Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37399.t1 | KEH33683.1 | 91.6 | 345 | 29 | 0 | 2 | 346 | 144 | 488 | 1.20E-179 | 639 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37399.t1 | Q8VYR4 | 37.2 | 325 | 185 | 4 | 24 | 346 | 235 | 542 | 2.2e-60 | 234.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37399.t1 | A0A072UX81 | 91.6 | 345 | 29 | 0 | 2 | 346 | 144 | 488 | 8.9e-180 | 639.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051044 | MS.gene37399 | 0.806022 | 1.01E-49 | -1.69E-46 |
| MS.gene051127 | MS.gene37399 | 0.805071 | 1.59E-49 | -1.69E-46 |
| MS.gene051138 | MS.gene37399 | 0.834634 | 2.68E-56 | -1.69E-46 |
| MS.gene051517 | MS.gene37399 | 0.80753 | 4.83E-50 | -1.69E-46 |
| MS.gene051863 | MS.gene37399 | 0.809006 | 2.34E-50 | -1.69E-46 |
| MS.gene053420 | MS.gene37399 | 0.812875 | 3.40E-51 | -1.69E-46 |
| MS.gene053488 | MS.gene37399 | 0.800151 | 1.65E-48 | -1.69E-46 |
| MS.gene053887 | MS.gene37399 | 0.820086 | 8.26E-53 | -1.69E-46 |
| MS.gene055942 | MS.gene37399 | 0.808473 | 3.04E-50 | -1.69E-46 |
| MS.gene056224 | MS.gene37399 | 0.821714 | 3.49E-53 | -1.69E-46 |
| MS.gene056590 | MS.gene37399 | 0.819247 | 1.28E-52 | -1.69E-46 |
| MS.gene056591 | MS.gene37399 | 0.819032 | 1.44E-52 | -1.69E-46 |
| MS.gene056856 | MS.gene37399 | 0.847061 | 1.47E-59 | -1.69E-46 |
| MS.gene057768 | MS.gene37399 | 0.810043 | 1.40E-50 | -1.69E-46 |
| MS.gene058093 | MS.gene37399 | 0.810092 | 1.37E-50 | -1.69E-46 |
| MS.gene058099 | MS.gene37399 | 0.838223 | 3.27E-57 | -1.69E-46 |
| MS.gene058603 | MS.gene37399 | 0.850162 | 2.03E-60 | -1.69E-46 |
| MS.gene060405 | MS.gene37399 | 0.810375 | 1.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37399.t1 | MTR_3g450800 | 94.203 | 345 | 20 | 0 | 2 | 346 | 144 | 488 | 0.0 | 675 |
| MS.gene37399.t1 | MTR_0011s0020 | 82.319 | 345 | 61 | 0 | 2 | 346 | 193 | 537 | 0.0 | 605 |
| MS.gene37399.t1 | MTR_2g037830 | 80.580 | 345 | 67 | 0 | 2 | 346 | 193 | 537 | 0.0 | 599 |
| MS.gene37399.t1 | MTR_3g005560 | 73.333 | 345 | 92 | 0 | 2 | 346 | 193 | 537 | 0.0 | 527 |
| MS.gene37399.t1 | MTR_3g005560 | 73.333 | 345 | 92 | 0 | 2 | 346 | 193 | 537 | 0.0 | 526 |
| MS.gene37399.t1 | MTR_2g037830 | 82.500 | 280 | 49 | 0 | 2 | 281 | 193 | 472 | 2.68e-173 | 492 |
| MS.gene37399.t1 | MTR_3g005560 | 75.546 | 229 | 56 | 0 | 2 | 230 | 193 | 421 | 6.30e-117 | 345 |
| MS.gene37399.t1 | MTR_4g088225 | 42.978 | 356 | 190 | 3 | 1 | 346 | 206 | 558 | 3.94e-96 | 301 |
| MS.gene37399.t1 | MTR_4g088225 | 42.978 | 356 | 190 | 3 | 1 | 346 | 206 | 558 | 4.77e-96 | 301 |
| MS.gene37399.t1 | MTR_1g073740 | 41.573 | 356 | 193 | 6 | 1 | 346 | 207 | 557 | 6.77e-88 | 280 |
| MS.gene37399.t1 | MTR_3g060220 | 35.065 | 308 | 186 | 3 | 39 | 346 | 257 | 550 | 1.49e-59 | 204 |
| MS.gene37399.t1 | MTR_3g060220 | 35.065 | 308 | 186 | 3 | 39 | 346 | 258 | 551 | 1.53e-59 | 204 |
| MS.gene37399.t1 | MTR_3g060240 | 34.936 | 312 | 181 | 5 | 39 | 346 | 258 | 551 | 1.21e-58 | 201 |
| MS.gene37399.t1 | MTR_3g060280 | 35.065 | 308 | 181 | 2 | 39 | 346 | 268 | 556 | 1.61e-58 | 199 |
| MS.gene37399.t1 | MTR_3g060280 | 32.075 | 371 | 206 | 5 | 3 | 346 | 205 | 556 | 1.71e-58 | 199 |
| MS.gene37399.t1 | MTR_2g087900 | 34.118 | 340 | 203 | 5 | 25 | 345 | 234 | 571 | 5.68e-58 | 197 |
| MS.gene37399.t1 | MTR_3g060280 | 32.075 | 371 | 206 | 5 | 3 | 346 | 205 | 556 | 2.64e-57 | 198 |
| MS.gene37399.t1 | MTR_4g130510 | 31.830 | 377 | 197 | 7 | 25 | 345 | 472 | 844 | 4.91e-57 | 198 |
| MS.gene37399.t1 | MTR_2g087900 | 34.118 | 340 | 203 | 5 | 25 | 345 | 234 | 571 | 8.43e-57 | 197 |
| MS.gene37399.t1 | MTR_4g130510 | 31.830 | 377 | 197 | 7 | 25 | 345 | 472 | 844 | 1.18e-56 | 198 |
| MS.gene37399.t1 | MTR_8g063270 | 32.320 | 362 | 202 | 6 | 25 | 345 | 221 | 580 | 3.84e-56 | 195 |
| MS.gene37399.t1 | MTR_8g063270 | 32.320 | 362 | 202 | 6 | 25 | 345 | 426 | 785 | 1.15e-55 | 195 |
| MS.gene37399.t1 | MTR_8g086600 | 30.026 | 383 | 202 | 7 | 25 | 345 | 417 | 795 | 8.45e-55 | 193 |
| MS.gene37399.t1 | MTR_2g016630 | 30.233 | 387 | 199 | 8 | 25 | 345 | 402 | 783 | 6.62e-54 | 190 |
| MS.gene37399.t1 | MTR_2g087980 | 30.833 | 360 | 235 | 6 | 1 | 346 | 199 | 558 | 3.95e-51 | 181 |
| MS.gene37399.t1 | MTR_1g069605 | 30.811 | 370 | 205 | 6 | 25 | 345 | 332 | 699 | 4.34e-51 | 182 |
| MS.gene37399.t1 | MTR_2g087960 | 30.303 | 363 | 236 | 6 | 1 | 346 | 206 | 568 | 5.28e-51 | 178 |
| MS.gene37399.t1 | MTR_4g130510 | 29.197 | 411 | 197 | 8 | 25 | 345 | 472 | 878 | 1.67e-50 | 181 |
| MS.gene37399.t1 | MTR_4g050000 | 32.335 | 334 | 213 | 7 | 25 | 346 | 228 | 560 | 4.92e-50 | 178 |
| MS.gene37399.t1 | MTR_2g087960 | 30.303 | 363 | 236 | 6 | 1 | 346 | 206 | 568 | 6.82e-50 | 177 |
| MS.gene37399.t1 | MTR_2g087950 | 31.845 | 336 | 215 | 4 | 25 | 346 | 229 | 564 | 1.07e-49 | 177 |
| MS.gene37399.t1 | MTR_1g039445 | 29.670 | 364 | 199 | 9 | 29 | 344 | 548 | 902 | 9.69e-44 | 161 |
| MS.gene37399.t1 | MTR_4g077910 | 29.894 | 378 | 197 | 8 | 25 | 344 | 574 | 941 | 3.35e-43 | 160 |
| MS.gene37399.t1 | MTR_1g039480 | 29.337 | 392 | 204 | 11 | 15 | 344 | 550 | 930 | 6.09e-43 | 159 |
| MS.gene37399.t1 | MTR_5g029190 | 28.729 | 362 | 194 | 8 | 39 | 344 | 567 | 920 | 1.04e-42 | 158 |
| MS.gene37399.t1 | MTR_2g438220 | 29.050 | 358 | 195 | 9 | 38 | 344 | 474 | 823 | 1.74e-42 | 157 |
| MS.gene37399.t1 | MTR_2g087900 | 35.537 | 242 | 135 | 5 | 25 | 248 | 234 | 472 | 4.50e-38 | 142 |
| MS.gene37399.t1 | MTR_4g130510 | 31.538 | 260 | 122 | 5 | 25 | 231 | 472 | 728 | 5.58e-34 | 132 |
| MS.gene37399.t1 | MTR_3g060280 | 37.129 | 202 | 105 | 3 | 39 | 237 | 268 | 450 | 1.13e-33 | 129 |
| MS.gene37399.t1 | MTR_1g098550 | 40.764 | 157 | 84 | 2 | 23 | 170 | 510 | 666 | 1.13e-33 | 132 |
| MS.gene37399.t1 | MTR_1g098550 | 30.168 | 179 | 110 | 4 | 175 | 346 | 734 | 904 | 2.25e-20 | 92.8 |
| MS.gene37399.t1 | MTR_1g098550 | 40.764 | 157 | 84 | 2 | 23 | 170 | 506 | 662 | 1.14e-33 | 132 |
| MS.gene37399.t1 | MTR_1g098550 | 30.168 | 179 | 110 | 4 | 175 | 346 | 730 | 900 | 2.07e-20 | 93.2 |
| MS.gene37399.t1 | MTR_8g037260 | 39.744 | 156 | 86 | 1 | 23 | 170 | 490 | 645 | 3.54e-33 | 130 |
| MS.gene37399.t1 | MTR_8g037260 | 33.143 | 175 | 108 | 5 | 176 | 346 | 715 | 884 | 1.37e-23 | 102 |
| MS.gene37399.t1 | MTR_2g035780 | 40.411 | 146 | 79 | 1 | 25 | 162 | 443 | 588 | 5.16e-33 | 130 |
| MS.gene37399.t1 | MTR_2g035780 | 31.977 | 172 | 108 | 4 | 178 | 345 | 684 | 850 | 9.94e-22 | 97.1 |
| MS.gene37399.t1 | MTR_3g030040 | 40.411 | 146 | 79 | 1 | 25 | 162 | 492 | 637 | 1.20e-32 | 129 |
| MS.gene37399.t1 | MTR_3g030040 | 33.523 | 176 | 108 | 5 | 175 | 346 | 714 | 884 | 3.92e-24 | 103 |
| MS.gene37399.t1 | MTR_7g106680 | 40.541 | 148 | 80 | 1 | 23 | 162 | 448 | 595 | 1.88e-32 | 128 |
| MS.gene37399.t1 | MTR_7g106680 | 32.544 | 169 | 107 | 3 | 181 | 346 | 674 | 838 | 1.15e-22 | 99.8 |
| MS.gene37399.t1 | MTR_7g116230 | 30.314 | 287 | 145 | 5 | 25 | 257 | 395 | 680 | 2.94e-32 | 127 |
| MS.gene37399.t1 | MTR_8g092590 | 38.217 | 157 | 88 | 2 | 23 | 170 | 508 | 664 | 5.56e-31 | 124 |
| MS.gene37399.t1 | MTR_8g092590 | 31.844 | 179 | 107 | 4 | 175 | 346 | 733 | 903 | 4.22e-22 | 98.2 |
| MS.gene37399.t1 | MTR_3g107520 | 41.096 | 146 | 78 | 1 | 25 | 162 | 502 | 647 | 1.03e-29 | 120 |
| MS.gene37399.t1 | MTR_3g107520 | 29.070 | 172 | 115 | 3 | 178 | 346 | 725 | 892 | 9.52e-19 | 88.2 |
| MS.gene37399.t1 | MTR_3g007770 | 37.580 | 157 | 89 | 2 | 23 | 170 | 457 | 613 | 1.64e-29 | 120 |
| MS.gene37399.t1 | MTR_3g007770 | 27.746 | 173 | 110 | 3 | 181 | 346 | 688 | 852 | 1.61e-18 | 87.4 |
| MS.gene37399.t1 | MTR_2g087900 | 43.636 | 110 | 58 | 1 | 25 | 130 | 234 | 343 | 9.15e-27 | 108 |
| MS.gene37399.t1 | MTR_7g109200 | 37.584 | 149 | 92 | 1 | 25 | 173 | 597 | 744 | 1.25e-26 | 111 |
| MS.gene37399.t1 | MTR_7g109200 | 31.387 | 137 | 87 | 3 | 208 | 344 | 839 | 968 | 1.21e-13 | 72.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene37399.t1 | AT4G24000 | 36.145 | 332 | 191 | 4 | 17 | 346 | 38 | 350 | 1.56e-74 | 239 |
| MS.gene37399.t1 | AT4G24000 | 37.349 | 332 | 187 | 5 | 17 | 346 | 230 | 542 | 5.15e-73 | 240 |
| MS.gene37399.t1 | AT4G24010 | 38.554 | 332 | 178 | 5 | 24 | 346 | 238 | 552 | 2.72e-72 | 239 |
| MS.gene37399.t1 | AT4G23990 | 35.103 | 339 | 192 | 4 | 17 | 346 | 38 | 357 | 1.47e-69 | 226 |
| MS.gene37399.t1 | AT4G23990 | 35.693 | 339 | 190 | 5 | 17 | 346 | 252 | 571 | 6.12e-68 | 227 |
| MS.gene37399.t1 | AT5G17420 | 32.361 | 377 | 196 | 6 | 25 | 345 | 459 | 832 | 4.67e-60 | 208 |
| MS.gene37399.t1 | AT1G55850 | 33.642 | 324 | 185 | 4 | 28 | 346 | 250 | 548 | 1.01e-59 | 204 |
| MS.gene37399.t1 | AT2G21770 | 30.597 | 402 | 193 | 8 | 23 | 346 | 501 | 894 | 9.47e-57 | 199 |
| MS.gene37399.t1 | AT4G18780 | 31.282 | 390 | 194 | 8 | 25 | 345 | 405 | 789 | 6.25e-56 | 196 |
| MS.gene37399.t1 | AT2G32530 | 31.398 | 379 | 221 | 9 | 1 | 346 | 195 | 567 | 1.27e-51 | 182 |
| MS.gene37399.t1 | AT2G32540 | 31.152 | 382 | 218 | 10 | 1 | 346 | 195 | 567 | 8.00e-51 | 180 |
| MS.gene37399.t1 | AT2G25540 | 29.293 | 396 | 201 | 8 | 25 | 346 | 476 | 866 | 1.66e-50 | 181 |
| MS.gene37399.t1 | AT2G32620 | 30.928 | 388 | 210 | 12 | 1 | 346 | 195 | 566 | 2.62e-50 | 177 |
| MS.gene37399.t1 | AT2G32620 | 30.928 | 388 | 210 | 12 | 1 | 346 | 99 | 470 | 5.94e-50 | 177 |
| MS.gene37399.t1 | AT2G32620 | 32.222 | 360 | 202 | 11 | 1 | 328 | 195 | 544 | 7.10e-50 | 175 |
| MS.gene37399.t1 | AT2G32620 | 30.928 | 388 | 210 | 12 | 1 | 346 | 195 | 566 | 1.64e-49 | 177 |
| MS.gene37399.t1 | AT2G32610 | 30.412 | 388 | 212 | 9 | 1 | 346 | 196 | 567 | 1.26e-48 | 174 |
| MS.gene37399.t1 | AT4G15320 | 30.423 | 378 | 223 | 11 | 1 | 346 | 195 | 564 | 1.23e-46 | 169 |
| MS.gene37399.t1 | AT4G15320 | 30.423 | 378 | 223 | 11 | 1 | 346 | 195 | 564 | 1.39e-46 | 169 |
| MS.gene37399.t1 | AT4G15320 | 30.423 | 378 | 223 | 11 | 1 | 346 | 210 | 579 | 1.70e-46 | 168 |
| MS.gene37399.t1 | AT4G15290 | 30.871 | 379 | 221 | 11 | 1 | 346 | 195 | 565 | 1.07e-45 | 166 |
| MS.gene37399.t1 | AT4G38190 | 28.453 | 362 | 212 | 8 | 22 | 344 | 552 | 905 | 6.22e-43 | 159 |
| MS.gene37399.t1 | AT3G03050 | 28.763 | 372 | 201 | 10 | 29 | 344 | 581 | 944 | 3.30e-42 | 157 |
| MS.gene37399.t1 | AT1G02730 | 28.906 | 384 | 201 | 10 | 25 | 344 | 605 | 980 | 9.66e-42 | 155 |
| MS.gene37399.t1 | AT5G16910 | 28.184 | 369 | 204 | 10 | 29 | 344 | 584 | 944 | 8.79e-41 | 153 |
| MS.gene37399.t1 | AT1G32180 | 28.333 | 360 | 196 | 7 | 39 | 344 | 428 | 779 | 4.38e-40 | 150 |
| MS.gene37399.t1 | AT1G32180 | 28.333 | 360 | 196 | 7 | 39 | 344 | 428 | 779 | 4.38e-40 | 150 |
| MS.gene37399.t1 | AT2G33100 | 26.593 | 361 | 205 | 6 | 38 | 340 | 481 | 839 | 7.50e-40 | 150 |
| MS.gene37399.t1 | AT2G33100 | 26.593 | 361 | 205 | 6 | 38 | 340 | 481 | 839 | 7.50e-40 | 150 |
| MS.gene37399.t1 | AT4G15320 | 28.205 | 390 | 205 | 10 | 24 | 346 | 229 | 610 | 4.80e-39 | 147 |
| MS.gene37399.t1 | AT4G15320 | 28.877 | 374 | 198 | 9 | 33 | 346 | 288 | 653 | 2.03e-38 | 145 |
| MS.gene37399.t1 | AT5G09870 | 42.675 | 157 | 81 | 2 | 23 | 170 | 483 | 639 | 1.78e-35 | 137 |
| MS.gene37399.t1 | AT5G09870 | 32.402 | 179 | 106 | 3 | 175 | 346 | 706 | 876 | 5.36e-23 | 100 |
| MS.gene37399.t1 | AT5G64740 | 42.038 | 157 | 82 | 2 | 23 | 170 | 495 | 651 | 4.35e-35 | 136 |
| MS.gene37399.t1 | AT5G64740 | 31.285 | 179 | 108 | 4 | 175 | 346 | 721 | 891 | 2.67e-22 | 98.6 |
| MS.gene37399.t1 | AT4G39350 | 41.892 | 148 | 78 | 1 | 23 | 162 | 496 | 643 | 1.24e-33 | 132 |
| MS.gene37399.t1 | AT4G39350 | 31.285 | 179 | 108 | 4 | 175 | 346 | 720 | 890 | 1.57e-22 | 99.4 |
| MS.gene37399.t1 | AT5G05170 | 39.726 | 146 | 80 | 1 | 25 | 162 | 480 | 625 | 9.89e-32 | 126 |
| MS.gene37399.t1 | AT5G05170 | 30.693 | 202 | 122 | 7 | 149 | 346 | 684 | 871 | 1.28e-22 | 99.8 |
| MS.gene37399.t1 | AT5G44030 | 39.726 | 146 | 80 | 1 | 25 | 162 | 157 | 302 | 1.06e-30 | 123 |
| MS.gene37399.t1 | AT5G44030 | 32.759 | 174 | 108 | 4 | 176 | 345 | 406 | 574 | 3.03e-22 | 98.6 |
| MS.gene37399.t1 | AT5G44030 | 39.726 | 146 | 80 | 1 | 25 | 162 | 465 | 610 | 1.46e-30 | 123 |
| MS.gene37399.t1 | AT5G44030 | 32.759 | 174 | 108 | 4 | 176 | 345 | 714 | 882 | 2.42e-22 | 99.0 |
| MS.gene37399.t1 | AT5G44030 | 39.726 | 146 | 80 | 1 | 25 | 162 | 436 | 581 | 1.53e-30 | 123 |
| MS.gene37399.t1 | AT5G44030 | 32.759 | 174 | 108 | 4 | 176 | 345 | 685 | 853 | 2.57e-22 | 99.0 |
| MS.gene37399.t1 | AT4G32410 | 40.411 | 146 | 79 | 1 | 25 | 162 | 496 | 641 | 3.22e-30 | 122 |
| MS.gene37399.t1 | AT4G32410 | 29.143 | 175 | 115 | 4 | 176 | 346 | 717 | 886 | 1.19e-18 | 87.8 |
Find 76 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATTACAGCTTAGGGTTTC+AGG | 0.132827 | 3.4:+37020898 | MS.gene37399:intron |
| GCAAGATCTTTGGAGGTTTC+AGG | 0.182973 | 3.4:-37021018 | None:intergenic |
| CAATCTAAGACAAGTAAATA+AGG | 0.260314 | 3.4:-37020937 | None:intergenic |
| CCAGTTTGTGTTACTTTCAT+AGG | 0.261272 | 3.4:-37036249 | None:intergenic |
| CCTATTGCCTACACACTATA+TGG | 0.290267 | 3.4:+37041160 | MS.gene37399:CDS |
| AGTAGAAGTGCATTACTCTT+TGG | 0.327163 | 3.4:+37021276 | MS.gene37399:CDS |
| AAAGGTTAGACAATGAATAA+TGG | 0.332845 | 3.4:-37041110 | None:intergenic |
| TTGGACAAAAGCAAGATCTT+TGG | 0.335103 | 3.4:-37021028 | None:intergenic |
| TGTGGAACATTTGAGGGAAT+TGG | 0.337598 | 3.4:-37021047 | None:intergenic |
| GTGTGTAGGCAATAGGATAT+TGG | 0.352224 | 3.4:-37041153 | None:intergenic |
| AAACTTGAGAGTACCGTTAC+TGG | 0.362985 | 3.4:+37040905 | MS.gene37399:CDS |
| AATATAGCCCATTCACTTAC+GGG | 0.364012 | 3.4:+37041074 | MS.gene37399:CDS |
| CTTAATGCCGAAACCAACTA+TGG | 0.371003 | 3.4:+37036113 | MS.gene37399:CDS |
| TTTGGAAGTCCAAAACAAAA+AGG | 0.371272 | 3.4:+37021294 | MS.gene37399:CDS |
| AGACTTGCCATAGTTGGTTT+CGG | 0.383586 | 3.4:-37036120 | None:intergenic |
| CCATATAGTGTGTAGGCAAT+AGG | 0.386423 | 3.4:-37041160 | None:intergenic |
| AAGGTTAGACAATGAATAAT+GGG | 0.392893 | 3.4:-37041109 | None:intergenic |
| ATCTTCGTGTGGTGAATGAT+AGG | 0.398588 | 3.4:+37020304 | MS.gene37399:CDS |
| CCTATGAAAGTAACACAAAC+TGG | 0.407291 | 3.4:+37036249 | MS.gene37399:CDS |
| TGTGTAGGCAATAGGATATT+GGG | 0.407784 | 3.4:-37041152 | None:intergenic |
| TATCTTTCTTGCTGAGGTTG+TGG | 0.415505 | 3.4:-37021065 | None:intergenic |
| AAATATAGCCCATTCACTTA+CGG | 0.428766 | 3.4:+37041073 | MS.gene37399:CDS |
| CATAGCAGACTTGCCATAGT+TGG | 0.435654 | 3.4:-37036126 | None:intergenic |
| GAAAGATATATATGATAGTC+AGG | 0.437126 | 3.4:+37021080 | MS.gene37399:CDS |
| GATTACAGCTTAGGGTTTCA+GGG | 0.439711 | 3.4:+37020899 | MS.gene37399:intron |
| TTGTATCTATGAGGAACATA+TGG | 0.444562 | 3.4:-37020745 | None:intergenic |
| CCTCAGATTTGCTTCTTGAA+AGG | 0.449878 | 3.4:+37041190 | MS.gene37399:CDS |
| ACATCTGAACTTCTCTTGCT+TGG | 0.451840 | 3.4:+37041043 | MS.gene37399:CDS |
| ACCTCCATCCTCTGCAATGA+AGG | 0.452138 | 3.4:-37040934 | None:intergenic |
| CTTGAAATCCCGTAAGTGAA+TGG | 0.463902 | 3.4:-37041082 | None:intergenic |
| CTGAGGTTGTGGAACATTTG+AGG | 0.465490 | 3.4:-37021054 | None:intergenic |
| AATCTAAGACAAGTAAATAA+GGG | 0.470736 | 3.4:-37020936 | None:intergenic |
| GAAGATCATTAATGACGAAA+AGG | 0.471278 | 3.4:+37020684 | MS.gene37399:intron |
| TTGAAATCCCGTAAGTGAAT+GGG | 0.480525 | 3.4:-37041081 | None:intergenic |
| ACCTCCTTCATTGCAGAGGA+TGG | 0.492040 | 3.4:+37040930 | MS.gene37399:CDS |
| GACAAAAGCAAGATCTTTGG+AGG | 0.493169 | 3.4:-37021025 | None:intergenic |
| TGATAGGCCTTCTCTTATTG+AGG | 0.493986 | 3.4:+37020320 | MS.gene37399:CDS |
| GATTGCTTCAGTTGGTAAAG+TGG | 0.503160 | 3.4:+37041020 | MS.gene37399:CDS |
| AGGAATTTCTGTATTTCCAA+AGG | 0.511930 | 3.4:+37041210 | MS.gene37399:CDS |
| CATATATATCTTTCTTGCTG+AGG | 0.513706 | 3.4:-37021071 | None:intergenic |
| TGAGGTTGTGGAACATTTGA+GGG | 0.514296 | 3.4:-37021053 | None:intergenic |
| ATGGATGGATTAAGAGGTCC+AGG | 0.518984 | 3.4:+37021228 | MS.gene37399:CDS |
| ACAAGGTGGAAAGGAATGGA+TGG | 0.522363 | 3.4:+37021213 | MS.gene37399:CDS |
| TTAAGAGGTCCAGGTCTCAC+TGG | 0.525833 | 3.4:+37021237 | MS.gene37399:CDS |
| GCTCCTCCTTTGTATCTATG+AGG | 0.526763 | 3.4:-37020754 | None:intergenic |
| GGTCCAGGTCTCACTGGCAG+TGG | 0.527591 | 3.4:+37021243 | MS.gene37399:CDS |
| TGTGGTTGTGAAGTAGCAAA+AGG | 0.531218 | 3.4:-37041128 | None:intergenic |
| TTCTATTAGACAAGGTGGAA+AGG | 0.538567 | 3.4:+37021204 | MS.gene37399:intron |
| TTAGACAAGGTGGAAAGGAA+TGG | 0.550173 | 3.4:+37021209 | MS.gene37399:intron |
| CAATCCCTCTTTCATGTCAG+TGG | 0.552279 | 3.4:-37041002 | None:intergenic |
| GGCAATAGGATATTGGGTTG+TGG | 0.558911 | 3.4:-37041146 | None:intergenic |
| TTTCCACTGCCAGTGAGACC+TGG | 0.561449 | 3.4:-37021246 | None:intergenic |
| GTCATTTCTATTAGACAAGG+TGG | 0.561819 | 3.4:+37021199 | MS.gene37399:intron |
| TGCACCCACTGACATGAAAG+AGG | 0.566701 | 3.4:+37040997 | MS.gene37399:CDS |
| GAAAGAGGGATTGCTTCAGT+TGG | 0.598558 | 3.4:+37041012 | MS.gene37399:CDS |
| AATCCCTCTTTCATGTCAGT+GGG | 0.600324 | 3.4:-37041001 | None:intergenic |
| AATGATTCCATATAGTGTGT+AGG | 0.600717 | 3.4:-37041167 | None:intergenic |
| TGACGAAAAGGAAATGCCAC+TGG | 0.604632 | 3.4:+37020696 | MS.gene37399:CDS |
| GGCTACCTCCTTCATTGCAG+AGG | 0.605797 | 3.4:+37040926 | MS.gene37399:CDS |
| TATGTTCCTCATAGATACAA+AGG | 0.607561 | 3.4:+37020748 | MS.gene37399:CDS |
| AAAGGAATGGATGGATTAAG+AGG | 0.618466 | 3.4:+37021222 | MS.gene37399:CDS |
| TTTACAAGAAGCGAGTGTAG+TGG | 0.619981 | 3.4:+37036217 | MS.gene37399:CDS |
| ATGAAGGAGGTAGCCAGTAA+CGG | 0.622292 | 3.4:-37040918 | None:intergenic |
| AGGGGTACCTCAATAAGAGA+AGG | 0.625818 | 3.4:-37020327 | None:intergenic |
| ATATATATGATAGTCAGGCT+AGG | 0.626693 | 3.4:+37021085 | MS.gene37399:CDS |
| CCTTTCAAGAAGCAAATCTG+AGG | 0.627942 | 3.4:-37041190 | None:intergenic |
| TCCATCCTCTGCAATGAAGG+AGG | 0.634394 | 3.4:-37040931 | None:intergenic |
| AGGAGGAGCACTCAATACAT+TGG | 0.635787 | 3.4:+37020768 | MS.gene37399:CDS |
| GAGTCACTGAAAGCAATATG+TGG | 0.636647 | 3.4:+37036155 | MS.gene37399:CDS |
| GTTTCAGGGCTAATCAGCAA+TGG | 0.643883 | 3.4:+37020913 | MS.gene37399:CDS |
| TCCTTCATTGCAGAGGATGG+AGG | 0.645824 | 3.4:+37040933 | MS.gene37399:CDS |
| GCACCCACTGACATGAAAGA+GGG | 0.658795 | 3.4:+37040998 | MS.gene37399:CDS |
| CGAGACACATAAACAACCAG+TGG | 0.668168 | 3.4:-37020712 | None:intergenic |
| GGTGCACATCCTAAGAAACA+TGG | 0.692331 | 3.4:-37040980 | None:intergenic |
| TAACACAAACTGGAGTACTG+AGG | 0.700667 | 3.4:+37036259 | MS.gene37399:CDS |
| GTTCCTCATAGATACAAAGG+AGG | 0.702078 | 3.4:+37020751 | MS.gene37399:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.4 | gene | 37020249 | 37041231 | 37020249 | ID=MS.gene37399 |
| chr3.4 | mRNA | 37020249 | 37041231 | 37020249 | ID=MS.gene37399.t1;Parent=MS.gene37399 |
| chr3.4 | exon | 37020249 | 37020341 | 37020249 | ID=MS.gene37399.t1.exon1;Parent=MS.gene37399.t1 |
| chr3.4 | CDS | 37020249 | 37020341 | 37020249 | ID=cds.MS.gene37399.t1;Parent=MS.gene37399.t1 |
| chr3.4 | exon | 37020688 | 37020789 | 37020688 | ID=MS.gene37399.t1.exon2;Parent=MS.gene37399.t1 |
| chr3.4 | CDS | 37020688 | 37020789 | 37020688 | ID=cds.MS.gene37399.t1;Parent=MS.gene37399.t1 |
| chr3.4 | exon | 37020907 | 37021119 | 37020907 | ID=MS.gene37399.t1.exon3;Parent=MS.gene37399.t1 |
| chr3.4 | CDS | 37020907 | 37021119 | 37020907 | ID=cds.MS.gene37399.t1;Parent=MS.gene37399.t1 |
| chr3.4 | exon | 37021213 | 37021315 | 37021213 | ID=MS.gene37399.t1.exon4;Parent=MS.gene37399.t1 |
| chr3.4 | CDS | 37021213 | 37021315 | 37021213 | ID=cds.MS.gene37399.t1;Parent=MS.gene37399.t1 |
| chr3.4 | exon | 37036102 | 37036280 | 37036102 | ID=MS.gene37399.t1.exon5;Parent=MS.gene37399.t1 |
| chr3.4 | CDS | 37036102 | 37036280 | 37036102 | ID=cds.MS.gene37399.t1;Parent=MS.gene37399.t1 |
| chr3.4 | exon | 37040884 | 37041231 | 37040884 | ID=MS.gene37399.t1.exon6;Parent=MS.gene37399.t1 |
| chr3.4 | CDS | 37040884 | 37041231 | 37040884 | ID=cds.MS.gene37399.t1;Parent=MS.gene37399.t1 |
| Gene Sequence |
| Protein sequence |
