Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39217.t1 | KEH41788.1 | 94.9 | 177 | 9 | 0 | 21 | 197 | 1 | 177 | 5.20E-90 | 340.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39217.t1 | Q8L4N1 | 28.2 | 181 | 104 | 5 | 22 | 192 | 44 | 208 | 1.7e-12 | 74.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39217.t1 | A0A072VK27 | 94.9 | 177 | 9 | 0 | 21 | 197 | 1 | 177 | 3.7e-90 | 340.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052224 | MS.gene39217 | -0.82014 | 8.03E-53 | -1.69E-46 |
| MS.gene053294 | MS.gene39217 | 0.803878 | 2.83E-49 | -1.69E-46 |
| MS.gene053401 | MS.gene39217 | 0.867816 | 1.04E-65 | -1.69E-46 |
| MS.gene05548 | MS.gene39217 | 0.800797 | 1.22E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene39217 | MS.gene010109 | PPI |
| MS.gene39217 | MS.gene26154 | PPI |
| MS.gene39217 | MS.gene050004 | PPI |
| MS.gene39217 | MS.gene017358 | PPI |
| MS.gene39217 | MS.gene063633 | PPI |
| MS.gene39217 | MS.gene009525 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39217.t1 | MTR_1g054765 | 94.915 | 177 | 9 | 0 | 21 | 197 | 1 | 177 | 7.48e-128 | 357 |
| MS.gene39217.t1 | MTR_1g054750 | 80.203 | 197 | 32 | 5 | 1 | 197 | 1 | 190 | 3.34e-110 | 313 |
| MS.gene39217.t1 | MTR_1g083950 | 38.547 | 179 | 87 | 4 | 13 | 191 | 3 | 158 | 1.80e-34 | 120 |
| MS.gene39217.t1 | MTR_1g088640 | 38.251 | 183 | 95 | 4 | 13 | 194 | 2 | 167 | 1.43e-33 | 117 |
| MS.gene39217.t1 | MTR_1g088640 | 38.251 | 183 | 92 | 4 | 13 | 194 | 2 | 164 | 1.50e-33 | 117 |
| MS.gene39217.t1 | MTR_1g087200 | 37.853 | 177 | 87 | 6 | 17 | 190 | 2 | 158 | 6.26e-32 | 113 |
| MS.gene39217.t1 | MTR_5g065980 | 36.471 | 170 | 91 | 6 | 25 | 188 | 10 | 168 | 7.41e-30 | 108 |
| MS.gene39217.t1 | MTR_5g065980 | 36.628 | 172 | 90 | 7 | 25 | 188 | 10 | 170 | 1.28e-28 | 105 |
| MS.gene39217.t1 | MTR_7g108830 | 35.057 | 174 | 94 | 4 | 22 | 194 | 7 | 162 | 1.27e-23 | 92.4 |
| MS.gene39217.t1 | MTR_8g058620 | 35.057 | 174 | 94 | 4 | 22 | 194 | 7 | 162 | 1.27e-23 | 92.4 |
| MS.gene39217.t1 | MTR_4g064933 | 32.530 | 166 | 97 | 3 | 24 | 188 | 6 | 157 | 2.28e-19 | 81.3 |
| MS.gene39217.t1 | MTR_2g089350 | 29.609 | 179 | 101 | 4 | 24 | 194 | 26 | 187 | 8.41e-19 | 81.3 |
| MS.gene39217.t1 | MTR_1g088620 | 51.613 | 62 | 30 | 0 | 133 | 194 | 225 | 286 | 3.21e-17 | 77.8 |
| MS.gene39217.t1 | MTR_5g077130 | 29.688 | 192 | 84 | 7 | 25 | 197 | 7 | 166 | 7.89e-17 | 74.7 |
| MS.gene39217.t1 | MTR_2g034200 | 31.034 | 174 | 101 | 4 | 24 | 194 | 6 | 163 | 1.56e-16 | 73.6 |
| MS.gene39217.t1 | MTR_5g065980 | 32.000 | 150 | 85 | 6 | 25 | 168 | 10 | 148 | 1.82e-16 | 74.3 |
| MS.gene39217.t1 | MTR_5g077130 | 30.208 | 192 | 84 | 7 | 25 | 197 | 7 | 167 | 2.23e-16 | 73.6 |
| MS.gene39217.t1 | MTR_4g019800 | 30.723 | 166 | 94 | 4 | 27 | 188 | 9 | 157 | 3.12e-15 | 70.5 |
| MS.gene39217.t1 | MTR_6g006190 | 31.034 | 87 | 60 | 0 | 102 | 188 | 76 | 162 | 5.44e-15 | 70.1 |
| MS.gene39217.t1 | MTR_6g006190 | 31.034 | 87 | 60 | 0 | 102 | 188 | 52 | 138 | 6.14e-15 | 69.3 |
| MS.gene39217.t1 | MTR_7g065770 | 28.743 | 167 | 102 | 4 | 24 | 188 | 6 | 157 | 1.56e-13 | 65.9 |
| MS.gene39217.t1 | MTR_1717s0010 | 28.655 | 171 | 93 | 8 | 22 | 175 | 41 | 199 | 4.65e-11 | 60.5 |
| MS.gene39217.t1 | MTR_1527s0010 | 28.655 | 171 | 93 | 8 | 22 | 175 | 41 | 199 | 4.65e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene39217.t1 | AT3G11930 | 56.395 | 172 | 69 | 3 | 24 | 195 | 34 | 199 | 1.94e-67 | 205 |
| MS.gene39217.t1 | AT3G11930 | 55.233 | 172 | 72 | 2 | 24 | 195 | 34 | 200 | 1.17e-66 | 203 |
| MS.gene39217.t1 | AT3G11930 | 56.322 | 174 | 68 | 4 | 24 | 195 | 34 | 201 | 3.42e-66 | 202 |
| MS.gene39217.t1 | AT3G11930 | 47.980 | 198 | 72 | 3 | 24 | 195 | 34 | 226 | 1.81e-60 | 188 |
| MS.gene39217.t1 | AT3G58450 | 51.786 | 168 | 74 | 3 | 25 | 192 | 32 | 192 | 1.28e-54 | 172 |
| MS.gene39217.t1 | AT3G58450 | 50.595 | 168 | 69 | 3 | 25 | 192 | 32 | 185 | 6.83e-53 | 168 |
| MS.gene39217.t1 | AT1G09740 | 36.416 | 173 | 91 | 4 | 25 | 192 | 10 | 168 | 3.11e-31 | 112 |
| MS.gene39217.t1 | AT1G09740 | 36.416 | 173 | 91 | 4 | 25 | 192 | 10 | 168 | 3.11e-31 | 112 |
| MS.gene39217.t1 | AT2G47710 | 34.503 | 171 | 93 | 4 | 22 | 191 | 7 | 159 | 3.00e-29 | 106 |
| MS.gene39217.t1 | AT3G62550 | 35.928 | 167 | 87 | 4 | 24 | 188 | 8 | 156 | 5.49e-29 | 106 |
| MS.gene39217.t1 | AT1G68300 | 33.714 | 175 | 96 | 3 | 15 | 188 | 2 | 157 | 8.26e-26 | 97.8 |
| MS.gene39217.t1 | AT3G01520 | 30.851 | 94 | 65 | 0 | 95 | 188 | 69 | 162 | 1.69e-16 | 73.9 |
| MS.gene39217.t1 | AT3G03270 | 31.148 | 183 | 75 | 5 | 25 | 188 | 7 | 157 | 2.21e-16 | 73.2 |
| MS.gene39217.t1 | AT5G14680 | 30.851 | 94 | 65 | 0 | 95 | 188 | 69 | 162 | 6.65e-16 | 72.4 |
| MS.gene39217.t1 | AT1G11360 | 28.090 | 178 | 104 | 5 | 22 | 192 | 37 | 197 | 3.91e-15 | 71.6 |
| MS.gene39217.t1 | AT1G11360 | 28.090 | 178 | 104 | 5 | 22 | 192 | 37 | 197 | 3.91e-15 | 71.6 |
| MS.gene39217.t1 | AT1G11360 | 28.090 | 178 | 104 | 5 | 22 | 192 | 37 | 197 | 3.91e-15 | 71.6 |
| MS.gene39217.t1 | AT1G11360 | 28.090 | 178 | 104 | 5 | 22 | 192 | 37 | 197 | 3.91e-15 | 71.6 |
| MS.gene39217.t1 | AT3G17020 | 30.508 | 177 | 87 | 6 | 24 | 188 | 8 | 160 | 7.31e-15 | 69.3 |
| MS.gene39217.t1 | AT3G53990 | 29.070 | 172 | 95 | 6 | 27 | 191 | 9 | 160 | 1.34e-13 | 65.9 |
Find 53 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGTTATGGCTACTGATACTA+TGG | 0.183037 | 1.2:-43160570 | MS.gene39217:CDS |
| GCAGAAAGTGTGATTCTTAA+TGG | 0.228368 | 1.2:-43158634 | MS.gene39217:CDS |
| TATGCATAAGTGTGGAAATT+TGG | 0.264690 | 1.2:+43160494 | None:intergenic |
| TTCAAAGAATCTGCAACTTC+AGG | 0.297788 | 1.2:+43160054 | None:intergenic |
| CCAGCTGGTCCCATAGGTAT+AGG | 0.340250 | 1.2:+43160470 | None:intergenic |
| CTTCTGCACCTCCCCTCACT+TGG | 0.373335 | 1.2:+43160687 | None:intergenic |
| TGATAACCTCTTCAACGTTA+TGG | 0.381044 | 1.2:-43160585 | MS.gene39217:CDS |
| GCAAGTTGATCTCTTAATCA+TGG | 0.412365 | 1.2:-43158572 | MS.gene39217:CDS |
| CAGCTGGTCCCATAGGTATA+GGG | 0.428625 | 1.2:+43160471 | None:intergenic |
| TCTGCAACTTCAGGTGTTGA+TGG | 0.429179 | 1.2:+43160063 | None:intergenic |
| ATCATGGGTAGTCGTGGCCT+TGG | 0.451807 | 1.2:-43158556 | MS.gene39217:CDS |
| CCTATGGGACCAGCTGGTAT+TGG | 0.470932 | 1.2:-43160464 | MS.gene39217:intron |
| TTATGCATACCCTATACCTA+TGG | 0.478213 | 1.2:-43160480 | MS.gene39217:CDS |
| ATCTGCAGCTATTGCCTCAC+GGG | 0.482712 | 1.2:-43160013 | MS.gene39217:CDS |
| TGCAAGAGAAATGATTTGTC+AGG | 0.490363 | 1.2:-43158608 | MS.gene39217:CDS |
| GAAGCTTGTATGCTCTTAAG+TGG | 0.498753 | 1.2:-43160613 | MS.gene39217:CDS |
| GTGGCCTTGGCAAACTCAAA+AGG | 0.501962 | 1.2:-43158543 | MS.gene39217:intron |
| GGTGGCTTCACAATGAGAAT+AGG | 0.504003 | 1.2:+43158355 | None:intergenic |
| TTTGGTGGCAGAGCATTCCT+TGG | 0.514690 | 1.2:-43158415 | MS.gene39217:intron |
| CCAATACCAGCTGGTCCCAT+AGG | 0.522576 | 1.2:+43160464 | None:intergenic |
| AAAGAGAAGGATGAAGATGA+AGG | 0.523647 | 1.2:-43160663 | MS.gene39217:CDS |
| TAACGTTGAAGAGGTTATCA+AGG | 0.523668 | 1.2:+43160588 | None:intergenic |
| ATCTGAAAATGAGGAGGGGA+TGG | 0.523730 | 1.2:-43160537 | MS.gene39217:CDS |
| AAAAGGGTGATGGAGGAAGT+AGG | 0.524919 | 1.2:-43160722 | None:intergenic |
| GCAAATGTGCAAGGACAAGC+AGG | 0.531005 | 1.2:-43159986 | MS.gene39217:intron |
| CTCTTAATCATGGGTAGTCG+TGG | 0.541714 | 1.2:-43158562 | MS.gene39217:CDS |
| AATAGTCACTTACACTTCCA+AGG | 0.548894 | 1.2:+43158398 | None:intergenic |
| TGGAACAACATCTGAAAATG+AGG | 0.557443 | 1.2:-43160546 | MS.gene39217:CDS |
| ATGGCTACTGATACTATGGA+TGG | 0.557940 | 1.2:-43160566 | MS.gene39217:CDS |
| CAAGTTGATCTCTTAATCAT+GGG | 0.558572 | 1.2:-43158571 | MS.gene39217:CDS |
| CAGTAGCCATAACGTTGAAG+AGG | 0.571035 | 1.2:+43160579 | None:intergenic |
| CCTATACCTATGGGACCAGC+TGG | 0.573743 | 1.2:-43160470 | MS.gene39217:CDS |
| GTGGAAGTGTTGACCAAGTG+AGG | 0.578339 | 1.2:-43160700 | MS.gene39217:CDS |
| TGGAAGTGTTGACCAAGTGA+GGG | 0.581251 | 1.2:-43160699 | MS.gene39217:CDS |
| GAGGTGCAGAAGAAAAGAGA+AGG | 0.584561 | 1.2:-43160676 | MS.gene39217:CDS |
| TATGCATACCCTATACCTAT+GGG | 0.588273 | 1.2:-43160479 | MS.gene39217:CDS |
| AATCTGCAGCTATTGCCTCA+CGG | 0.590946 | 1.2:-43160014 | MS.gene39217:CDS |
| GTATAGGGTATGCATAAGTG+TGG | 0.596401 | 1.2:+43160486 | None:intergenic |
| ACGGGCTTTGCAAATGTGCA+AGG | 0.602324 | 1.2:-43159995 | MS.gene39217:CDS |
| GATGAAGATGAAGGTGATGG+TGG | 0.605709 | 1.2:-43160654 | MS.gene39217:CDS |
| ATATACTAACCAATACCAGC+TGG | 0.608648 | 1.2:+43160455 | None:intergenic |
| ACAACATCTGAAAATGAGGA+GGG | 0.619877 | 1.2:-43160542 | MS.gene39217:CDS |
| AACAACATCTGAAAATGAGG+AGG | 0.624375 | 1.2:-43160543 | MS.gene39217:CDS |
| AACGTTGAAGAGGTTATCAA+GGG | 0.625008 | 1.2:+43160589 | None:intergenic |
| AGGGTGATGGAGGAAGTAGG+TGG | 0.640246 | 1.2:-43160719 | None:intergenic |
| AAGGATGAAGATGAAGGTGA+TGG | 0.645453 | 1.2:-43160657 | MS.gene39217:CDS |
| AAGCTTGTATGCTCTTAAGT+GGG | 0.653871 | 1.2:-43160612 | MS.gene39217:CDS |
| GTGGCAATAGATGAGAGTGA+TGG | 0.658459 | 1.2:-43160635 | MS.gene39217:CDS |
| CAACATCTGAAAATGAGGAG+GGG | 0.662503 | 1.2:-43160541 | MS.gene39217:CDS |
| GCACATTTGCAAAGCCCGTG+AGG | 0.665936 | 1.2:+43159999 | None:intergenic |
| GGAAGTGTTGACCAAGTGAG+GGG | 0.668841 | 1.2:-43160698 | MS.gene39217:CDS |
| TCTCATTGTGAAGCCACCAG+AGG | 0.677993 | 1.2:-43158350 | MS.gene39217:CDS |
| AGTGTTGACCAAGTGAGGGG+AGG | 0.708592 | 1.2:-43160695 | MS.gene39217:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTAACTATTTTTTTTTTAT+TGG | - | chr1.2:43159753-43159772 | MS.gene39217:intron | 10.0% |
| !!! | TCTTTTTTTTTTTTTTTTTG+AGG | - | chr1.2:43159996-43160015 | MS.gene39217:CDS | 10.0% |
| !! | AAATAATGACATTAATGAAT+AGG | + | chr1.2:43159365-43159384 | None:intergenic | 15.0% |
| !! | AATAGGATAAATTAAATGAA+GGG | + | chr1.2:43159348-43159367 | None:intergenic | 15.0% |
| !!! | AACTAAAATATTTTCTTTGA+CGG | - | chr1.2:43159908-43159927 | MS.gene39217:intron | 15.0% |
| !!! | CTAGATTTTTTTTTTTTTGA+AGG | + | chr1.2:43160266-43160285 | None:intergenic | 15.0% |
| !!! | CTCATGATTTTTTTTTTTTA+GGG | - | chr1.2:43159566-43159585 | MS.gene39217:intron | 15.0% |
| !!! | GTTCTAATATTTTTTACATT+TGG | - | chr1.2:43160610-43160629 | MS.gene39217:CDS | 15.0% |
| !!! | TAAATTATGGCTTTTAAATT+TGG | - | chr1.2:43160319-43160338 | MS.gene39217:intron | 15.0% |
| !!! | TCTAGTTTTTAATAGATAAA+AGG | + | chr1.2:43158648-43158667 | None:intergenic | 15.0% |
| !!! | TCTCATGATTTTTTTTTTTT+AGG | - | chr1.2:43159565-43159584 | MS.gene39217:intron | 15.0% |
| !!! | TTGTATTTATTTTAGTATAG+AGG | + | chr1.2:43159321-43159340 | None:intergenic | 15.0% |
| !! | AAAAATGATGTAACTTTGTA+AGG | - | chr1.2:43158751-43158770 | MS.gene39217:intron | 20.0% |
| !! | ATTCATGATACAAAAATGAA+AGG | + | chr1.2:43159635-43159654 | None:intergenic | 20.0% |
| !! | GAATAGGATAAATTAAATGA+AGG | + | chr1.2:43159349-43159368 | None:intergenic | 20.0% |
| !! | TCTATTAAAAACTAGAACAA+TGG | - | chr1.2:43158652-43158671 | MS.gene39217:intron | 20.0% |
| !! | TTCATGATATACAGAAAATA+GGG | - | chr1.2:43159232-43159251 | MS.gene39217:intron | 20.0% |
| !! | TTTCATGATATACAGAAAAT+AGG | - | chr1.2:43159231-43159250 | MS.gene39217:intron | 20.0% |
| !!! | ATTTTGATTTCATTTATGCA+TGG | - | chr1.2:43160581-43160600 | MS.gene39217:CDS | 20.0% |
| !!! | CTAATATTTTTTACATTTGG+TGG | - | chr1.2:43160613-43160632 | MS.gene39217:CDS | 20.0% |
| !!! | TGAATCACACTTTTTTTTTA+TGG | - | chr1.2:43159650-43159669 | MS.gene39217:intron | 20.0% |
| !!! | TTAATATTGTCCATTTTTCT+TGG | - | chr1.2:43158781-43158800 | MS.gene39217:intron | 20.0% |
| ! | AATTATGAGAGAATTAGACA+TGG | + | chr1.2:43158728-43158747 | None:intergenic | 25.0% |
| ! | AATTTCCCATTCATTTGTAT+TGG | + | chr1.2:43159180-43159199 | None:intergenic | 25.0% |
| ! | ATTTCCCATTCATTTGTATT+GGG | + | chr1.2:43159179-43159198 | None:intergenic | 25.0% |
| ! | TCATGATATACAGAAAATAG+GGG | - | chr1.2:43159233-43159252 | MS.gene39217:intron | 25.0% |
| ! | TGTTTCGAATTTCAATTATC+TGG | + | chr1.2:43159414-43159433 | None:intergenic | 25.0% |
| ! | TTCTCGTAGACAATATAATT+TGG | + | chr1.2:43159529-43159548 | None:intergenic | 25.0% |
| !! | TATAGGTTGAGCAATTATAT+AGG | - | chr1.2:43159815-43159834 | MS.gene39217:intron | 25.0% |
| !!! | AAAGGAAGATGATTACTTTT+TGG | + | chr1.2:43159260-43159279 | None:intergenic | 25.0% |
| !!! | GTGATGATGTTTTAAAAACT+CGG | - | chr1.2:43160285-43160304 | MS.gene39217:intron | 25.0% |
| ATGATGTAACTTTGTAAGGT+TGG | - | chr1.2:43158755-43158774 | MS.gene39217:intron | 30.0% | |
| ATGCATACTTTCATTGGATT+TGG | + | chr1.2:43160369-43160388 | None:intergenic | 30.0% | |
| ATGGATAAAAAGCTGTTGAA+AGG | + | chr1.2:43158964-43158983 | None:intergenic | 30.0% | |
| CAGGATAGTAGTAAAATCAA+TGG | - | chr1.2:43159450-43159469 | MS.gene39217:intron | 30.0% | |
| CATGATATACAGAAAATAGG+GGG | - | chr1.2:43159234-43159253 | MS.gene39217:intron | 30.0% | |
| CTTAACTTACACAGATGTAT+CGG | + | chr1.2:43158862-43158881 | None:intergenic | 30.0% | |
| CTTACGTTACGTTCTTATAT+AGG | - | chr1.2:43159798-43159817 | MS.gene39217:intron | 30.0% | |
| GGTAGATGCTACATAAATTA+TGG | - | chr1.2:43160306-43160325 | MS.gene39217:intron | 30.0% | |
| TATGCATAAGTGTGGAAATT+TGG | + | chr1.2:43158552-43158571 | None:intergenic | 30.0% | |
| TCATTGATGCATACTTTCAT+TGG | + | chr1.2:43160375-43160394 | None:intergenic | 30.0% | |
| TCTATTCCAAATCATGAGAT+TGG | + | chr1.2:43159594-43159613 | None:intergenic | 30.0% | |
| TTAACTTACACAGATGTATC+GGG | + | chr1.2:43158861-43158880 | None:intergenic | 30.0% | |
| TTAGTATAGAGGAAAGTGAA+AGG | + | chr1.2:43159310-43159329 | None:intergenic | 30.0% | |
| TTGTTCATTCCTTTATCTGA+TGG | - | chr1.2:43159153-43159172 | MS.gene39217:intron | 30.0% | |
| TTTCATTTATGCATGGTTGA+TGG | - | chr1.2:43160588-43160607 | MS.gene39217:CDS | 30.0% | |
| ! | ACGGAAGTGTATAAAATCTA+TGG | - | chr1.2:43159927-43159946 | MS.gene39217:intron | 30.0% |
| ! | CAAAGTATCACACAAGAAAA+AGG | + | chr1.2:43158940-43158959 | None:intergenic | 30.0% |
| ! | CGGAAGTGTATAAAATCTAT+GGG | - | chr1.2:43159928-43159947 | MS.gene39217:intron | 30.0% |
| ! | GAAAGGAAGATTTTCTTTTG+AGG | + | chr1.2:43159293-43159312 | None:intergenic | 30.0% |
| !! | CAAGTTGATCTCTTAATCAT+GGG | - | chr1.2:43160472-43160491 | MS.gene39217:CDS | 30.0% |
| AAAGAGAAGGATGAAGATGA+AGG | - | chr1.2:43158380-43158399 | MS.gene39217:CDS | 35.0% | |
| AACAACATCTGAAAATGAGG+AGG | - | chr1.2:43158500-43158519 | MS.gene39217:intron | 35.0% | |
| AACGTTGAAGAGGTTATCAA+GGG | + | chr1.2:43158457-43158476 | None:intergenic | 35.0% | |
| AAGCTTGTATGCTCTTAAGT+GGG | - | chr1.2:43158431-43158450 | MS.gene39217:intron | 35.0% | |
| AATAGTCACTTACACTTCCA+AGG | + | chr1.2:43160648-43160667 | None:intergenic | 35.0% | |
| ACAACATCTGAAAATGAGGA+GGG | - | chr1.2:43158501-43158520 | MS.gene39217:intron | 35.0% | |
| ACGGGAATGAGAAAAATAGA+TGG | - | chr1.2:43158900-43158919 | MS.gene39217:intron | 35.0% | |
| AGGAAGTTAGCAAAGAAAGT+TGG | + | chr1.2:43158628-43158647 | None:intergenic | 35.0% | |
| ATATACTAACCAATACCAGC+TGG | + | chr1.2:43158591-43158610 | None:intergenic | 35.0% | |
| ATGGCCCAATACAAATGAAT+GGG | - | chr1.2:43159172-43159191 | MS.gene39217:intron | 35.0% | |
| ATTCAGATACTCTTTAGCCA+AGG | + | chr1.2:43159712-43159731 | None:intergenic | 35.0% | |
| CATAGTATATATGCACGACT+AGG | + | chr1.2:43159688-43159707 | None:intergenic | 35.0% | |
| CGGAAATGAGCAAAATCATA+TGG | + | chr1.2:43158822-43158841 | None:intergenic | 35.0% | |
| CGGGAATGAGAAAAATAGAT+GGG | - | chr1.2:43158901-43158920 | MS.gene39217:intron | 35.0% | |
| GAAATGAGTTTCGCTTTACA+AGG | + | chr1.2:43159857-43159876 | None:intergenic | 35.0% | |
| GAGCAATTCTCCAAGAAAAA+TGG | + | chr1.2:43158794-43158813 | None:intergenic | 35.0% | |
| GTATGCATCAATGAAAATGC+AGG | - | chr1.2:43160381-43160400 | MS.gene39217:intron | 35.0% | |
| GTGCATATATACTATGACCT+TGG | - | chr1.2:43159692-43159711 | MS.gene39217:intron | 35.0% | |
| TAACGTTGAAGAGGTTATCA+AGG | + | chr1.2:43158458-43158477 | None:intergenic | 35.0% | |
| TATGCATACCCTATACCTAT+GGG | - | chr1.2:43158564-43158583 | MS.gene39217:CDS | 35.0% | |
| TGATAACCTCTTCAACGTTA+TGG | - | chr1.2:43158458-43158477 | MS.gene39217:intron | 35.0% | |
| TGGAACAACATCTGAAAATG+AGG | - | chr1.2:43158497-43158516 | MS.gene39217:intron | 35.0% | |
| TTATGCATACCCTATACCTA+TGG | - | chr1.2:43158563-43158582 | MS.gene39217:CDS | 35.0% | |
| TTCAAAGAATCTGCAACTTC+AGG | + | chr1.2:43158992-43159011 | None:intergenic | 35.0% | |
| ! | GCAGAAAGTGTGATTCTTAA+TGG | - | chr1.2:43160409-43160428 | MS.gene39217:intron | 35.0% |
| ! | TGCAAGAGAAATGATTTGTC+AGG | - | chr1.2:43160435-43160454 | MS.gene39217:intron | 35.0% |
| !! | GCAAGTTGATCTCTTAATCA+TGG | - | chr1.2:43160471-43160490 | MS.gene39217:CDS | 35.0% |
| !! | GGAAGATTTTCTTTTGAGGA+AGG | + | chr1.2:43159289-43159308 | None:intergenic | 35.0% |
| !! | TTTTGAGGAAGGAAAGTGAA+AGG | + | chr1.2:43159278-43159297 | None:intergenic | 35.0% |
| !!! | TTTACCTTTTGAGTTTGCCA+AGG | + | chr1.2:43160507-43160526 | None:intergenic | 35.0% |
| AAGGATGAAGATGAAGGTGA+TGG | - | chr1.2:43158386-43158405 | MS.gene39217:CDS | 40.0% | |
| ACAGACATTATTCTCTCGTC+AGG | - | chr1.2:43159431-43159450 | MS.gene39217:intron | 40.0% | |
| AGCGAAACTCATTTCCTTGA+CGG | - | chr1.2:43159862-43159881 | MS.gene39217:intron | 40.0% | |
| AGGGAACCAATCTCATGATT+TGG | - | chr1.2:43159585-43159604 | MS.gene39217:intron | 40.0% | |
| ATGGCTACTGATACTATGGA+TGG | - | chr1.2:43158477-43158496 | MS.gene39217:intron | 40.0% | |
| CAACATCTGAAAATGAGGAG+GGG | - | chr1.2:43158502-43158521 | MS.gene39217:intron | 40.0% | |
| CGTTATGGCTACTGATACTA+TGG | - | chr1.2:43158473-43158492 | MS.gene39217:intron | 40.0% | |
| GAAGCTTGTATGCTCTTAAG+TGG | - | chr1.2:43158430-43158449 | MS.gene39217:intron | 40.0% | |
| GATGGCCCAATACAAATGAA+TGG | - | chr1.2:43159171-43159190 | MS.gene39217:intron | 40.0% | |
| GTATAGGGTATGCATAAGTG+TGG | + | chr1.2:43158560-43158579 | None:intergenic | 40.0% | |
| TGTATTGGGCCATCAGATAA+AGG | + | chr1.2:43159165-43159184 | None:intergenic | 40.0% | |
| TGTGTAAGTTAAGTCACGCT+CGG | - | chr1.2:43158869-43158888 | MS.gene39217:intron | 40.0% | |
| ! | AGCTGCAGATTTTTCTTGCT+GGG | + | chr1.2:43159020-43159039 | None:intergenic | 40.0% |
| ! | TAGCTGCAGATTTTTCTTGC+TGG | + | chr1.2:43159021-43159040 | None:intergenic | 40.0% |
| ! | TTTTTACGGAACTTCCGTCA+AGG | + | chr1.2:43159879-43159898 | None:intergenic | 40.0% |
| AATCTGCAGCTATTGCCTCA+CGG | - | chr1.2:43159029-43159048 | MS.gene39217:intron | 45.0% | |
| ATCTGAAAATGAGGAGGGGA+TGG | - | chr1.2:43158506-43158525 | MS.gene39217:intron | 45.0% | |
| CAGTAGCCATAACGTTGAAG+AGG | + | chr1.2:43158467-43158486 | None:intergenic | 45.0% | |
| CTCTTAATCATGGGTAGTCG+TGG | - | chr1.2:43160481-43160500 | MS.gene39217:CDS | 45.0% | |
| GAGGTGCAGAAGAAAAGAGA+AGG | - | chr1.2:43158367-43158386 | MS.gene39217:CDS | 45.0% | |
| GGTGGCTTCACAATGAGAAT+AGG | + | chr1.2:43160691-43160710 | None:intergenic | 45.0% | |
| GTGGCAATAGATGAGAGTGA+TGG | - | chr1.2:43158408-43158427 | MS.gene39217:intron | 45.0% | |
| ! | GATGAAGATGAAGGTGATGG+TGG | - | chr1.2:43158389-43158408 | MS.gene39217:CDS | 45.0% |
| ! | TTTTTATGGTGCTCCTCTGG+TGG | + | chr1.2:43160709-43160728 | None:intergenic | 45.0% |
| !! | TCTGCAACTTCAGGTGTTGA+TGG | + | chr1.2:43158983-43159002 | None:intergenic | 45.0% |
| !! | TGCTTTTTATGGTGCTCCTC+TGG | + | chr1.2:43160712-43160731 | None:intergenic | 45.0% |
| !! | TGGAAGTGTTGACCAAGTGA+GGG | - | chr1.2:43158344-43158363 | MS.gene39217:CDS | 45.0% |
| !! | CATAAATATTAAATAAATTT+AGG | + | chr1.2:43160208-43160227 | None:intergenic | 5.0% |
| !! | TTTAATATAAAATATACAAT+TGG | + | chr1.2:43160057-43160076 | None:intergenic | 5.0% |
| !!! | TAGTTTTTTTTTTTTTTTTA+CGG | + | chr1.2:43159893-43159912 | None:intergenic | 5.0% |
| ACGGGCTTTGCAAATGTGCA+AGG | - | chr1.2:43159048-43159067 | MS.gene39217:intron | 50.0% | |
| ATCTGCAGCTATTGCCTCAC+GGG | - | chr1.2:43159030-43159049 | MS.gene39217:intron | 50.0% | |
| CAGCTGGTCCCATAGGTATA+GGG | + | chr1.2:43158575-43158594 | None:intergenic | 50.0% | |
| CTTACACAGATGTATCGGGC+AGG | + | chr1.2:43158857-43158876 | None:intergenic | 50.0% | |
| GCAAATGTGCAAGGACAAGC+AGG | - | chr1.2:43159057-43159076 | MS.gene39217:intron | 50.0% | |
| TCTCATTGTGAAGCCACCAG+AGG | - | chr1.2:43160693-43160712 | MS.gene39217:CDS | 50.0% | |
| ! | GTGGCCTTGGCAAACTCAAA+AGG | - | chr1.2:43160500-43160519 | MS.gene39217:CDS | 50.0% |
| ! | TTTGGTGGCAGAGCATTCCT+TGG | - | chr1.2:43160628-43160647 | MS.gene39217:CDS | 50.0% |
| !! | GGAAGTGTTGACCAAGTGAG+GGG | - | chr1.2:43158345-43158364 | MS.gene39217:CDS | 50.0% |
| !! | GTCACGCTCGGCTATTTTGA+CGG | - | chr1.2:43158881-43158900 | MS.gene39217:intron | 50.0% |
| !! | GTGGAAGTGTTGACCAAGTG+AGG | - | chr1.2:43158343-43158362 | MS.gene39217:CDS | 50.0% |
| !!! | TCACGCTCGGCTATTTTGAC+GGG | - | chr1.2:43158882-43158901 | MS.gene39217:intron | 50.0% |
| ATCATGGGTAGTCGTGGCCT+TGG | - | chr1.2:43160487-43160506 | MS.gene39217:CDS | 55.0% | |
| CCAATACCAGCTGGTCCCAT+AGG | + | chr1.2:43158582-43158601 | None:intergenic | 55.0% | |
| CCAGCTGGTCCCATAGGTAT+AGG | + | chr1.2:43158576-43158595 | None:intergenic | 55.0% | |
| CCTATACCTATGGGACCAGC+TGG | - | chr1.2:43158573-43158592 | MS.gene39217:CDS | 55.0% | |
| CCTATGGGACCAGCTGGTAT+TGG | - | chr1.2:43158579-43158598 | MS.gene39217:CDS | 55.0% | |
| CGGGCAGGTGTATTTCTCAG+CGG | + | chr1.2:43158842-43158861 | None:intergenic | 55.0% | |
| GCACATTTGCAAAGCCCGTG+AGG | + | chr1.2:43159047-43159066 | None:intergenic | 55.0% | |
| TGTGCAAGGACAAGCAGGTG+CGG | - | chr1.2:43159062-43159081 | MS.gene39217:intron | 55.0% | |
| !! | AGTGTTGACCAAGTGAGGGG+AGG | - | chr1.2:43158348-43158367 | MS.gene39217:CDS | 55.0% |
| CTTCTGCACCTCCCCTCACT+TGG | + | chr1.2:43158359-43158378 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.2 | gene | 43158330 | 43160735 | 43158330 | ID=MS.gene39217 |
| chr1.2 | mRNA | 43158330 | 43160735 | 43158330 | ID=MS.gene39217.t1;Parent=MS.gene39217 |
| chr1.2 | exon | 43160465 | 43160735 | 43160465 | ID=MS.gene39217.t1.exon1;Parent=MS.gene39217.t1 |
| chr1.2 | CDS | 43160465 | 43160735 | 43160465 | ID=cds.MS.gene39217.t1;Parent=MS.gene39217.t1 |
| chr1.2 | exon | 43159987 | 43160093 | 43159987 | ID=MS.gene39217.t1.exon2;Parent=MS.gene39217.t1 |
| chr1.2 | CDS | 43159987 | 43160093 | 43159987 | ID=cds.MS.gene39217.t1;Parent=MS.gene39217.t1 |
| chr1.2 | exon | 43158544 | 43158662 | 43158544 | ID=MS.gene39217.t1.exon3;Parent=MS.gene39217.t1 |
| chr1.2 | CDS | 43158544 | 43158662 | 43158544 | ID=cds.MS.gene39217.t1;Parent=MS.gene39217.t1 |
| chr1.2 | exon | 43158330 | 43158426 | 43158330 | ID=MS.gene39217.t1.exon4;Parent=MS.gene39217.t1 |
| chr1.2 | CDS | 43158330 | 43158426 | 43158330 | ID=cds.MS.gene39217.t1;Parent=MS.gene39217.t1 |
| Gene Sequence |
| Protein sequence |
