Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36524.t1 | XP_024637036.1 | 92.2 | 604 | 35 | 2 | 1 | 592 | 1 | 604 | 0.00E+00 | 1101.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36524.t1 | Q6AVI0 | 32.4 | 534 | 337 | 9 | 33 | 546 | 173 | 702 | 6.9e-78 | 293.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36524.t1 | A0A396IDQ4 | 92.2 | 604 | 35 | 2 | 1 | 592 | 1 | 604 | 0.0e+00 | 1101.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049397 | MS.gene36524 | 0.833866 | 4.17E-56 | -1.69E-46 |
| MS.gene04985 | MS.gene36524 | 0.817422 | 3.32E-52 | -1.69E-46 |
| MS.gene049989 | MS.gene36524 | 0.885313 | 9.05E-72 | -1.69E-46 |
| MS.gene050297 | MS.gene36524 | 0.85799 | 1.12E-62 | -1.69E-46 |
| MS.gene050648 | MS.gene36524 | 0.816622 | 5.03E-52 | -1.69E-46 |
| MS.gene051094 | MS.gene36524 | 0.826831 | 2.19E-54 | -1.69E-46 |
| MS.gene051629 | MS.gene36524 | 0.869246 | 3.57E-66 | -1.69E-46 |
| MS.gene052367 | MS.gene36524 | 0.854853 | 9.33E-62 | -1.69E-46 |
| MS.gene053416 | MS.gene36524 | 0.851043 | 1.15E-60 | -1.69E-46 |
| MS.gene053417 | MS.gene36524 | 0.849735 | 2.67E-60 | -1.69E-46 |
| MS.gene05369 | MS.gene36524 | 0.806195 | 9.26E-50 | -1.69E-46 |
| MS.gene053929 | MS.gene36524 | 0.813438 | 2.56E-51 | -1.69E-46 |
| MS.gene055411 | MS.gene36524 | 0.825729 | 4.00E-54 | -1.69E-46 |
| MS.gene055781 | MS.gene36524 | 0.810087 | 1.37E-50 | -1.69E-46 |
| MS.gene055957 | MS.gene36524 | 0.826619 | 2.46E-54 | -1.69E-46 |
| MS.gene056041 | MS.gene36524 | 0.832802 | 7.68E-56 | -1.69E-46 |
| MS.gene056228 | MS.gene36524 | 0.80081 | 1.21E-48 | -1.69E-46 |
| MS.gene056526 | MS.gene36524 | 0.828862 | 7.10E-55 | -1.69E-46 |
| MS.gene058196 | MS.gene36524 | 0.832831 | 7.55E-56 | -1.69E-46 |
| MS.gene058197 | MS.gene36524 | 0.842906 | 1.94E-58 | -1.69E-46 |
| MS.gene058198 | MS.gene36524 | 0.84968 | 2.77E-60 | -1.69E-46 |
| MS.gene058827 | MS.gene36524 | 0.825969 | 3.51E-54 | -1.69E-46 |
| MS.gene059300 | MS.gene36524 | 0.863074 | 3.23E-64 | -1.69E-46 |
| MS.gene060473 | MS.gene36524 | 0.859105 | 5.21E-63 | -1.69E-46 |
| MS.gene060565 | MS.gene36524 | 0.86537 | 6.20E-65 | -1.69E-46 |
| MS.gene06057 | MS.gene36524 | 0.847898 | 8.64E-60 | -1.69E-46 |
| MS.gene061099 | MS.gene36524 | 0.808917 | 2.45E-50 | -1.69E-46 |
| MS.gene061260 | MS.gene36524 | 0.855995 | 4.34E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene36524.t1 | AT3G42170 | 30.280 | 535 | 322 | 9 | 33 | 546 | 148 | 652 | 4.66e-78 | 260 |
| MS.gene36524.t1 | AT3G42170 | 30.280 | 535 | 322 | 9 | 33 | 546 | 170 | 674 | 5.92e-78 | 261 |
Find 79 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAGGAGGTATAGCAATATT+TGG | 0.187929 | 4.1:-17861612 | None:intergenic |
| TGAGCAAGTTTGAGAAATAT+TGG | 0.282910 | 4.1:+17862512 | MS.gene36524:CDS |
| GGCTTATTGTTATTCAAAAC+TGG | 0.302168 | 4.1:+17862600 | MS.gene36524:CDS |
| AAAGATAAAGATATTCTATT+AGG | 0.313785 | 4.1:-17861711 | None:intergenic |
| CAACAGCTTGTTACCAAAAC+TGG | 0.316112 | 4.1:+17862922 | MS.gene36524:CDS |
| TTACTTAGATGAGTCAGTTT+TGG | 0.319382 | 4.1:+17862963 | MS.gene36524:CDS |
| ATGTTGGCAGTTTCACAAAA+AGG | 0.324708 | 4.1:-17862364 | None:intergenic |
| ATTTCCGGATCTATCAATAT+TGG | 0.329671 | 4.1:+17863044 | MS.gene36524:CDS |
| AAGTTGAGACTTTCCAGTTT+TGG | 0.333287 | 4.1:-17862935 | None:intergenic |
| GAGTAATAATGATCGATTTC+CGG | 0.338529 | 4.1:+17863029 | MS.gene36524:CDS |
| TCAAATTGATTCACGCTTTG+TGG | 0.339742 | 4.1:+17861500 | MS.gene36524:CDS |
| TAAGCCTCGATAACATTTCT+AGG | 0.352970 | 4.1:-17861630 | None:intergenic |
| TGAGGCATTCAAAGAGTAGA+AGG | 0.355821 | 4.1:+17862119 | MS.gene36524:CDS |
| ATGCTATTTGAGAAGTATTC+TGG | 0.356538 | 4.1:+17862673 | MS.gene36524:CDS |
| ATGTGTTCTAGTTGATAGTT+TGG | 0.358328 | 4.1:+17862447 | MS.gene36524:CDS |
| AGATGAAGATATAAAGAAAA+TGG | 0.366301 | 4.1:+17862477 | MS.gene36524:CDS |
| GGTTGAGTTGTTGAATGATT+GGG | 0.368263 | 4.1:+17861874 | MS.gene36524:CDS |
| ATTTAAGGAGTGCGTTGAAC+AGG | 0.385664 | 4.1:+17862147 | MS.gene36524:CDS |
| GTTAATTGTTGTTTAAGCTT+AGG | 0.414274 | 4.1:-17861681 | None:intergenic |
| TATAGTGTCGTTCTTGCATT+GGG | 0.424715 | 4.1:+17862541 | MS.gene36524:CDS |
| GAGCAAGCTTCTAATGACTT+TGG | 0.429442 | 4.1:+17863446 | MS.gene36524:CDS |
| GAGCAAGTTTGAGAAATATT+GGG | 0.431072 | 4.1:+17862513 | MS.gene36524:CDS |
| GTAATGGCATGCTAGAAGAT+TGG | 0.432053 | 4.1:-17862744 | None:intergenic |
| GGTTGGTGGTGTTGATAGTT+CGG | 0.434477 | 4.1:+17862168 | MS.gene36524:CDS |
| TCTGGCAACAACACTTCTGC+TGG | 0.444439 | 4.1:+17862691 | MS.gene36524:CDS |
| GTCTCCGATGTCTCACGAAC+AGG | 0.445076 | 4.1:+17861326 | None:intergenic |
| TGGTTGAGTTGTTGAATGAT+TGG | 0.445907 | 4.1:+17861873 | MS.gene36524:CDS |
| TTGCTGTAGCTTCCTTTCAC+AGG | 0.452697 | 4.1:-17862632 | None:intergenic |
| TAGTTCGGTTCGCTTACATT+TGG | 0.454929 | 4.1:+17862183 | MS.gene36524:CDS |
| ATCAGAAGCTACGGTGGCAA+TGG | 0.457714 | 4.1:-17863088 | None:intergenic |
| TGTGTTCTAGTTGATAGTTT+GGG | 0.462965 | 4.1:+17862448 | MS.gene36524:CDS |
| TAGTTATGAATTATGTCCTT+CGG | 0.485944 | 4.1:+17862297 | MS.gene36524:CDS |
| TCAGAAGCTACGGTGGCAAT+GGG | 0.504779 | 4.1:-17863087 | None:intergenic |
| TGACAAATCTCACCACTAGT+AGG | 0.517300 | 4.1:-17861845 | None:intergenic |
| CAGGCCAATATTGATAGATC+CGG | 0.521638 | 4.1:-17863048 | None:intergenic |
| GAATTGGAAGTTAAATAGTA+AGG | 0.521677 | 4.1:+17861796 | MS.gene36524:intron |
| CAAAATGGGTTGTTATGTGA+TGG | 0.523049 | 4.1:+17861986 | MS.gene36524:CDS |
| CTGGCAACAACACTTCTGCT+GGG | 0.527197 | 4.1:+17862692 | MS.gene36524:CDS |
| CTAGAATTTGTACTCGCAGT+TGG | 0.528677 | 4.1:+17863181 | MS.gene36524:CDS |
| AAATTAAAGTCTTTATCTCA+TGG | 0.532845 | 4.1:+17862772 | MS.gene36524:CDS |
| TTGAAAGAGCTCTTAAATAC+CGG | 0.537247 | 4.1:+17862242 | MS.gene36524:CDS |
| TGGTGAGATTTGTCAGAGAA+TGG | 0.537446 | 4.1:+17861853 | MS.gene36524:CDS |
| ATTCTAGCTTCCACATTCAT+CGG | 0.540479 | 4.1:-17863165 | None:intergenic |
| GTATAGTGTCGTTCTTGCAT+TGG | 0.543770 | 4.1:+17862540 | MS.gene36524:CDS |
| TAAAGATATTCTATTAGGAA+TGG | 0.545385 | 4.1:-17861706 | None:intergenic |
| CAAATCTCACCACTAGTAGG+AGG | 0.556810 | 4.1:-17861842 | None:intergenic |
| TGGGAGCGGTTCTTGACCCA+CGG | 0.559614 | 4.1:+17862560 | MS.gene36524:CDS |
| GTTGAGTTGTTGAATGATTG+GGG | 0.563887 | 4.1:+17861875 | MS.gene36524:CDS |
| CTTGTTTACCCTCCTACTAG+TGG | 0.565610 | 4.1:+17861833 | MS.gene36524:CDS |
| TATGTCCTTCGGCAGAAGAG+TGG | 0.576340 | 4.1:+17862308 | MS.gene36524:CDS |
| TGTCGTTCTTGCATTGGGAG+CGG | 0.576416 | 4.1:+17862546 | MS.gene36524:CDS |
| ATATAAAGAAAATGGCTGAA+AGG | 0.580537 | 4.1:+17862485 | MS.gene36524:CDS |
| AAGGAGTGCGTTGAACAGGT+TGG | 0.580671 | 4.1:+17862151 | MS.gene36524:CDS |
| TGTTGTGCTATTAATCATGT+TGG | 0.585834 | 4.1:-17862380 | None:intergenic |
| AAATTCAAAATCAGAAGCTA+CGG | 0.586576 | 4.1:-17863097 | None:intergenic |
| TGGATGCATCAACCTGTGAA+AGG | 0.589753 | 4.1:+17862620 | MS.gene36524:CDS |
| AACTATCAACTAGAACACAT+TGG | 0.591548 | 4.1:-17862444 | None:intergenic |
| AAGGTTGAAAACTTCATCCG+TGG | 0.593618 | 4.1:-17862577 | None:intergenic |
| TGGCAACAACACTTCTGCTG+GGG | 0.603497 | 4.1:+17862693 | MS.gene36524:CDS |
| TCATATGTTGCCGATGAATG+TGG | 0.604745 | 4.1:+17863155 | MS.gene36524:CDS |
| GAAAGGGCAAATCATGTGCA+AGG | 0.607899 | 4.1:-17861542 | None:intergenic |
| AAATGGATGTATTACAATGG+TGG | 0.610990 | 4.1:+17863004 | MS.gene36524:CDS |
| TTCAAAATCAGAAGCTACGG+TGG | 0.614303 | 4.1:-17863094 | None:intergenic |
| GGGAACACTTAACAAGTCGC+AGG | 0.614339 | 4.1:-17863067 | None:intergenic |
| AATACCTGTTCGTGAGACAT+CGG | 0.616720 | 4.1:-17861330 | None:intergenic |
| GAGTGCGTTGAACAGGTTGG+TGG | 0.617258 | 4.1:+17862154 | MS.gene36524:CDS |
| AATATTTGGATTTAAGAACT+CGG | 0.621104 | 4.1:-17861598 | None:intergenic |
| GAAAACTTTCGAACGCACAC+CGG | 0.621210 | 4.1:-17862261 | None:intergenic |
| GATGGAGAAGACGACGACGA+TGG | 0.621975 | 4.1:+17863380 | MS.gene36524:intron |
| GAGAGAGTATCATGTTTGTG+AGG | 0.628223 | 4.1:+17862101 | MS.gene36524:CDS |
| AAAGATAGAATTTGATAACG+AGG | 0.635017 | 4.1:+17861473 | MS.gene36524:CDS |
| AGGTTGAAAACTTCATCCGT+GGG | 0.636207 | 4.1:-17862576 | None:intergenic |
| ACCTCCTAGAAATGTTATCG+AGG | 0.637447 | 4.1:+17861626 | MS.gene36524:CDS |
| GAGGCATTCAAAGAGTAGAA+GGG | 0.641403 | 4.1:+17862120 | MS.gene36524:CDS |
| TAGTAGGAGGGTAAACAAGA+CGG | 0.651039 | 4.1:-17861829 | None:intergenic |
| AAATCTCACCACTAGTAGGA+GGG | 0.654396 | 4.1:-17861841 | None:intergenic |
| GCGTTAAAACTAGTTAGCTG+TGG | 0.661366 | 4.1:+17862064 | MS.gene36524:CDS |
| GCCTCGATAACATTTCTAGG+AGG | 0.669214 | 4.1:-17861627 | None:intergenic |
| CAGAAATGGATGTATTACAA+TGG | 0.706453 | 4.1:+17863001 | MS.gene36524:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAAGTTTTTATATATTTTT+TGG | + | chr4.1:17862805-17862824 | MS.gene36524:intron | 10.0% |
| !! | AAAGATAAAGATATTCTATT+AGG | - | chr4.1:17861714-17861733 | None:intergenic | 15.0% |
| !! | TATAAAAACTTACATCAAAT+AGG | - | chr4.1:17862798-17862817 | None:intergenic | 15.0% |
| !! | AAATTAAAGTCTTTATCTCA+TGG | + | chr4.1:17862772-17862791 | MS.gene36524:CDS | 20.0% |
| !! | AACTTGTAAAAAATACAAGT+TGG | - | chr4.1:17862416-17862435 | None:intergenic | 20.0% |
| !! | AATATTTGGATTTAAGAACT+CGG | - | chr4.1:17861601-17861620 | None:intergenic | 20.0% |
| !! | AGATGAAGATATAAAGAAAA+TGG | + | chr4.1:17862477-17862496 | MS.gene36524:CDS | 20.0% |
| !! | TAAAGATATTCTATTAGGAA+TGG | - | chr4.1:17861709-17861728 | None:intergenic | 20.0% |
| !! | TTAATAACTAAATTTACCCA+TGG | - | chr4.1:17863339-17863358 | None:intergenic | 20.0% |
| !!! | ACTTGTATTTTTTACAAGTT+TGG | + | chr4.1:17862416-17862435 | MS.gene36524:CDS | 20.0% |
| !!! | GACTTTAATTTCTTTTGTAA+TGG | - | chr4.1:17862763-17862782 | None:intergenic | 20.0% |
| !!! | TATCTTTATCTTTTGATTTG+TGG | + | chr4.1:17861721-17861740 | MS.gene36524:CDS | 20.0% |
| ! | AAATTCAAAATCAGAAGCTA+CGG | - | chr4.1:17863100-17863119 | None:intergenic | 25.0% |
| ! | AATCGACAATGATGAAAAAA+TGG | + | chr4.1:17863424-17863443 | MS.gene36524:CDS | 25.0% |
| ! | ATATAAAGAAAATGGCTGAA+AGG | + | chr4.1:17862485-17862504 | MS.gene36524:CDS | 25.0% |
| ! | ATTACATTTCACAAGTGAAA+AGG | - | chr4.1:17862882-17862901 | None:intergenic | 25.0% |
| ! | CTTCAATTATGATATGTAGA+TGG | + | chr4.1:17863362-17863381 | MS.gene36524:intron | 25.0% |
| ! | GAATTGGAAGTTAAATAGTA+AGG | + | chr4.1:17861796-17861815 | MS.gene36524:intron | 25.0% |
| ! | TAGTTATGAATTATGTCCTT+CGG | + | chr4.1:17862297-17862316 | MS.gene36524:CDS | 25.0% |
| ! | TTTCACTTGTGAAATGTAAT+AGG | + | chr4.1:17862882-17862901 | MS.gene36524:intron | 25.0% |
| !! | AAAAAATACAAGTTGGAAGT+AGG | - | chr4.1:17862409-17862428 | None:intergenic | 25.0% |
| !! | TCTGATTTTGAATTTTGCAT+GGG | + | chr4.1:17863105-17863124 | MS.gene36524:CDS | 25.0% |
| !! | TTCTGATTTTGAATTTTGCA+TGG | + | chr4.1:17863104-17863123 | MS.gene36524:CDS | 25.0% |
| !! | TTGTACAATTTTGTTAGTGA+GGG | + | chr4.1:17863204-17863223 | MS.gene36524:CDS | 25.0% |
| !! | TTTTGAATAACAATAAGCCA+AGG | - | chr4.1:17862599-17862618 | None:intergenic | 25.0% |
| !!! | AAAGATAGAATTTGATAACG+AGG | + | chr4.1:17861473-17861492 | MS.gene36524:CDS | 25.0% |
| !!! | GTTAATTGTTGTTTAAGCTT+AGG | - | chr4.1:17861684-17861703 | None:intergenic | 25.0% |
| !!! | TGTATTGTTTTGATAACCAT+GGG | + | chr4.1:17863320-17863339 | MS.gene36524:intron | 25.0% |
| !!! | TTGTATTGTTTTGATAACCA+TGG | + | chr4.1:17863319-17863338 | MS.gene36524:intron | 25.0% |
| AAATGGATGTATTACAATGG+TGG | + | chr4.1:17863004-17863023 | MS.gene36524:CDS | 30.0% | |
| AACTATCAACTAGAACACAT+TGG | - | chr4.1:17862447-17862466 | None:intergenic | 30.0% | |
| ATTTCCGGATCTATCAATAT+TGG | + | chr4.1:17863044-17863063 | MS.gene36524:CDS | 30.0% | |
| CAGAAATGGATGTATTACAA+TGG | + | chr4.1:17863001-17863020 | MS.gene36524:CDS | 30.0% | |
| GAGCAAGTTTGAGAAATATT+GGG | + | chr4.1:17862513-17862532 | MS.gene36524:CDS | 30.0% | |
| GAGTAGAAGGGAAAAATTTA+AGG | + | chr4.1:17862132-17862151 | MS.gene36524:CDS | 30.0% | |
| TGAGCAAGTTTGAGAAATAT+TGG | + | chr4.1:17862512-17862531 | MS.gene36524:CDS | 30.0% | |
| TTGAAAGAGCTCTTAAATAC+CGG | + | chr4.1:17862242-17862261 | MS.gene36524:CDS | 30.0% | |
| ! | GAGTAATAATGATCGATTTC+CGG | + | chr4.1:17863029-17863048 | MS.gene36524:CDS | 30.0% |
| ! | GGCTTATTGTTATTCAAAAC+TGG | + | chr4.1:17862600-17862619 | MS.gene36524:CDS | 30.0% |
| ! | GTTGTACAATTTTGTTAGTG+AGG | + | chr4.1:17863203-17863222 | MS.gene36524:CDS | 30.0% |
| ! | TGTTGTGCTATTAATCATGT+TGG | - | chr4.1:17862383-17862402 | None:intergenic | 30.0% |
| ! | TTACTTAGATGAGTCAGTTT+TGG | + | chr4.1:17862963-17862982 | MS.gene36524:CDS | 30.0% |
| ! | TTGAATTTGTTTAACCTCGT+TGG | + | chr4.1:17862853-17862872 | MS.gene36524:intron | 30.0% |
| ! | TTTTCGTTGTTATGCAGAAA+TGG | + | chr4.1:17862987-17863006 | MS.gene36524:CDS | 30.0% |
| !! | AAGAACTTTTAAGGAGAATC+AGG | + | chr4.1:17862720-17862739 | MS.gene36524:CDS | 30.0% |
| !! | ATGCTATTTGAGAAGTATTC+TGG | + | chr4.1:17862673-17862692 | MS.gene36524:CDS | 30.0% |
| !! | ATGTGTTCTAGTTGATAGTT+TGG | + | chr4.1:17862447-17862466 | MS.gene36524:CDS | 30.0% |
| !! | TGTGTTCTAGTTGATAGTTT+GGG | + | chr4.1:17862448-17862467 | MS.gene36524:CDS | 30.0% |
| ACAATGCTGAAATGTAACCT+AGG | + | chr4.1:17861428-17861447 | MS.gene36524:intron | 35.0% | |
| AGACATTTCTTCGAATACCT+AGG | - | chr4.1:17861448-17861467 | None:intergenic | 35.0% | |
| ATGTTGGCAGTTTCACAAAA+AGG | - | chr4.1:17862367-17862386 | None:intergenic | 35.0% | |
| TAAGCCTCGATAACATTTCT+AGG | - | chr4.1:17861633-17861652 | None:intergenic | 35.0% | |
| TCGAGCTCGAAAAAATGAAA+GGG | - | chr4.1:17861561-17861580 | None:intergenic | 35.0% | |
| ! | AAGTTGAGACTTTCCAGTTT+TGG | - | chr4.1:17862938-17862957 | None:intergenic | 35.0% |
| ! | ACCCATTTTGCAAAACAAGT+TGG | - | chr4.1:17861976-17861995 | None:intergenic | 35.0% |
| ! | CTAGGAGGTATAGCAATATT+TGG | - | chr4.1:17861615-17861634 | None:intergenic | 35.0% |
| ! | GGTTGAGTTGTTGAATGATT+GGG | + | chr4.1:17861874-17861893 | MS.gene36524:CDS | 35.0% |
| ! | GTTGAGTTGTTGAATGATTG+GGG | + | chr4.1:17861875-17861894 | MS.gene36524:CDS | 35.0% |
| ! | TATAGTGTCGTTCTTGCATT+GGG | + | chr4.1:17862541-17862560 | MS.gene36524:CDS | 35.0% |
| ! | TCAAATTGATTCACGCTTTG+TGG | + | chr4.1:17861500-17861519 | MS.gene36524:CDS | 35.0% |
| ! | TGGGGTTCAAAGAACTTTTA+AGG | + | chr4.1:17862711-17862730 | MS.gene36524:CDS | 35.0% |
| ! | TGGTTGAGTTGTTGAATGAT+TGG | + | chr4.1:17861873-17861892 | MS.gene36524:CDS | 35.0% |
| !! | ATTCTAGCTTCCACATTCAT+CGG | - | chr4.1:17863168-17863187 | None:intergenic | 35.0% |
| !! | CAAAATGGGTTGTTATGTGA+TGG | + | chr4.1:17861986-17862005 | MS.gene36524:CDS | 35.0% |
| !! | TTTTGGTAACAAGCTGTTGA+TGG | - | chr4.1:17862921-17862940 | None:intergenic | 35.0% |
| !!! | AGCCAACTTGTTTTGCAAAA+TGG | + | chr4.1:17861971-17861990 | MS.gene36524:CDS | 35.0% |
| !!! | GCCAACTTGTTTTGCAAAAT+GGG | + | chr4.1:17861972-17861991 | MS.gene36524:CDS | 35.0% |
| !!! | TTTCATTTTTTCGAGCTCGA+GGG | + | chr4.1:17861561-17861580 | MS.gene36524:CDS | 35.0% |
| AAATCTCACCACTAGTAGGA+GGG | - | chr4.1:17861844-17861863 | None:intergenic | 40.0% | |
| AAGGTTGAAAACTTCATCCG+TGG | - | chr4.1:17862580-17862599 | None:intergenic | 40.0% | |
| AAGTGAAAAGGAAACCAACG+AGG | - | chr4.1:17862870-17862889 | None:intergenic | 40.0% | |
| ACCTCCTAGAAATGTTATCG+AGG | + | chr4.1:17861626-17861645 | MS.gene36524:CDS | 40.0% | |
| AGGTTGAAAACTTCATCCGT+GGG | - | chr4.1:17862579-17862598 | None:intergenic | 40.0% | |
| ATTCGCGTCAACAAAATGAG+CGG | - | chr4.1:17861780-17861799 | None:intergenic | 40.0% | |
| CAGGCCAATATTGATAGATC+CGG | - | chr4.1:17863051-17863070 | None:intergenic | 40.0% | |
| CTAGAATTTGTACTCGCAGT+TGG | + | chr4.1:17863181-17863200 | MS.gene36524:CDS | 40.0% | |
| CTCGAGCTCGAAAAAATGAA+AGG | - | chr4.1:17861562-17861581 | None:intergenic | 40.0% | |
| GAGCAAGCTTCTAATGACTT+TGG | + | chr4.1:17863446-17863465 | MS.gene36524:CDS | 40.0% | |
| GCGTTAAAACTAGTTAGCTG+TGG | + | chr4.1:17862064-17862083 | MS.gene36524:CDS | 40.0% | |
| GTAATGGCATGCTAGAAGAT+TGG | - | chr4.1:17862747-17862766 | None:intergenic | 40.0% | |
| TAGTAGGAGGGTAAACAAGA+CGG | - | chr4.1:17861832-17861851 | None:intergenic | 40.0% | |
| TCATATGTTGCCGATGAATG+TGG | + | chr4.1:17863155-17863174 | MS.gene36524:CDS | 40.0% | |
| TGACAAATCTCACCACTAGT+AGG | - | chr4.1:17861848-17861867 | None:intergenic | 40.0% | |
| TGGTGAGATTTGTCAGAGAA+TGG | + | chr4.1:17861853-17861872 | MS.gene36524:CDS | 40.0% | |
| TTCAAAATCAGAAGCTACGG+TGG | - | chr4.1:17863097-17863116 | None:intergenic | 40.0% | |
| ! | ACGGATGAAGTTTTCAACCT+TGG | + | chr4.1:17862579-17862598 | MS.gene36524:CDS | 40.0% |
| ! | ATTTAAGGAGTGCGTTGAAC+AGG | + | chr4.1:17862147-17862166 | MS.gene36524:CDS | 40.0% |
| ! | CTCATTTTGTTGACGCGAAT+TGG | + | chr4.1:17861780-17861799 | MS.gene36524:intron | 40.0% |
| ! | GAGGCATTCAAAGAGTAGAA+GGG | + | chr4.1:17862120-17862139 | MS.gene36524:CDS | 40.0% |
| ! | GTATAGTGTCGTTCTTGCAT+TGG | + | chr4.1:17862540-17862559 | MS.gene36524:CDS | 40.0% |
| ! | TAGTTCGGTTCGCTTACATT+TGG | + | chr4.1:17862183-17862202 | MS.gene36524:CDS | 40.0% |
| ! | TGAGGCATTCAAAGAGTAGA+AGG | + | chr4.1:17862119-17862138 | MS.gene36524:CDS | 40.0% |
| !! | CAACAGCTTGTTACCAAAAC+TGG | + | chr4.1:17862922-17862941 | MS.gene36524:CDS | 40.0% |
| !! | GAGAGAGTATCATGTTTGTG+AGG | + | chr4.1:17862101-17862120 | MS.gene36524:CDS | 40.0% |
| !!! | CTTTCATTTTTTCGAGCTCG+AGG | + | chr4.1:17861560-17861579 | MS.gene36524:CDS | 40.0% |
| CAAATCTCACCACTAGTAGG+AGG | - | chr4.1:17861845-17861864 | None:intergenic | 45.0% | |
| CTTGTTTACCCTCCTACTAG+TGG | + | chr4.1:17861833-17861852 | MS.gene36524:CDS | 45.0% | |
| GAAAACTTTCGAACGCACAC+CGG | - | chr4.1:17862264-17862283 | None:intergenic | 45.0% | |
| GAAAGGGCAAATCATGTGCA+AGG | - | chr4.1:17861545-17861564 | None:intergenic | 45.0% | |
| TGGATGCATCAACCTGTGAA+AGG | + | chr4.1:17862620-17862639 | MS.gene36524:CDS | 45.0% | |
| TTGCTGTAGCTTCCTTTCAC+AGG | - | chr4.1:17862635-17862654 | None:intergenic | 45.0% | |
| ! | GCCTCGATAACATTTCTAGG+AGG | - | chr4.1:17861630-17861649 | None:intergenic | 45.0% |
| !! | GGTTGGTGGTGTTGATAGTT+CGG | + | chr4.1:17862168-17862187 | MS.gene36524:CDS | 45.0% |
| ATCAGAAGCTACGGTGGCAA+TGG | - | chr4.1:17863091-17863110 | None:intergenic | 50.0% | |
| CTGGCAACAACACTTCTGCT+GGG | + | chr4.1:17862692-17862711 | MS.gene36524:CDS | 50.0% | |
| GGGAACACTTAACAAGTCGC+AGG | - | chr4.1:17863070-17863089 | None:intergenic | 50.0% | |
| GTGTGTGTGTGTGTGTGTGT+TGG | + | chr4.1:17863251-17863270 | MS.gene36524:intron | 50.0% | |
| TATGTCCTTCGGCAGAAGAG+TGG | + | chr4.1:17862308-17862327 | MS.gene36524:CDS | 50.0% | |
| TCAGAAGCTACGGTGGCAAT+GGG | - | chr4.1:17863090-17863109 | None:intergenic | 50.0% | |
| TCTGGCAACAACACTTCTGC+TGG | + | chr4.1:17862691-17862710 | MS.gene36524:CDS | 50.0% | |
| TGGCAACAACACTTCTGCTG+GGG | + | chr4.1:17862693-17862712 | MS.gene36524:CDS | 50.0% | |
| TGTCGTTCTTGCATTGGGAG+CGG | + | chr4.1:17862546-17862565 | MS.gene36524:CDS | 50.0% | |
| ! | AAGGAGTGCGTTGAACAGGT+TGG | + | chr4.1:17862151-17862170 | MS.gene36524:CDS | 50.0% |
| ! | CTTTTCCACTCTTCTGCCGA+AGG | - | chr4.1:17862316-17862335 | None:intergenic | 50.0% |
| !! | TTTTCGAGCTCGAGGGAATG+AGG | + | chr4.1:17861568-17861587 | MS.gene36524:CDS | 50.0% |
| GATGGAGAAGACGACGACGA+TGG | + | chr4.1:17863380-17863399 | MS.gene36524:intron | 55.0% | |
| ! | GAGTGCGTTGAACAGGTTGG+TGG | + | chr4.1:17862154-17862173 | MS.gene36524:CDS | 55.0% |
| TGGGAGCGGTTCTTGACCCA+CGG | + | chr4.1:17862560-17862579 | MS.gene36524:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 17861333 | 17863502 | 17861333 | ID=MS.gene36524 |
| chr4.1 | mRNA | 17861333 | 17863502 | 17861333 | ID=MS.gene36524.t1;Parent=MS.gene36524 |
| chr4.1 | exon | 17861333 | 17861347 | 17861333 | ID=MS.gene36524.t1.exon1;Parent=MS.gene36524.t1 |
| chr4.1 | CDS | 17861333 | 17861347 | 17861333 | ID=cds.MS.gene36524.t1;Parent=MS.gene36524.t1 |
| chr4.1 | exon | 17861450 | 17861770 | 17861450 | ID=MS.gene36524.t1.exon2;Parent=MS.gene36524.t1 |
| chr4.1 | CDS | 17861450 | 17861770 | 17861450 | ID=cds.MS.gene36524.t1;Parent=MS.gene36524.t1 |
| chr4.1 | exon | 17861806 | 17862804 | 17861806 | ID=MS.gene36524.t1.exon3;Parent=MS.gene36524.t1 |
| chr4.1 | CDS | 17861806 | 17862804 | 17861806 | ID=cds.MS.gene36524.t1;Parent=MS.gene36524.t1 |
| chr4.1 | exon | 17862904 | 17863225 | 17862904 | ID=MS.gene36524.t1.exon4;Parent=MS.gene36524.t1 |
| chr4.1 | CDS | 17862904 | 17863225 | 17862904 | ID=cds.MS.gene36524.t1;Parent=MS.gene36524.t1 |
| chr4.1 | exon | 17863381 | 17863502 | 17863381 | ID=MS.gene36524.t1.exon5;Parent=MS.gene36524.t1 |
| chr4.1 | CDS | 17863381 | 17863502 | 17863381 | ID=cds.MS.gene36524.t1;Parent=MS.gene36524.t1 |
| Gene Sequence |
| Protein sequence |
