Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36325.t1 | XP_003597734.2 | 95.1 | 993 | 44 | 3 | 1 | 989 | 1 | 992 | 0.00E+00 | 1362.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36325.t1 | Q0WVL7 | 54.5 | 993 | 405 | 9 | 1 | 983 | 1 | 956 | 2.4e-216 | 753.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36325.t1 | Q2HU52 | 95.1 | 993 | 44 | 3 | 1 | 989 | 1 | 992 | 0.0e+00 | 1362.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049142 | MS.gene36325 | 0.80503 | 1.63E-49 | -1.69E-46 |
| MS.gene049786 | MS.gene36325 | 0.810884 | 9.23E-51 | -1.69E-46 |
| MS.gene050551 | MS.gene36325 | 0.825066 | 5.74E-54 | -1.69E-46 |
| MS.gene050654 | MS.gene36325 | 0.806304 | 8.78E-50 | -1.69E-46 |
| MS.gene051343 | MS.gene36325 | 0.81921 | 1.31E-52 | -1.69E-46 |
| MS.gene052307 | MS.gene36325 | 0.827507 | 1.51E-54 | -1.69E-46 |
| MS.gene052609 | MS.gene36325 | 0.833806 | 4.32E-56 | -1.69E-46 |
| MS.gene052776 | MS.gene36325 | 0.80583 | 1.10E-49 | -1.69E-46 |
| MS.gene053079 | MS.gene36325 | 0.804236 | 2.38E-49 | -1.69E-46 |
| MS.gene053143 | MS.gene36325 | 0.812138 | 4.93E-51 | -1.69E-46 |
| MS.gene054824 | MS.gene36325 | 0.813623 | 2.33E-51 | -1.69E-46 |
| MS.gene055513 | MS.gene36325 | 0.822663 | 2.10E-53 | -1.69E-46 |
| MS.gene056045 | MS.gene36325 | 0.804502 | 2.09E-49 | -1.69E-46 |
| MS.gene056097 | MS.gene36325 | 0.805476 | 1.31E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene36325 | 0.850966 | 1.21E-60 | -1.69E-46 |
| MS.gene056308 | MS.gene36325 | 0.837951 | 3.84E-57 | -1.69E-46 |
| MS.gene056390 | MS.gene36325 | 0.800031 | 1.74E-48 | -1.69E-46 |
| MS.gene056507 | MS.gene36325 | 0.831986 | 1.22E-55 | -1.69E-46 |
| MS.gene058639 | MS.gene36325 | 0.807421 | 5.10E-50 | -1.69E-46 |
| MS.gene059725 | MS.gene36325 | 0.81745 | 3.28E-52 | -1.69E-46 |
| MS.gene060933 | MS.gene36325 | 0.800105 | 1.68E-48 | -1.69E-46 |
| MS.gene061006 | MS.gene36325 | 0.820643 | 6.16E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene36325 | 0.806549 | 7.80E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene36325 | MS.gene003352 | PPI |
| MS.gene36325 | MS.gene02144 | PPI |
| MS.gene36325 | MS.gene02757 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36325.t1 | MTR_2g101700 | 98.087 | 993 | 14 | 3 | 1 | 989 | 1 | 992 | 0.0 | 1941 |
| MS.gene36325.t1 | MTR_2g101700 | 98.473 | 917 | 13 | 1 | 73 | 989 | 1 | 916 | 0.0 | 1793 |
| MS.gene36325.t1 | MTR_2g043010 | 61.441 | 236 | 70 | 6 | 243 | 478 | 73 | 287 | 2.39e-69 | 234 |
| MS.gene36325.t1 | MTR_2g043010 | 75.000 | 48 | 11 | 1 | 1 | 48 | 1 | 47 | 4.56e-13 | 71.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36325.t1 | AT1G79830 | 62.450 | 1004 | 308 | 18 | 1 | 983 | 1 | 956 | 0.0 | 1050 |
| MS.gene36325.t1 | AT1G79830 | 62.450 | 1004 | 308 | 18 | 1 | 983 | 1 | 956 | 0.0 | 1050 |
| MS.gene36325.t1 | AT1G79830 | 62.450 | 1004 | 308 | 18 | 1 | 983 | 1 | 956 | 0.0 | 1050 |
| MS.gene36325.t1 | AT1G79830 | 62.251 | 1004 | 310 | 18 | 1 | 983 | 1 | 956 | 0.0 | 1047 |
| MS.gene36325.t1 | AT1G79830 | 61.230 | 1024 | 308 | 19 | 1 | 983 | 1 | 976 | 0.0 | 1036 |
Find 190 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACCCTGTCTTGGCCTTTA+TGG | 0.167594 | 2.2:+1992746 | MS.gene36325:CDS |
| CTCTGCTGCTTTGGAGTTGA+TGG | 0.206713 | 2.2:+2001265 | MS.gene36325:CDS |
| AGCTTTAATTGAAGATTTAA+AGG | 0.210765 | 2.2:+1994780 | MS.gene36325:CDS |
| AATTTCAGATTTCATGTCTT+AGG | 0.212074 | 2.2:+1999305 | MS.gene36325:intron |
| TGCGGATATTGTCGATTTAA+AGG | 0.215036 | 2.2:+2002018 | MS.gene36325:CDS |
| CTCACCTTTGTTCCCCATAA+AGG | 0.278682 | 2.2:-1992760 | None:intergenic |
| AAAAGTGGCCTTGTAGATTC+TGG | 0.284871 | 2.2:-1998848 | None:intergenic |
| CACCCTCTCCAACTCAAGTT+TGG | 0.291693 | 2.2:-1993642 | None:intergenic |
| AACCCTGTCTTGGCCTTTAT+GGG | 0.292758 | 2.2:+1992747 | MS.gene36325:CDS |
| AGACTCAACTTCAGCTTCAT+TGG | 0.293473 | 2.2:-1995422 | None:intergenic |
| AGTCAACTTACTTGTGAATA+AGG | 0.303136 | 2.2:+2002057 | MS.gene36325:CDS |
| TTCACAGCTCCCGCCAAATC+AGG | 0.315462 | 2.2:-1992247 | None:intergenic |
| ATCTGAGGTGGTATCTGATT+TGG | 0.316140 | 2.2:+1993499 | MS.gene36325:CDS |
| GAGGAGGCACTCTGCTGCTT+TGG | 0.323174 | 2.2:+2001256 | MS.gene36325:CDS |
| CTCTCTACTGCAAGCTCTCT+TGG | 0.327250 | 2.2:+2000162 | MS.gene36325:CDS |
| AGGTTGCTGAACTCATTATC+TGG | 0.328464 | 2.2:-2002174 | None:intergenic |
| AAGCAAGTTCACCCTCCTTC+TGG | 0.341526 | 2.2:-2000326 | None:intergenic |
| GAAACACAAGCAAGAGTTGC+AGG | 0.342334 | 2.2:+1999477 | MS.gene36325:CDS |
| AGCCCAAGCTTCAGCTCTTC+TGG | 0.342584 | 2.2:-1998994 | None:intergenic |
| TATATCTGTTTCAATATTGT+TGG | 0.342848 | 2.2:-1993573 | None:intergenic |
| AGGTTCAGATTCTTGCTTAG+AGG | 0.348735 | 2.2:-1992817 | None:intergenic |
| AATCTACAATAAGGAAACTT+AGG | 0.349826 | 2.2:+1997744 | MS.gene36325:CDS |
| ATGGACTGGTGTTCATTATA+CGG | 0.354571 | 2.2:-1993458 | None:intergenic |
| TGGAACAACTGTACAGGATT+TGG | 0.354635 | 2.2:+1993010 | MS.gene36325:CDS |
| CATTCAGAAGTCCGAGAATT+CGG | 0.356558 | 2.2:+1993094 | MS.gene36325:CDS |
| TTTCCAGCTTCAGAATCTTC+AGG | 0.356615 | 2.2:+1992693 | MS.gene36325:intron |
| CTCGGTATCGTCTGATGTCT+CGG | 0.360971 | 2.2:-1993366 | None:intergenic |
| GTCTCAGCTCTTCAAGTGCC+TGG | 0.366063 | 2.2:-1998478 | None:intergenic |
| ATACGGTTGATCGGTGCTAT+TGG | 0.370912 | 2.2:-1993441 | None:intergenic |
| GGATGAACAGCAGCAGTTAC+CGG | 0.384436 | 2.2:+1993043 | MS.gene36325:CDS |
| GGAGAGGTTGCTGTGCTGCC+TGG | 0.385183 | 2.2:+2001206 | MS.gene36325:CDS |
| GACTTCTGAATGGGAGATTC+GGG | 0.393514 | 2.2:-1993083 | None:intergenic |
| CTACTCAAGAATCTACAATA+AGG | 0.401149 | 2.2:+1997735 | MS.gene36325:CDS |
| TTCTTCTGAACGGAGAAATC+CGG | 0.404553 | 2.2:+2000236 | MS.gene36325:CDS |
| GGACTTCTGAATGGGAGATT+CGG | 0.412253 | 2.2:-1993084 | None:intergenic |
| AAAGGCTGCTCGATCAGATC+TGG | 0.412649 | 2.2:+1999962 | MS.gene36325:CDS |
| ACCACCTCAGATGATTCATT+TGG | 0.412715 | 2.2:-1993488 | None:intergenic |
| AGGGTTGACTACTAAACTTC+AGG | 0.414259 | 2.2:+1997897 | MS.gene36325:CDS |
| AAGGGCAGCCTCAAAAGAAC+TGG | 0.416899 | 2.2:-2000301 | None:intergenic |
| AATTAATGTTCTTGAGGCTC+AGG | 0.420129 | 2.2:+1999213 | MS.gene36325:CDS |
| TGCCAGAAGAGCTGAAGCTT+GGG | 0.428713 | 2.2:+1998992 | MS.gene36325:CDS |
| TTTCAATATTGTTGGCAAGA+TGG | 0.430289 | 2.2:-1993565 | None:intergenic |
| TGAGTTGGAGAGGGTGAAGA+GGG | 0.438761 | 2.2:+1993649 | MS.gene36325:CDS |
| GGGGAACTTCCCTGATTTGG+CGG | 0.444852 | 2.2:+1992237 | MS.gene36325:CDS |
| TGAAATAATCACTCAAGTTA+TGG | 0.446034 | 2.2:+1995975 | MS.gene36325:CDS |
| GGATCATGTTCCTGTGGCTG+AGG | 0.448404 | 2.2:+1992869 | MS.gene36325:CDS |
| GCTAATCGAATCCGAATTCT+CGG | 0.449425 | 2.2:-1993105 | None:intergenic |
| TTGAGTTGGAGAGGGTGAAG+AGG | 0.454308 | 2.2:+1993648 | MS.gene36325:CDS |
| CGAATTCTCGGACTTCTGAA+TGG | 0.454392 | 2.2:-1993093 | None:intergenic |
| TAATGCTTTGGCTGCTGCTA+AGG | 0.455514 | 2.2:+1998358 | MS.gene36325:CDS |
| AGAGTATTACACTAATGCTT+TGG | 0.456673 | 2.2:+1998346 | MS.gene36325:CDS |
| ATTTCAGATTTCATGTCTTA+GGG | 0.457515 | 2.2:+1999306 | MS.gene36325:intron |
| GGAGATTCGGGTAATTCAAC+AGG | 0.458303 | 2.2:-1993071 | None:intergenic |
| TTATGCTCTCACCAAGGAAC+GGG | 0.459802 | 2.2:+1995891 | MS.gene36325:CDS |
| GTGGAAGTTTGTTCTGATGA+TGG | 0.462284 | 2.2:-2000011 | None:intergenic |
| ATGCCAGAAGAGCTGAAGCT+TGG | 0.463790 | 2.2:+1998991 | MS.gene36325:CDS |
| CAGCCCATGGTTTCTAACCT+TGG | 0.464058 | 2.2:+1993188 | MS.gene36325:CDS |
| GTCATGCTCTTCATATAGTA+AGG | 0.468709 | 2.2:-2000276 | None:intergenic |
| TGATGCAGCTGCTCTATTGA+AGG | 0.469147 | 2.2:+1995945 | MS.gene36325:CDS |
| AGGTCGTGCTAGACAGTTTG+AGG | 0.475906 | 2.2:+1999432 | MS.gene36325:CDS |
| GGGAACTTCCCTGATTTGGC+GGG | 0.477952 | 2.2:+1992238 | MS.gene36325:CDS |
| AACTCTTAATTCTCGACTAC+AGG | 0.478064 | 2.2:+1999028 | MS.gene36325:CDS |
| CTCGGATTCCAAACTTGAGT+TGG | 0.481075 | 2.2:+1993634 | MS.gene36325:CDS |
| AGCTAGAAGCACTGAGGAGG+AGG | 0.485854 | 2.2:+2001240 | MS.gene36325:CDS |
| GGCTGCCCTTCGCCAGAAGG+AGG | 0.486586 | 2.2:+2000314 | MS.gene36325:CDS |
| GGCACTATTTAACCCTGTCT+TGG | 0.487447 | 2.2:+1992737 | MS.gene36325:CDS |
| AGTGATGTGCATGATACTAT+TGG | 0.488010 | 2.2:+1993263 | MS.gene36325:CDS |
| GGTTTCAACTCTAGAGAGAA+AGG | 0.488023 | 2.2:+1995468 | MS.gene36325:CDS |
| CTTCAGAATCTTCAGGATCA+TGG | 0.488129 | 2.2:+1992700 | MS.gene36325:intron |
| TAGCATAGATTCACGTTCCT+CGG | 0.490816 | 2.2:-1998453 | None:intergenic |
| TTCCCCATAAAGGCCAAGAC+AGG | 0.491511 | 2.2:-1992750 | None:intergenic |
| GGACTCATGCTTAGTTCTCC+CGG | 0.492273 | 2.2:-2000255 | None:intergenic |
| GAATTCTCGGACTTCTGAAT+GGG | 0.492340 | 2.2:-1993092 | None:intergenic |
| ATCTACAATAAGGAAACTTA+GGG | 0.494156 | 2.2:+1997745 | MS.gene36325:CDS |
| TGATTCTCTTGCTGAAGAGT+TGG | 0.499182 | 2.2:+2000910 | MS.gene36325:CDS |
| AGCTGCTCTATTGAAGGAAA+AGG | 0.499765 | 2.2:+1995951 | MS.gene36325:CDS |
| AATAAGGAAACTTAGGGCTC+AGG | 0.503704 | 2.2:+1997751 | MS.gene36325:CDS |
| TCTGCTGCTTTGGAGTTGAT+GGG | 0.504224 | 2.2:+2001266 | MS.gene36325:CDS |
| CGTCATAACTGCACTTTCCA+AGG | 0.504798 | 2.2:-1993162 | None:intergenic |
| AAGGCAAATTGAAGCCATGC+AGG | 0.505415 | 2.2:+1998871 | MS.gene36325:CDS |
| GTCTCGAATTAATGTTCTTG+AGG | 0.506704 | 2.2:+1999207 | MS.gene36325:CDS |
| ACGAAGCGTATCCCGTTCCT+TGG | 0.507412 | 2.2:-1995902 | None:intergenic |
| CTTGGAGATGATGTAGTTGA+GGG | 0.508626 | 2.2:+1993206 | MS.gene36325:CDS |
| GGTAATTCAACAGGCATCTC+CGG | 0.509267 | 2.2:-1993062 | None:intergenic |
| TGAGGCTGCCCTTCGCCAGA+AGG | 0.511547 | 2.2:+2000311 | MS.gene36325:CDS |
| AGGTGCTGCAAGACAAGCTC+AGG | 0.512299 | 2.2:+1993700 | MS.gene36325:CDS |
| TCAGGATCATGGCCTACTGA+TGG | 0.513179 | 2.2:+1992711 | MS.gene36325:CDS |
| GCTTCAATTTGCCTTAAAAG+TGG | 0.514353 | 2.2:-1998863 | None:intergenic |
| AGCAGAATTATGCTTTGTTG+TGG | 0.515039 | 2.2:-2000030 | None:intergenic |
| ATCTCCAAGGTTAGAAACCA+TGG | 0.515487 | 2.2:-1993192 | None:intergenic |
| TGCAAGCTCTCTTGGAAGCA+TGG | 0.516788 | 2.2:+2000170 | MS.gene36325:CDS |
| TCATATGTTTATTACCTGCA+TGG | 0.518042 | 2.2:-1998885 | None:intergenic |
| TCGGTATCGTCTGATGTCTC+GGG | 0.519185 | 2.2:-1993365 | None:intergenic |
| TCTTCTGAACGGAGAAATCC+GGG | 0.521617 | 2.2:+2000237 | MS.gene36325:CDS |
| GTTCACCCTCCTTCTGGCGA+AGG | 0.523275 | 2.2:-2000320 | None:intergenic |
| ATTAAGTAGGACCCTTGAAA+AGG | 0.523678 | 2.2:+1999342 | MS.gene36325:CDS |
| GATTGCTGAAGTGGGAACCT+TGG | 0.524196 | 2.2:+1993145 | MS.gene36325:CDS |
| ATAAAGTAGAAAGCATCAAG+AGG | 0.526612 | 2.2:+1998252 | MS.gene36325:CDS |
| GAGGGCAGCTGAAAGTAGGC+AGG | 0.530159 | 2.2:+1999372 | MS.gene36325:CDS |
| CCTTGGAGATGATGTAGTTG+AGG | 0.532641 | 2.2:+1993205 | MS.gene36325:CDS |
| ATTGGATTCTTCAGAAGCTA+CGG | 0.533876 | 2.2:-1993423 | None:intergenic |
| ACCCTGTCTTGGCCTTTATG+GGG | 0.536025 | 2.2:+1992748 | MS.gene36325:CDS |
| TGATTCATTTGGAGTAGCAA+TGG | 0.538452 | 2.2:-1993477 | None:intergenic |
| GAGGGTAGTACTAGTGAGCT+TGG | 0.539026 | 2.2:+1993224 | MS.gene36325:CDS |
| AGAGAAAGAGATTGCTGAAG+TGG | 0.541081 | 2.2:+1993136 | MS.gene36325:CDS |
| ACACAGGGAGCTTCTTCAGC+AGG | 0.541484 | 2.2:+1999510 | MS.gene36325:CDS |
| GAAGAGGGAGATGAAAATGA+TGG | 0.544891 | 2.2:+1993664 | MS.gene36325:CDS |
| ATCACTCAAGTTATGGCAGA+AGG | 0.545175 | 2.2:+1995982 | MS.gene36325:CDS |
| ATTAAGTAGAAAGGAACAGC+AGG | 0.545287 | 2.2:+1998505 | MS.gene36325:CDS |
| GACAGAGGGCAGCTGAAAGT+AGG | 0.548755 | 2.2:+1999368 | MS.gene36325:CDS |
| GTCTTTGGATCATGTTCCTG+TGG | 0.549614 | 2.2:+1992863 | MS.gene36325:CDS |
| ATGATGGAGGCAGCATTACA+AGG | 0.551221 | 2.2:+1993680 | MS.gene36325:CDS |
| CAGAACAAACTCAATTAAGT+AGG | 0.552433 | 2.2:+1999329 | MS.gene36325:CDS |
| CACAAGTTCCAGAATCTACA+AGG | 0.552619 | 2.2:+1998840 | MS.gene36325:CDS |
| TGCAGGAGGCATTGATACAC+AGG | 0.553339 | 2.2:+1999494 | MS.gene36325:CDS |
| CAGGATCATGGCCTACTGAT+GGG | 0.553825 | 2.2:+1992712 | MS.gene36325:CDS |
| GAGACAAACATTAAGTAGAA+AGG | 0.554718 | 2.2:+1998496 | MS.gene36325:CDS |
| AAGCTAGATTAGAGATCTTG+AGG | 0.559554 | 2.2:+1997864 | MS.gene36325:intron |
| TTCACCCTCCTTCTGGCGAA+GGG | 0.560574 | 2.2:-2000319 | None:intergenic |
| GTGTTCATTATACGGTTGAT+CGG | 0.561106 | 2.2:-1993450 | None:intergenic |
| AATTGTTGAAGAAAATGAAA+GGG | 0.563260 | 2.2:+1993541 | MS.gene36325:CDS |
| CAATTGTTGAAGAAAATGAA+AGG | 0.565085 | 2.2:+1993540 | MS.gene36325:CDS |
| AGGAGAGTAAAGAAGAAGAG+AGG | 0.565281 | 2.2:+1993300 | MS.gene36325:CDS |
| TGAAGAAATCACTGTACAAG+AGG | 0.567135 | 2.2:+1992935 | MS.gene36325:CDS |
| GCAGGAATATCTTGCTGCAA+AGG | 0.568058 | 2.2:+1999390 | MS.gene36325:CDS |
| ACGTGAATCTATGCTAGTCC+AGG | 0.568292 | 2.2:+1998460 | MS.gene36325:CDS |
| CATTTGGAGTAGCAATGGAC+TGG | 0.569332 | 2.2:-1993472 | None:intergenic |
| GCTGCCCTTCGCCAGAAGGA+GGG | 0.572864 | 2.2:+2000315 | MS.gene36325:CDS |
| TCACAGCTCCCGCCAAATCA+GGG | 0.577196 | 2.2:-1992246 | None:intergenic |
| GCTGCTGTTCATCCTTTCTG+TGG | 0.579023 | 2.2:-1993034 | None:intergenic |
| GTTGGTCAAATTGACAGCAC+AGG | 0.581379 | 2.2:+2000928 | MS.gene36325:CDS |
| TGCTTCGTATATGTCACGCC+TGG | 0.581600 | 2.2:+2000344 | MS.gene36325:CDS |
| AGTGGATGGAACAACTGTAC+AGG | 0.582605 | 2.2:+1993004 | MS.gene36325:CDS |
| GAGTCGTCTAAGAGAAGCCG+AGG | 0.582632 | 2.2:+1998436 | MS.gene36325:CDS |
| TTCCAAACTTGAGTTGGAGA+GGG | 0.583990 | 2.2:+1993640 | MS.gene36325:CDS |
| GAGAAAGAGATTGCTGAAGT+GGG | 0.584044 | 2.2:+1993137 | MS.gene36325:CDS |
| GATCATGTTCCTGTGGCTGA+GGG | 0.586495 | 2.2:+1992870 | MS.gene36325:CDS |
| ACAGGATTTGGACCACAGAA+AGG | 0.591127 | 2.2:+1993022 | MS.gene36325:CDS |
| ATCATGGCCTACTGATGGGA+AGG | 0.591459 | 2.2:+1992716 | MS.gene36325:CDS |
| GAGGGAGATGAAAATGATGG+AGG | 0.592579 | 2.2:+1993667 | MS.gene36325:CDS |
| CTGCTCGATCAGATCTGGAA+AGG | 0.593349 | 2.2:+1999967 | MS.gene36325:CDS |
| GCGAGAGGAATACCATCAGA+GGG | 0.596237 | 2.2:+1995447 | MS.gene36325:CDS |
| CTAGAGTTGAAACCCTCTGA+TGG | 0.596894 | 2.2:-1995459 | None:intergenic |
| GGAATATCTTGCTGCAAAGG+AGG | 0.597481 | 2.2:+1999393 | MS.gene36325:CDS |
| AGTTATGACGCAGCAGCCCA+TGG | 0.597595 | 2.2:+1993175 | MS.gene36325:CDS |
| TTTATGCTCTCACCAAGGAA+CGG | 0.599224 | 2.2:+1995890 | MS.gene36325:CDS |
| CATCTGACAGTTCTTCTGAA+CGG | 0.605825 | 2.2:+2000226 | MS.gene36325:CDS |
| ATTCCAAACTTGAGTTGGAG+AGG | 0.606549 | 2.2:+1993639 | MS.gene36325:CDS |
| CAGAGCTAGAAGCACTGAGG+AGG | 0.610099 | 2.2:+2001237 | MS.gene36325:CDS |
| GGCAAGTGAAAGACGTTGTG+AGG | 0.610203 | 2.2:+1998808 | MS.gene36325:intron |
| AACACAAAATATGCATGACT+CGG | 0.610592 | 2.2:+1993616 | MS.gene36325:CDS |
| TGCGAGAGGAATACCATCAG+AGG | 0.613923 | 2.2:+1995446 | MS.gene36325:CDS |
| TTGGCCTTTATGGGGAACAA+AGG | 0.615048 | 2.2:+1992756 | MS.gene36325:CDS |
| GGAGTCTGAAGCATTAGCAG+AGG | 0.618572 | 2.2:+1998379 | MS.gene36325:CDS |
| AAGAACATTAATTCGAGACA+AGG | 0.618583 | 2.2:-1999203 | None:intergenic |
| TAAAGTAGAAAGCATCAAGA+GGG | 0.620228 | 2.2:+1998253 | MS.gene36325:CDS |
| CCCTTGAAAAGGAGAGACAG+AGG | 0.622268 | 2.2:+1999353 | MS.gene36325:CDS |
| GGAACATGATCCAAAGACTC+AGG | 0.623609 | 2.2:-1992858 | None:intergenic |
| TCCAAATGAATCATCTGAGG+TGG | 0.625257 | 2.2:+1993487 | MS.gene36325:CDS |
| AACAGATAAAAGAGACAATG+TGG | 0.626700 | 2.2:+1992908 | MS.gene36325:CDS |
| TCTCCAAGGTTAGAAACCAT+GGG | 0.627985 | 2.2:-1993191 | None:intergenic |
| TCCCCATAAAGGCCAAGACA+GGG | 0.628083 | 2.2:-1992749 | None:intergenic |
| CACACAGAGGAGAATGTAGA+GGG | 0.628408 | 2.2:+1993326 | MS.gene36325:CDS |
| ATCTGAACCTGAGATGTCAG+AGG | 0.632791 | 2.2:+1992830 | MS.gene36325:CDS |
| GAGGAAGCTGACACTCAAGA+AGG | 0.633887 | 2.2:+1999412 | MS.gene36325:CDS |
| ATGAAATCTACAGGAAGCTG+AGG | 0.634312 | 2.2:+1999123 | MS.gene36325:intron |
| GTGTGAAAAGCTGCGTGGAG+AGG | 0.635184 | 2.2:+2001190 | MS.gene36325:intron |
| GTGCACGAGACAGAAGAAGA+TGG | 0.638533 | 2.2:+1992966 | MS.gene36325:CDS |
| GATGGGTGAACGTGATGAAG+AGG | 0.640970 | 2.2:+2001283 | MS.gene36325:CDS |
| TGGTGAGCATGTAGAGTCAG+TGG | 0.643896 | 2.2:+1992986 | MS.gene36325:CDS |
| TATTGGAGTTGAGACAGAAG+AGG | 0.643976 | 2.2:+1993280 | MS.gene36325:CDS |
| TGAAGTTGAGTCTTTGCGAG+AGG | 0.645009 | 2.2:+1995432 | MS.gene36325:CDS |
| TACTCCAAATGAATCATCTG+AGG | 0.649071 | 2.2:+1993484 | MS.gene36325:CDS |
| GAATCTAGTAATAATGAACA+AGG | 0.649103 | 2.2:+1992343 | MS.gene36325:CDS |
| ACACACAGAGGAGAATGTAG+AGG | 0.653002 | 2.2:+1993325 | MS.gene36325:CDS |
| CCTCAACTACATCATCTCCA+AGG | 0.655045 | 2.2:-1993205 | None:intergenic |
| GAGCATGTAGAGTCAGTGGA+TGG | 0.656567 | 2.2:+1992990 | MS.gene36325:CDS |
| AATAGTGCCTTCCCATCAGT+AGG | 0.663965 | 2.2:-1992723 | None:intergenic |
| CTAGATTAGAGATCTTGAGG+AGG | 0.665009 | 2.2:+1997867 | MS.gene36325:intron |
| CCTTGAAAAGGAGAGACAGA+GGG | 0.668736 | 2.2:+1999354 | MS.gene36325:CDS |
| AGGGCAGCCTCAAAAGAACT+GGG | 0.674272 | 2.2:-2000300 | None:intergenic |
| CTTTATGGGGAACAAAGGTG+AGG | 0.688445 | 2.2:+1992761 | MS.gene36325:CDS |
| ACACAAGCAAGAGTTGCAGG+AGG | 0.689995 | 2.2:+1999480 | MS.gene36325:CDS |
| ATAGCTGGAGGAACTTCGTG+CGG | 0.700493 | 2.2:+2002000 | MS.gene36325:intron |
| GTAGGTTTATGCTCTCACCA+AGG | 0.709012 | 2.2:+1995885 | MS.gene36325:intron |
| GCAGGAGGCATTGATACACA+GGG | 0.712015 | 2.2:+1999495 | MS.gene36325:CDS |
| AATCAGAGCTAGAAGCACTG+AGG | 0.744027 | 2.2:+2001234 | MS.gene36325:CDS |
| CTGCAGTGTGAAAAGCTGCG+TGG | 0.758745 | 2.2:+2001185 | MS.gene36325:intron |
| CATGCTCTGTAGAGACATCG+AGG | 0.760446 | 2.2:+1998632 | MS.gene36325:CDS |
| AGAAGAGAGGATACACACAG+AGG | 0.767600 | 2.2:+1993313 | MS.gene36325:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.2 | gene | 1992208 | 2002198 | 1992208 | ID=MS.gene36325 |
| chr2.2 | mRNA | 1992208 | 2002198 | 1992208 | ID=MS.gene36325.t1;Parent=MS.gene36325 |
| chr2.2 | exon | 1992208 | 1992364 | 1992208 | ID=MS.gene36325.t1.exon1;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1992208 | 1992364 | 1992208 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1992706 | 1993721 | 1992706 | ID=MS.gene36325.t1.exon2;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1992706 | 1993721 | 1992706 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1994730 | 1994801 | 1994730 | ID=MS.gene36325.t1.exon3;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1994730 | 1994801 | 1994730 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1995415 | 1995489 | 1995415 | ID=MS.gene36325.t1.exon4;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1995415 | 1995489 | 1995415 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1995889 | 1996003 | 1995889 | ID=MS.gene36325.t1.exon5;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1995889 | 1996003 | 1995889 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1997711 | 1997772 | 1997711 | ID=MS.gene36325.t1.exon6;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1997711 | 1997772 | 1997711 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1997871 | 1997918 | 1997871 | ID=MS.gene36325.t1.exon7;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1997871 | 1997918 | 1997871 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1998242 | 1998526 | 1998242 | ID=MS.gene36325.t1.exon8;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1998242 | 1998526 | 1998242 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1998615 | 1998674 | 1998615 | ID=MS.gene36325.t1.exon9;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1998615 | 1998674 | 1998615 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1998809 | 1998892 | 1998809 | ID=MS.gene36325.t1.exon10;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1998809 | 1998892 | 1998809 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1998984 | 1999049 | 1998984 | ID=MS.gene36325.t1.exon11;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1998984 | 1999049 | 1998984 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1999136 | 1999234 | 1999136 | ID=MS.gene36325.t1.exon12;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1999136 | 1999234 | 1999136 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1999313 | 1999531 | 1999313 | ID=MS.gene36325.t1.exon13;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1999313 | 1999531 | 1999313 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 1999948 | 2000062 | 1999948 | ID=MS.gene36325.t1.exon14;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 1999948 | 2000062 | 1999948 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 2000145 | 2000365 | 2000145 | ID=MS.gene36325.t1.exon15;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 2000145 | 2000365 | 2000145 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 2000890 | 2000949 | 2000890 | ID=MS.gene36325.t1.exon16;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 2000890 | 2000949 | 2000890 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 2001191 | 2001304 | 2001191 | ID=MS.gene36325.t1.exon17;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 2001191 | 2001304 | 2001191 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 2002004 | 2002078 | 2002004 | ID=MS.gene36325.t1.exon18;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 2002004 | 2002078 | 2002004 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| chr2.2 | exon | 2002172 | 2002198 | 2002172 | ID=MS.gene36325.t1.exon19;Parent=MS.gene36325.t1 |
| chr2.2 | CDS | 2002172 | 2002198 | 2002172 | ID=cds.MS.gene36325.t1;Parent=MS.gene36325.t1 |
| Gene Sequence |
| Protein sequence |
