | 55.0% |
| !! | TATTGTTCGGTGTGGGAGGG+CGG | + | chr4.4:19655004-19655023 | MS.gene35128:CDS | 55.0% |
| !! | TATTTTGGAGGCGCGTGAGG+TGG | - | chr4.4:19654335-19654354 | None:intergenic | 55.0% |
| !! | TGGTACTGGCTCATTTGCGG+CGG | + | chr4.4:19654839-19654858 | MS.gene35128:CDS | 55.0% |
| !! | TGGTATTTTGGAGGCGCGTG+AGG | - | chr4.4:19654338-19654357 | None:intergenic | 55.0% |
| AGGAGTTCGTCGGGGATTGG+TGG | - | chr4.4:19654279-19654298 | None:intergenic | 60.0% | |
| GAGAGAAACAACGCCGGCGA+GGG | - | chr4.4:19654551-19654570 | None:intergenic | 60.0% | |
| GCGTCGGAGAGAAACAACGC+CGG | - | chr4.4:19654557-19654576 | None:intergenic | 60.0% | |
| GTTGACGGAGGAGTTCGTCG+GGG | - | chr4.4:19654287-19654306 | None:intergenic | 60.0% | |
| GTTGTCATCCTCTCCCTCGC+CGG | + | chr4.4:19654535-19654554 | MS.gene35128:CDS | 60.0% | |
| ! | CTGGGGCTTGATGTTGGTGG+TGG | + | chr4.4:19654819-19654838 | MS.gene35128:CDS | 60.0% |
| ! | TCGTCGGGGATTGGTGGAAG+TGG | - | chr4.4:19654273-19654292 | None:intergenic | 60.0% |
| !! | GTGGTTGATGGTGGCGCGTA+TGG | - | chr4.4:19654316-19654335 | None:intergenic | 60.0% |
| AAACAACGCCGGCGAGGGAG+AGG | - | chr4.4:19654546-19654565 | None:intergenic | 65.0% | |
| CGGAGGAGTTCGTCGGGGAT+TGG | - | chr4.4:19654282-19654301 | None:intergenic | 65.0% | |
| CGGCTGGGGCTTGATGTTGG+TGG | + | chr4.4:19654816-19654835 | MS.gene35128:CDS | 65.0% | |
| GAGGCGCGTGAGGTGGTTGA+TGG | - | chr4.4:19654328-19654347 | None:intergenic | 65.0% | |
| GGAGAGAAACAACGCCGGCG+AGG | - | chr4.4:19654552-19654571 | None:intergenic | 65.0% | |
| GTGGGAGGGCGGTGAATCGA+TGG | + | chr4.4:19655015-19655034 | MS.gene35128:CDS | 65.0% | |
| !! | GCGCGTGAGGTGGTTGATGG+TGG | - | chr4.4:19654325-19654344 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 19654171 | 19655283 | 19654171 | ID=MS.gene35128 |
| chr4.4 | mRNA | 19654171 | 19655283 | 19654171 | ID=MS.gene35128.t1;Parent=MS.gene35128 |
| chr4.4 | exon | 19654171 | 19655283 | 19654171 | ID=MS.gene35128.t1.exon1;Parent=MS.gene35128.t1 |
| chr4.4 | CDS | 19654171 | 19655283 | 19654171 | ID=cds.MS.gene35128.t1;Parent=MS.gene35128.t1 |
| Gene Sequence |
| Protein sequence |
