AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene37102

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37102.t1 MTR_6g016820 97.309 669 18 0 1 669 1 669 0.0 1331
MS.gene37102.t1 MTR_6g016800 77.861 664 145 2 7 670 6 667 0.0 1022
MS.gene37102.t1 MTR_6g016795 76.889 675 151 4 1 674 1 671 0.0 1016
MS.gene37102.t1 MTR_6g016785 70.765 667 193 2 8 674 71 735 0.0 998
MS.gene37102.t1 MTR_6g016840 73.676 680 172 4 1 674 1 679 0.0 973
MS.gene37102.t1 MTR_6g016790 67.069 662 209 5 10 668 4 659 0.0 877
MS.gene37102.t1 MTR_7g013170 64.939 656 223 6 15 668 13 663 0.0 872
MS.gene37102.t1 MTR_6g016845 68.155 672 204 6 1 668 13 678 0.0 866
MS.gene37102.t1 MTR_6g016810 66.465 662 213 5 10 668 4 659 0.0 859
MS.gene37102.t1 MTR_7g013810 64.297 661 229 6 10 668 5 660 0.0 845
MS.gene37102.t1 MTR_7g028445 63.609 654 191 7 1 650 1 611 0.0 766
MS.gene37102.t1 MTR_4g036905 63.609 654 191 7 1 650 1 611 0.0 766
MS.gene37102.t1 MTR_6g016860 72.093 516 139 4 127 639 1 514 0.0 749
MS.gene37102.t1 MTR_6g016855 71.504 379 93 4 293 670 2 366 0.0 533
MS.gene37102.t1 MTR_1g079270 59.633 327 125 5 230 553 46 368 7.45e-127 380
MS.gene37102.t1 MTR_6g037090 62.829 304 81 3 132 435 39 310 2.30e-123 369
MS.gene37102.t1 MTR_1g079320 46.939 343 93 8 355 662 2 290 3.61e-85 270
MS.gene37102.t1 MTR_7g112730 51.681 238 75 5 418 655 90 287 2.35e-70 231
MS.gene37102.t1 MTR_6g007703 51.235 162 35 4 426 543 4 165 4.58e-40 144
MS.gene37102.t1 MTR_6g007713 52.212 113 28 3 472 584 3 89 8.13e-29 110
MS.gene37102.t1 MTR_6g007717 66.316 95 31 1 267 361 15 108 1.01e-28 114
MS.gene37102.t1 MTR_6g007717 54.545 88 26 3 543 630 123 196 1.61e-20 90.5
MS.gene37102.t1 MTR_6g007700 75.410 61 13 2 293 353 6 64 6.22e-20 86.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene37102.t1 AT5G15870 63.772 668 232 6 6 668 50 712 0.0 863
MS.gene37102.t1 AT1G18310 59.680 687 208 9 8 668 5 648 0.0 795

Find 140 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATTTGGAGAGAAGAATT+TGG 0.194168 6.2:+12412548 None:intergenic
GATTTCTATATGATAGAAAA+TGG 0.209778 6.2:-12411450 MS.gene37102:CDS
CTCAGTTTCTTTCTTGTTAG+AGG 0.219841 6.2:-12412243 MS.gene37102:CDS
GAAAACAAGTCTTCAGAAAT+AGG 0.253373 6.2:+12410845 None:intergenic
CTAACATCATTGGAAATTCT+TGG 0.270373 6.2:-12411040 MS.gene37102:CDS
GAGAAGAATTTGGAGGGGTC+AGG 0.286843 6.2:+12412558 None:intergenic
CATTGTTGAGAACAAAGTTT+TGG 0.299349 6.2:+12412493 None:intergenic
AACTTATACTCAACACAAAA+TGG 0.300414 6.2:+12411910 None:intergenic
TTGGTGTTGTTGGTGATTCA+TGG 0.304570 6.2:-12411759 MS.gene37102:CDS
ATTCTGCTGATTAGAAATTA+TGG 0.320245 6.2:+12412347 None:intergenic
CCCTACTCGCTCTTCGAATT+CGG 0.328068 6.2:-12412403 MS.gene37102:CDS
TACAAGAGAGAATAGGATAG+TGG 0.332455 6.2:-12410963 MS.gene37102:CDS
GGACATTGCCTGCTTTGAAT+AGG 0.339470 6.2:-12410790 MS.gene37102:CDS
ACCATTGAGCCTTGGCTTGA+TGG 0.341713 6.2:-12411490 MS.gene37102:CDS
GGTGACCTTGTTGGTGTTGT+TGG 0.345045 6.2:-12411769 MS.gene37102:CDS
TTCAAGTATACAAGCATTGA+TGG 0.347516 6.2:-12411790 MS.gene37102:CDS
AAATGATCTGAGAAGTAAAA+TGG 0.355916 6.2:+12412055 None:intergenic
GGTGGTGGTGATTTCGGTTT+CGG 0.356411 6.2:-12411394 MS.gene37102:CDS
GACATTGCCTGCTTTGAATA+GGG 0.361169 6.2:-12410789 MS.gene37102:CDS
GATTCTCAACTAGTGTCTAT+TGG 0.371059 6.2:-12411070 MS.gene37102:CDS
AGGGGTGTGGATAGTAGATT+TGG 0.376822 6.2:+12412534 None:intergenic
AATGATGGTGGTGGTGATTT+CGG 0.387295 6.2:-12411400 MS.gene37102:CDS
AATACCAAACAAAGTTCTAA+TGG 0.387997 6.2:-12412327 MS.gene37102:CDS
AGGTAAGGATGAAAGTATTC+AGG 0.390251 6.2:+12412462 None:intergenic
TTTGGAAGAAAGAGTTTGTA+GGG 0.394302 6.2:+12412511 None:intergenic
GAAGGGATTCTTGTATTCAT+TGG 0.394479 6.2:-12410744 MS.gene37102:CDS
AAAATCTTCCACAAGTGAAT+AGG 0.404198 6.2:+12411270 None:intergenic
ATTTCTATATGATAGAAAAT+GGG 0.409571 6.2:-12411449 MS.gene37102:CDS
AGAAGAATTTGGAGGGGTCA+GGG 0.410656 6.2:+12412559 None:intergenic
AAGTTTGAGAAGAATGGTTC+AGG 0.413603 6.2:-12411892 MS.gene37102:CDS
GAGTGCCAAGTCATTGAAAC+AGG 0.416481 6.2:+12411721 None:intergenic
TCACTTTCTAAAGATGTTGA+AGG 0.419561 6.2:-12411655 MS.gene37102:CDS
AAGAAGATAAGAAGCTTGAA+TGG 0.421139 6.2:-12410692 MS.gene37102:CDS
AGTTTAGCATTACCTGCTAA+AGG 0.424367 6.2:+12411940 None:intergenic
TGGAATAATAAAAGAGATAG+TGG 0.435268 6.2:-12410932 MS.gene37102:CDS
GTAAAATGGCTCAACTTGAT+TGG 0.435285 6.2:+12412069 None:intergenic
ATAAAAGAGATAGTGGACTT+TGG 0.435741 6.2:-12410925 MS.gene37102:CDS
GTTGAAACTTGAACCTGGTA+AGG 0.436802 6.2:+12412130 None:intergenic
ATCTTTACAAGTTGCATTCG+TGG 0.436977 6.2:-12411195 MS.gene37102:CDS
TACAAGTTGCATTCGTGGGC+CGG 0.443232 6.2:-12411190 MS.gene37102:CDS
AAGAGTTTACAAGAGAGAAT+AGG 0.443523 6.2:-12410970 MS.gene37102:CDS
ACTCGAATTACACGCGTTTG+AGG 0.443722 6.2:-12411225 MS.gene37102:CDS
AATGGCATGAATGGTGGAAA+TGG 0.445762 6.2:+12412176 None:intergenic
TTACCTTGTGGGAATAGAAA+AGG 0.446335 6.2:+12412594 None:intergenic
TGGATCAACACTAACATCAT+TGG 0.447459 6.2:-12411050 MS.gene37102:CDS
AAGAAACTGAGATTTGAAGA+AGG 0.455758 6.2:+12412255 None:intergenic
CAGAACCTGTTTCAATGACT+TGG 0.456126 6.2:-12411726 MS.gene37102:CDS
CTTCAAATAGCTCCCTTACC+AGG 0.456898 6.2:-12412143 MS.gene37102:CDS
TTTGGAGAGAAGAATTTGGA+GGG 0.459447 6.2:+12412552 None:intergenic
GTTTAGCATTACCTGCTAAA+GGG 0.460474 6.2:+12411941 None:intergenic
CCGAATTCGAAGAGCGAGTA+GGG 0.461264 6.2:+12412403 None:intergenic
GAGTATAAGTTTGAGAAGAA+TGG 0.461332 6.2:-12411898 MS.gene37102:CDS
ATTTGAAGAAGGGATATCTA+AGG 0.462455 6.2:+12412266 None:intergenic
TTTGGTTTGCACCAGCTGAA+TGG 0.474385 6.2:-12410907 MS.gene37102:CDS
ATCATGGGGTAGGAAGTATA+AGG 0.474490 6.2:-12411299 MS.gene37102:CDS
CTAGCTTCTCTCCATTCAGC+TGG 0.476347 6.2:+12410896 None:intergenic
AGTTCTTGTCACCCTTTAGC+AGG 0.477806 6.2:-12411952 MS.gene37102:CDS
CAAAACTTTGTTCTCAACAA+TGG 0.478790 6.2:-12412492 MS.gene37102:CDS
ATACTATGCTGCAGCATTGA+TGG 0.479484 6.2:-12411107 MS.gene37102:CDS
AGAAACTGAGATTTGAAGAA+GGG 0.482154 6.2:+12412256 None:intergenic
GAAAGAAGTAATGGCATGAA+TGG 0.484315 6.2:+12412167 None:intergenic
TCCATCAAGCCAAGGCTCAA+TGG 0.485829 6.2:+12411489 None:intergenic
AATTCGGATTGCTTTGCTAC+CGG 0.490902 6.2:-12412013 MS.gene37102:CDS
ATTTGGAGAGAAGAATTTGG+AGG 0.497207 6.2:+12412551 None:intergenic
AGAGTTTGTAGGGAGGGGTG+TGG 0.501125 6.2:+12412521 None:intergenic
TGAAGGAAACCATTGAGCCT+TGG 0.502582 6.2:-12411498 MS.gene37102:CDS
TTGAATAGGGAAGGTGGTGT+TGG 0.503484 6.2:-12410776 MS.gene37102:CDS
AAGGTGGTGTTGGAGAAGGA+TGG 0.504399 6.2:-12410766 MS.gene37102:CDS
TCTTTACAAGTTGCATTCGT+GGG 0.505312 6.2:-12411194 MS.gene37102:CDS
TTTGATGATTTGATGAGGTA+AGG 0.505364 6.2:+12412447 None:intergenic
TGAGATCATTGTGGAAAACT+TGG 0.505916 6.2:+12412370 None:intergenic
ACAAGAGAGAATAGGATAGT+GGG 0.506032 6.2:-12410962 MS.gene37102:CDS
TTGTAAAGATCGATCCATCA+TGG 0.508510 6.2:-12411315 MS.gene37102:CDS
GACAGAAGTTGAAGATGAAG+AGG 0.508573 6.2:+12411847 None:intergenic
AAGAAAGAGTTTGTAGGGAG+GGG 0.509342 6.2:+12412516 None:intergenic
AGGGAAGGTGGTGTTGGAGA+AGG 0.509453 6.2:-12410770 MS.gene37102:CDS
GAAGAAAGAGTTTGTAGGGA+GGG 0.511194 6.2:+12412515 None:intergenic
AGGAATTCAGCTTATACCAT+TGG 0.521712 6.2:-12410870 MS.gene37102:CDS
TGGTGTTGGAGAAGGATGGA+AGG 0.530678 6.2:-12410762 MS.gene37102:CDS
GGATTCTTGTATTCATTGGA+AGG 0.531934 6.2:-12410740 MS.gene37102:CDS
AAGTTGCATTCGTGGGCCGG+AGG 0.533156 6.2:-12411187 MS.gene37102:CDS
TGTAAAGATCGATCCATCAT+GGG 0.533847 6.2:-12411314 MS.gene37102:CDS
ACAGAAGTTGAAGATGAAGA+GGG 0.541248 6.2:+12411848 None:intergenic
GCTTGCATTGATAGCTGAAG+AGG 0.542751 6.2:-12411560 MS.gene37102:CDS
TGAAAACTCGGTTAGCCCTC+CGG 0.543068 6.2:+12411171 None:intergenic
GGCTCAAGCCTATTCACTTG+TGG 0.545751 6.2:-12411278 MS.gene37102:CDS
ATTCCTTCCATCTGAAAACT+CGG 0.546909 6.2:+12411159 None:intergenic
AGAAGTAATGGCATGAATGG+TGG 0.551604 6.2:+12412170 None:intergenic
GCATTGATGGGAATGGCATA+TGG 0.552186 6.2:-12411094 MS.gene37102:CDS
TGATTATGTTAAAGATCTTG+TGG 0.555489 6.2:-12410816 MS.gene37102:CDS
TTGAAACTTGAACCTGGTAA+GGG 0.555681 6.2:+12412131 None:intergenic
TACTATGCTGCAGCATTGAT+GGG 0.565755 6.2:-12411106 MS.gene37102:CDS
TTTCTATATGATAGAAAATG+GGG 0.568239 6.2:-12411448 MS.gene37102:CDS
ACTCAACAAGGGTCTAATGA+TGG 0.569673 6.2:-12411415 MS.gene37102:CDS
TGCTGCAGCATTGATGGGAA+TGG 0.571662 6.2:-12411101 MS.gene37102:CDS
AGTTGCATTCGTGGGCCGGA+GGG 0.575538 6.2:-12411186 MS.gene37102:CDS
AACTTAACAATGGTCAAACA+TGG 0.576597 6.2:-12412110 MS.gene37102:CDS
TTATACTTCCTACCCCATGA+TGG 0.576717 6.2:+12411301 None:intergenic
ATTTGAAGAGAAAGAAGTAA+TGG 0.576836 6.2:+12412158 None:intergenic
TCTTCAGAAATAGGAGCCAA+TGG 0.576878 6.2:+12410854 None:intergenic
TTGGAGAGAAGAATTTGGAG+GGG 0.578706 6.2:+12412553 None:intergenic
GAATGGAGAGAAGCTAGGAC+AGG 0.578781 6.2:-12410890 MS.gene37102:CDS
TTCAAGTTTCAACTTAACAA+TGG 0.578883 6.2:-12412120 MS.gene37102:CDS
GGACAGTGGAATTACCTTGT+GGG 0.579765 6.2:+12412583 None:intergenic
AGCATTGATGGTGACCTTGT+TGG 0.586532 6.2:-12411778 MS.gene37102:CDS
TTGCCTGCTTTGAATAGGGA+AGG 0.587367 6.2:-12410785 MS.gene37102:CDS
AATTGATTGCAAGAGCAGCT+AGG 0.592296 6.2:-12411582 MS.gene37102:CDS
AGATCGATCCATCATGGGGT+AGG 0.594101 6.2:-12411309 MS.gene37102:CDS
GTGGAAATGGAAAGAGGTGT+TGG 0.598177 6.2:+12412189 None:intergenic
GTTAAGTTGAAACTTGAACC+TGG 0.602043 6.2:+12412125 None:intergenic
CCACCTTCCCTATTCAAAGC+AGG 0.604312 6.2:+12410782 None:intergenic
ATGACTTGGCACTCAAGCAA+AGG 0.607852 6.2:-12411712 MS.gene37102:CDS
AAATTATGGTGAGATCATTG+TGG 0.609775 6.2:+12412361 None:intergenic
GGTGTTGGAGAAGGATGGAA+GGG 0.611057 6.2:-12410761 MS.gene37102:CDS
TGGATTCATAGCAGAGGTGA+AGG 0.613077 6.2:-12410632 MS.gene37102:CDS
GGAAGAAAGAGTTTGTAGGG+AGG 0.615445 6.2:+12412514 None:intergenic
GCCGAATTCGAAGAGCGAGT+AGG 0.620927 6.2:+12412402 None:intergenic
GGAGGACTTATTACTCAACA+AGG 0.629302 6.2:-12411427 MS.gene37102:CDS
TTGTGGTGGATTCATAGCAG+AGG 0.637020 6.2:-12410638 MS.gene37102:CDS
ATGTTAAAGATCTTGTGGAG+TGG 0.637640 6.2:-12410811 MS.gene37102:CDS
CAGCTGAATGGAGAGAAGCT+AGG 0.638354 6.2:-12410895 MS.gene37102:CDS
ATGGCTCAACTTGATTGGTG+AGG 0.640892 6.2:+12412074 None:intergenic
TTCTTGGAACTAAAATGTGG+TGG 0.642249 6.2:-12411024 MS.gene37102:CDS
CTTGTTGATAGTAGAAGACA+TGG 0.642835 6.2:+12412623 None:intergenic
TTAAAAGTTCCATCAAGCCA+AGG 0.643862 6.2:+12411481 None:intergenic
GAGATCATTGTGGAAAACTT+GGG 0.645549 6.2:+12412371 None:intergenic
CAAGGGTCTAATGATGGTGG+TGG 0.647467 6.2:-12411409 MS.gene37102:CDS
ATGAGTTTGATGATTTGATG+AGG 0.647642 6.2:+12412442 None:intergenic
TGAATGGTGGAAATGGAAAG+AGG 0.655266 6.2:+12412183 None:intergenic
AGGACAGTGGAATTACCTTG+TGG 0.656986 6.2:+12412582 None:intergenic
CAACAAGGGTCTAATGATGG+TGG 0.657916 6.2:-12411412 MS.gene37102:CDS
AGAATTTGGAGGGGTCAGGG+AGG 0.658308 6.2:+12412562 None:intergenic
ATTCATAGCAGAGGTGAAGG+TGG 0.659887 6.2:-12410629 MS.gene37102:CDS
CCTGCTTTGAATAGGGAAGG+TGG 0.660094 6.2:-12410782 MS.gene37102:CDS
GGAGGGGTCAGGGAGGACAG+TGG 0.665821 6.2:+12412569 None:intergenic
AATCACCAACAACACCAACA+AGG 0.672487 6.2:+12411764 None:intergenic
CTATATGATAGAAAATGGGG+AGG 0.692525 6.2:-12411445 MS.gene37102:CDS
GTAAAGATCGATCCATCATG+GGG 0.699747 6.2:-12411313 MS.gene37102:CDS
GAGGACTTATTACTCAACAA+GGG 0.708106 6.2:-12411426 MS.gene37102:CDS
AAATTCTTGGAACTAAAATG+TGG 0.708544 6.2:-12411027 MS.gene37102:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTCTATATGATAGAAAAT+GGG - chr6.2:12411791-12411810 MS.gene37102:CDS 15.0%
!!! AAAAGTTAGAAATTTTTTGA+AGG - chr6.2:12411725-12411744 MS.gene37102:CDS 15.0%
!! GATTTCTATATGATAGAAAA+TGG - chr6.2:12411790-12411809 MS.gene37102:CDS 20.0%
!! TTTCTATATGATAGAAAATG+GGG - chr6.2:12411792-12411811 MS.gene37102:CDS 20.0%
!!! ACAACATCATCTTATTTTTA+TGG - chr6.2:12411633-12411652 MS.gene37102:CDS 20.0%
! AAATGATCTGAGAAGTAAAA+TGG + chr6.2:12411188-12411207 None:intergenic 25.0%
! AAATTCTTGGAACTAAAATG+TGG - chr6.2:12412213-12412232 MS.gene37102:CDS 25.0%
! AACTTATACTCAACACAAAA+TGG + chr6.2:12411333-12411352 None:intergenic 25.0%
! ATTTGAAGAGAAAGAAGTAA+TGG + chr6.2:12411085-12411104 None:intergenic 25.0%
! GTTACAGAAAAAGTCAAATA+AGG + chr6.2:12411027-12411046 None:intergenic 25.0%
! TGATTATGTTAAAGATCTTG+TGG - chr6.2:12412424-12412443 MS.gene37102:CDS 25.0%
! TGGAATAATAAAAGAGATAG+TGG - chr6.2:12412308-12412327 MS.gene37102:CDS 25.0%
!! AATACCAAACAAAGTTCTAA+TGG - chr6.2:12410913-12410932 MS.gene37102:CDS 25.0%
!! AATGATCATCATTTTCACTT+AGG - chr6.2:12411876-12411895 MS.gene37102:CDS 25.0%
!! ATTCTGCTGATTAGAAATTA+TGG + chr6.2:12410896-12410915 None:intergenic 25.0%
!! TTCAAGTTTCAACTTAACAA+TGG - chr6.2:12411120-12411139 MS.gene37102:CDS 25.0%
!! TTTTCCATTAGAACTTTGTT+TGG + chr6.2:12410920-12410939 None:intergenic 25.0%
AAAATCTTCCACAAGTGAAT+AGG + chr6.2:12411973-12411992 None:intergenic 30.0%
AAATTATGGTGAGATCATTG+TGG + chr6.2:12410882-12410901 None:intergenic 30.0%
AACTTAACAATGGTCAAACA+TGG - chr6.2:12411130-12411149 MS.gene37102:CDS 30.0%
AAGAAACTGAGATTTGAAGA+AGG + chr6.2:12410988-12411007 None:intergenic 30.0%
AAGAAGATAAGAAGCTTGAA+TGG - chr6.2:12412548-12412567 MS.gene37102:CDS 30.0%
AAGAGTTTACAAGAGAGAAT+AGG - chr6.2:12412270-12412289 MS.gene37102:CDS 30.0%
AGAAACTGAGATTTGAAGAA+GGG + chr6.2:12410987-12411006 None:intergenic 30.0%
ATTTGAAGAAGGGATATCTA+AGG + chr6.2:12410977-12410996 None:intergenic 30.0%
CAAAACTTTGTTCTCAACAA+TGG - chr6.2:12410748-12410767 MS.gene37102:CDS 30.0%
CTAACATCATTGGAAATTCT+TGG - chr6.2:12412200-12412219 MS.gene37102:CDS 30.0%
GAAAACAAGTCTTCAGAAAT+AGG + chr6.2:12412398-12412417 None:intergenic 30.0%
GAGTATAAGTTTGAGAAGAA+TGG - chr6.2:12411342-12411361 MS.gene37102:CDS 30.0%
TAGATTTGGAGAGAAGAATT+TGG + chr6.2:12410695-12410714 None:intergenic 30.0%
TTTGGAAGAAAGAGTTTGTA+GGG + chr6.2:12410732-12410751 None:intergenic 30.0%
! ACTCTTTGACTAATCTTTTG+TGG - chr6.2:12412585-12412604 MS.gene37102:CDS 30.0%
! ATCATTTCTGACAACTTTTC+TGG - chr6.2:12411201-12411220 MS.gene37102:CDS 30.0%
! ATGAGTTTGATGATTTGATG+AGG + chr6.2:12410801-12410820 None:intergenic 30.0%
! CATTGTTGAGAACAAAGTTT+TGG + chr6.2:12410750-12410769 None:intergenic 30.0%
! GATGGAACTTTTAATGGAAA+TGG - chr6.2:12411768-12411787 MS.gene37102:CDS 30.0%
! TCACTTTCTAAAGATGTTGA+AGG - chr6.2:12411585-12411604 MS.gene37102:CDS 30.0%
! TTTGATGATTTGATGAGGTA+AGG + chr6.2:12410796-12410815 None:intergenic 30.0%
!! ACAACTTTTCTGGCATAATT+CGG - chr6.2:12411211-12411230 MS.gene37102:CDS 30.0%
!! ATAAAAGAGATAGTGGACTT+TGG - chr6.2:12412315-12412334 MS.gene37102:CDS 30.0%
!! TTCAAGTATACAAGCATTGA+TGG - chr6.2:12411450-12411469 MS.gene37102:CDS 30.0%
!! TTTTGGAAGAAAGAGTTTGT+AGG + chr6.2:12410733-12410752 None:intergenic 30.0%
AAGTTTGAGAAGAATGGTTC+AGG - chr6.2:12411348-12411367 MS.gene37102:CDS 35.0%
ACAAGAGAGAATAGGATAGT+GGG - chr6.2:12412278-12412297 MS.gene37102:CDS 35.0%
ACAGAAGTTGAAGATGAAGA+GGG + chr6.2:12411395-12411414 None:intergenic 35.0%
AGGAATTCAGCTTATACCAT+TGG - chr6.2:12412370-12412389 MS.gene37102:CDS 35.0%
AGTTTAGCATTACCTGCTAA+AGG + chr6.2:12411303-12411322 None:intergenic 35.0%
ATCTTTACAAGTTGCATTCG+TGG - chr6.2:12412045-12412064 MS.gene37102:CDS 35.0%
ATGTTAAAGATCTTGTGGAG+TGG - chr6.2:12412429-12412448 MS.gene37102:CDS 35.0%
ATTCCTTCCATCTGAAAACT+CGG + chr6.2:12412084-12412103 None:intergenic 35.0%
ATTTGGAGAGAAGAATTTGG+AGG + chr6.2:12410692-12410711 None:intergenic 35.0%
CTATATGATAGAAAATGGGG+AGG - chr6.2:12411795-12411814 MS.gene37102:CDS 35.0%
CTCAGTTTCTTTCTTGTTAG+AGG - chr6.2:12410997-12411016 MS.gene37102:CDS 35.0%
GAAAGAAGTAATGGCATGAA+TGG + chr6.2:12411076-12411095 None:intergenic 35.0%
GAAGGGATTCTTGTATTCAT+TGG - chr6.2:12412496-12412515 MS.gene37102:CDS 35.0%
GAGATCATTGTGGAAAACTT+GGG + chr6.2:12410872-12410891 None:intergenic 35.0%
GAGGACTTATTACTCAACAA+GGG - chr6.2:12411814-12411833 MS.gene37102:CDS 35.0%
GATTCTCAACTAGTGTCTAT+TGG - chr6.2:12412170-12412189 MS.gene37102:CDS 35.0%
GGATTCTTGTATTCATTGGA+AGG - chr6.2:12412500-12412519 MS.gene37102:CDS 35.0%
GGTGGCATGTTAAAAAGAAT+GGG - chr6.2:12412234-12412253 MS.gene37102:CDS 35.0%
GTAAAATGGCTCAACTTGAT+TGG + chr6.2:12411174-12411193 None:intergenic 35.0%
GTTTAGCATTACCTGCTAAA+GGG + chr6.2:12411302-12411321 None:intergenic 35.0%
TACAAGAGAGAATAGGATAG+TGG - chr6.2:12412277-12412296 MS.gene37102:CDS 35.0%
TCTTTACAAGTTGCATTCGT+GGG - chr6.2:12412046-12412065 MS.gene37102:CDS 35.0%
TGAGATCATTGTGGAAAACT+TGG + chr6.2:12410873-12410892 None:intergenic 35.0%
TGGATCAACACTAACATCAT+TGG - chr6.2:12412190-12412209 MS.gene37102:CDS 35.0%
TGGTGGCATGTTAAAAAGAA+TGG - chr6.2:12412233-12412252 MS.gene37102:CDS 35.0%
TGTAAAGATCGATCCATCAT+GGG - chr6.2:12411926-12411945 MS.gene37102:CDS 35.0%
TTAAAAGTTCCATCAAGCCA+AGG + chr6.2:12411762-12411781 None:intergenic 35.0%
TTACCTTGTGGGAATAGAAA+AGG + chr6.2:12410649-12410668 None:intergenic 35.0%
TTCTTGGAACTAAAATGTGG+TGG - chr6.2:12412216-12412235 MS.gene37102:CDS 35.0%
TTGAAACTTGAACCTGGTAA+GGG + chr6.2:12411112-12411131 None:intergenic 35.0%
TTGTAAAGATCGATCCATCA+TGG - chr6.2:12411925-12411944 MS.gene37102:CDS 35.0%
TTTGGAGAGAAGAATTTGGA+GGG + chr6.2:12410691-12410710 None:intergenic 35.0%
! AAACCTTTTCTATTCCCACA+AGG - chr6.2:12410643-12410662 MS.gene37102:CDS 35.0%
! CTTTGACTAATCTTTTGTGG+TGG - chr6.2:12412588-12412607 MS.gene37102:CDS 35.0%
! TGGCTTGATGGAACTTTTAA+TGG - chr6.2:12411762-12411781 MS.gene37102:CDS 35.0%
!! AGGTAAGGATGAAAGTATTC+AGG + chr6.2:12410781-12410800 None:intergenic 35.0%
!! GTTAAGTTGAAACTTGAACC+TGG + chr6.2:12411118-12411137 None:intergenic 35.0%
!! TCGTTTTTCGAATCAGAATC+CGG + chr6.2:12411249-12411268 None:intergenic 35.0%
!!! AGAAGCTTGAATGGTTTTGA+TGG - chr6.2:12412557-12412576 MS.gene37102:CDS 35.0%
AAGAAAGAGTTTGTAGGGAG+GGG + chr6.2:12410727-12410746 None:intergenic 40.0%
AATCACCAACAACACCAACA+AGG + chr6.2:12411479-12411498 None:intergenic 40.0%
AATTCGGATTGCTTTGCTAC+CGG - chr6.2:12411227-12411246 MS.gene37102:CDS 40.0%
AATTGATTGCAAGAGCAGCT+AGG - chr6.2:12411658-12411677 MS.gene37102:CDS 40.0%
ACTCAACAAGGGTCTAATGA+TGG - chr6.2:12411825-12411844 MS.gene37102:CDS 40.0%
AGAAGTAATGGCATGAATGG+TGG + chr6.2:12411073-12411092 None:intergenic 40.0%
CAGAACCTGTTTCAATGACT+TGG - chr6.2:12411514-12411533 MS.gene37102:CDS 40.0%
GAAGAAAGAGTTTGTAGGGA+GGG + chr6.2:12410728-12410747 None:intergenic 40.0%
GACAGAAGTTGAAGATGAAG+AGG + chr6.2:12411396-12411415 None:intergenic 40.0%
GGAGGACTTATTACTCAACA+AGG - chr6.2:12411813-12411832 MS.gene37102:CDS 40.0%
GTAAAGATCGATCCATCATG+GGG - chr6.2:12411927-12411946 MS.gene37102:CDS 40.0%
GTTGAAACTTGAACCTGGTA+AGG + chr6.2:12411113-12411132 None:intergenic 40.0%
TCTTCAGAAATAGGAGCCAA+TGG + chr6.2:12412389-12412408 None:intergenic 40.0%
TTATACTTCCTACCCCATGA+TGG + chr6.2:12411942-12411961 None:intergenic 40.0%
TTGGAGAGAAGAATTTGGAG+GGG + chr6.2:12410690-12410709 None:intergenic 40.0%
! AATGGCATGAATGGTGGAAA+TGG + chr6.2:12411067-12411086 None:intergenic 40.0%
! ATACTATGCTGCAGCATTGA+TGG - chr6.2:12412133-12412152 MS.gene37102:CDS 40.0%
! ATCATGGGGTAGGAAGTATA+AGG - chr6.2:12411941-12411960 MS.gene37102:CDS 40.0%
! GACATTGCCTGCTTTGAATA+GGG - chr6.2:12412451-12412470 MS.gene37102:CDS 40.0%
! TAACCGAGTTTTCAGATGGA+AGG - chr6.2:12412078-12412097 MS.gene37102:CDS 40.0%
! TGAATGGTGGAAATGGAAAG+AGG + chr6.2:12411060-12411079 None:intergenic 40.0%
!! AATGATGGTGGTGGTGATTT+CGG - chr6.2:12411840-12411859 MS.gene37102:CDS 40.0%
!! TACTATGCTGCAGCATTGAT+GGG - chr6.2:12412134-12412153 MS.gene37102:CDS 40.0%
!! TTGGTGTTGTTGGTGATTCA+TGG - chr6.2:12411481-12411500 MS.gene37102:CDS 40.0%
!!! AGCTTGAATGGTTTTGATGG+TGG - chr6.2:12412560-12412579 MS.gene37102:CDS 40.0%
!!! ATAGGATAGTGGGAGTTTTG+TGG - chr6.2:12412288-12412307 MS.gene37102:CDS 40.0%
ACTCGAATTACACGCGTTTG+AGG - chr6.2:12412015-12412034 MS.gene37102:CDS 45.0%
AGAAGAATTTGGAGGGGTCA+GGG + chr6.2:12410684-12410703 None:intergenic 45.0%
AGGACAGTGGAATTACCTTG+TGG + chr6.2:12410661-12410680 None:intergenic 45.0%
AGTTCTTGTCACCCTTTAGC+AGG - chr6.2:12411288-12411307 MS.gene37102:CDS 45.0%
ATGGCTCAACTTGATTGGTG+AGG + chr6.2:12411169-12411188 None:intergenic 45.0%
ATTCATAGCAGAGGTGAAGG+TGG - chr6.2:12412611-12412630 MS.gene37102:CDS 45.0%
CAACAAGGGTCTAATGATGG+TGG - chr6.2:12411828-12411847 MS.gene37102:CDS 45.0%
CTTCAAATAGCTCCCTTACC+AGG - chr6.2:12411097-12411116 MS.gene37102:CDS 45.0%
GAGTGCCAAGTCATTGAAAC+AGG + chr6.2:12411522-12411541 None:intergenic 45.0%
GGAAGAAAGAGTTTGTAGGG+AGG + chr6.2:12410729-12410748 None:intergenic 45.0%
GGACAGTGGAATTACCTTGT+GGG + chr6.2:12410660-12410679 None:intergenic 45.0%
TGAAGGAAACCATTGAGCCT+TGG - chr6.2:12411742-12411761 MS.gene37102:CDS 45.0%
TGGATTCATAGCAGAGGTGA+AGG - chr6.2:12412608-12412627 MS.gene37102:CDS 45.0%
TTGAATAGGGAAGGTGGTGT+TGG - chr6.2:12412464-12412483 MS.gene37102:CDS 45.0%
! AGGGGTGTGGATAGTAGATT+TGG + chr6.2:12410709-12410728 None:intergenic 45.0%
! ATGACTTGGCACTCAAGCAA+AGG - chr6.2:12411528-12411547 MS.gene37102:CDS 45.0%
! GCATTGATGGGAATGGCATA+TGG - chr6.2:12412146-12412165 MS.gene37102:CDS 45.0%
! GCTTGCATTGATAGCTGAAG+AGG - chr6.2:12411680-12411699 MS.gene37102:CDS 45.0%
! GGACATTGCCTGCTTTGAAT+AGG - chr6.2:12412450-12412469 MS.gene37102:CDS 45.0%
! GTGGAAATGGAAAGAGGTGT+TGG + chr6.2:12411054-12411073 None:intergenic 45.0%
! TTGCCTGCTTTGAATAGGGA+AGG - chr6.2:12412455-12412474 MS.gene37102:CDS 45.0%
!! AGCATTGATGGTGACCTTGT+TGG - chr6.2:12411462-12411481 MS.gene37102:CDS 45.0%
!! TTGTGGTGGATTCATAGCAG+AGG - chr6.2:12412602-12412621 MS.gene37102:CDS 45.0%
!! TTTGGTTTGCACCAGCTGAA+TGG - chr6.2:12412333-12412352 MS.gene37102:CDS 45.0%
AGATCGATCCATCATGGGGT+AGG - chr6.2:12411931-12411950 MS.gene37102:CDS 50.0%
CAGCTGAATGGAGAGAAGCT+AGG - chr6.2:12412345-12412364 MS.gene37102:CDS 50.0%
CCACCTTCCCTATTCAAAGC+AGG + chr6.2:12412461-12412480 None:intergenic 50.0%
CCCTACTCGCTCTTCGAATT+CGG - chr6.2:12410837-12410856 MS.gene37102:CDS 50.0%
CCGAATTCGAAGAGCGAGTA+GGG + chr6.2:12410840-12410859 None:intergenic 50.0%
CTAGCTTCTCTCCATTCAGC+TGG + chr6.2:12412347-12412366 None:intergenic 50.0%
GAATGGAGAGAAGCTAGGAC+AGG - chr6.2:12412350-12412369 MS.gene37102:CDS 50.0%
GAGAAGAATTTGGAGGGGTC+AGG + chr6.2:12410685-12410704 None:intergenic 50.0%
GGCTCAAGCCTATTCACTTG+TGG - chr6.2:12411962-12411981 MS.gene37102:CDS 50.0%
TACAAGTTGCATTCGTGGGC+CGG - chr6.2:12412050-12412069 MS.gene37102:CDS 50.0%
TCCATCAAGCCAAGGCTCAA+TGG + chr6.2:12411754-12411773 None:intergenic 50.0%
! AAGGTGGTGTTGGAGAAGGA+TGG - chr6.2:12412474-12412493 MS.gene37102:CDS 50.0%
! ACCATTGAGCCTTGGCTTGA+TGG - chr6.2:12411750-12411769 MS.gene37102:CDS 50.0%
! CCTGCTTTGAATAGGGAAGG+TGG - chr6.2:12412458-12412477 MS.gene37102:CDS 50.0%
! GGGCTAACCGAGTTTTCAGA+TGG - chr6.2:12412074-12412093 MS.gene37102:CDS 50.0%
! GGTGGTGGTGATTTCGGTTT+CGG - chr6.2:12411846-12411865 MS.gene37102:CDS 50.0%
! GGTGTTGGAGAAGGATGGAA+GGG - chr6.2:12412479-12412498 MS.gene37102:CDS 50.0%
! TGAAAACTCGGTTAGCCCTC+CGG + chr6.2:12412072-12412091 None:intergenic 50.0%
! TGGTGTTGGAGAAGGATGGA+AGG - chr6.2:12412478-12412497 MS.gene37102:CDS 50.0%
!! CAAGGGTCTAATGATGGTGG+TGG - chr6.2:12411831-12411850 MS.gene37102:CDS 50.0%
!! GGTGACCTTGTTGGTGTTGT+TGG - chr6.2:12411471-12411490 MS.gene37102:CDS 50.0%
!! TGCTGCAGCATTGATGGGAA+TGG - chr6.2:12412139-12412158 MS.gene37102:CDS 50.0%
AGAATTTGGAGGGGTCAGGG+AGG + chr6.2:12410681-12410700 None:intergenic 55.0%
AGAGTTTGTAGGGAGGGGTG+TGG + chr6.2:12410722-12410741 None:intergenic 55.0%
GCCGAATTCGAAGAGCGAGT+AGG + chr6.2:12410841-12410860 None:intergenic 55.0%
! AGGGAAGGTGGTGTTGGAGA+AGG - chr6.2:12412470-12412489 MS.gene37102:CDS 55.0%
AAGTTGCATTCGTGGGCCGG+AGG - chr6.2:12412053-12412072 MS.gene37102:CDS 60.0%
AGTTGCATTCGTGGGCCGGA+GGG - chr6.2:12412054-12412073 MS.gene37102:CDS 60.0%
GGAGGGGTCAGGGAGGACAG+TGG + chr6.2:12410674-12410693 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.2 gene 12410619 12412643 12410619 ID=MS.gene37102
chr6.2 mRNA 12410619 12412643 12410619 ID=MS.gene37102.t1;Parent=MS.gene37102
chr6.2 exon 12410619 12412643 12410619 ID=MS.gene37102.t1.exon1;Parent=MS.gene37102.t1
chr6.2 CDS 12410619 12412643 12410619 ID=cds.MS.gene37102.t1;Parent=MS.gene37102.t1
Gene Sequence

>MS.gene37102

ATGTCTTCTACTATCAACAAGAACAAACCTTTTCTATTCCCACAAGGTAATTCCACTGTCCTCCCTGACCCCTCCAAATTCTTCTCTCCAAATCTACTATCCACACCCCTCCCTACAAACTCTTTCTTCCAAAACTTTGTTCTCAACAATGGTGATGCACCTGAATACTTTCATCCTTACCTCATCAAATCATCAAACTCATCACTTTCTGTCTCATACCCTACTCGCTCTTCGAATTCGGCTGTCATATCCCAAGTTTTCCACAATGATCTCACCATAATTTCTAATCAGCAGAATACCAAACAAAGTTCTAATGGAAAACATATAATCTCTTCTTATAGTGATCTCAGTGTTACCTTAGATATCCCTTCTTCAAATCTCAGTTTCTTTCTTGTTAGAGGAAGTCCTTATTTGACTTTTTCTGTAACAAAACCAACACCTCTTTCCATTTCCACCATTCATGCCATTACTTCTTTCTCTTCAAATAGCTCCCTTACCAGGTTCAAGTTTCAACTTAACAATGGTCAAACATGGATACTATATGCTTCCTCACCAATCAAGTTGAGCCATTTTACTTCTCAGATCATTTCTGACAACTTTTCTGGCATAATTCGGATTGCTTTGCTACCGGATTCTGATTCGAAAAACGAAGCTGTTCTTGATAGATTTAGTTCTTGTCACCCTTTAGCAGGTAATGCTAAACTCAGAGAACCATTTTGTGTTGAGTATAAGTTTGAGAAGAATGGTTCAGGTGATTTGTTATTGTTAGCACACCCTCTTCATCTTCAACTTCTGTCAAAAAGTGAGAGTGATGTAACTGTTCTTGATGATTTCAAGTATACAAGCATTGATGGTGACCTTGTTGGTGTTGTTGGTGATTCATGGCTTTTGAAAACAGAACCTGTTTCAATGACTTGGCACTCAAGCAAAGGTGTAAAAGACGAATCACGTGATGAAATTGTTTCATCACTTTCTAAAGATGTTGAAGGTTTAAATTCATCTGCAACAAAATCAACAACATCATCTTATTTTTATGGAAAATTGATTGCAAGAGCAGCTAGGCTTGCATTGATAGCTGAAGAGGTTTTCTTCTTTGATGCTATTGAAAAAGTTAGAAATTTTTTGAAGGAAACCATTGAGCCTTGGCTTGATGGAACTTTTAATGGAAATGGATTTCTATATGATAGAAAATGGGGAGGACTTATTACTCAACAAGGGTCTAATGATGGTGGTGGTGATTTCGGTTTCGGAATTTACAATGATCATCATTTTCACTTAGGATATTTTCTTTACGCAATCTCAGTGCTTGTAAAGATCGATCCATCATGGGGTAGGAAGTATAAGGCTCAAGCCTATTCACTTGTGGAAGATTTTATGAACTTAAGCATAGAATCGAACTCGAATTACACGCGTTTGAGGTGTTTCGATCTTTACAAGTTGCATTCGTGGGCCGGAGGGCTAACCGAGTTTTCAGATGGAAGGAATCAAGAGAGTACTAGTGAAGCTGTGAATGCATACTATGCTGCAGCATTGATGGGAATGGCATATGGTGATTCTCAACTAGTGTCTATTGGATCAACACTAACATCATTGGAAATTCTTGGAACTAAAATGTGGTGGCATGTTAAAAAGAATGGGAAATTGTATGAAGAAGAGTTTACAAGAGAGAATAGGATAGTGGGAGTTTTGTGGAATAATAAAAGAGATAGTGGACTTTGGTTTGCACCAGCTGAATGGAGAGAAGCTAGGACAGGAATTCAGCTTATACCATTGGCTCCTATTTCTGAAGACTTGTTTTCTGATGTTGATTATGTTAAAGATCTTGTGGAGTGGACATTGCCTGCTTTGAATAGGGAAGGTGGTGTTGGAGAAGGATGGAAGGGATTCTTGTATTCATTGGAAGGAATTTATGATAATGAAAGTGCATTGAAGAAGATAAGAAGCTTGAATGGTTTTGATGGTGGAAACTCTTTGACTAATCTTTTGTGGTGGATTCATAGCAGAGGTGAAGGTGGTGATGAGTAG
Protein sequence

>MS.gene37102.t1

MSSTINKNKPFLFPQGNSTVLPDPSKFFSPNLLSTPLPTNSFFQNFVLNNGDAPEYFHPYLIKSSNSSLSVSYPTRSSNSAVISQVFHNDLTIISNQQNTKQSSNGKHIISSYSDLSVTLDIPSSNLSFFLVRGSPYLTFSVTKPTPLSISTIHAITSFSSNSSLTRFKFQLNNGQTWILYASSPIKLSHFTSQIISDNFSGIIRIALLPDSDSKNEAVLDRFSSCHPLAGNAKLREPFCVEYKFEKNGSGDLLLLAHPLHLQLLSKSESDVTVLDDFKYTSIDGDLVGVVGDSWLLKTEPVSMTWHSSKGVKDESRDEIVSSLSKDVEGLNSSATKSTTSSYFYGKLIARAARLALIAEEVFFFDAIEKVRNFLKETIEPWLDGTFNGNGFLYDRKWGGLITQQGSNDGGGDFGFGIYNDHHFHLGYFLYAISVLVKIDPSWGRKYKAQAYSLVEDFMNLSIESNSNYTRLRCFDLYKLHSWAGGLTEFSDGRNQESTSEAVNAYYAAALMGMAYGDSQLVSIGSTLTSLEILGTKMWWHVKKNGKLYEEEFTRENRIVGVLWNNKRDSGLWFAPAEWREARTGIQLIPLAPISEDLFSDVDYVKDLVEWTLPALNREGGVGEGWKGFLYSLEGIYDNESALKKIRSLNGFDGGNSLTNLLWWIHSRGEGGDE