AlfalfaGEDB | MS.gene67725

M. sativa cultivar XinJiangDaYe / MS.gene67725

KEGG: -
GO: GO:0005575 GO:0006457 GO:0008150 GO:0009987 GO:0016272 GO:0032991
PFAM: PF02996.20

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67725.t1	XP_003594716.1	100	192	0	0	1	192	1	192	4.40E-94	354

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67725.t1	P57741	81.8	181	33	0	2	182	4	184	1.8e-75	283.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67725.t1	G7IMS6	100.0	192	0	0	1	192	1	192	3.2e-94	354.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049411	MS.gene67725	0.806676	7.33E-50	-1.69E-46
MS.gene058245	MS.gene67725	0.867336	1.47E-65	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene000365	MS.gene67725	PPI
MS.gene002306	MS.gene67725	PPI
MS.gene003245	MS.gene67725	PPI
MS.gene003428	MS.gene67725	PPI
MS.gene009372	MS.gene67725	PPI
MS.gene011754	MS.gene67725	PPI
MS.gene01284	MS.gene67725	PPI
MS.gene013292	MS.gene67725	PPI
MS.gene014578	MS.gene67725	PPI
MS.gene015202	MS.gene67725	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67725.t1	MTR_2g033830	100.000	192	0	0	1	192	1	192	2.20e-139	387

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene67725.t1	AT5G49510	83.721	172	28	0	11	182	13	184	6.22e-107	305
MS.gene67725.t1	AT5G49510	83.721	172	28	0	11	182	13	184	6.22e-107	305

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Find 30 sgRNAs with CRISPR-Local

Find 307 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTGATTCTGTGTGTTTA+TGG	0.168432	2.2:+54965512	MS.gene67725:CDS
AACTGGCTCTAGCATTATCC+AGG	0.479058	2.2:-54965686	None:intergenic
AATTGCTCGTGTTTATAATT+GGG	0.358053	2.2:+54966123	MS.gene67725:CDS
ACAGAACGAAGAGGAATACC+AGG	0.644106	2.2:+54960881	MS.gene67725:CDS
AGACCTGAGTAATTGTCGTT+TGG	0.467839	2.2:-54965746	None:intergenic
AGCAAAGAAGGGCACCGGTG+AGG	0.645137	2.2:+54962923	MS.gene67725:CDS
AGCAACAAGAACTTCTAAAC+TGG	0.406664	2.2:-54965703	None:intergenic
AGTCCTCAAACGAACCTCAC+CGG	0.608080	2.2:-54962937	None:intergenic
ATAATTGGGATGTCCATCAA+CGG	0.640983	2.2:+54966137	MS.gene67725:CDS
CAAACCTATCTCACTCAATT+AGG	0.296890	2.2:+54960926	MS.gene67725:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAATGCAACAACTTTGGAT+TGG	-	chr2.2:54962327-54962346	None:intergenic	30.0%
AACACAGTGTTGTCAAATAT+CGG	-	chr2.2:54964205-54964224	None:intergenic	30.0%
AATGGGAGTTAATTCTACAT+TGG	-	chr2.2:54964255-54964274	None:intergenic	30.0%
AGAAAAGAAAATTGAAGGCA+TGG	-	chr2.2:54963382-54963401	None:intergenic	30.0%
AGATTTAGAGGTTAATGAGT+TGG	+	chr2.2:54962593-54962612	MS.gene67725:intron	30.0%
AGCATGACCCTTATATTAAT+AGG	-	chr2.2:54964559-54964578	None:intergenic	30.0%
ATAAGAATGCAAAGGAATGA+AGG	-	chr2.2:54965909-54965928	None:intergenic	30.0%
ATTACGGATGTAACATCATT+TGG	-	chr2.2:54964991-54965010	None:intergenic	30.0%
CAATTGCTCGTGTTTATAAT+TGG	+	chr2.2:54966122-54966141	MS.gene67725:CDS	30.0%
CATTCCTTTGCATTCTTATT+AGG	+	chr2.2:54965910-54965929	MS.gene67725:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2.2	gene	54960848	54966204	54960848	ID=MS.gene67725
chr2.2	mRNA	54960848	54966204	54960848	ID=MS.gene67725.t1;Parent=MS.gene67725
chr2.2	exon	54960848	54960987	54960848	ID=MS.gene67725.t1.exon1;Parent=MS.gene67725.t1
chr2.2	CDS	54960848	54960987	54960848	ID=cds.MS.gene67725.t1;Parent=MS.gene67725.t1
chr2.2	exon	54961918	54961975	54961918	ID=MS.gene67725.t1.exon2;Parent=MS.gene67725.t1
chr2.2	CDS	54961918	54961975	54961918	ID=cds.MS.gene67725.t1;Parent=MS.gene67725.t1
chr2.2	exon	54962873	54962944	54962873	ID=MS.gene67725.t1.exon3;Parent=MS.gene67725.t1
chr2.2	CDS	54962873	54962944	54962873	ID=cds.MS.gene67725.t1;Parent=MS.gene67725.t1
chr2.2	exon	54965454	54965573	54965454	ID=MS.gene67725.t1.exon4;Parent=MS.gene67725.t1
chr2.2	CDS	54965454	54965573	54965454	ID=cds.MS.gene67725.t1;Parent=MS.gene67725.t1
chr2.2	exon	54965663	54965764	54965663	ID=MS.gene67725.t1.exon5;Parent=MS.gene67725.t1
chr2.2	CDS	54965663	54965764	54965663	ID=cds.MS.gene67725.t1;Parent=MS.gene67725.t1
chr2.2	exon	54966118	54966204	54966118	ID=MS.gene67725.t1.exon6;Parent=MS.gene67725.t1
chr2.2	CDS	54966118	54966204	54966118	ID=cds.MS.gene67725.t1;Parent=MS.gene67725.t1

Gene Sequence

>MS.gene67725

ATGGCGTCTTCTTCGTCTTCATCATCAGCAGTGACAGAACGAAGAGGAATACCAGGTGCTCAGTTCGTTGAAGATGTTCAAACCTATCTCACTCAATTAGGTCTCGATGTTAATTCTGCTCTTGCTTTTCTTCAAGAAAGGTAATTTTTCTTTTCTTTTCTGATTTACTTTCTCAAAATCTCATTTTTCATGGATCTTCTTTGTTTTTACTGCTAGATCATATTGAATATTAGTTTTTATTTTCATTTGTATAGTTTAGTTTGGATGCAAGTTCATTTTGTTGTATAGTTGCATTTTGAATTAATTAATTTATAGCAAGTTTCTTCTGAAGTGTTATGGGGAGTTGGATTTGTATGACATTTTAGTACTTTATGGTGTGAAAGAGTATGTTTAGCGGCATCGACAAGTTAGTATCGTGTCCGGTGTCTATGTCAGTACTTCGTAGATAATTACTAACAGTAGGTTTTAGGTAAAGTATTAAGGTATTAAGATGAAAAGGGATGGATAATAACTTAAACTGAATGTGATTATGAGGTAAATTGGATTAATATAGGTTGTTTAGAAGAATGTACGATTACAGTCTTCGAAAATTTTGGTTTGAATTTCGGAGTGGTGAGAAAATTTGTGATTTTGGATTGGCTGCAAAGCAATAGTGATTGAAATCTGAATTTCATAATGAAGTAATTTTGGATAAATGATAATTTTGTTAACTGCTTCTGTATCACTGGTATGAAAGTTATAGTTAGATTAGTGAATGAGGTAGCTTGCAATGTGAATGAGGTAACTTTGAAAAGTATTGTACTTAGATTTTCATTCTCTGGATTCATTAACTGCATCCAGTTTGTAAAATTCGTTTTTTATCTATATTTTTTATGAATGGAATTTATCCATATGAAATGAAACACCTTGCTTTGTTATTAATAGTTGATTTTACTGAGAAAACATGTTTTGCAAGTTAATATTGCATTGGCTTAACACTTGAGAGTGAATTTATTTTATGCTTTAAAGGGGATTTAACTTTTATTTATAAGTTTTTGTGTGAATGATGTCTGAGCATATATTTCTTGCAGGCTTCAGCAATACAAGGTTGTTGAAATGAAGCTCCTCGCGCAGCAAAGGGAACTTCAGGTATTGTTGAAATGAAGCATATTATACTTTATCTTTAGGTTTTGTTACCTTGTAGTTTGTTAATAGTTTGATTGAAGATAAAAAGGAAAATTATCTTACTATATTTGAAACTAGAAAGACCAATGATATTTTAAGATTTCAACTTCTGGAAAGGACACATACAAATTTCGCATTTTTATGCCAGCATAGGCTGCTGGCTGAAACGAGCAGTAAACTCTATGTTTTGGGATCGTGTTATGGGATTCAATAATATAACTTTTCGTTTTGAAAACATGCATGGGCTTAAACAAGACTAGACAGTTTGGTCTAAAGTAAACTGAGTTGCAGTGTATTTGCAATGATTAAACTCCAATCCAAAGTTGTTGCATTTTCTGCACTTTGATTAAAAAAATGTCGTTTCTGAATGCTTTAATTCAATCATAATTACCTTTCTAATTGATTTGGGGTAGTACCTATAGTAGAGAAGATGTTAGAAAACAGGCTTAGGTTGTTTGGGCATGTAGAGAGGAGACATGTAGATGTAGATGTAGTGCGAAGAGTAAGTCATATGGAGGAGAGTCGGATCAAAAAAGGTAGAGGAAGACCTATAAAAAACTATTAAGAGAAACTATTAGGAAAGATTTAGAGGTTAATGAGTTGGATCCAAATATGGTTTGTGATAGAACATTATGGTGTAATTTAATCCATGTAGCCGACCCCACTTAGTGGGATAAGGTTTGGTTGTTGTTGTTGTTTTAAAGTTTCAAGTAAAGCAAGAAAATAATGTTGTTTGTTTGTTCTATTTTGGTCACTAGTTTTCAACATGAAACAATTCATCCAAATGCTATTCTGTGTGTGTGTGTGTGTGTTCATTTTCTTTCAGTACATAGTAGTGACACTATTTGTGGTGGTTTGCAGGCTAAGATACCTGATATTGAAAAGTGCTTAGATGTTGTTGCGACTTTGCAAGCAAAGAAGGGCACCGGTGAGGTTCGTTTGAGGACTGATTTTCTATAACAAACTATAGTAGTAGATAAATTTTAGATAAAAGGTTTTTGGACATATATCTTTCAAATGTTCAGATTGGCTGTTAACAGACTGCTTAAATCTGAAATTTTGTGCATTTTATTTGGTTGTGCTGCACTTACAAGTTACAATGTATGCAATAATTTTAATATTACTATTTACTACATCCTTAAGAGGTTCTGATTTCTCAATAATATACAAGCACTAATTACATGGCTGACCTTTTGTCTAGAGGTATATTTATTTGTTCTTGTTGTCACATGATGGCTGCATATAGATCATTTCATTTTCCTGTTTGTGTCATCCACGAAGAAGTTAATGGCTCGAGCCCCCATGTTTAATTGTTAAATTTCAATGCTGCTGCTTGTTTCATTTTTCTAGTTTTGTGACATTTACTTCCATGCCTTCAATTTTCTTTTCTGGGTATGTCAAGTTTATACGTGAAAACGTTTTTTTGCCTGCTGGAATTTGGCTATTGATTGTCAACCCCTAATAGTTGATTCATCATCTCAGCTACTAGAATTTATTTTCTGTCTTATAACATTGATAAATGATTAATTTTCCCCACATAAAGATGTAGTTCTAAACACATAGTTATGAGAATTCATGTTTGTGCTGAATGCACTGCATCGTGAAGTCCTAGAAAAGGATTTTTTGTTTATGCTGAATGCACTACAGTGCTTTCATATTGACACAAGTACTCATGAACAGAACAACAGGTTTTTGTTCATTATTTATTAGCTAGTTTTAAACTTGCATTTGTTAGATTGTGTCCTAAACTCTTCTAGTTAGAACTCTTTGGCTATCTGCACATTAGTGCACAAGAACAAAATGTCAGAATAAGTGTGACATGAAACTTAATACTACTGTAACCAAAGCCTTTTGTCACTAGTTGGTGTTGGCTACAAAGATCAGACAATAACCCGATGTCCTATCATGTATCGTGTCGGATGACAAACTATTTAAATTCAAATGCTTCTTAATGGTTTCACTATACCTTGAATCATTGGTCTGTTCTTCCGGTCCTCCTTAACTAATGCTTTTAAGGGCCGTCTCAACCCATGTCCAACTCATTTATGACAAGACTGCCATATCATTCCTGTAGGTGTCACTCTAATCATGTTTTGTCAGTGTTGTCCATGACAGAGAGCCAAAAACTGTCATACCAGCCGCCTCCATCCTTCACAAAATTGGCTACGGCGGAAAGCCAAAAACCCACCACCGATATTTGACAACACTGTGTTTTGTGTAGCACACATTCATTTAATATTCCAATGTAGAATTAACTCCCATTAAAGAAACCCGAAATACTCCCTTAAGTGTGGAGTATTATCCAATTCTAACTTAGACAATGTTTTAAGAAAACTATATATCAAATAATAATCAAAGTCCTCCATTAAATAAGGCATCTTAAGGATATTGTATCCTTAAGATAATAAAATCCTAAACAAATTAAAGTAATAGATCAGTCCTACCCTAATTAAACAGTATAATCTTAGTAAAATATAAATTTTGTTGAACTAGATATCTTATCAAAGATAAATCTCTAAAATTAAGGAATATATCAATCAATATCCTATTAATATAAGGGTCATGCTAACAAGTGCACGCTTGTTAAGGATTCAAAAATGGAAATAATTGATAAGTTTTATGTAGAAAAAGTTACTTTTTAAAATTTCAATGTGTTGAATACACCGTTTCCAAGATAAAACTTCCTCTTTAGATTTCTAAACAAGCGCCCTTAGGTCACTTGTTAGCATTTCCCTTAATTATCTTGAAATTTATAGATTGAATGTATTGTATATAATCAATCTTAATATATTATTGCATCATCCCCCCTCTGGACGATTTTACCTAGCATTAAACATACAGTACTCCTTCATAGAGTTTGAACAATTCCCTAAATTATACCTTTATATAATTCTTTTTTTCAAATGGGGAATTAAGTTGATTTCAAATGTTCGAATGTTATGGTCTATCTCAAATTTGCATCTTGTTTAGGTAATTCCAAATGATGTTACATCCGTAATGTAGAATGTGAATGGGTGTGCTTGGTGTCATATGTTCAAGCCGCACCCTTTCCAGGACTAACATACAACCCCTACCCTGCAAGAAAATTATCAACACTATTGCAAATAACATTGTATTTTGTCAATGGTAACGATATTACTGCTACTGCTAGTATGCAATGCCTTACACGTAGTACTTTTATATCAGTTACATTGAAAACTAAGGTCTGTGTGTGGTCAAAATCCTTTTTATACAATAGTTACTGCTAGTATGCTATGGACTCTGGAGCCCTAAGTAACGATTATCAATTCCTCATCATTTTGTGTAGTAAAAAAGATTTAATTTTGATCCATTTTGAAGCCTTATGATGCAACTATTTAAAACCATTTTAAATTCATTTACTACAAGCGAAAATGTTAGTTGTTTTAGAAACTAGAAGATTTATGTTTGACTTTGGATACAGGAACTTATTGCCGATTTTGAGGTGTCAGAAGGCATATATTCACGAGCTTCCATCGAAGAAACTGATTCTGTGTGTTTATGGCTGGGAGCAAATGTTATGTTGGAATATTCATTAGAAGAGGTACTTGTATTTTAGTTTTGGGTATTATAGTTGTTTTTTCCTCGGTTAAATTTTAACTTACATAAGAACAATATGATTTTCTGTTGCAGGCTACTGCTCTTCTACAGAAAAACCTGGATAATGCTAGAGCCAGTTTAGAAGTTCTTGTTGCTGATCTACTGTTTTTAAGGGACCAAACGACAATTACTCAGGTCTTATTGCTAACTATCAAGTGCCTCATTTTTTTTGCTTTTCACACATTACAATAAAATGTAAATTTATGTTAACATCAGAGGGAGAGGGGTGTAAGAATATTTATTTACTGCAAACCATAAACTGCAGCAGCACATTTTCCTTCATTCCTTTGCATTCTTATTAGGCAAGCATGCAATGTAATGTTTTCAACTCATTACTTCGAACGTTCTCATCTTCTCTCCTCCAGCTTCATGCCTACCATGGACACCCTTATAGATGCATCTGGGATATTTGAATAGCCTTTTATTTTATTTTTTGCATTGACAATAACTATCTTTTGACTTTAGTTATTGATTGTATATGTTATCAGGTTACAATTGCTCGTGTTTATAATTGGGATGTCCATCAACGGAGAACTCAACAAGCTGCTGCAGCTACTACAATTGCTCAAGAGTAG

Protein sequence

>MS.gene67725.t1

MASSSSSSSAVTERRGIPGAQFVEDVQTYLTQLGLDVNSALAFLQERLQQYKVVEMKLLAQQRELQAKIPDIEKCLDVVATLQAKKGTGEELIADFEVSEGIYSRASIEETDSVCLWLGANVMLEYSLEEATALLQKNLDNARASLEVLVADLLFLRDQTTITQVTIARVYNWDVHQRRTQQAAAATTIAQE