Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055781.t1 | KEH39173.1 | 92.9 | 396 | 26 | 1 | 1 | 396 | 1 | 394 | 6.60E-185 | 656.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055781.t1 | Q6DR04 | 45.5 | 365 | 181 | 6 | 1 | 351 | 18 | 378 | 2.2e-72 | 274.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055781.t1 | A0A072VCI4 | 92.9 | 396 | 26 | 1 | 1 | 396 | 1 | 394 | 4.7e-185 | 656.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene055781 | 0.82481 | 6.60E-54 | -1.69E-46 |
| MS.gene050297 | MS.gene055781 | 0.813036 | 3.14E-51 | -1.69E-46 |
| MS.gene050648 | MS.gene055781 | 0.806127 | 9.57E-50 | -1.69E-46 |
| MS.gene051629 | MS.gene055781 | 0.821699 | 3.51E-53 | -1.69E-46 |
| MS.gene055781 | MS.gene058197 | 0.823285 | 1.50E-53 | -1.69E-46 |
| MS.gene055781 | MS.gene058198 | 0.820574 | 6.38E-53 | -1.69E-46 |
| MS.gene055781 | MS.gene059300 | 0.847424 | 1.17E-59 | -1.69E-46 |
| MS.gene055781 | MS.gene06057 | 0.838463 | 2.83E-57 | -1.69E-46 |
| MS.gene055781 | MS.gene061805 | 0.815647 | 8.31E-52 | -1.69E-46 |
| MS.gene055781 | MS.gene063422 | 0.833186 | 6.16E-56 | -1.69E-46 |
| MS.gene055781 | MS.gene064161 | 0.828505 | 8.66E-55 | -1.69E-46 |
| MS.gene055781 | MS.gene066551 | 0.814382 | 1.59E-51 | -1.69E-46 |
| MS.gene055781 | MS.gene066552 | 0.827409 | 1.59E-54 | -1.69E-46 |
| MS.gene055781 | MS.gene067143 | 0.825533 | 4.45E-54 | -1.69E-46 |
| MS.gene055781 | MS.gene067144 | 0.800598 | 1.34E-48 | -1.69E-46 |
| MS.gene055781 | MS.gene068607 | 0.827114 | 1.87E-54 | -1.69E-46 |
| MS.gene055781 | MS.gene069090 | 0.811571 | 6.55E-51 | -1.69E-46 |
| MS.gene055781 | MS.gene069140 | 0.839221 | 1.80E-57 | -1.69E-46 |
| MS.gene055781 | MS.gene070885 | 0.802402 | 5.71E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene072719 | 0.824574 | 7.50E-54 | -1.69E-46 |
| MS.gene055781 | MS.gene072954 | 0.803309 | 3.71E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene072956 | 0.808987 | 2.36E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene073698 | 0.802741 | 4.86E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene08573 | 0.818976 | 1.48E-52 | -1.69E-46 |
| MS.gene055781 | MS.gene08860 | 0.802999 | 4.30E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene09234 | 0.813749 | 2.19E-51 | -1.69E-46 |
| MS.gene055781 | MS.gene09275 | 0.80766 | 4.54E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene21320 | 0.812101 | 5.02E-51 | -1.69E-46 |
| MS.gene055781 | MS.gene23323 | 0.801911 | 7.20E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene24699 | 0.837603 | 4.71E-57 | -1.69E-46 |
| MS.gene055781 | MS.gene24982 | 0.838589 | 2.63E-57 | -1.69E-46 |
| MS.gene055781 | MS.gene26801 | 0.810191 | 1.30E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene27941 | 0.806362 | 8.53E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene28050 | 0.813206 | 2.88E-51 | -1.69E-46 |
| MS.gene055781 | MS.gene30854 | 0.802944 | 4.41E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene33688 | 0.808559 | 2.92E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene35715 | 0.838719 | 2.43E-57 | -1.69E-46 |
| MS.gene055781 | MS.gene36524 | 0.810087 | 1.37E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene40409 | 0.800325 | 1.52E-48 | -1.69E-46 |
| MS.gene055781 | MS.gene47899 | 0.828302 | 9.70E-55 | -1.69E-46 |
| MS.gene055781 | MS.gene50479 | 0.833276 | 5.85E-56 | -1.69E-46 |
| MS.gene055781 | MS.gene51091 | 0.800704 | 1.27E-48 | -1.69E-46 |
| MS.gene055781 | MS.gene55782 | 0.832286 | 1.03E-55 | -1.69E-46 |
| MS.gene055781 | MS.gene56025 | 0.808929 | 2.43E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene57219 | 0.801684 | 8.02E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene57320 | 0.807 | 6.26E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene57380 | 0.803111 | 4.07E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene58772 | 0.819659 | 1.03E-52 | -1.69E-46 |
| MS.gene055781 | MS.gene63853 | 0.819016 | 1.45E-52 | -1.69E-46 |
| MS.gene055781 | MS.gene67223 | 0.827818 | 1.27E-54 | -1.69E-46 |
| MS.gene055781 | MS.gene68611 | 0.810542 | 1.09E-50 | -1.69E-46 |
| MS.gene055781 | MS.gene77531 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene78156 | 0.818973 | 1.48E-52 | -1.69E-46 |
| MS.gene055781 | MS.gene81409 | 0.815376 | 9.54E-52 | -1.69E-46 |
| MS.gene055781 | MS.gene81491 | 0.820078 | 8.29E-53 | -1.69E-46 |
| MS.gene055781 | MS.gene83963 | 0.827722 | 1.34E-54 | -1.69E-46 |
| MS.gene055781 | MS.gene87307 | 0.849403 | 3.31E-60 | -1.69E-46 |
| MS.gene055781 | MS.gene89081 | 0.823074 | 1.68E-53 | -1.69E-46 |
| MS.gene055781 | MS.gene92710 | 0.804993 | 1.65E-49 | -1.69E-46 |
| MS.gene055781 | MS.gene95527 | 0.811971 | 5.36E-51 | -1.69E-46 |
| MS.gene055781 | MS.gene95826 | 0.815591 | 8.55E-52 | -1.69E-46 |
| MS.gene055781 | MS.gene99093 | 0.838324 | 3.08E-57 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055781.t1 | MTR_2g090620 | 94.949 | 396 | 18 | 1 | 1 | 396 | 1 | 394 | 0.0 | 734 |
| MS.gene055781.t1 | MTR_4g078740 | 61.151 | 278 | 102 | 1 | 109 | 386 | 35 | 306 | 1.26e-116 | 342 |
| MS.gene055781.t1 | MTR_2g460800 | 35.593 | 236 | 147 | 3 | 139 | 371 | 326 | 559 | 1.60e-46 | 168 |
| MS.gene055781.t1 | MTR_2g460800 | 36.129 | 155 | 94 | 3 | 139 | 290 | 326 | 478 | 4.82e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene055781.t1 | AT2G20590 | 49.171 | 362 | 159 | 7 | 1 | 351 | 18 | 365 | 1.06e-103 | 313 |
| MS.gene055781.t1 | AT2G20590 | 48.634 | 366 | 168 | 7 | 1 | 351 | 18 | 378 | 5.97e-103 | 311 |
| MS.gene055781.t1 | AT4G28430 | 42.782 | 381 | 187 | 8 | 33 | 386 | 72 | 448 | 2.75e-93 | 288 |
| MS.gene055781.t1 | AT2G20590 | 49.032 | 310 | 138 | 7 | 1 | 295 | 18 | 322 | 7.56e-82 | 254 |
| MS.gene055781.t1 | AT5G58000 | 36.726 | 226 | 141 | 1 | 127 | 350 | 216 | 441 | 4.02e-47 | 168 |
| MS.gene055781.t1 | AT5G58000 | 36.726 | 226 | 141 | 1 | 127 | 350 | 322 | 547 | 9.81e-47 | 169 |
Find 75 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATTGGCGATTCTCATTT+TGG | 0.143148 | 2.1:-10317998 | MS.gene055781:CDS |
| CTTCTACTAGGAGCTGAATT+TGG | 0.262185 | 2.1:-10317607 | MS.gene055781:CDS |
| ATCAAAACTCGAATCTTTAC+AGG | 0.267508 | 2.1:-10317155 | MS.gene055781:intron |
| GTTGGGTTGGTTGAAGAAAT+TGG | 0.280135 | 2.1:-10318966 | MS.gene055781:CDS |
| TCTGAGAGGGGAAGGGGAAG+GGG | 0.284263 | 2.1:+10319157 | None:intergenic |
| AACATTGTGGATTACTTTAA+GGG | 0.298725 | 2.1:+10317718 | None:intergenic |
| GTGTAGCAAGAATAAAGTTT+TGG | 0.298854 | 2.1:+10317407 | None:intergenic |
| CTTGAAGGTTGAGGAAAGTT+AGG | 0.307696 | 2.1:+10318897 | None:intergenic |
| TAGAATTTGAAGAAGAAAAT+GGG | 0.333581 | 2.1:-10318784 | MS.gene055781:CDS |
| ACAAAATCAACCCTTTGGTT+TGG | 0.349573 | 2.1:-10318704 | MS.gene055781:CDS |
| GTAGAATTTGAAGAAGAAAA+TGG | 0.354309 | 2.1:-10318785 | MS.gene055781:intron |
| GGGGTTGATTTAGATCATAT+TGG | 0.354774 | 2.1:-10318764 | MS.gene055781:CDS |
| ACGGTCGATGAGACGGGTCT+TGG | 0.378085 | 2.1:+10319130 | None:intergenic |
| GAAAACAAAGATGGTGTTGT+TGG | 0.391114 | 2.1:-10318984 | MS.gene055781:CDS |
| GGGTTGATTTAGATCATATT+GGG | 0.393926 | 2.1:-10318763 | MS.gene055781:CDS |
| TCAACCCTTTGGTTTGGACT+TGG | 0.396972 | 2.1:-10318698 | MS.gene055781:CDS |
| TGTCTCGGCCTTGTCACAAT+TGG | 0.407918 | 2.1:-10318013 | MS.gene055781:CDS |
| TGGGCAGCTAGTGAGTGATT+TGG | 0.414286 | 2.1:-10318744 | MS.gene055781:CDS |
| TTCTGAGAGGGGAAGGGGAA+GGG | 0.422702 | 2.1:+10319156 | None:intergenic |
| ACTTCATATCGTGGTTTCCT+TGG | 0.435319 | 2.1:+10319020 | None:intergenic |
| ATTACTTTAAGGGTCATTGA+TGG | 0.440294 | 2.1:+10317728 | None:intergenic |
| TTGGCCACTTAATTACAATC+AGG | 0.443528 | 2.1:-10317588 | MS.gene055781:CDS |
| CACTCACAAGAAGAAATTAA+CGG | 0.445955 | 2.1:-10317213 | MS.gene055781:CDS |
| ATGTAACAAAATCAACCCTT+TGG | 0.446627 | 2.1:-10318709 | MS.gene055781:CDS |
| AGATTGTTGGATTGGTTTAA+CGG | 0.447384 | 2.1:+10319202 | None:intergenic |
| GGAAACTCAACTGGCATTAG+TGG | 0.450988 | 2.1:-10316542 | MS.gene055781:CDS |
| GGTGATGGAGATTGTTGGAT+TGG | 0.451311 | 2.1:+10319194 | None:intergenic |
| GAAGGAGATGGTGATGGTGA+TGG | 0.454990 | 2.1:+10319179 | None:intergenic |
| GGGTTTGAAACTATTGTTGT+TGG | 0.463082 | 2.1:-10317252 | MS.gene055781:CDS |
| AGAGGGGAAGGGGAAGGGGA+AGG | 0.465021 | 2.1:+10319161 | None:intergenic |
| GAAGGGGAAGGGGAAGGAGA+TGG | 0.465711 | 2.1:+10319167 | None:intergenic |
| TCAGCTCCTAGTAGAAGAAA+AGG | 0.471363 | 2.1:+10317613 | None:intergenic |
| GATTGGTTTAACGGTGATGA+TGG | 0.471612 | 2.1:+10319211 | None:intergenic |
| CAAAGATGGTGTTGTTGGGT+TGG | 0.477270 | 2.1:-10318979 | MS.gene055781:CDS |
| TTCAAGACGGTCGATGAGAC+GGG | 0.478046 | 2.1:+10319124 | None:intergenic |
| AACTATTGTTGTTGGATACA+TGG | 0.478642 | 2.1:-10317244 | MS.gene055781:CDS |
| AGGACCAGGGTGCTATTCTC+AGG | 0.481892 | 2.1:-10317755 | MS.gene055781:CDS |
| TTTCTGAGAGGGGAAGGGGA+AGG | 0.482488 | 2.1:+10319155 | None:intergenic |
| AGAAGAACAGGAAACTCAAC+TGG | 0.484855 | 2.1:-10316551 | MS.gene055781:CDS |
| GCCTCCTGATTGTAATTAAG+TGG | 0.488567 | 2.1:+10317584 | None:intergenic |
| ATTAACATACTTGAAGGTTG+AGG | 0.503849 | 2.1:+10318888 | None:intergenic |
| TTGATATTTCAGCATTGTCT+CGG | 0.506205 | 2.1:-10318028 | MS.gene055781:intron |
| GAAACTGCAAAATTTAAAGC+AGG | 0.510333 | 2.1:+10317779 | None:intergenic |
| ATGGGAAGTGATTGATTTGG+TGG | 0.511832 | 2.1:+10319230 | None:intergenic |
| ATGATGGGAAGTGATTGATT+TGG | 0.511915 | 2.1:+10319227 | None:intergenic |
| AAAACAAAGATGGTGTTGTT+GGG | 0.515013 | 2.1:-10318983 | MS.gene055781:CDS |
| GTGATGGTGATGGAGATTGT+TGG | 0.526109 | 2.1:+10319189 | None:intergenic |
| GGAAGTGATTGATTTGGTGG+TGG | 0.540264 | 2.1:+10319233 | None:intergenic |
| TCTCAAATTCAATTTCTCAA+AGG | 0.543153 | 2.1:-10317963 | MS.gene055781:intron |
| GAAGGGGAAGGAGATGGTGA+TGG | 0.546393 | 2.1:+10319173 | None:intergenic |
| ATTCAACAAGAAAACAAAGA+TGG | 0.548877 | 2.1:-10318993 | MS.gene055781:CDS |
| ATCAGGAGGCTATGTGTCGC+TGG | 0.549350 | 2.1:-10317571 | MS.gene055781:intron |
| TTTCAAGACGGTCGATGAGA+CGG | 0.551751 | 2.1:+10319123 | None:intergenic |
| ACATCCAAGTCCAAACCAAA+GGG | 0.560703 | 2.1:+10318694 | None:intergenic |
| TACATCCAAGTCCAAACCAA+AGG | 0.566308 | 2.1:+10318693 | None:intergenic |
| ATTCCAGAATGTCAAAAGTA+CGG | 0.567233 | 2.1:+10317187 | None:intergenic |
| GCCACTTAATTACAATCAGG+AGG | 0.572666 | 2.1:-10317585 | MS.gene055781:CDS |
| TGAATTTCAACTTCATATCG+TGG | 0.576316 | 2.1:+10319011 | None:intergenic |
| ATATAACACTCGACCCAAGA+AGG | 0.581043 | 2.1:-10318925 | MS.gene055781:CDS |
| TAGTGAGTGATTTGGTTATG+TGG | 0.584348 | 2.1:-10318736 | MS.gene055781:CDS |
| CAAGATGGAAAAGCACAAGT+AGG | 0.610927 | 2.1:-10316616 | MS.gene055781:CDS |
| AAAAGCACAAGTAGGTGAGA+AGG | 0.616726 | 2.1:-10316608 | MS.gene055781:CDS |
| AGAATTTGAAGAAGAAAATG+GGG | 0.616889 | 2.1:-10318783 | MS.gene055781:CDS |
| GATGAATCTCCTGAACCCGC+CGG | 0.635645 | 2.1:-10319092 | MS.gene055781:CDS |
| CATCAGCGGCTGTTTCAAGA+CGG | 0.637889 | 2.1:+10319111 | None:intergenic |
| ATTGGTTTAACGGTGATGAT+GGG | 0.641254 | 2.1:+10319212 | None:intergenic |
| CAGATACTTAAAGCAGCATG+TGG | 0.658923 | 2.1:-10316650 | MS.gene055781:CDS |
| TTCTCCTGAGAATAGCACCC+TGG | 0.662515 | 2.1:+10317751 | None:intergenic |
| GAGAATCGCCAATTGTGACA+AGG | 0.663769 | 2.1:+10318005 | None:intergenic |
| GTGGTGCTGCAATTACAAGA+TGG | 0.665984 | 2.1:-10316631 | MS.gene055781:CDS |
| AAAACAACACTCGAAAACCA+AGG | 0.683112 | 2.1:-10319037 | MS.gene055781:CDS |
| CTATTTGTATTTCAGCAAAG+GGG | 0.684853 | 2.1:-10317867 | MS.gene055781:intron |
| CCCGCCGGTGTAAAACGTCG+TGG | 0.690369 | 2.1:-10319077 | MS.gene055781:CDS |
| ACTAGTCAGATAGACAAGCG+AGG | 0.729323 | 2.1:-10317386 | MS.gene055781:intron |
| GGGTTCAGGAGATTCATCAG+CGG | 0.747685 | 2.1:+10319097 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATCACAAAAAAAAAATT+AGG | + | chr2.1:10316946-10316965 | None:intergenic | 10.0% |
| !! | AAATCACAAAAAAAAAATTA+GGG | + | chr2.1:10316945-10316964 | None:intergenic | 10.0% |
| !! | ATCTAGTCTATATAAAAAAA+TGG | - | chr2.1:10318865-10318884 | MS.gene055781:intron | 15.0% |
| !! | ATACTATAAACATAACATAC+AGG | - | chr2.1:10318303-10318322 | MS.gene055781:intron | 20.0% |
| !! | CTATAATAAATGCTAACAAA+TGG | - | chr2.1:10318092-10318111 | MS.gene055781:intron | 20.0% |
| !! | GTTTACTAAGCAAAATTAAA+GGG | + | chr2.1:10317153-10317172 | None:intergenic | 20.0% |
| !! | TAACTCAGATTCAAAAAATA+AGG | - | chr2.1:10319240-10319259 | MS.gene055781:CDS | 20.0% |
| !! | TAGAATTTGAAGAAGAAAAT+GGG | - | chr2.1:10316971-10316990 | MS.gene055781:intron | 20.0% |
| !!! | CTTAGTAATTATTGATTAAG+TGG | - | chr2.1:10318700-10318719 | MS.gene055781:CDS | 20.0% |
| !!! | TCTTATGATATCATTTTTGT+TGG | - | chr2.1:10319057-10319076 | MS.gene055781:CDS | 20.0% |
| ! | AAGCCATATGTATAATAACA+CGG | + | chr2.1:10317463-10317482 | None:intergenic | 25.0% |
| ! | AAGCGAACTATAATAGAAAT+TGG | + | chr2.1:10318258-10318277 | None:intergenic | 25.0% |
| ! | AATTCAGAATAAGAACATTG+TGG | + | chr2.1:10318053-10318072 | None:intergenic | 25.0% |
| ! | AATTGAACATAAATTTGTGC+AGG | + | chr2.1:10318767-10318786 | None:intergenic | 25.0% |
| ! | ACTATGAATCTTAAAATCCA+AGG | - | chr2.1:10318970-10318989 | MS.gene055781:CDS | 25.0% |
| ! | AGAATTTGAAGAAGAAAATG+GGG | - | chr2.1:10316972-10316991 | MS.gene055781:intron | 25.0% |
| ! | AGCGAACTATAATAGAAATT+GGG | + | chr2.1:10318257-10318276 | None:intergenic | 25.0% |
| ! | ATAAGAATCAACTTTGACAA+AGG | + | chr2.1:10319043-10319062 | None:intergenic | 25.0% |
| ! | ATGTCAGAATATGATAGTTT+AGG | - | chr2.1:10317346-10317365 | MS.gene055781:intron | 25.0% |
| ! | ATTCAACAAGAAAACAAAGA+TGG | - | chr2.1:10316762-10316781 | MS.gene055781:intron | 25.0% |
| ! | ATTTGTGATCTTTATTCTCA+TGG | - | chr2.1:10317681-10317700 | MS.gene055781:intron | 25.0% |
| ! | GGTTTACTAAGCAAAATTAA+AGG | + | chr2.1:10317154-10317173 | None:intergenic | 25.0% |
| ! | GTAGAATTTGAAGAAGAAAA+TGG | - | chr2.1:10316970-10316989 | MS.gene055781:intron | 25.0% |
| ! | TAATTCATTCATGTAGTACT+AGG | - | chr2.1:10317499-10317518 | MS.gene055781:intron | 25.0% |
| ! | TAGTTAAGCAATCCAATTAA+AGG | + | chr2.1:10317175-10317194 | None:intergenic | 25.0% |
| ! | TATATAGATGATAGAGTTCA+TGG | + | chr2.1:10318218-10318237 | None:intergenic | 25.0% |
| ! | TCCAAGGAGTTATTTATTTA+TGG | - | chr2.1:10318986-10319005 | MS.gene055781:CDS | 25.0% |
| ! | TCCATAAATAAATAACTCCT+TGG | + | chr2.1:10318990-10319009 | None:intergenic | 25.0% |
| ! | TCTATTTGTATTTCAGCAAA+GGG | - | chr2.1:10317887-10317906 | MS.gene055781:intron | 25.0% |
| ! | TCTCAAATTCAATTTCTCAA+AGG | - | chr2.1:10317792-10317811 | MS.gene055781:CDS | 25.0% |
| ! | TGTCAGAATATGATAGTTTA+GGG | - | chr2.1:10317347-10317366 | MS.gene055781:intron | 25.0% |
| ! | TTCTATTTGTATTTCAGCAA+AGG | - | chr2.1:10317886-10317905 | MS.gene055781:intron | 25.0% |
| ! | TTGCTTAGTAAACCTTTAAT+TGG | - | chr2.1:10317160-10317179 | MS.gene055781:CDS | 25.0% |
| !! | AAATTGGGTTTTCAAAGAAA+AGG | + | chr2.1:10318242-10318261 | None:intergenic | 25.0% |
| !! | AACATTGTGGATTACTTTAA+GGG | + | chr2.1:10318040-10318059 | None:intergenic | 25.0% |
| !! | CTTTAAATTTTGCAGTTTCA+AGG | - | chr2.1:10317980-10317999 | MS.gene055781:CDS | 25.0% |
| !! | GTGTTATATTTTCTCTTTCT+AGG | + | chr2.1:10316819-10316838 | None:intergenic | 25.0% |
| !! | GTTAATAATTTTCTTGTTGC+AGG | - | chr2.1:10318114-10318133 | MS.gene055781:intron | 25.0% |
| !! | TGTAGCAAGAATAAAGTTTT+GGG | + | chr2.1:10318350-10318369 | None:intergenic | 25.0% |
| !!! | TTGGATTTTAAGATTCATAG+TGG | + | chr2.1:10318971-10318990 | None:intergenic | 25.0% |
| AGAGTGATAGCTGATAATTT+AGG | - | chr2.1:10317231-10317250 | MS.gene055781:CDS | 30.0% | |
| ATCAAAACTCGAATCTTTAC+AGG | - | chr2.1:10318600-10318619 | MS.gene055781:intron | 30.0% | |
| ATGTAACAAAATCAACCCTT+TGG | - | chr2.1:10317046-10317065 | MS.gene055781:intron | 30.0% | |
| ATTAACATACTTGAAGGTTG+AGG | + | chr2.1:10316870-10316889 | None:intergenic | 30.0% | |
| ATTAAGTGGAAAGATAACTG+TGG | - | chr2.1:10318714-10318733 | MS.gene055781:CDS | 30.0% | |
| ATTCCAGAATGTCAAAAGTA+CGG | + | chr2.1:10318571-10318590 | None:intergenic | 30.0% | |
| CACTCACAAGAAGAAATTAA+CGG | - | chr2.1:10318542-10318561 | MS.gene055781:intron | 30.0% | |
| CATTGCATTAACATACTTGA+AGG | + | chr2.1:10316876-10316895 | None:intergenic | 30.0% | |
| CTATTTGTATTTCAGCAAAG+GGG | - | chr2.1:10317888-10317907 | MS.gene055781:intron | 30.0% | |
| GCTATTCATTTCTATAGTTC+AGG | - | chr2.1:10317308-10317327 | MS.gene055781:intron | 30.0% | |
| TGAATTTCAACTTCATATCG+TGG | + | chr2.1:10316747-10316766 | None:intergenic | 30.0% | |
| TTGATATTTCAGCATTGTCT+CGG | - | chr2.1:10317727-10317746 | MS.gene055781:intron | 30.0% | |
| ! | AAAGTTAGGTTTTTCCTTCT+TGG | + | chr2.1:10316847-10316866 | None:intergenic | 30.0% |
| ! | AACTATTGTTGTTGGATACA+TGG | - | chr2.1:10318511-10318530 | MS.gene055781:intron | 30.0% |
| ! | AAGTTAGGTTTTTCCTTCTT+GGG | + | chr2.1:10316846-10316865 | None:intergenic | 30.0% |
| ! | ATTACTTTAAGGGTCATTGA+TGG | + | chr2.1:10318030-10318049 | None:intergenic | 30.0% |
| ! | GAAACTGCAAAATTTAAAGC+AGG | + | chr2.1:10317979-10317998 | None:intergenic | 30.0% |
| ! | GAACATTGTGGATTACTTTA+AGG | + | chr2.1:10318041-10318060 | None:intergenic | 30.0% |
| ! | GGGTTGATTTAGATCATATT+GGG | - | chr2.1:10316992-10317011 | MS.gene055781:intron | 30.0% |
| ! | GTAATTCCTTTTCTTCTACT+AGG | - | chr2.1:10318136-10318155 | MS.gene055781:intron | 30.0% |
| ! | GTGTAGCAAGAATAAAGTTT+TGG | + | chr2.1:10318351-10318370 | None:intergenic | 30.0% |
| ! | TCAATTTTTCTATGTGTGCT+AGG | - | chr2.1:10318781-10318800 | MS.gene055781:CDS | 30.0% |
| ! | TTACTAAGACATTTTGCAGA+AGG | + | chr2.1:10318688-10318707 | None:intergenic | 30.0% |
| ! | TTATCTTCATGCTTTTCTCA+AGG | - | chr2.1:10317093-10317112 | MS.gene055781:intron | 30.0% |
| ! | TTTCTCAAGGTTTCAGTTTT+AGG | - | chr2.1:10317106-10317125 | MS.gene055781:intron | 30.0% |
| !! | AAAACAAAGATGGTGTTGTT+GGG | - | chr2.1:10316772-10316791 | MS.gene055781:intron | 30.0% |
| !! | AGATTGTTGGATTGGTTTAA+CGG | + | chr2.1:10316556-10316575 | None:intergenic | 30.0% |
| !!! | TAACTTGTTGAAGCTTTTGT+AGG | - | chr2.1:10318415-10318434 | MS.gene055781:intron | 30.0% |
| AAAACAACACTCGAAAACCA+AGG | - | chr2.1:10316718-10316737 | MS.gene055781:intron | 35.0% | |
| ACAAAATCAACCCTTTGGTT+TGG | - | chr2.1:10317051-10317070 | MS.gene055781:intron | 35.0% | |
| ACAACAGAAAAAAGAACCAG+TGG | - | chr2.1:10319171-10319190 | MS.gene055781:CDS | 35.0% | |
| GACTCATAAGCACAAAAGAT+GGG | - | chr2.1:10317394-10317413 | MS.gene055781:CDS | 35.0% | |
| GATTGTTTGTTTACGCAGTT+TGG | + | chr2.1:10317567-10317586 | None:intergenic | 35.0% | |
| TAAACTCCAATACATTGCAG+TGG | + | chr2.1:10318895-10318914 | None:intergenic | 35.0% | |
| TCATGGTTATCGTTGTAATC+TGG | - | chr2.1:10317436-10317455 | MS.gene055781:intron | 35.0% | |
| TCTATAGTTCAGGATCAGAT+AGG | - | chr2.1:10317318-10317337 | MS.gene055781:intron | 35.0% | |
| TCTATTTAGCCCCTCAAAAT+TGG | - | chr2.1:10317206-10317225 | MS.gene055781:CDS | 35.0% | |
| TGACTCATAAGCACAAAAGA+TGG | - | chr2.1:10317393-10317412 | MS.gene055781:CDS | 35.0% | |
| TTATATGCATATGCAGCTGA+GGG | - | chr2.1:10318483-10318502 | MS.gene055781:intron | 35.0% | |
| TTCTCATGGAGAAAAAACTG+AGG | - | chr2.1:10317695-10317714 | MS.gene055781:intron | 35.0% | |
| TTGGCCACTTAATTACAATC+AGG | - | chr2.1:10318167-10318186 | MS.gene055781:intron | 35.0% | |
| ! | ACAATTGGCGATTCTCATTT+TGG | - | chr2.1:10317757-10317776 | MS.gene055781:CDS | 35.0% |
| ! | ATCACTCTCTCCAATTTTGA+GGG | + | chr2.1:10317219-10317238 | None:intergenic | 35.0% |
| ! | ATGATGGGAAGTGATTGATT+TGG | + | chr2.1:10316531-10316550 | None:intergenic | 35.0% |
| ! | ATTGGTTTAACGGTGATGAT+GGG | + | chr2.1:10316546-10316565 | None:intergenic | 35.0% |
| ! | CAATTGGCGATTCTCATTTT+GGG | - | chr2.1:10317758-10317777 | MS.gene055781:CDS | 35.0% |
| ! | GGACCGTGTTATTATACATA+TGG | - | chr2.1:10317457-10317476 | MS.gene055781:intron | 35.0% |
| ! | GGGGTTGATTTAGATCATAT+TGG | - | chr2.1:10316991-10317010 | MS.gene055781:intron | 35.0% |
| ! | GGGTTTGAAACTATTGTTGT+TGG | - | chr2.1:10318503-10318522 | MS.gene055781:intron | 35.0% |
| ! | TATCACTCTCTCCAATTTTG+AGG | + | chr2.1:10317220-10317239 | None:intergenic | 35.0% |
| !! | GAAAACAAAGATGGTGTTGT+TGG | - | chr2.1:10316771-10316790 | MS.gene055781:intron | 35.0% |
| !! | TAGTGAGTGATTTGGTTATG+TGG | - | chr2.1:10317019-10317038 | MS.gene055781:intron | 35.0% |
| !!! | AGTGTTGTTTTGAATGAGTC+TGG | + | chr2.1:10316709-10316728 | None:intergenic | 35.0% |
| AAGCACAAAAGATGGGCAAA+GGG | - | chr2.1:10317401-10317420 | MS.gene055781:CDS | 40.0% | |
| ACAGAAAAAAGAACCAGTGG+TGG | - | chr2.1:10319174-10319193 | MS.gene055781:CDS | 40.0% | |
| ACATCCAAGTCCAAACCAAA+GGG | + | chr2.1:10317064-10317083 | None:intergenic | 40.0% | |
| ACTTCATATCGTGGTTTCCT+TGG | + | chr2.1:10316738-10316757 | None:intergenic | 40.0% | |
| AGAAGAACAGGAAACTCAAC+TGG | - | chr2.1:10319204-10319223 | MS.gene055781:CDS | 40.0% | |
| ATATAACACTCGACCCAAGA+AGG | - | chr2.1:10316830-10316849 | MS.gene055781:intron | 40.0% | |
| CAGATACTTAAAGCAGCATG+TGG | - | chr2.1:10319105-10319124 | MS.gene055781:CDS | 40.0% | |
| CTTCTACTAGGAGCTGAATT+TGG | - | chr2.1:10318148-10318167 | MS.gene055781:intron | 40.0% | |
| CTTGAAGGTTGAGGAAAGTT+AGG | + | chr2.1:10316861-10316880 | None:intergenic | 40.0% | |
| GAGTTTATTCAGCAATACGC+TGG | - | chr2.1:10318908-10318927 | MS.gene055781:CDS | 40.0% | |
| GCCACTTAATTACAATCAGG+AGG | - | chr2.1:10318170-10318189 | MS.gene055781:intron | 40.0% | |
| GCCTCCTGATTGTAATTAAG+TGG | + | chr2.1:10318174-10318193 | None:intergenic | 40.0% | |
| GGTGGTAAAAACAGAAGAAC+AGG | - | chr2.1:10319192-10319211 | MS.gene055781:CDS | 40.0% | |
| GTTATATGCATATGCAGCTG+AGG | - | chr2.1:10318482-10318501 | MS.gene055781:intron | 40.0% | |
| TAAGCACAAAAGATGGGCAA+AGG | - | chr2.1:10317400-10317419 | MS.gene055781:CDS | 40.0% | |
| TACATCCAAGTCCAAACCAA+AGG | + | chr2.1:10317065-10317084 | None:intergenic | 40.0% | |
| TCAGCTCCTAGTAGAAGAAA+AGG | + | chr2.1:10318145-10318164 | None:intergenic | 40.0% | |
| TGCTCTGTAATTGTTGACGT+AGG | - | chr2.1:10317532-10317551 | MS.gene055781:intron | 40.0% | |
| ! | AAAAGCACAAGTAGGTGAGA+AGG | - | chr2.1:10319147-10319166 | MS.gene055781:CDS | 40.0% |
| ! | ATTTTGCAGTTTCAAGGACC+AGG | - | chr2.1:10317986-10318005 | MS.gene055781:CDS | 40.0% |
| ! | CAAGATGGAAAAGCACAAGT+AGG | - | chr2.1:10319139-10319158 | MS.gene055781:CDS | 40.0% |
| ! | TCACTCTCTCCAATTTTGAG+GGG | + | chr2.1:10317218-10317237 | None:intergenic | 40.0% |
| ! | TGTCCGTACTTTTGACATTC+TGG | - | chr2.1:10318565-10318584 | MS.gene055781:intron | 40.0% |
| ! | TTTTGCAGTTTCAAGGACCA+GGG | - | chr2.1:10317987-10318006 | MS.gene055781:CDS | 40.0% |
| !! | ATGGGAAGTGATTGATTTGG+TGG | + | chr2.1:10316528-10316547 | None:intergenic | 40.0% |
| !! | GATTGGTTTAACGGTGATGA+TGG | + | chr2.1:10316547-10316566 | None:intergenic | 40.0% |
| !! | GTTGGGTTGGTTGAAGAAAT+TGG | - | chr2.1:10316789-10316808 | MS.gene055781:intron | 40.0% |
| !! | TGTGCAGGAGTGATTTGTTA+AGG | + | chr2.1:10318752-10318771 | None:intergenic | 40.0% |
| !!! | TCTTCTGTTTTTACCACCAC+TGG | + | chr2.1:10319190-10319209 | None:intergenic | 40.0% |
| AAAAGATGGGCAAAGGGCTT+GGG | - | chr2.1:10317407-10317426 | MS.gene055781:CDS | 45.0% | |
| AAGGGCTTGGGTACATATCA+TGG | - | chr2.1:10317419-10317438 | MS.gene055781:CDS | 45.0% | |
| ACTAGTCAGATAGACAAGCG+AGG | - | chr2.1:10318369-10318388 | MS.gene055781:intron | 45.0% | |
| ATTGTTGACGTAGGCACACT+TGG | - | chr2.1:10317541-10317560 | MS.gene055781:intron | 45.0% | |
| CTCCAATACATTGCAGTGGA+AGG | + | chr2.1:10318891-10318910 | None:intergenic | 45.0% | |
| GAGAATCGCCAATTGTGACA+AGG | + | chr2.1:10317753-10317772 | None:intergenic | 45.0% | |
| GGAAACTCAACTGGCATTAG+TGG | - | chr2.1:10319213-10319232 | MS.gene055781:CDS | 45.0% | |
| TTTCAAGACGGTCGATGAGA+CGG | + | chr2.1:10316635-10316654 | None:intergenic | 45.0% | |
| ! | GTTGGCAGCTTTTATGTTGC+TGG | - | chr2.1:10319075-10319094 | MS.gene055781:CDS | 45.0% |
| ! | TTTGCCACGACGTTTTACAC+CGG | + | chr2.1:10316685-10316704 | None:intergenic | 45.0% |
| !! | CAAAGATGGTGTTGTTGGGT+TGG | - | chr2.1:10316776-10316795 | MS.gene055781:intron | 45.0% |
| !! | GGAAGTGATTGATTTGGTGG+TGG | + | chr2.1:10316525-10316544 | None:intergenic | 45.0% |
| !! | GGGTCTTGGATTTTCTGAGA+GGG | + | chr2.1:10316614-10316633 | None:intergenic | 45.0% |
| !! | GGTCTTGGATTTTCTGAGAG+GGG | + | chr2.1:10316613-10316632 | None:intergenic | 45.0% |
| !! | GGTGATGGAGATTGTTGGAT+TGG | + | chr2.1:10316564-10316583 | None:intergenic | 45.0% |
| !! | GTGATGGTGATGGAGATTGT+TGG | + | chr2.1:10316569-10316588 | None:intergenic | 45.0% |
| !! | GTGGTGCTGCAATTACAAGA+TGG | - | chr2.1:10319124-10319143 | MS.gene055781:CDS | 45.0% |
| !! | TCAACCCTTTGGTTTGGACT+TGG | - | chr2.1:10317057-10317076 | MS.gene055781:intron | 45.0% |
| !! | TGGATTTTCTGAGAGGGGAA+GGG | + | chr2.1:10316608-10316627 | None:intergenic | 45.0% |
| !! | TTGGATTTTCTGAGAGGGGA+AGG | + | chr2.1:10316609-10316628 | None:intergenic | 45.0% |
| CAAAAGATGGGCAAAGGGCT+TGG | - | chr2.1:10317406-10317425 | MS.gene055781:CDS | 50.0% | |
| GGCCTTCCACTGCAATGTAT+TGG | - | chr2.1:10318886-10318905 | MS.gene055781:intron | 50.0% | |
| GGGTTCAGGAGATTCATCAG+CGG | + | chr2.1:10316661-10316680 | None:intergenic | 50.0% | |
| TGGGCAGCTAGTGAGTGATT+TGG | - | chr2.1:10317011-10317030 | MS.gene055781:intron | 50.0% | |
| TTCAAGACGGTCGATGAGAC+GGG | + | chr2.1:10316634-10316653 | None:intergenic | 50.0% | |
| TTCTCCTGAGAATAGCACCC+TGG | + | chr2.1:10318007-10318026 | None:intergenic | 50.0% | |
| ! | CATCAGCGGCTGTTTCAAGA+CGG | + | chr2.1:10316647-10316666 | None:intergenic | 50.0% |
| ! | CGGGTCTTGGATTTTCTGAG+AGG | + | chr2.1:10316615-10316634 | None:intergenic | 50.0% |
| ! | TGTCTCGGCCTTGTCACAAT+TGG | - | chr2.1:10317742-10317761 | MS.gene055781:CDS | 50.0% |
| !! | GAAGGAGATGGTGATGGTGA+TGG | + | chr2.1:10316579-10316598 | None:intergenic | 50.0% |
| !! | GGATTTTCTGAGAGGGGAAG+GGG | + | chr2.1:10316607-10316626 | None:intergenic | 50.0% |
| ATCAGGAGGCTATGTGTCGC+TGG | - | chr2.1:10318184-10318203 | MS.gene055781:intron | 55.0% | |
| GAAGGGGAAGGAGATGGTGA+TGG | + | chr2.1:10316585-10316604 | None:intergenic | 55.0% | |
| GATGAATCTCCTGAACCCGC+CGG | - | chr2.1:10316663-10316682 | MS.gene055781:CDS | 55.0% | |
| ! | GAGGCTATGTGTCGCTGGTT+AGG | - | chr2.1:10318189-10318208 | MS.gene055781:intron | 55.0% |
| ! | TTCTGAGAGGGGAAGGGGAA+GGG | + | chr2.1:10316602-10316621 | None:intergenic | 55.0% |
| ! | TTTCTGAGAGGGGAAGGGGA+AGG | + | chr2.1:10316603-10316622 | None:intergenic | 55.0% |
| !! | AGGACCAGGGTGCTATTCTC+AGG | - | chr2.1:10318000-10318019 | MS.gene055781:CDS | 55.0% |
| ACGGTCGATGAGACGGGTCT+TGG | + | chr2.1:10316628-10316647 | None:intergenic | 60.0% | |
| GAAGGGGAAGGGGAAGGAGA+TGG | + | chr2.1:10316591-10316610 | None:intergenic | 60.0% | |
| TCTGAGAGGGGAAGGGGAAG+GGG | + | chr2.1:10316601-10316620 | None:intergenic | 60.0% | |
| ! | CCACGACGTTTTACACCGGC+GGG | + | chr2.1:10316681-10316700 | None:intergenic | 60.0% |
| ! | GCCACGACGTTTTACACCGG+CGG | + | chr2.1:10316682-10316701 | None:intergenic | 60.0% |
| !! | CGTTTTACACCGGCGGGTTC+AGG | + | chr2.1:10316675-10316694 | None:intergenic | 60.0% |
| AGAGGGGAAGGGGAAGGGGA+AGG | + | chr2.1:10316597-10316616 | None:intergenic | 65.0% | |
| CCCGCCGGTGTAAAACGTCG+TGG | - | chr2.1:10316678-10316697 | MS.gene055781:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.1 | gene | 10316507 | 10319270 | 10316507 | ID=MS.gene055781 |
| chr2.1 | mRNA | 10316507 | 10319270 | 10316507 | ID=MS.gene055781.t1;Parent=MS.gene055781 |
| chr2.1 | exon | 10318898 | 10319270 | 10318898 | ID=MS.gene055781.t1.exon1;Parent=MS.gene055781.t1 |
| chr2.1 | CDS | 10318898 | 10319270 | 10318898 | ID=cds.MS.gene055781.t1;Parent=MS.gene055781.t1 |
| chr2.1 | exon | 10318650 | 10318803 | 10318650 | ID=MS.gene055781.t1.exon2;Parent=MS.gene055781.t1 |
| chr2.1 | CDS | 10318650 | 10318803 | 10318650 | ID=cds.MS.gene055781.t1;Parent=MS.gene055781.t1 |
| chr2.1 | exon | 10317964 | 10318038 | 10317964 | ID=MS.gene055781.t1.exon3;Parent=MS.gene055781.t1 |
| chr2.1 | CDS | 10317964 | 10318038 | 10317964 | ID=cds.MS.gene055781.t1;Parent=MS.gene055781.t1 |
| chr2.1 | exon | 10317733 | 10317874 | 10317733 | ID=MS.gene055781.t1.exon4;Parent=MS.gene055781.t1 |
| chr2.1 | CDS | 10317733 | 10317874 | 10317733 | ID=cds.MS.gene055781.t1;Parent=MS.gene055781.t1 |
| chr2.1 | exon | 10317572 | 10317641 | 10317572 | ID=MS.gene055781.t1.exon5;Parent=MS.gene055781.t1 |
| chr2.1 | CDS | 10317572 | 10317641 | 10317572 | ID=cds.MS.gene055781.t1;Parent=MS.gene055781.t1 |
| chr2.1 | exon | 10317387 | 10317452 | 10317387 | ID=MS.gene055781.t1.exon6;Parent=MS.gene055781.t1 |
| chr2.1 | CDS | 10317387 | 10317452 | 10317387 | ID=cds.MS.gene055781.t1;Parent=MS.gene055781.t1 |
| chr2.1 | exon | 10317156 | 10317278 | 10317156 | ID=MS.gene055781.t1.exon7;Parent=MS.gene055781.t1 |
| chr2.1 | CDS | 10317156 | 10317278 | 10317156 | ID=cds.MS.gene055781.t1;Parent=MS.gene055781.t1 |
| chr2.1 | exon | 10316507 | 10316694 | 10316507 | ID=MS.gene055781.t1.exon8;Parent=MS.gene055781.t1 |
| chr2.1 | CDS | 10316507 | 10316694 | 10316507 | ID=cds.MS.gene055781.t1;Parent=MS.gene055781.t1 |
| Gene Sequence |
| Protein sequence |
