Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36102.t1 | RHN40643.1 | 93.7 | 695 | 44 | 0 | 1 | 695 | 1 | 695 | 2.30E-292 | 1014.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36102.t1 | Q9SA32 | 52.4 | 424 | 168 | 3 | 315 | 738 | 6 | 395 | 5.0e-110 | 400.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36102.t1 | A0A396GJC6 | 93.7 | 695 | 44 | 0 | 1 | 695 | 1 | 695 | 1.7e-292 | 1014.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050297 | MS.gene36102 | 0.807646 | 4.57E-50 | -1.69E-46 |
MS.gene052143 | MS.gene36102 | 0.80968 | 1.68E-50 | -1.69E-46 |
MS.gene052308 | MS.gene36102 | 0.807304 | 5.40E-50 | -1.69E-46 |
MS.gene052367 | MS.gene36102 | 0.814007 | 1.92E-51 | -1.69E-46 |
MS.gene056041 | MS.gene36102 | 0.818528 | 1.87E-52 | -1.69E-46 |
MS.gene058853 | MS.gene36102 | 0.813778 | 2.15E-51 | -1.69E-46 |
MS.gene059553 | MS.gene36102 | 0.80649 | 8.02E-50 | -1.69E-46 |
MS.gene060473 | MS.gene36102 | 0.801273 | 9.73E-49 | -1.69E-46 |
MS.gene060565 | MS.gene36102 | 0.802221 | 6.22E-49 | -1.69E-46 |
MS.gene061099 | MS.gene36102 | 0.825723 | 4.01E-54 | -1.69E-46 |
MS.gene061260 | MS.gene36102 | 0.820998 | 5.10E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene045765 | MS.gene36102 | PPI |
MS.gene76034 | MS.gene36102 | PPI |
MS.gene35086 | MS.gene36102 | PPI |
MS.gene55980 | MS.gene36102 | PPI |
MS.gene36102 | MS.gene67725 | PPI |
MS.gene36102 | MS.gene066551 | PPI |
MS.gene066552 | MS.gene36102 | PPI |
MS.gene36102 | MS.gene028366 | PPI |
MS.gene67743 | MS.gene36102 | PPI |
MS.gene36102 | MS.gene00146 | PPI |
MS.gene78156 | MS.gene36102 | PPI |
MS.gene28739 | MS.gene36102 | PPI |
MS.gene36102 | MS.gene55900 | PPI |
MS.gene36102 | MS.gene071261 | PPI |
MS.gene36424 | MS.gene36102 | PPI |
MS.gene009372 | MS.gene36102 | PPI |
MS.gene51515 | MS.gene36102 | PPI |
MS.gene36102 | MS.gene058245 | PPI |
MS.gene67884 | MS.gene36102 | PPI |
MS.gene074258 | MS.gene36102 | PPI |
MS.gene36102 | MS.gene00063 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36102.t1 | MTR_5g088980 | 43.796 | 274 | 149 | 4 | 468 | 737 | 145 | 417 | 1.22e-75 | 251 |
MS.gene36102.t1 | MTR_5g023790 | 46.014 | 276 | 143 | 2 | 464 | 733 | 144 | 419 | 2.24e-75 | 250 |
MS.gene36102.t1 | MTR_8g074000 | 45.211 | 261 | 140 | 1 | 476 | 733 | 163 | 423 | 4.81e-70 | 236 |
MS.gene36102.t1 | MTR_7g089080 | 44.444 | 270 | 139 | 3 | 476 | 737 | 189 | 455 | 5.74e-68 | 244 |
MS.gene36102.t1 | MTR_5g023790 | 47.679 | 237 | 118 | 2 | 464 | 694 | 144 | 380 | 9.50e-65 | 220 |
MS.gene36102.t1 | MTR_1g011470 | 38.824 | 255 | 149 | 3 | 486 | 733 | 161 | 415 | 1.31e-51 | 186 |
MS.gene36102.t1 | MTR_3g107970 | 38.521 | 257 | 151 | 3 | 484 | 733 | 211 | 467 | 1.04e-50 | 184 |
MS.gene36102.t1 | MTR_5g023790 | 47.778 | 180 | 86 | 1 | 476 | 647 | 162 | 341 | 2.92e-47 | 171 |
MS.gene36102.t1 | MTR_2g102520 | 40.909 | 220 | 123 | 3 | 483 | 695 | 212 | 431 | 2.11e-46 | 172 |
MS.gene36102.t1 | MTR_3g088415 | 35.484 | 248 | 151 | 4 | 490 | 729 | 244 | 490 | 3.84e-45 | 169 |
MS.gene36102.t1 | MTR_2g102550 | 34.444 | 270 | 169 | 4 | 470 | 731 | 150 | 419 | 1.22e-44 | 166 |
MS.gene36102.t1 | MTR_3g088405 | 35.317 | 252 | 148 | 6 | 490 | 729 | 247 | 495 | 3.32e-44 | 167 |
MS.gene36102.t1 | MTR_3g102510 | 33.333 | 252 | 159 | 4 | 486 | 729 | 74 | 324 | 1.75e-40 | 152 |
MS.gene36102.t1 | MTR_3g088415 | 38.947 | 190 | 110 | 2 | 490 | 673 | 244 | 433 | 3.97e-40 | 154 |
MS.gene36102.t1 | MTR_3g102520 | 32.946 | 258 | 160 | 5 | 483 | 729 | 88 | 343 | 1.99e-39 | 150 |
MS.gene36102.t1 | MTR_1g018680 | 32.411 | 253 | 162 | 4 | 486 | 729 | 91 | 343 | 1.01e-38 | 147 |
MS.gene36102.t1 | MTR_3g060400 | 37.398 | 246 | 141 | 7 | 484 | 721 | 26 | 266 | 8.80e-38 | 142 |
MS.gene36102.t1 | MTR_3g460990 | 37.398 | 246 | 141 | 7 | 484 | 721 | 26 | 266 | 8.80e-38 | 142 |
MS.gene36102.t1 | MTR_3g102530 | 30.597 | 268 | 159 | 4 | 487 | 729 | 71 | 336 | 1.44e-37 | 144 |
MS.gene36102.t1 | MTR_3g061680 | 34.921 | 252 | 151 | 6 | 478 | 721 | 14 | 260 | 6.13e-36 | 137 |
MS.gene36102.t1 | MTR_3g060820 | 34.959 | 246 | 147 | 6 | 484 | 721 | 20 | 260 | 1.19e-35 | 136 |
MS.gene36102.t1 | MTR_3g060770 | 35.931 | 231 | 137 | 4 | 479 | 702 | 25 | 251 | 2.87e-35 | 135 |
MS.gene36102.t1 | MTR_3g102540 | 33.740 | 246 | 154 | 5 | 498 | 738 | 23 | 264 | 3.43e-35 | 135 |
MS.gene36102.t1 | MTR_3g060410 | 38.679 | 212 | 121 | 6 | 518 | 721 | 135 | 345 | 1.02e-34 | 136 |
MS.gene36102.t1 | MTR_3g102560 | 30.662 | 287 | 186 | 3 | 454 | 738 | 45 | 320 | 1.54e-34 | 134 |
MS.gene36102.t1 | MTR_3g088415 | 41.259 | 143 | 83 | 1 | 490 | 631 | 244 | 386 | 1.73e-32 | 130 |
MS.gene36102.t1 | MTR_6g045270 | 33.202 | 253 | 152 | 7 | 485 | 731 | 45 | 286 | 1.39e-27 | 114 |
MS.gene36102.t1 | MTR_5g011900 | 27.094 | 203 | 141 | 3 | 453 | 651 | 40 | 239 | 1.33e-16 | 80.5 |
MS.gene36102.t1 | MTR_1g032850 | 29.730 | 185 | 126 | 4 | 519 | 700 | 372 | 555 | 1.54e-16 | 84.0 |
MS.gene36102.t1 | MTR_5g044040 | 38.667 | 75 | 46 | 0 | 540 | 614 | 7 | 81 | 2.20e-13 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene36102.t1 | AT1G16330 | 49.701 | 501 | 205 | 6 | 244 | 738 | 188 | 647 | 1.31e-154 | 464 |
MS.gene36102.t1 | AT5G06150 | 46.899 | 258 | 136 | 1 | 476 | 733 | 172 | 428 | 4.71e-80 | 263 |
MS.gene36102.t1 | AT3G11520 | 42.434 | 304 | 163 | 4 | 432 | 733 | 112 | 405 | 2.13e-75 | 249 |
MS.gene36102.t1 | AT1G20610 | 43.493 | 292 | 159 | 3 | 448 | 733 | 133 | 424 | 1.01e-73 | 246 |
MS.gene36102.t1 | AT1G76310 | 46.718 | 259 | 137 | 1 | 476 | 733 | 167 | 425 | 6.94e-72 | 241 |
MS.gene36102.t1 | AT2G26760 | 37.764 | 331 | 182 | 7 | 410 | 735 | 69 | 380 | 1.34e-67 | 228 |
MS.gene36102.t1 | AT1G76310 | 42.160 | 287 | 137 | 2 | 476 | 733 | 167 | 453 | 1.09e-65 | 225 |
MS.gene36102.t1 | AT1G76310 | 50.698 | 215 | 105 | 1 | 476 | 689 | 167 | 381 | 8.19e-64 | 218 |
MS.gene36102.t1 | AT3G11520 | 43.019 | 265 | 139 | 4 | 432 | 694 | 112 | 366 | 1.48e-63 | 217 |
MS.gene36102.t1 | AT4G37490 | 40.071 | 282 | 152 | 6 | 464 | 733 | 141 | 417 | 1.76e-62 | 216 |
MS.gene36102.t1 | AT2G17620 | 43.542 | 271 | 151 | 1 | 461 | 729 | 144 | 414 | 2.66e-59 | 207 |
MS.gene36102.t1 | AT4G35620 | 44.882 | 254 | 140 | 0 | 476 | 729 | 162 | 415 | 1.07e-58 | 205 |
MS.gene36102.t1 | AT5G11300 | 40.458 | 262 | 145 | 4 | 475 | 729 | 165 | 422 | 4.65e-54 | 192 |
MS.gene36102.t1 | AT4G35620 | 47.032 | 219 | 116 | 0 | 476 | 694 | 162 | 380 | 8.33e-51 | 182 |
MS.gene36102.t1 | AT5G43080 | 35.798 | 257 | 159 | 3 | 486 | 738 | 87 | 341 | 1.76e-49 | 177 |
MS.gene36102.t1 | AT5G25380 | 36.782 | 261 | 158 | 3 | 484 | 737 | 171 | 431 | 3.46e-49 | 179 |
MS.gene36102.t1 | AT5G25380 | 36.782 | 261 | 158 | 3 | 484 | 737 | 171 | 431 | 3.46e-49 | 179 |
MS.gene36102.t1 | AT5G25380 | 36.782 | 261 | 158 | 3 | 484 | 737 | 177 | 437 | 5.09e-49 | 179 |
MS.gene36102.t1 | AT5G25380 | 37.349 | 249 | 149 | 3 | 484 | 725 | 171 | 419 | 6.00e-48 | 175 |
MS.gene36102.t1 | AT5G43080 | 35.878 | 262 | 157 | 5 | 486 | 738 | 87 | 346 | 8.23e-48 | 173 |
MS.gene36102.t1 | AT1G20590 | 49.412 | 170 | 86 | 0 | 544 | 713 | 63 | 232 | 8.88e-48 | 170 |
MS.gene36102.t1 | AT1G47220 | 36.742 | 264 | 154 | 5 | 486 | 738 | 56 | 317 | 5.35e-47 | 170 |
MS.gene36102.t1 | AT1G15570 | 34.559 | 272 | 168 | 4 | 476 | 737 | 178 | 449 | 1.14e-46 | 172 |
MS.gene36102.t1 | AT1G44110 | 37.652 | 247 | 147 | 3 | 490 | 729 | 198 | 444 | 1.80e-46 | 172 |
MS.gene36102.t1 | AT1G76310 | 49.143 | 175 | 86 | 2 | 476 | 649 | 167 | 339 | 2.83e-46 | 168 |
MS.gene36102.t1 | AT5G06150 | 46.429 | 168 | 87 | 2 | 476 | 643 | 172 | 336 | 5.81e-46 | 167 |
MS.gene36102.t1 | AT5G11300 | 43.662 | 213 | 109 | 4 | 475 | 680 | 165 | 373 | 6.82e-46 | 169 |
MS.gene36102.t1 | AT1G80370 | 38.326 | 227 | 133 | 3 | 476 | 695 | 187 | 413 | 3.26e-45 | 169 |
MS.gene36102.t1 | AT1G47210 | 34.848 | 264 | 159 | 5 | 486 | 738 | 102 | 363 | 2.52e-44 | 164 |
MS.gene36102.t1 | AT1G47230 | 31.270 | 307 | 189 | 5 | 441 | 738 | 63 | 356 | 1.01e-43 | 162 |
MS.gene36102.t1 | AT1G47230 | 31.169 | 308 | 189 | 6 | 441 | 738 | 63 | 357 | 4.23e-42 | 157 |
MS.gene36102.t1 | AT1G77390 | 34.940 | 249 | 151 | 4 | 490 | 729 | 182 | 428 | 1.04e-40 | 155 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 259 | 401 | 3.96e-27 | 116 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 259 | 401 | 3.96e-27 | 116 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 3.97e-27 | 116 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 248 | 390 | 4.99e-27 | 115 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 5.06e-27 | 115 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 5.06e-27 | 115 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 5.06e-27 | 115 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 5.06e-27 | 115 |
MS.gene36102.t1 | AT1G34460 | 37.195 | 164 | 82 | 2 | 476 | 639 | 262 | 404 | 7.29e-27 | 115 |
MS.gene36102.t1 | AT1G14750 | 28.947 | 190 | 132 | 2 | 512 | 698 | 380 | 569 | 6.85e-17 | 85.1 |
MS.gene36102.t1 | AT1G47210 | 42.857 | 91 | 49 | 2 | 486 | 573 | 102 | 192 | 8.78e-17 | 79.7 |
MS.gene36102.t1 | AT1G14750 | 28.497 | 193 | 135 | 2 | 512 | 701 | 380 | 572 | 9.12e-17 | 85.1 |
MS.gene36102.t1 | AT1G14750 | 28.947 | 190 | 132 | 2 | 512 | 698 | 212 | 401 | 1.20e-15 | 80.5 |
MS.gene36102.t1 | AT1G14750 | 28.947 | 190 | 131 | 3 | 512 | 698 | 212 | 400 | 7.11e-15 | 77.8 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AGAAGGTTCTTACTTAATTT+TGG | 0.126058 | 8.3:+52651066 | None:intergenic |
CTCTGCCAGTTACAGGTTTA+AGG | 0.127014 | 8.3:-52649246 | MS.gene36102:CDS |
AATTAGTAGGCACAGGTTTA+AGG | 0.156384 | 8.3:-52649601 | MS.gene36102:intron |
ATCTTATACAACTTCATTAA+TGG | 0.209874 | 8.3:-52646893 | MS.gene36102:CDS |
ATGCTATATATCAGTACTAT+TGG | 0.246809 | 8.3:-52646690 | MS.gene36102:CDS |
AGGAAGTCTCTGCCAGTTAC+AGG | 0.257709 | 8.3:-52649253 | MS.gene36102:CDS |
AACCCCACCGAGCTCCTTTC+TGG | 0.273368 | 8.3:+52644306 | None:intergenic |
CACTCTTAACTTTCCCTTCC+CGG | 0.274097 | 8.3:+52644345 | None:intergenic |
TTGCAGATTCTCAAGGAAAA+TGG | 0.281849 | 8.3:-52646787 | MS.gene36102:intron |
CCTCAAAGTATGAGGACTTT+TGG | 0.284590 | 8.3:-52645546 | MS.gene36102:CDS |
AACTAGTACAATTGCCTCTA+AGG | 0.304795 | 8.3:-52647166 | MS.gene36102:CDS |
AACAAAACATGTGGAGCTTC+TGG | 0.315400 | 8.3:-52651261 | MS.gene36102:intron |
TCAAGGAAAATGGTGAAGTT+AGG | 0.319988 | 8.3:-52646777 | MS.gene36102:CDS |
AACTTGAAACCGGTCAATTT+CGG | 0.323503 | 8.3:+52652297 | None:intergenic |
TGATTTGTTCTGGCCTGATA+TGG | 0.332477 | 8.3:+52647194 | None:intergenic |
CAGTTCCAAGGAGGGTAAAC+AGG | 0.338773 | 8.3:-52648893 | MS.gene36102:CDS |
TTCCCTTCCCGGCAGCTTTG+TGG | 0.339747 | 8.3:+52644356 | None:intergenic |
CTAAAATCTAAATCCATATC+AGG | 0.341068 | 8.3:-52647207 | MS.gene36102:CDS |
TGCTCCTTGCATTAATTAGT+TGG | 0.354273 | 8.3:+52648498 | None:intergenic |
CTTTGGATTAGCGGCAGTAT+TGG | 0.366466 | 8.3:+52651451 | None:intergenic |
TGCTATATATCAGTACTATT+GGG | 0.372911 | 8.3:-52646689 | MS.gene36102:CDS |
TCACAAAACCTTGTAGTTGT+AGG | 0.374254 | 8.3:+52649367 | None:intergenic |
TTAATGCAAGGAGCAATCTA+TGG | 0.378840 | 8.3:-52648490 | MS.gene36102:CDS |
ATTAGTAGGCACAGGTTTAA+GGG | 0.382551 | 8.3:-52649600 | MS.gene36102:intron |
ATGTCTTTGACTTGCATCAT+TGG | 0.383091 | 8.3:+52647092 | None:intergenic |
TCTGCCAGTTACAGGTTTAA+GGG | 0.386828 | 8.3:-52649245 | MS.gene36102:CDS |
CTTGTAATTGTGGGTAACAT+AGG | 0.388170 | 8.3:+52649021 | None:intergenic |
CTGTTTACCCTCCTTGGAAC+TGG | 0.389619 | 8.3:+52648894 | None:intergenic |
TACCTATCCTTTGTGCCAAC+TGG | 0.389906 | 8.3:+52649533 | None:intergenic |
GAAGCCCTTAAACCTGTAAC+TGG | 0.401913 | 8.3:+52649241 | None:intergenic |
ACAGGTTTAAGGGCTTCTTT+AGG | 0.403015 | 8.3:-52649235 | MS.gene36102:CDS |
CCAGTACAAGTCAAATCAAC+GGG | 0.403924 | 8.3:+52644255 | None:intergenic |
TCTACCCTGTTTACCCTCCT+TGG | 0.405631 | 8.3:+52648888 | None:intergenic |
GCCTCTGAATCGCGTCCAAC+TGG | 0.413116 | 8.3:-52652460 | MS.gene36102:intron |
TGCGGGGAGTATTGGTCAAC+TGG | 0.421771 | 8.3:-52645895 | MS.gene36102:CDS |
GCTCCTTGCATTAATTAGTT+GGG | 0.422245 | 8.3:+52648499 | None:intergenic |
TTAGAGGCAATTGTACTAGT+TGG | 0.428782 | 8.3:+52647168 | None:intergenic |
GGCTCGAGTTGAGCCCAATC+TGG | 0.429781 | 8.3:+52652480 | None:intergenic |
ATGTTTCTTCCAGCACTTCA+AGG | 0.433166 | 8.3:-52649273 | MS.gene36102:intron |
TCCTCATATGCGGGGAGTAT+TGG | 0.436208 | 8.3:-52645903 | MS.gene36102:CDS |
AAACAGTGGGCATCCCTTTG+AGG | 0.437482 | 8.3:-52650795 | MS.gene36102:CDS |
AACCCCTTTGTTAGCTGCTA+TGG | 0.437995 | 8.3:+52651478 | None:intergenic |
TTGATTGTGGTCTTAACAAC+AGG | 0.438316 | 8.3:+52647252 | None:intergenic |
CTGAAATTCCACAAAGCTGC+CGG | 0.439491 | 8.3:-52644364 | MS.gene36102:CDS |
CCAAAAGTCCTCATACTTTG+AGG | 0.440603 | 8.3:+52645546 | None:intergenic |
TTCGCAAACCTTGTAATTGT+GGG | 0.442913 | 8.3:+52649012 | None:intergenic |
CTTGTAGTTGTAGGTAACAT+AGG | 0.444522 | 8.3:+52649376 | None:intergenic |
AGGACTTCTGCAAGAGAAGT+TGG | 0.449064 | 8.3:-52652183 | MS.gene36102:CDS |
GGGAAATAAGTCACCTCCAT+TGG | 0.449283 | 8.3:+52649682 | None:intergenic |
CTGACTTTCTTGAGGAGACT+TGG | 0.449935 | 8.3:+52647637 | None:intergenic |
CGGAAGAATAGTTCATCAAA+TGG | 0.450007 | 8.3:-52649563 | MS.gene36102:CDS |
ATTCGCAAACCTTGTAATTG+TGG | 0.452704 | 8.3:+52649011 | None:intergenic |
TGTCTGTTCCAAGCACTTCA+AGG | 0.453793 | 8.3:-52648926 | MS.gene36102:intron |
CCCTTTGAGGAAATCCTTCA+CGG | 0.456403 | 8.3:-52650782 | MS.gene36102:intron |
CAAGGAAAATGGTGAAGTTA+GGG | 0.456754 | 8.3:-52646776 | MS.gene36102:CDS |
TGCCTTACCAGGGTTTCAGC+AGG | 0.457395 | 8.3:-52650829 | MS.gene36102:intron |
TGAAGTAGTGGTGTCCATGA+TGG | 0.459792 | 8.3:+52644517 | None:intergenic |
AAATGGTGAAGTTAGGGAGC+AGG | 0.462821 | 8.3:-52646770 | MS.gene36102:CDS |
GTTTCAGGTAAAATCCAGAT+TGG | 0.463789 | 8.3:-52652494 | MS.gene36102:intron |
CTATGTTACCCACAATTACA+AGG | 0.468217 | 8.3:-52649020 | MS.gene36102:intron |
ATATCTGACAGTGACATTGT+TGG | 0.470336 | 8.3:-52645641 | MS.gene36102:CDS |
GAAGTAGTGGTGTCCATGAT+GGG | 0.471578 | 8.3:+52644518 | None:intergenic |
TGTATAAGATTTCCGACGGC+TGG | 0.471671 | 8.3:+52646906 | None:intergenic |
GAGAAGTTGGCGCAGCTTCA+AGG | 0.471958 | 8.3:-52652170 | MS.gene36102:intron |
GATCAGAAGAATAATTCAAA+TGG | 0.472744 | 8.3:-52649211 | MS.gene36102:CDS |
GTTATGAAGTTTCACAGATC+AGG | 0.476147 | 8.3:-52644483 | MS.gene36102:intron |
ACAGGTTTAAGGGTTTCCTT+AGG | 0.478290 | 8.3:-52649590 | MS.gene36102:intron |
ACCCATCACCAACTTGAAAC+CGG | 0.480731 | 8.3:+52652287 | None:intergenic |
TGGAAGACCACTTTGGCCAC+TGG | 0.483759 | 8.3:+52648645 | None:intergenic |
GTGCCATAGCAGCTAACAAA+GGG | 0.485499 | 8.3:-52651481 | MS.gene36102:CDS |
GACCGGTTTCAAGTTGGTGA+TGG | 0.486190 | 8.3:-52652289 | MS.gene36102:CDS |
ACCGGTTTCAAGTTGGTGAT+GGG | 0.488226 | 8.3:-52652288 | MS.gene36102:CDS |
TATACAAGAGATCAAATGCT+TGG | 0.491502 | 8.3:-52645389 | MS.gene36102:CDS |
CATACTTTGAGGCCAACAAA+AGG | 0.492005 | 8.3:+52645557 | None:intergenic |
AGGAAATATGAAAGCGAGAA+AGG | 0.495289 | 8.3:-52651149 | MS.gene36102:CDS |
TTTCAGGTAAAATCCAGATT+GGG | 0.496626 | 8.3:-52652493 | MS.gene36102:intron |
TGTTGTTAAGACCACAATCA+AGG | 0.496768 | 8.3:-52647250 | MS.gene36102:CDS |
TTACATTCATCGTCTATACT+TGG | 0.497518 | 8.3:+52646739 | None:intergenic |
CACTGTCAGATATAGTGTCT+CGG | 0.498442 | 8.3:+52645651 | None:intergenic |
TTTGTTGGCCTCAAAGTATG+AGG | 0.498991 | 8.3:-52645554 | MS.gene36102:CDS |
GGCTGCACAATCAGATATGA+AGG | 0.502649 | 8.3:-52644805 | MS.gene36102:intron |
GTATATTACCTTTGGATTAG+CGG | 0.512604 | 8.3:+52651442 | None:intergenic |
ATGACAACTGAATTATTCTC+AGG | 0.516778 | 8.3:+52647018 | None:intergenic |
TGGGGAGAGCAGTTTGAAAA+CGG | 0.518960 | 8.3:-52646959 | MS.gene36102:CDS |
ACTGTCAGATATAGTGTCTC+GGG | 0.522142 | 8.3:+52645652 | None:intergenic |
CCTTAATTTGCAGATTCTCA+AGG | 0.524626 | 8.3:-52646794 | MS.gene36102:intron |
CTATGTTACCTACAACTACA+AGG | 0.525004 | 8.3:-52649375 | MS.gene36102:intron |
TCTCAAGTACCTATCCTTTG+TGG | 0.526837 | 8.3:+52649174 | None:intergenic |
TATGAAAGCGAGAAAGGCAT+TGG | 0.528115 | 8.3:-52651143 | MS.gene36102:CDS |
TTCCACAAAGCTGCCGGGAA+GGG | 0.530111 | 8.3:-52644358 | MS.gene36102:CDS |
ACCAATACTCCCCGCATATG+AGG | 0.531007 | 8.3:+52645902 | None:intergenic |
ATCCTCAATGGTTACTCTCA+AGG | 0.534260 | 8.3:-52652633 | None:intergenic |
AGAGATTACTCCTCATATGC+GGG | 0.536325 | 8.3:-52645912 | MS.gene36102:CDS |
TACAATTGCCTCTAAGGATG+AGG | 0.537132 | 8.3:-52647160 | MS.gene36102:CDS |
ATTCCACAAAGCTGCCGGGA+AGG | 0.538701 | 8.3:-52644359 | MS.gene36102:CDS |
ATTCCAGAAAGGAGCTCGGT+GGG | 0.541278 | 8.3:-52644309 | MS.gene36102:CDS |
TCTTACTTGGAAGACCACTT+TGG | 0.541955 | 8.3:+52648638 | None:intergenic |
TAAGGGTTTCCTTAGGTGAT+CGG | 0.541985 | 8.3:-52649583 | MS.gene36102:CDS |
TGTAGAGCTTCCTTGAGCAT+TGG | 0.542467 | 8.3:+52651111 | None:intergenic |
CAATTAGATGCTTCCAATGG+AGG | 0.543103 | 8.3:-52649695 | MS.gene36102:intron |
CCGTGAAGGATTTCCTCAAA+GGG | 0.543716 | 8.3:+52650782 | None:intergenic |
TACCTTGACTGACTTTCTTG+AGG | 0.544981 | 8.3:+52647629 | None:intergenic |
ACGAGTGAGATGCAGTTAGT+TGG | 0.548556 | 8.3:-52645589 | MS.gene36102:CDS |
TGAAATTCCACAAAGCTGCC+GGG | 0.552909 | 8.3:-52644363 | MS.gene36102:CDS |
AAAGACATCAACCATCTGAT+GGG | 0.554208 | 8.3:-52647077 | MS.gene36102:CDS |
ACCGTGAAGGATTTCCTCAA+AGG | 0.554678 | 8.3:+52650781 | None:intergenic |
CAAAGACATCGACCATCTGA+TGG | 0.555227 | 8.3:-52646979 | MS.gene36102:CDS |
ATACTTTGAGGCCAACAAAA+GGG | 0.555362 | 8.3:+52645558 | None:intergenic |
CACTGCAAATAACCCCATCA+TGG | 0.557574 | 8.3:-52644531 | MS.gene36102:CDS |
ATTCATCGTCTATACTTGGT+AGG | 0.558688 | 8.3:+52646743 | None:intergenic |
ACTATTCTTCCGATCACCTA+AGG | 0.561914 | 8.3:+52649574 | None:intergenic |
AAAGACATCGACCATCTGAT+GGG | 0.563380 | 8.3:-52646978 | MS.gene36102:CDS |
ATTGGTCAACTGGCTAATTG+AGG | 0.566050 | 8.3:-52645885 | MS.gene36102:intron |
ATACTGCACTCCCCATCAGA+TGG | 0.569624 | 8.3:+52647066 | None:intergenic |
GTTCAATTAGATGCTTCCAA+TGG | 0.571665 | 8.3:-52649698 | MS.gene36102:CDS |
CAAAGACATCAACCATCTGA+TGG | 0.574777 | 8.3:-52647078 | MS.gene36102:CDS |
AAGAGATCAAATGCTTGGAA+TGG | 0.575226 | 8.3:-52645384 | MS.gene36102:intron |
GAAATTGACCGGTTTCAAGT+TGG | 0.575439 | 8.3:-52652295 | MS.gene36102:CDS |
GTTCCCAACTAATTAATGCA+AGG | 0.576421 | 8.3:-52648502 | MS.gene36102:CDS |
ACCAGTTGGACGCGATTCAG+AGG | 0.576483 | 8.3:+52652459 | None:intergenic |
AATCAGTTGCCACAAAGGAT+AGG | 0.580793 | 8.3:-52649183 | MS.gene36102:intron |
CAATACTGCCGCTAATCCAA+AGG | 0.583084 | 8.3:-52651450 | MS.gene36102:intron |
AAACTGCTCTCCCCATCAGA+TGG | 0.584983 | 8.3:+52646967 | None:intergenic |
GGAAGTCTCTGCCAGTTCCA+AGG | 0.587112 | 8.3:-52648905 | MS.gene36102:CDS |
TACTTCCAATCGCAGGCACA+TGG | 0.589068 | 8.3:-52645968 | MS.gene36102:intron |
GAAGGGTGATTTCAAAAGCA+TGG | 0.592171 | 8.3:-52651292 | MS.gene36102:intron |
CAGAAGAATAATTCAAATGG+AGG | 0.592330 | 8.3:-52649208 | MS.gene36102:CDS |
CTTCATATTCAACTAAGCAT+AGG | 0.594043 | 8.3:+52644611 | None:intergenic |
GTCTCTGCCAGTTCCAAGGA+GGG | 0.594149 | 8.3:-52648901 | MS.gene36102:CDS |
TCTTTCTGATAACAGTTCAG+TGG | 0.602262 | 8.3:-52647121 | MS.gene36102:CDS |
GAGAAAAGTAACAAAACATG+TGG | 0.602918 | 8.3:-52651270 | MS.gene36102:CDS |
AGGTTCAACCACTAAAACAG+TGG | 0.606699 | 8.3:-52650809 | MS.gene36102:CDS |
GCTGATGTTACCAATGCTCA+AGG | 0.609500 | 8.3:-52651121 | MS.gene36102:CDS |
GCTGATGCGCATAGTAGTGA+AGG | 0.610271 | 8.3:+52644574 | None:intergenic |
CTCCTCAAGAAAGTCAGTCA+AGG | 0.612330 | 8.3:-52647631 | MS.gene36102:intron |
AACCAGTTGGCACAAAGGAT+AGG | 0.612355 | 8.3:-52649535 | MS.gene36102:intron |
TTATATGAAGCAGTGGGTGG+TGG | 0.612502 | 8.3:-52652340 | MS.gene36102:intron |
TGGAAGACTCGAGTTAGTGA+TGG | 0.613219 | 8.3:-52648470 | MS.gene36102:CDS |
AGGTCAATCAGTTGCCACAA+AGG | 0.614915 | 8.3:-52649188 | MS.gene36102:CDS |
TCAAATGGAGGTCAACCAGT+TGG | 0.620772 | 8.3:-52649548 | MS.gene36102:CDS |
CAGAGATTACTCCTCATATG+CGG | 0.620861 | 8.3:-52645913 | MS.gene36102:CDS |
AAGTTGTATAAGATTTCCGA+CGG | 0.622303 | 8.3:+52646902 | None:intergenic |
AGTTCCAAGGAGGGTAAACA+GGG | 0.627018 | 8.3:-52648892 | MS.gene36102:CDS |
AGGTCAACCAGTTGGCACAA+AGG | 0.627713 | 8.3:-52649540 | MS.gene36102:CDS |
GAAACAGCCAGTGGCCAAAG+TGG | 0.629869 | 8.3:-52648652 | MS.gene36102:CDS |
GGTTGCAGCAGTGAAACCGT+TGG | 0.635674 | 8.3:-52644287 | MS.gene36102:CDS |
AAGGAGTGGGAGCATTAAGA+CGG | 0.642469 | 8.3:+52644853 | None:intergenic |
AAATATTCCAGAAAGGAGCT+CGG | 0.647083 | 8.3:-52644313 | MS.gene36102:CDS |
AAGAATAGTTCATCAAATGG+AGG | 0.648198 | 8.3:-52649560 | MS.gene36102:CDS |
GGTTCAACCACTAAAACAGT+GGG | 0.650460 | 8.3:-52650808 | MS.gene36102:CDS |
AGATGTAGAAGCCTTGATTG+TGG | 0.654920 | 8.3:+52647239 | None:intergenic |
TATTCCAGAAAGGAGCTCGG+TGG | 0.657683 | 8.3:-52644310 | MS.gene36102:CDS |
TGTGACTTTCCATACCGTGA+AGG | 0.662185 | 8.3:+52650768 | None:intergenic |
TTCCAGAAAGGAGCTCGGTG+GGG | 0.665780 | 8.3:-52644308 | MS.gene36102:CDS |
AAGTAGTGGTGTCCATGATG+GGG | 0.666437 | 8.3:+52644519 | None:intergenic |
AAGACATCAACCATCTGATG+GGG | 0.669550 | 8.3:-52647076 | MS.gene36102:CDS |
CGGGAAGGGAAAGTTAAGAG+TGG | 0.674640 | 8.3:-52644344 | MS.gene36102:CDS |
TCAGTACTATTGGGTTACTG+AGG | 0.675513 | 8.3:-52646680 | MS.gene36102:intron |
AGTCTCTGCCAGTTCCAAGG+AGG | 0.676674 | 8.3:-52648902 | MS.gene36102:CDS |
CAACGGGGAAGTCTATCCAA+CGG | 0.683350 | 8.3:+52644271 | None:intergenic |
AAGACATCGACCATCTGATG+GGG | 0.684383 | 8.3:-52646977 | MS.gene36102:CDS |
GAGATTACTCCTCATATGCG+GGG | 0.688505 | 8.3:-52645911 | MS.gene36102:CDS |
AGTGCCATAGCAGCTAACAA+AGG | 0.688688 | 8.3:-52651482 | MS.gene36102:CDS |
GGTAGAGATGAATAACACAA+AGG | 0.692382 | 8.3:-52648871 | MS.gene36102:intron |
GGAAGTTCTGAAACAGCCAG+TGG | 0.695203 | 8.3:-52648661 | MS.gene36102:CDS |
TCAAGGCTTCTACATCTCAG+AGG | 0.717453 | 8.3:-52647233 | MS.gene36102:CDS |
TGCCATAGCAGCTAACAAAG+GGG | 0.737862 | 8.3:-52651480 | MS.gene36102:CDS |
CAGTACAAGTCAAATCAACG+GGG | 0.772830 | 8.3:+52644256 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 52644270 | 52652648 | 52644270 | ID=MS.gene36102 |
chr8.3 | mRNA | 52644270 | 52652648 | 52644270 | ID=MS.gene36102.t1;Parent=MS.gene36102 |
chr8.3 | exon | 52652634 | 52652648 | 52652634 | ID=MS.gene36102.t1.exon1;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52652634 | 52652648 | 52652634 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52652461 | 52652509 | 52652461 | ID=MS.gene36102.t1.exon2;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52652461 | 52652509 | 52652461 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52652280 | 52652349 | 52652280 | ID=MS.gene36102.t1.exon3;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52652280 | 52652349 | 52652280 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52652171 | 52652203 | 52652171 | ID=MS.gene36102.t1.exon4;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52652171 | 52652203 | 52652171 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52651451 | 52651508 | 52651451 | ID=MS.gene36102.t1.exon5;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52651451 | 52651508 | 52651451 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52651262 | 52651310 | 52651262 | ID=MS.gene36102.t1.exon6;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52651262 | 52651310 | 52651262 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52651079 | 52651169 | 52651079 | ID=MS.gene36102.t1.exon7;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52651079 | 52651169 | 52651079 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52650783 | 52650840 | 52650783 | ID=MS.gene36102.t1.exon8;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52650783 | 52650840 | 52650783 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52649696 | 52649753 | 52649696 | ID=MS.gene36102.t1.exon9;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52649696 | 52649753 | 52649696 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52649536 | 52649608 | 52649536 | ID=MS.gene36102.t1.exon10;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52649536 | 52649608 | 52649536 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52649376 | 52649411 | 52649376 | ID=MS.gene36102.t1.exon11;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52649376 | 52649411 | 52649376 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52649184 | 52649282 | 52649184 | ID=MS.gene36102.t1.exon12;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52649184 | 52649282 | 52649184 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52649021 | 52649056 | 52649021 | ID=MS.gene36102.t1.exon13;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52649021 | 52649056 | 52649021 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52648872 | 52648935 | 52648872 | ID=MS.gene36102.t1.exon14;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52648872 | 52648935 | 52648872 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52648644 | 52648692 | 52648644 | ID=MS.gene36102.t1.exon15;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52648644 | 52648692 | 52648644 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52648458 | 52648551 | 52648458 | ID=MS.gene36102.t1.exon16;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52648458 | 52648551 | 52648458 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52647632 | 52647677 | 52647632 | ID=MS.gene36102.t1.exon17;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52647632 | 52647677 | 52647632 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52646882 | 52647274 | 52646882 | ID=MS.gene36102.t1.exon18;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52646882 | 52647274 | 52646882 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52646681 | 52646803 | 52646681 | ID=MS.gene36102.t1.exon19;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52646681 | 52646803 | 52646681 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52645886 | 52645975 | 52645886 | ID=MS.gene36102.t1.exon20;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52645886 | 52645975 | 52645886 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52645537 | 52645698 | 52645537 | ID=MS.gene36102.t1.exon21;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52645537 | 52645698 | 52645537 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52645385 | 52645444 | 52645385 | ID=MS.gene36102.t1.exon22;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52645385 | 52645444 | 52645385 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52644806 | 52644904 | 52644806 | ID=MS.gene36102.t1.exon23;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52644806 | 52644904 | 52644806 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52644484 | 52644662 | 52644484 | ID=MS.gene36102.t1.exon24;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52644484 | 52644662 | 52644484 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
chr8.3 | exon | 52644270 | 52644405 | 52644270 | ID=MS.gene36102.t1.exon25;Parent=MS.gene36102.t1 |
chr8.3 | CDS | 52644270 | 52644405 | 52644270 | ID=cds.MS.gene36102.t1;Parent=MS.gene36102.t1 |
Gene Sequence |
Protein sequence |