Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35271.t1 | XP_003612790.3 | 89.2 | 582 | 27 | 2 | 1 | 546 | 1 | 582 | 1.40E-182 | 649.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35271.t1 | A0A396HQK4 | 84.2 | 582 | 27 | 3 | 1 | 546 | 1 | 553 | 2.0e-181 | 645.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene35271 | 0.839978 | 1.15E-57 | -1.69E-46 |
| MS.gene049501 | MS.gene35271 | 0.806742 | 7.09E-50 | -1.69E-46 |
| MS.gene050815 | MS.gene35271 | 0.827086 | 1.90E-54 | -1.69E-46 |
| MS.gene050941 | MS.gene35271 | 0.802633 | 5.11E-49 | -1.69E-46 |
| MS.gene051243 | MS.gene35271 | 0.800588 | 1.34E-48 | -1.69E-46 |
| MS.gene051328 | MS.gene35271 | 0.824415 | 8.17E-54 | -1.69E-46 |
| MS.gene052863 | MS.gene35271 | 0.807536 | 4.82E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene35271 | 0.827496 | 1.52E-54 | -1.69E-46 |
| MS.gene053008 | MS.gene35271 | 0.84491 | 5.64E-59 | -1.69E-46 |
| MS.gene053381 | MS.gene35271 | 0.826522 | 2.59E-54 | -1.69E-46 |
| MS.gene054472 | MS.gene35271 | 0.800117 | 1.68E-48 | -1.69E-46 |
| MS.gene054823 | MS.gene35271 | 0.804398 | 2.20E-49 | -1.69E-46 |
| MS.gene055468 | MS.gene35271 | 0.800192 | 1.62E-48 | -1.69E-46 |
| MS.gene056432 | MS.gene35271 | 0.800423 | 1.45E-48 | -1.69E-46 |
| MS.gene056760 | MS.gene35271 | 0.80872 | 2.70E-50 | -1.69E-46 |
| MS.gene057057 | MS.gene35271 | 0.817326 | 3.49E-52 | -1.69E-46 |
| MS.gene057140 | MS.gene35271 | 0.810046 | 1.40E-50 | -1.69E-46 |
| MS.gene058399 | MS.gene35271 | 0.81306 | 3.10E-51 | -1.69E-46 |
| MS.gene058549 | MS.gene35271 | 0.80112 | 1.05E-48 | -1.69E-46 |
| MS.gene058646 | MS.gene35271 | 0.820794 | 5.68E-53 | -1.69E-46 |
| MS.gene058654 | MS.gene35271 | 0.805617 | 1.22E-49 | -1.69E-46 |
| MS.gene058906 | MS.gene35271 | 0.819403 | 1.18E-52 | -1.69E-46 |
| MS.gene059249 | MS.gene35271 | 0.806606 | 7.58E-50 | -1.69E-46 |
| MS.gene059842 | MS.gene35271 | 0.825647 | 4.18E-54 | -1.69E-46 |
| MS.gene060683 | MS.gene35271 | 0.810736 | 9.94E-51 | -1.69E-46 |
| MS.gene060685 | MS.gene35271 | 0.807707 | 4.43E-50 | -1.69E-46 |
| MS.gene060803 | MS.gene35271 | 0.821245 | 4.47E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35271.t1 | MTR_5g029070 | 87.695 | 577 | 35 | 2 | 6 | 546 | 2 | 578 | 0.0 | 919 |
| MS.gene35271.t1 | MTR_5g029070 | 82.818 | 582 | 35 | 3 | 1 | 546 | 1 | 553 | 0.0 | 856 |
| MS.gene35271.t1 | MTR_5g097170 | 28.571 | 574 | 333 | 19 | 2 | 539 | 149 | 681 | 6.41e-51 | 186 |
| MS.gene35271.t1 | MTR_3g099170 | 41.558 | 231 | 128 | 3 | 316 | 541 | 549 | 777 | 2.03e-47 | 177 |
| MS.gene35271.t1 | MTR_3g082810 | 41.558 | 231 | 127 | 4 | 315 | 539 | 445 | 673 | 1.10e-46 | 174 |
| MS.gene35271.t1 | MTR_3g091040 | 39.147 | 258 | 141 | 5 | 291 | 542 | 445 | 692 | 5.41e-45 | 169 |
| MS.gene35271.t1 | MTR_1g060440 | 32.759 | 232 | 147 | 4 | 314 | 539 | 416 | 644 | 8.29e-37 | 145 |
| MS.gene35271.t1 | MTR_1g051765 | 33.929 | 224 | 140 | 7 | 319 | 539 | 145 | 363 | 3.30e-34 | 133 |
| MS.gene35271.t1 | MTR_6g059870 | 33.790 | 219 | 138 | 3 | 328 | 541 | 467 | 683 | 2.52e-33 | 135 |
| MS.gene35271.t1 | MTR_2g020420 | 33.047 | 233 | 143 | 7 | 316 | 541 | 444 | 670 | 2.66e-30 | 126 |
| MS.gene35271.t1 | MTR_2g020420 | 34.156 | 243 | 133 | 12 | 314 | 540 | 713 | 944 | 6.90e-25 | 109 |
| MS.gene35271.t1 | MTR_2g020420 | 33.047 | 233 | 143 | 7 | 316 | 541 | 431 | 657 | 2.75e-30 | 126 |
| MS.gene35271.t1 | MTR_2g020420 | 34.426 | 244 | 131 | 13 | 314 | 540 | 700 | 931 | 6.90e-25 | 109 |
| MS.gene35271.t1 | MTR_4g118660 | 34.043 | 235 | 143 | 6 | 319 | 546 | 474 | 703 | 7.95e-30 | 125 |
| MS.gene35271.t1 | MTR_4g118660 | 35.000 | 240 | 141 | 8 | 308 | 539 | 761 | 993 | 1.56e-27 | 118 |
| MS.gene35271.t1 | MTR_1g081970 | 30.342 | 234 | 151 | 7 | 314 | 539 | 419 | 648 | 9.57e-30 | 124 |
| MS.gene35271.t1 | MTR_7g114150 | 28.936 | 235 | 157 | 6 | 314 | 542 | 455 | 685 | 5.80e-25 | 110 |
| MS.gene35271.t1 | MTR_7g114150 | 32.287 | 223 | 128 | 8 | 323 | 535 | 870 | 1079 | 1.08e-22 | 103 |
| MS.gene35271.t1 | MTR_8g011080 | 32.243 | 214 | 121 | 8 | 340 | 546 | 419 | 615 | 8.05e-21 | 97.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene35271.t1 | AT2G35540 | 43.137 | 357 | 176 | 9 | 196 | 540 | 247 | 588 | 2.72e-76 | 252 |
| MS.gene35271.t1 | AT5G35753 | 35.470 | 234 | 142 | 5 | 316 | 543 | 196 | 426 | 1.37e-41 | 155 |
| MS.gene35271.t1 | AT2G05230 | 34.231 | 260 | 161 | 6 | 294 | 546 | 450 | 706 | 1.10e-40 | 157 |
| MS.gene35271.t1 | AT2G05250 | 34.231 | 260 | 161 | 6 | 294 | 546 | 450 | 706 | 1.10e-40 | 157 |
| MS.gene35271.t1 | AT5G53150 | 37.069 | 232 | 138 | 4 | 310 | 535 | 471 | 700 | 3.88e-38 | 149 |
| MS.gene35271.t1 | AT5G53150 | 37.069 | 232 | 138 | 4 | 310 | 535 | 471 | 700 | 3.88e-38 | 149 |
| MS.gene35271.t1 | AT5G53150 | 37.069 | 232 | 138 | 4 | 310 | 535 | 471 | 700 | 3.88e-38 | 149 |
| MS.gene35271.t1 | AT5G53150 | 36.515 | 241 | 145 | 4 | 301 | 535 | 433 | 671 | 4.24e-38 | 149 |
| MS.gene35271.t1 | AT5G53150 | 36.515 | 241 | 145 | 4 | 301 | 535 | 433 | 671 | 4.24e-38 | 149 |
| MS.gene35271.t1 | AT2G25560 | 39.827 | 231 | 129 | 5 | 315 | 539 | 423 | 649 | 1.57e-36 | 144 |
| MS.gene35271.t1 | AT5G50115 | 35.683 | 227 | 116 | 7 | 315 | 541 | 266 | 462 | 9.01e-29 | 120 |
| MS.gene35271.t1 | AT3G06340 | 29.661 | 236 | 153 | 5 | 309 | 538 | 421 | 649 | 5.42e-28 | 119 |
| MS.gene35271.t1 | AT3G06340 | 29.661 | 236 | 153 | 5 | 309 | 538 | 421 | 649 | 5.42e-28 | 119 |
| MS.gene35271.t1 | AT3G06340 | 29.661 | 236 | 153 | 5 | 309 | 538 | 421 | 649 | 5.42e-28 | 119 |
| MS.gene35271.t1 | AT3G06340 | 29.661 | 236 | 153 | 5 | 309 | 538 | 421 | 649 | 5.42e-28 | 119 |
| MS.gene35271.t1 | AT5G18750 | 29.134 | 254 | 163 | 7 | 296 | 538 | 379 | 626 | 2.53e-25 | 111 |
| MS.gene35271.t1 | AT5G18750 | 28.346 | 254 | 168 | 10 | 294 | 538 | 633 | 881 | 1.23e-18 | 90.5 |
| MS.gene35271.t1 | AT3G04980 | 27.126 | 247 | 157 | 7 | 309 | 545 | 483 | 716 | 1.44e-24 | 108 |
| MS.gene35271.t1 | AT3G04980 | 30.180 | 222 | 135 | 9 | 324 | 541 | 977 | 1182 | 4.72e-18 | 88.6 |
| MS.gene35271.t1 | AT3G04980 | 27.126 | 247 | 157 | 7 | 309 | 545 | 483 | 716 | 1.44e-24 | 108 |
| MS.gene35271.t1 | AT3G04980 | 30.180 | 222 | 135 | 9 | 324 | 541 | 977 | 1182 | 4.72e-18 | 88.6 |
| MS.gene35271.t1 | AT3G04980 | 27.126 | 247 | 157 | 7 | 309 | 545 | 465 | 698 | 1.58e-24 | 108 |
| MS.gene35271.t1 | AT3G04980 | 30.180 | 222 | 135 | 9 | 324 | 541 | 959 | 1164 | 4.85e-18 | 88.6 |
| MS.gene35271.t1 | AT5G18730 | 29.362 | 235 | 144 | 5 | 323 | 538 | 44 | 275 | 1.87e-24 | 107 |
| MS.gene35271.t1 | AT3G04960 | 30.120 | 249 | 151 | 8 | 294 | 535 | 252 | 484 | 7.51e-24 | 105 |
| MS.gene35271.t1 | AT5G18740 | 28.632 | 234 | 146 | 5 | 323 | 538 | 174 | 404 | 9.16e-24 | 104 |
| MS.gene35271.t1 | AT3G04960 | 30.120 | 249 | 151 | 8 | 294 | 535 | 301 | 533 | 9.87e-24 | 105 |
| MS.gene35271.t1 | AT3G04960 | 30.120 | 249 | 151 | 8 | 294 | 535 | 304 | 536 | 1.67e-23 | 104 |
| MS.gene35271.t1 | AT3G04960 | 30.120 | 249 | 151 | 8 | 294 | 535 | 353 | 585 | 1.93e-23 | 104 |
| MS.gene35271.t1 | AT4G27980 | 28.511 | 235 | 150 | 7 | 307 | 535 | 307 | 529 | 2.06e-20 | 95.1 |
| MS.gene35271.t1 | AT4G27980 | 28.511 | 235 | 150 | 7 | 307 | 535 | 344 | 566 | 2.18e-20 | 95.5 |
| MS.gene35271.t1 | AT4G27980 | 28.511 | 235 | 150 | 7 | 307 | 535 | 345 | 567 | 2.31e-20 | 95.1 |
| MS.gene35271.t1 | AT3G05110 | 32.701 | 211 | 120 | 8 | 315 | 518 | 158 | 353 | 1.41e-19 | 91.3 |
| MS.gene35271.t1 | AT5G27240 | 26.977 | 215 | 133 | 6 | 324 | 530 | 894 | 1092 | 1.79e-14 | 77.4 |
| MS.gene35271.t1 | AT5G27240 | 26.977 | 215 | 133 | 6 | 324 | 530 | 894 | 1092 | 1.79e-14 | 77.4 |
| MS.gene35271.t1 | AT5G27240 | 26.977 | 215 | 133 | 6 | 324 | 530 | 894 | 1092 | 1.79e-14 | 77.4 |
Find 143 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGTTTGAGAGAAAGTATT+TGG | 0.156491 | 5.4:+19436731 | MS.gene35271:CDS |
| CAACTTATCATCACGTTAAA+AGG | 0.163840 | 5.4:-19437770 | None:intergenic |
| GAAGAAGATGAATGGGAAAA+TGG | 0.211408 | 5.4:+19437076 | MS.gene35271:CDS |
| AAAAGAAAAGGAGGAGAAAA+TGG | 0.223877 | 5.4:+19437340 | MS.gene35271:CDS |
| GAAGAAGGGTATTGGGAAAA+TGG | 0.227761 | 5.4:+19436890 | MS.gene35271:CDS |
| AGGTATGGTGGTTGCGGATT+TGG | 0.251533 | 5.4:+19437442 | MS.gene35271:CDS |
| ATAGTTAGTAGAGAGAAATT+AGG | 0.252344 | 5.4:+19437824 | MS.gene35271:CDS |
| TGAACCTATGGAAGCCTTCT+TGG | 0.255735 | 5.4:-19437879 | None:intergenic |
| GGTGAAGTGGGTTGTGAAAA+AGG | 0.282882 | 5.4:+19436945 | MS.gene35271:CDS |
| TCACTCCCAACAACCATCTT+TGG | 0.283529 | 5.4:-19437245 | None:intergenic |
| GCGGTCGGTTGGGGAGGTTT+TGG | 0.284678 | 5.4:+19437211 | MS.gene35271:CDS |
| GGTTATGGCGGTTGCGGATT+CGG | 0.286832 | 5.4:+19437529 | MS.gene35271:CDS |
| TAGTTAGTAGAGAGAAATTA+GGG | 0.290359 | 5.4:+19437825 | MS.gene35271:CDS |
| CCTTCAGATTTACTTACTAT+TGG | 0.300974 | 5.4:+19438277 | MS.gene35271:CDS |
| TCTTTCCATCCCCATTGTTA+TGG | 0.315982 | 5.4:-19437802 | None:intergenic |
| TGGAGAGGAATTAGAGGTTA+TGG | 0.339470 | 5.4:+19437601 | MS.gene35271:CDS |
| TCCTAAGAAGGGTTCAGTTT+GGG | 0.345522 | 5.4:+19437964 | MS.gene35271:CDS |
| GAGTTTGAGAGAAAGTATTT+GGG | 0.354164 | 5.4:+19436732 | MS.gene35271:CDS |
| GGTGAAGTGGGTTGTGAAAA+TGG | 0.355602 | 5.4:+19437131 | MS.gene35271:CDS |
| GGTTATGGCAGTTGCGGATT+CGG | 0.360274 | 5.4:+19437616 | MS.gene35271:CDS |
| AGAAGAAGAAAATGAAACTT+TGG | 0.363734 | 5.4:+19436833 | MS.gene35271:CDS |
| GACTGCTTGTAATACTTGTA+AGG | 0.378528 | 5.4:+19436701 | MS.gene35271:CDS |
| GAAGAAGAAAATGAAACTTT+GGG | 0.380834 | 5.4:+19436834 | MS.gene35271:CDS |
| TGCTAGTGGAGAGGAATTAG+AGG | 0.387225 | 5.4:+19437595 | MS.gene35271:CDS |
| ATCCTAAGAAGGGTTCAGTT+TGG | 0.390524 | 5.4:+19437963 | MS.gene35271:CDS |
| GGGGAATAAGCTTGTGTGTC+CGG | 0.390587 | 5.4:+19436752 | MS.gene35271:CDS |
| TTGGATTCTGTGAAGAGAAA+AGG | 0.392753 | 5.4:+19437461 | MS.gene35271:CDS |
| GCCCAAACTGAACCCTTCTT+AGG | 0.394311 | 5.4:-19437965 | None:intergenic |
| TGAGATGAATGGTATAAGTA+TGG | 0.396471 | 5.4:+19438066 | MS.gene35271:CDS |
| TTACAAAATTTATCCTAAGA+AGG | 0.400310 | 5.4:+19437952 | MS.gene35271:CDS |
| ACATGAAGAAGAAGGGTATT+GGG | 0.405660 | 5.4:+19436883 | MS.gene35271:CDS |
| GGAAGAGAACGCGGTCGGTT+GGG | 0.406563 | 5.4:+19437201 | MS.gene35271:CDS |
| GATGATGAAGTGGGTATTGT+TGG | 0.408349 | 5.4:+19437170 | MS.gene35271:CDS |
| GCATATCTTGAGAAGGTTGA+TGG | 0.415074 | 5.4:+19438088 | MS.gene35271:CDS |
| AACATGAAGAAGAAGGGTAT+TGG | 0.415446 | 5.4:+19436882 | MS.gene35271:CDS |
| GAAGAAGAACATGAAGAAGA+AGG | 0.415755 | 5.4:+19436875 | MS.gene35271:CDS |
| TACTAGTGGAGAGGAATTAG+AGG | 0.416709 | 5.4:+19437508 | MS.gene35271:CDS |
| TGGAGAGGAATTAGAGGTTA+TGG | 0.421686 | 5.4:+19437514 | MS.gene35271:CDS |
| AACATGAAGAAGAAGATGAA+TGG | 0.424040 | 5.4:+19437068 | MS.gene35271:CDS |
| AAGAAGGGTATTGGGAAAAT+GGG | 0.426646 | 5.4:+19436891 | MS.gene35271:CDS |
| ACTAGTGGAGGGGAATTAGA+AGG | 0.428632 | 5.4:+19437422 | MS.gene35271:CDS |
| AAGAAGATGAATGGGAAAAT+GGG | 0.428753 | 5.4:+19437077 | MS.gene35271:CDS |
| GGTTGGATTTCCATAACAAT+GGG | 0.434258 | 5.4:+19437792 | MS.gene35271:CDS |
| TGGATTCTGTGAAGAGAAAA+GGG | 0.435541 | 5.4:+19437462 | MS.gene35271:CDS |
| ACATGAAGAAGAAGATGAAT+GGG | 0.441386 | 5.4:+19437069 | MS.gene35271:CDS |
| AGACTGTTGGGAGCTTGATC+CGG | 0.443550 | 5.4:+19438246 | MS.gene35271:CDS |
| TCGGATCCTGTGAAGAGAAA+AGG | 0.446818 | 5.4:+19437548 | MS.gene35271:CDS |
| TCTAAACCAAAGATGGTTGT+TGG | 0.447447 | 5.4:+19437239 | MS.gene35271:CDS |
| TTTAAGGGTAATGGTGAAGT+GGG | 0.449709 | 5.4:+19436933 | MS.gene35271:CDS |
| GAAGAGAACGCGGTCGGTTG+GGG | 0.451886 | 5.4:+19437202 | MS.gene35271:CDS |
| GGAGAGTTCTAAACCAAAGA+TGG | 0.452393 | 5.4:+19437232 | MS.gene35271:CDS |
| GAGGGTTCTGTGAGGAGAAA+GGG | 0.453665 | 5.4:+19437374 | MS.gene35271:CDS |
| TCAGATTTACTTACTATTGG+TGG | 0.458174 | 5.4:+19438280 | MS.gene35271:CDS |
| GAGATTTAAAGTTGCCAAGA+AGG | 0.460272 | 5.4:+19437865 | MS.gene35271:CDS |
| GAAGACATTTACTGAACCTA+TGG | 0.466859 | 5.4:-19437891 | None:intergenic |
| CTAAACCAAAGATGGTTGTT+GGG | 0.467203 | 5.4:+19437240 | MS.gene35271:CDS |
| ATTAGAGGTTATGGCGGTTG+CGG | 0.469315 | 5.4:+19437523 | MS.gene35271:CDS |
| TTGAAGGGTAATGGTGAAGT+GGG | 0.473321 | 5.4:+19437119 | MS.gene35271:CDS |
| GATGGTGAAGGGAAAAGAAA+AGG | 0.476908 | 5.4:+19437328 | MS.gene35271:CDS |
| TGGGTATTGTTGGGAGATTG+AGG | 0.478185 | 5.4:+19437180 | MS.gene35271:CDS |
| TACAAAATTTATCCTAAGAA+GGG | 0.481317 | 5.4:+19437953 | MS.gene35271:CDS |
| ATTAGAAGGTATGGTGGTTG+CGG | 0.482229 | 5.4:+19437436 | MS.gene35271:CDS |
| AAGAAGAACATGAAGAAGAA+GGG | 0.484729 | 5.4:+19436876 | MS.gene35271:CDS |
| TTGCGATCGGGCAGCGCGCG+AGG | 0.487386 | 5.4:+19437928 | MS.gene35271:CDS |
| TAGGGTTTAAAATACCTTGT+GGG | 0.489549 | 5.4:+19437843 | MS.gene35271:CDS |
| CTCATGTCGTCGATTGCGAT+CGG | 0.490398 | 5.4:+19437915 | MS.gene35271:CDS |
| AGGAAGAGAACGCGGTCGGT+TGG | 0.490546 | 5.4:+19437200 | MS.gene35271:CDS |
| TAACGTGATGATAAGTTGGT+TGG | 0.491640 | 5.4:+19437775 | MS.gene35271:CDS |
| GGGAATAAGCTTGTGTGTCC+GGG | 0.493214 | 5.4:+19436753 | MS.gene35271:CDS |
| GTTGAGATCTGAGAGGCATA+TGG | 0.497156 | 5.4:+19437571 | MS.gene35271:CDS |
| TGAGGGTTCTGTGAGGAGAA+AGG | 0.501606 | 5.4:+19437373 | MS.gene35271:CDS |
| GGTCGAGACTTGAGAGGCAC+AGG | 0.501652 | 5.4:+19437396 | MS.gene35271:CDS |
| TTTGAAGGGTAATGGTGAAG+TGG | 0.510072 | 5.4:+19437118 | MS.gene35271:CDS |
| CGGATCCTGTGAAGAGAAAA+GGG | 0.513830 | 5.4:+19437549 | MS.gene35271:CDS |
| GAGAACGCGGTCGGTTGGGG+AGG | 0.517601 | 5.4:+19437205 | MS.gene35271:CDS |
| ATGAATTGTTGAAAGACTGT+TGG | 0.519405 | 5.4:+19438233 | MS.gene35271:CDS |
| TGGTTGGATTTCCATAACAA+TGG | 0.523700 | 5.4:+19437791 | MS.gene35271:CDS |
| GTGTATGATGGTGATGATGA+TGG | 0.526875 | 5.4:+19437701 | MS.gene35271:CDS |
| TGAATTGTTGAAAGACTGTT+GGG | 0.532010 | 5.4:+19438234 | MS.gene35271:CDS |
| TGTTATGAATGATGAGTTTG+AGG | 0.532091 | 5.4:+19436806 | MS.gene35271:CDS |
| GATTTCCATAACAATGGGGA+TGG | 0.536962 | 5.4:+19437797 | MS.gene35271:CDS |
| TCATGTCGTCGATTGCGATC+GGG | 0.542308 | 5.4:+19437916 | MS.gene35271:CDS |
| TGGAGGGGAATTAGAAGGTA+TGG | 0.546089 | 5.4:+19437427 | MS.gene35271:CDS |
| ACAAGTTACAGTGAGATGAA+TGG | 0.546780 | 5.4:+19438055 | MS.gene35271:CDS |
| ATTAGAGGTTATGGCAGTTG+CGG | 0.551620 | 5.4:+19437610 | MS.gene35271:CDS |
| AATTCATGATCCTCGTCGCA+AGG | 0.552139 | 5.4:-19438217 | None:intergenic |
| CAAGTTTGGGCTGTGTATGA+TGG | 0.556152 | 5.4:+19437689 | MS.gene35271:CDS |
| TGGGAAAATGGGTTGTGAAA+AGG | 0.556504 | 5.4:+19437088 | MS.gene35271:CDS |
| ATTGGTGGCATAGATAATTG+AGG | 0.557425 | 5.4:+19438295 | MS.gene35271:CDS |
| AAAATGGAGAAGAAGCTTGA+GGG | 0.560242 | 5.4:+19437356 | MS.gene35271:CDS |
| GGTGAAGGGAAAAGAAAAGG+AGG | 0.561306 | 5.4:+19437331 | MS.gene35271:CDS |
| GAAAATGGAGAAGAAGCTTG+AGG | 0.563044 | 5.4:+19437355 | MS.gene35271:CDS |
| AAATCTGAAGGAAGTGAAGC+CGG | 0.563049 | 5.4:-19438265 | None:intergenic |
| TTTAAGGGTGATGATGAAGT+GGG | 0.572445 | 5.4:+19437161 | MS.gene35271:CDS |
| TTAAAACTCTTATTACATCC+CGG | 0.574922 | 5.4:-19436771 | None:intergenic |
| GGCGAGTCTTGATGCAGGTG+AGG | 0.575765 | 5.4:+19438000 | MS.gene35271:CDS |
| GAGAGGCATGTGGATACTAG+TGG | 0.581755 | 5.4:+19437494 | MS.gene35271:CDS |
| AAGAAGAAAATGAAACTTTG+GGG | 0.586059 | 5.4:+19436835 | MS.gene35271:CDS |
| GTTGCCAAGAAGGCTTCCAT+AGG | 0.588409 | 5.4:+19437875 | MS.gene35271:CDS |
| GCGAGTCTTGATGCAGGTGA+GGG | 0.589912 | 5.4:+19438001 | MS.gene35271:CDS |
| ATGATGAAGTGGGTATTGTT+GGG | 0.590619 | 5.4:+19437171 | MS.gene35271:CDS |
| GTGTTTAAGAGACAAGAGAG+TGG | 0.591607 | 5.4:+19438121 | MS.gene35271:CDS |
| TTGATAAAGATCGAGTGGAG+AGG | 0.594894 | 5.4:+19437651 | MS.gene35271:CDS |
| ATTCATGATCCTCGTCGCAA+GGG | 0.598622 | 5.4:-19438216 | None:intergenic |
| GAGAGGCATATGGATGCTAG+TGG | 0.600848 | 5.4:+19437581 | MS.gene35271:CDS |
| TTAGGGTTTAAAATACCTTG+TGG | 0.601833 | 5.4:+19437842 | MS.gene35271:CDS |
| TCAATCAGAACATATTGCCT+CGG | 0.603224 | 5.4:-19437728 | None:intergenic |
| TGTTTAAGAGACAAGAGAGT+GGG | 0.603598 | 5.4:+19438122 | MS.gene35271:CDS |
| CCAATAGTAAGTAAATCTGA+AGG | 0.606962 | 5.4:-19438277 | None:intergenic |
| GAGAAAGCTTCATCAAGAGA+TGG | 0.608896 | 5.4:+19437310 | MS.gene35271:CDS |
| AGTGAGGCGAGTCTTGATGC+AGG | 0.612149 | 5.4:+19437995 | MS.gene35271:CDS |
| GATGGTTGTTGGGAGTGAAG+AGG | 0.618340 | 5.4:+19437250 | MS.gene35271:CDS |
| AGTTTGAGAGAAAGTATTTG+GGG | 0.619105 | 5.4:+19436733 | MS.gene35271:CDS |
| GCTTCATCAAGAGATGGTGA+AGG | 0.622583 | 5.4:+19437316 | MS.gene35271:CDS |
| AAGTATGGCATATCTTGAGA+AGG | 0.623110 | 5.4:+19438081 | MS.gene35271:CDS |
| GGCACAGGGATACTAGTGGA+GGG | 0.623915 | 5.4:+19437411 | MS.gene35271:CDS |
| TCGCAAGGGAATTTCCGCGC+AGG | 0.625413 | 5.4:-19438202 | None:intergenic |
| CTTCATCAAGAGATGGTGAA+GGG | 0.628571 | 5.4:+19437317 | MS.gene35271:CDS |
| GAAAGGGGTCGAGACTTGAG+AGG | 0.629485 | 5.4:+19437390 | MS.gene35271:CDS |
| AGGCACAGGGATACTAGTGG+AGG | 0.630859 | 5.4:+19437410 | MS.gene35271:CDS |
| AGGGTTCTGTGAGGAGAAAG+GGG | 0.637256 | 5.4:+19437375 | MS.gene35271:CDS |
| AGAGGAATTAGAGGTTATGG+CGG | 0.638194 | 5.4:+19437517 | MS.gene35271:CDS |
| AGGGGAATTAGAAGGTATGG+TGG | 0.643351 | 5.4:+19437430 | MS.gene35271:CDS |
| GCACAGGGATACTAGTGGAG+GGG | 0.645296 | 5.4:+19437412 | MS.gene35271:CDS |
| AGTTTGGGCGCTTTACAGTG+AGG | 0.645814 | 5.4:+19437979 | MS.gene35271:CDS |
| AGAAGAAAATGAAACTTTGG+GGG | 0.647412 | 5.4:+19436836 | MS.gene35271:CDS |
| GTTGAGATCTGAGAGGCATG+TGG | 0.648335 | 5.4:+19437484 | MS.gene35271:CDS |
| ATTGAGGAAGAGAACGCGGT+CGG | 0.656084 | 5.4:+19437196 | MS.gene35271:CDS |
| GCATGTGGATACTAGTGGAG+AGG | 0.657075 | 5.4:+19437499 | MS.gene35271:CDS |
| GCATATGGATGCTAGTGGAG+AGG | 0.657075 | 5.4:+19437586 | MS.gene35271:CDS |
| AGAAGCTTGAGGGTTCTGTG+AGG | 0.659031 | 5.4:+19437366 | MS.gene35271:CDS |
| ACAAGAGAGTGGGAGTCATG+CGG | 0.661866 | 5.4:+19438132 | MS.gene35271:CDS |
| GTTGGATTTCCATAACAATG+GGG | 0.679276 | 5.4:+19437793 | MS.gene35271:CDS |
| GCAACTTTAAATCTCCCACA+AGG | 0.680984 | 5.4:-19437857 | None:intergenic |
| GAGAGGCACAGGGATACTAG+TGG | 0.683028 | 5.4:+19437407 | MS.gene35271:CDS |
| GTCGAGACTTGAGAGGCACA+GGG | 0.683704 | 5.4:+19437397 | MS.gene35271:CDS |
| GCGGAAATTCCCTTGCGACG+AGG | 0.697196 | 5.4:+19438207 | MS.gene35271:CDS |
| TATGAATGATGAGTTTGAGG+AGG | 0.701073 | 5.4:+19436809 | MS.gene35271:CDS |
| GAAAAGGGTTGAGATCTGAG+AGG | 0.724436 | 5.4:+19437477 | MS.gene35271:CDS |
| GAAAAGGGTTGAGATCTGAG+AGG | 0.724436 | 5.4:+19437564 | MS.gene35271:CDS |
| GGAGATTGAGGAAGAGAACG+CGG | 0.743265 | 5.4:+19437192 | MS.gene35271:CDS |
| TTTCTCATCAGATTCCTGCG+CGG | 0.774610 | 5.4:+19438188 | MS.gene35271:CDS |
| GTGATGATGATGGAATGCCG+AGG | 0.814192 | 5.4:+19437711 | MS.gene35271:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACAAAATTTATCCTAAGAA+GGG | + | chr5.4:19437953-19437972 | MS.gene35271:CDS | 20.0% |
| !! | TTACAAAATTTATCCTAAGA+AGG | + | chr5.4:19437952-19437971 | MS.gene35271:CDS | 20.0% |
| !!! | GAAAAAGATGAGATTTTTAA+GGG | + | chr5.4:19436918-19436937 | MS.gene35271:CDS | 20.0% |
| !!! | TGAAAAAGATGAGATTTTTA+AGG | + | chr5.4:19436917-19436936 | MS.gene35271:CDS | 20.0% |
| ! | AAGAAAAAGATAAGACTTTG+GGG | + | chr5.4:19437021-19437040 | MS.gene35271:CDS | 25.0% |
| ! | AAGAAGAAAATGAAACTTTG+GGG | + | chr5.4:19436835-19436854 | MS.gene35271:CDS | 25.0% |
| ! | AGAAGAAGAAAATGAAACTT+TGG | + | chr5.4:19436833-19436852 | MS.gene35271:CDS | 25.0% |
| ! | ATAGTTAGTAGAGAGAAATT+AGG | + | chr5.4:19437824-19437843 | MS.gene35271:CDS | 25.0% |
| ! | GAAGAAAAAGATAAGACTTT+GGG | + | chr5.4:19437020-19437039 | MS.gene35271:CDS | 25.0% |
| ! | GAAGAAGAAAATGAAACTTT+GGG | + | chr5.4:19436834-19436853 | MS.gene35271:CDS | 25.0% |
| ! | TAGTTAGTAGAGAGAAATTA+GGG | + | chr5.4:19437825-19437844 | MS.gene35271:CDS | 25.0% |
| ! | TGAAGAAAAAGATAAGACTT+TGG | + | chr5.4:19437019-19437038 | MS.gene35271:CDS | 25.0% |
| ! | TTAAAACTCTTATTACATCC+CGG | - | chr5.4:19436774-19436793 | None:intergenic | 25.0% |
| !! | GAAAATGGTGAGAATTTTAA+GGG | + | chr5.4:19437146-19437165 | MS.gene35271:CDS | 25.0% |
| !! | TGAAAATGGTGAGAATTTTA+AGG | + | chr5.4:19437145-19437164 | MS.gene35271:CDS | 25.0% |
| !!! | TTTTAAGAAAGGTCAAGTTT+GGG | + | chr5.4:19437676-19437695 | MS.gene35271:CDS | 25.0% |
| AAAAGAAAAGGAGGAGAAAA+TGG | + | chr5.4:19437340-19437359 | MS.gene35271:CDS | 30.0% | |
| AACATGAAGAAGAAGATGAA+TGG | + | chr5.4:19437068-19437087 | MS.gene35271:CDS | 30.0% | |
| AAGAAGAACATGAAGAAGAA+GGG | + | chr5.4:19436876-19436895 | MS.gene35271:CDS | 30.0% | |
| AAGAAGATGAATGGGAAAAT+GGG | + | chr5.4:19437077-19437096 | MS.gene35271:CDS | 30.0% | |
| ACATGAAGAAGAAGATGAAT+GGG | + | chr5.4:19437069-19437088 | MS.gene35271:CDS | 30.0% | |
| AGAAAAAGATAAGACTTTGG+GGG | + | chr5.4:19437022-19437041 | MS.gene35271:CDS | 30.0% | |
| AGAAGAAAATGAAACTTTGG+GGG | + | chr5.4:19436836-19436855 | MS.gene35271:CDS | 30.0% | |
| ATGAATTGTTGAAAGACTGT+TGG | + | chr5.4:19438233-19438252 | MS.gene35271:CDS | 30.0% | |
| CAACTTATCATCACGTTAAA+AGG | - | chr5.4:19437773-19437792 | None:intergenic | 30.0% | |
| CCAATAGTAAGTAAATCTGA+AGG | - | chr5.4:19438280-19438299 | None:intergenic | 30.0% | |
| CCTTCAGATTTACTTACTAT+TGG | + | chr5.4:19438277-19438296 | MS.gene35271:CDS | 30.0% | |
| TCAGATTTACTTACTATTGG+TGG | + | chr5.4:19438280-19438299 | MS.gene35271:CDS | 30.0% | |
| TGAATTGTTGAAAGACTGTT+GGG | + | chr5.4:19438234-19438253 | MS.gene35271:CDS | 30.0% | |
| TGAGATGAATGGTATAAGTA+TGG | + | chr5.4:19438066-19438085 | MS.gene35271:CDS | 30.0% | |
| TGTTATGAATGATGAGTTTG+AGG | + | chr5.4:19436806-19436825 | MS.gene35271:CDS | 30.0% | |
| ! | CTTTTAACGTGATGATAAGT+TGG | + | chr5.4:19437771-19437790 | MS.gene35271:CDS | 30.0% |
| ! | GAAAAGGATGAGATTTTGAA+GGG | + | chr5.4:19437104-19437123 | MS.gene35271:CDS | 30.0% |
| ! | GGGATGTAATAAGAGTTTTA+AGG | + | chr5.4:19436773-19436792 | MS.gene35271:CDS | 30.0% |
| ! | TAGGGTTTAAAATACCTTGT+GGG | + | chr5.4:19437843-19437862 | MS.gene35271:CDS | 30.0% |
| ! | TGAAAAAGGGGAGAATTTTA+AGG | + | chr5.4:19436959-19436978 | MS.gene35271:CDS | 30.0% |
| ! | TGAAAAGGATGAGATTTTGA+AGG | + | chr5.4:19437103-19437122 | MS.gene35271:CDS | 30.0% |
| ! | TTAGGGTTTAAAATACCTTG+TGG | + | chr5.4:19437842-19437861 | MS.gene35271:CDS | 30.0% |
| !! | AGTTTGAGAGAAAGTATTTG+GGG | + | chr5.4:19436733-19436752 | MS.gene35271:CDS | 30.0% |
| !! | GAGTTTGAGAGAAAGTATTT+GGG | + | chr5.4:19436732-19436751 | MS.gene35271:CDS | 30.0% |
| !! | GATGAGATTTTTAAGGGTAA+TGG | + | chr5.4:19436924-19436943 | MS.gene35271:CDS | 30.0% |
| !! | TGAGTTTGAGAGAAAGTATT+TGG | + | chr5.4:19436731-19436750 | MS.gene35271:CDS | 30.0% |
| !! | TGATTTTGATAAAGATCGAG+TGG | + | chr5.4:19437646-19437665 | MS.gene35271:CDS | 30.0% |
| !!! | GTTTTAAGAAAGGTCAAGTT+TGG | + | chr5.4:19437675-19437694 | MS.gene35271:CDS | 30.0% |
| AAAATGGAGAAGAAGCTTGA+GGG | + | chr5.4:19437356-19437375 | MS.gene35271:CDS | 35.0% | |
| AAGTATGGCATATCTTGAGA+AGG | + | chr5.4:19438081-19438100 | MS.gene35271:CDS | 35.0% | |
| ACAAGTTACAGTGAGATGAA+TGG | + | chr5.4:19438055-19438074 | MS.gene35271:CDS | 35.0% | |
| CTAAACCAAAGATGGTTGTT+GGG | + | chr5.4:19437240-19437259 | MS.gene35271:CDS | 35.0% | |
| GAAGAAGAACATGAAGAAGA+AGG | + | chr5.4:19436875-19436894 | MS.gene35271:CDS | 35.0% | |
| GAAGAAGATGAATGGGAAAA+TGG | + | chr5.4:19437076-19437095 | MS.gene35271:CDS | 35.0% | |
| GAAGACATTTACTGAACCTA+TGG | - | chr5.4:19437894-19437913 | None:intergenic | 35.0% | |
| GACTGCTTGTAATACTTGTA+AGG | + | chr5.4:19436701-19436720 | MS.gene35271:CDS | 35.0% | |
| GGTTGGATTTCCATAACAAT+GGG | + | chr5.4:19437792-19437811 | MS.gene35271:CDS | 35.0% | |
| GTTGGATTTCCATAACAATG+GGG | + | chr5.4:19437793-19437812 | MS.gene35271:CDS | 35.0% | |
| TATGAATGATGAGTTTGAGG+AGG | + | chr5.4:19436809-19436828 | MS.gene35271:CDS | 35.0% | |
| TCAATCAGAACATATTGCCT+CGG | - | chr5.4:19437731-19437750 | None:intergenic | 35.0% | |
| TCTAAACCAAAGATGGTTGT+TGG | + | chr5.4:19437239-19437258 | MS.gene35271:CDS | 35.0% | |
| TGGATTCTGTGAAGAGAAAA+GGG | + | chr5.4:19437462-19437481 | MS.gene35271:CDS | 35.0% | |
| TGGTTGGATTTCCATAACAA+TGG | + | chr5.4:19437791-19437810 | MS.gene35271:CDS | 35.0% | |
| TGTTTAAGAGACAAGAGAGT+GGG | + | chr5.4:19438122-19438141 | MS.gene35271:CDS | 35.0% | |
| TTGGATTCTGTGAAGAGAAA+AGG | + | chr5.4:19437461-19437480 | MS.gene35271:CDS | 35.0% | |
| ! | AACATGAAGAAGAAGGGTAT+TGG | + | chr5.4:19436882-19436901 | MS.gene35271:CDS | 35.0% |
| ! | ATGATGAAGTGGGTATTGTT+GGG | + | chr5.4:19437171-19437190 | MS.gene35271:CDS | 35.0% |
| ! | GAGAAAAAGGGATGACTTTT+TGG | + | chr5.4:19436679-19436698 | MS.gene35271:CDS | 35.0% |
| ! | GAGATTTAAAGTTGCCAAGA+AGG | + | chr5.4:19437865-19437884 | MS.gene35271:CDS | 35.0% |
| ! | TTTAAGGGTAATGGTGAAGT+GGG | + | chr5.4:19436933-19436952 | MS.gene35271:CDS | 35.0% |
| ! | TTTAAGGGTGATGATGAAGT+GGG | + | chr5.4:19437161-19437180 | MS.gene35271:CDS | 35.0% |
| !! | AAGAAGGGTATTGGGAAAAT+GGG | + | chr5.4:19436891-19436910 | MS.gene35271:CDS | 35.0% |
| !! | ACATGAAGAAGAAGGGTATT+GGG | + | chr5.4:19436883-19436902 | MS.gene35271:CDS | 35.0% |
| !! | GATGAGATTTTGAAGGGTAA+TGG | + | chr5.4:19437110-19437129 | MS.gene35271:CDS | 35.0% |
| !! | TAACGTGATGATAAGTTGGT+TGG | + | chr5.4:19437775-19437794 | MS.gene35271:CDS | 35.0% |
| !! | TTTTAAGGGTAATGGTGAAG+TGG | + | chr5.4:19436932-19436951 | MS.gene35271:CDS | 35.0% |
| !! | TTTTAAGGGTGATGATGAAG+TGG | + | chr5.4:19437160-19437179 | MS.gene35271:CDS | 35.0% |
| !!! | CTGAAGCAGTTTTGATTGAT+GGG | + | chr5.4:19436985-19437004 | MS.gene35271:CDS | 35.0% |
| AAATCTGAAGGAAGTGAAGC+CGG | - | chr5.4:19438268-19438287 | None:intergenic | 40.0% | |
| AGAGGAATTAGAGGTTATGG+CGG | + | chr5.4:19437517-19437536 | MS.gene35271:CDS | 40.0% | |
| ATCCTAAGAAGGGTTCAGTT+TGG | + | chr5.4:19437963-19437982 | MS.gene35271:CDS | 40.0% | |
| ATTAGAGGTTATGGCAGTTG+CGG | + | chr5.4:19437610-19437629 | MS.gene35271:CDS | 40.0% | |
| CTTCATCAAGAGATGGTGAA+GGG | + | chr5.4:19437317-19437336 | MS.gene35271:CDS | 40.0% | |
| GAAAATGGAGAAGAAGCTTG+AGG | + | chr5.4:19437355-19437374 | MS.gene35271:CDS | 40.0% | |
| GAGAAAGCTTCATCAAGAGA+TGG | + | chr5.4:19437310-19437329 | MS.gene35271:CDS | 40.0% | |
| GATGGTGAAGGGAAAAGAAA+AGG | + | chr5.4:19437328-19437347 | MS.gene35271:CDS | 40.0% | |
| GATTTCCATAACAATGGGGA+TGG | + | chr5.4:19437797-19437816 | MS.gene35271:CDS | 40.0% | |
| GCAACTTTAAATCTCCCACA+AGG | - | chr5.4:19437860-19437879 | None:intergenic | 40.0% | |
| GCATATCTTGAGAAGGTTGA+TGG | + | chr5.4:19438088-19438107 | MS.gene35271:CDS | 40.0% | |
| GTGTTTAAGAGACAAGAGAG+TGG | + | chr5.4:19438121-19438140 | MS.gene35271:CDS | 40.0% | |
| TACTAGTGGAGAGGAATTAG+AGG | + | chr5.4:19437508-19437527 | MS.gene35271:CDS | 40.0% | |
| TCCTAAGAAGGGTTCAGTTT+GGG | + | chr5.4:19437964-19437983 | MS.gene35271:CDS | 40.0% | |
| TCTTTCCATCCCCATTGTTA+TGG | - | chr5.4:19437805-19437824 | None:intergenic | 40.0% | |
| TGGAGAGGAATTAGAGGTTA+TGG | + | chr5.4:19437514-19437533 | MS.gene35271:CDS | 40.0% | |
| TTGATAAAGATCGAGTGGAG+AGG | + | chr5.4:19437651-19437670 | MS.gene35271:CDS | 40.0% | |
| ! | ATTAGAAGGTATGGTGGTTG+CGG | + | chr5.4:19437436-19437455 | MS.gene35271:CDS | 40.0% |
| ! | GATGATGAAGTGGGTATTGT+TGG | + | chr5.4:19437170-19437189 | MS.gene35271:CDS | 40.0% |
| ! | GTGTATGATGGTGATGATGA+TGG | + | chr5.4:19437701-19437720 | MS.gene35271:CDS | 40.0% |
| ! | TTGAAGGGTAATGGTGAAGT+GGG | + | chr5.4:19437119-19437138 | MS.gene35271:CDS | 40.0% |
| ! | TTTGAAGGGTAATGGTGAAG+TGG | + | chr5.4:19437118-19437137 | MS.gene35271:CDS | 40.0% |
| !! | GAAGAAGGGTATTGGGAAAA+TGG | + | chr5.4:19436890-19436909 | MS.gene35271:CDS | 40.0% |
| !! | GGAGAGTTCTAAACCAAAGA+TGG | + | chr5.4:19437232-19437251 | MS.gene35271:CDS | 40.0% |
| !! | GTGAAGTGGGTTGTGAAAAA+GGG | + | chr5.4:19436946-19436965 | MS.gene35271:CDS | 40.0% |
| !! | TGAAGTGGGTTGTGAAAAAG+GGG | + | chr5.4:19436947-19436966 | MS.gene35271:CDS | 40.0% |
| !! | TGGGAAAATGGGTTGTGAAA+AGG | + | chr5.4:19436902-19436921 | MS.gene35271:CDS | 40.0% |
| !!! | AGTCATGCGGTTAGTTTTCT+TGG | + | chr5.4:19438145-19438164 | MS.gene35271:CDS | 40.0% |
| !!! | AGTTTTGATTGATGGGTCTG+AGG | + | chr5.4:19436992-19437011 | MS.gene35271:CDS | 40.0% |
| !!! | GCTGAAGCAGTTTTGATTGA+TGG | + | chr5.4:19436984-19437003 | MS.gene35271:CDS | 40.0% |
| !!! | GTCATGCGGTTAGTTTTCTT+GGG | + | chr5.4:19438146-19438165 | MS.gene35271:CDS | 40.0% |
| !!! | GTGGAGAGGAGTTTTAAGAA+AGG | + | chr5.4:19437665-19437684 | MS.gene35271:CDS | 40.0% |
| AATTCATGATCCTCGTCGCA+AGG | - | chr5.4:19438220-19438239 | None:intergenic | 45.0% | |
| ACTAGTGGAGGGGAATTAGA+AGG | + | chr5.4:19437422-19437441 | MS.gene35271:CDS | 45.0% | |
| ATTAGAGGTTATGGCGGTTG+CGG | + | chr5.4:19437523-19437542 | MS.gene35271:CDS | 45.0% | |
| ATTCATGATCCTCGTCGCAA+GGG | - | chr5.4:19438219-19438238 | None:intergenic | 45.0% | |
| CAAGTTTGGGCTGTGTATGA+TGG | + | chr5.4:19437689-19437708 | MS.gene35271:CDS | 45.0% | |
| CGGATCCTGTGAAGAGAAAA+GGG | + | chr5.4:19437549-19437568 | MS.gene35271:CDS | 45.0% | |
| GAAAAGGGTTGAGATCTGAG+AGG | + | chr5.4:19437477-19437496 | MS.gene35271:CDS | 45.0% | |
| GCTTCATCAAGAGATGGTGA+AGG | + | chr5.4:19437316-19437335 | MS.gene35271:CDS | 45.0% | |
| GGTGAAGGGAAAAGAAAAGG+AGG | + | chr5.4:19437331-19437350 | MS.gene35271:CDS | 45.0% | |
| TCACTCCCAACAACCATCTT+TGG | - | chr5.4:19437248-19437267 | None:intergenic | 45.0% | |
| TCGGATCCTGTGAAGAGAAA+AGG | + | chr5.4:19437548-19437567 | MS.gene35271:CDS | 45.0% | |
| TGAACCTATGGAAGCCTTCT+TGG | - | chr5.4:19437882-19437901 | None:intergenic | 45.0% | |
| TGCTAGTGGAGAGGAATTAG+AGG | + | chr5.4:19437595-19437614 | MS.gene35271:CDS | 45.0% | |
| TGGAGGGGAATTAGAAGGTA+TGG | + | chr5.4:19437427-19437446 | MS.gene35271:CDS | 45.0% | |
| TTTCTCATCAGATTCCTGCG+CGG | + | chr5.4:19438188-19438207 | MS.gene35271:CDS | 45.0% | |
| ! | AGGGGAATTAGAAGGTATGG+TGG | + | chr5.4:19437430-19437449 | MS.gene35271:CDS | 45.0% |
| ! | CTCAACCCTTTTCTCTTCAC+AGG | - | chr5.4:19437470-19437489 | None:intergenic | 45.0% |
| ! | GTTGAGATCTGAGAGGCATA+TGG | + | chr5.4:19437571-19437590 | MS.gene35271:CDS | 45.0% |
| ! | TGGGTATTGTTGGGAGATTG+AGG | + | chr5.4:19437180-19437199 | MS.gene35271:CDS | 45.0% |
| !! | GGTGAAGTGGGTTGTGAAAA+AGG | + | chr5.4:19436945-19436964 | MS.gene35271:CDS | 45.0% |
| !! | GGTGAAGTGGGTTGTGAAAA+TGG | + | chr5.4:19436945-19436964 | MS.gene35271:CDS | 45.0% |
| !!! | TGCGGTTAGTTTTCTTGGGA+AGG | + | chr5.4:19438150-19438169 | MS.gene35271:CDS | 45.0% |
| ACAAGAGAGTGGGAGTCATG+CGG | + | chr5.4:19438132-19438151 | MS.gene35271:CDS | 50.0% | |
| AGAAGCTTGAGGGTTCTGTG+AGG | + | chr5.4:19437366-19437385 | MS.gene35271:CDS | 50.0% | |
| AGACTGTTGGGAGCTTGATC+CGG | + | chr5.4:19438246-19438265 | MS.gene35271:CDS | 50.0% | |
| AGGGTTCTGTGAGGAGAAAG+GGG | + | chr5.4:19437375-19437394 | MS.gene35271:CDS | 50.0% | |
| AGGTATGGTGGTTGCGGATT+TGG | + | chr5.4:19437442-19437461 | MS.gene35271:CDS | 50.0% | |
| AGTTTGGGCGCTTTACAGTG+AGG | + | chr5.4:19437979-19437998 | MS.gene35271:CDS | 50.0% | |
| ATTGAGGAAGAGAACGCGGT+CGG | + | chr5.4:19437196-19437215 | MS.gene35271:CDS | 50.0% | |
| GAGGGTTCTGTGAGGAGAAA+GGG | + | chr5.4:19437374-19437393 | MS.gene35271:CDS | 50.0% | |
| GATGGTTGTTGGGAGTGAAG+AGG | + | chr5.4:19437250-19437269 | MS.gene35271:CDS | 50.0% | |
| GCATATGGATGCTAGTGGAG+AGG | + | chr5.4:19437586-19437605 | MS.gene35271:CDS | 50.0% | |
| GCATGTGGATACTAGTGGAG+AGG | + | chr5.4:19437499-19437518 | MS.gene35271:CDS | 50.0% | |
| GCCCAAACTGAACCCTTCTT+AGG | - | chr5.4:19437968-19437987 | None:intergenic | 50.0% | |
| GGAGATTGAGGAAGAGAACG+CGG | + | chr5.4:19437192-19437211 | MS.gene35271:CDS | 50.0% | |
| GGGAATAAGCTTGTGTGTCC+GGG | + | chr5.4:19436753-19436772 | MS.gene35271:CDS | 50.0% | |
| GGGGAATAAGCTTGTGTGTC+CGG | + | chr5.4:19436752-19436771 | MS.gene35271:CDS | 50.0% | |
| GGTTATGGCAGTTGCGGATT+CGG | + | chr5.4:19437616-19437635 | MS.gene35271:CDS | 50.0% | |
| GTTGCCAAGAAGGCTTCCAT+AGG | + | chr5.4:19437875-19437894 | MS.gene35271:CDS | 50.0% | |
| TGAGGGTTCTGTGAGGAGAA+AGG | + | chr5.4:19437373-19437392 | MS.gene35271:CDS | 50.0% | |
| ! | CTCATGTCGTCGATTGCGAT+CGG | + | chr5.4:19437915-19437934 | MS.gene35271:CDS | 50.0% |
| ! | GAGAGGCATATGGATGCTAG+TGG | + | chr5.4:19437581-19437600 | MS.gene35271:CDS | 50.0% |
| ! | GAGAGGCATGTGGATACTAG+TGG | + | chr5.4:19437494-19437513 | MS.gene35271:CDS | 50.0% |
| ! | GTTGAGATCTGAGAGGCATG+TGG | + | chr5.4:19437484-19437503 | MS.gene35271:CDS | 50.0% |
| ! | TCATGTCGTCGATTGCGATC+GGG | + | chr5.4:19437916-19437935 | MS.gene35271:CDS | 50.0% |
| !! | GTGATGATGATGGAATGCCG+AGG | + | chr5.4:19437711-19437730 | MS.gene35271:CDS | 50.0% |
| AGGCACAGGGATACTAGTGG+AGG | + | chr5.4:19437410-19437429 | MS.gene35271:CDS | 55.0% | |
| AGTGAGGCGAGTCTTGATGC+AGG | + | chr5.4:19437995-19438014 | MS.gene35271:CDS | 55.0% | |
| GAAAGGGGTCGAGACTTGAG+AGG | + | chr5.4:19437390-19437409 | MS.gene35271:CDS | 55.0% | |
| GCACAGGGATACTAGTGGAG+GGG | + | chr5.4:19437412-19437431 | MS.gene35271:CDS | 55.0% | |
| GCGAGTCTTGATGCAGGTGA+GGG | + | chr5.4:19438001-19438020 | MS.gene35271:CDS | 55.0% | |
| GGCACAGGGATACTAGTGGA+GGG | + | chr5.4:19437411-19437430 | MS.gene35271:CDS | 55.0% | |
| GGTTATGGCGGTTGCGGATT+CGG | + | chr5.4:19437529-19437548 | MS.gene35271:CDS | 55.0% | |
| ! | GAGAGGCACAGGGATACTAG+TGG | + | chr5.4:19437407-19437426 | MS.gene35271:CDS | 55.0% |
| ! | GTCGAGACTTGAGAGGCACA+GGG | + | chr5.4:19437397-19437416 | MS.gene35271:CDS | 55.0% |
| AGGAAGAGAACGCGGTCGGT+TGG | + | chr5.4:19437200-19437219 | MS.gene35271:CDS | 60.0% | |
| GAAGAGAACGCGGTCGGTTG+GGG | + | chr5.4:19437202-19437221 | MS.gene35271:CDS | 60.0% | |
| GCGGAAATTCCCTTGCGACG+AGG | + | chr5.4:19438207-19438226 | MS.gene35271:CDS | 60.0% | |
| GGAAGAGAACGCGGTCGGTT+GGG | + | chr5.4:19437201-19437220 | MS.gene35271:CDS | 60.0% | |
| GGCGAGTCTTGATGCAGGTG+AGG | + | chr5.4:19438000-19438019 | MS.gene35271:CDS | 60.0% | |
| TCGCAAGGGAATTTCCGCGC+AGG | - | chr5.4:19438205-19438224 | None:intergenic | 60.0% | |
| ! | GGTCGAGACTTGAGAGGCAC+AGG | + | chr5.4:19437396-19437415 | MS.gene35271:CDS | 60.0% |
| ! | GCGGTCGGTTGGGGAGGTTT+TGG | + | chr5.4:19437211-19437230 | MS.gene35271:CDS | 65.0% |
| GAGAACGCGGTCGGTTGGGG+AGG | + | chr5.4:19437205-19437224 | MS.gene35271:CDS | 70.0% | |
| TTGCGATCGGGCAGCGCGCG+AGG | + | chr5.4:19437928-19437947 | MS.gene35271:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 19436675 | 19438315 | 19436675 | ID=MS.gene35271 |
| chr5.4 | mRNA | 19436675 | 19438315 | 19436675 | ID=MS.gene35271.t1;Parent=MS.gene35271 |
| chr5.4 | exon | 19436675 | 19438315 | 19436675 | ID=MS.gene35271.t1.exon1;Parent=MS.gene35271.t1 |
| chr5.4 | CDS | 19436675 | 19438315 | 19436675 | ID=cds.MS.gene35271.t1;Parent=MS.gene35271.t1 |
| Gene Sequence |
| Protein sequence |
