AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene39545

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39545.t1 MTR_4g088055 100.000 175 0 0 1 175 22 196 1.20e-130 364
MS.gene39545.t1 MTR_4g073250 82.386 176 30 1 1 175 22 197 6.35e-107 304
MS.gene39545.t1 MTR_2g090875 85.143 175 26 0 1 175 22 196 3.11e-105 300
MS.gene39545.t1 MTR_8g075240 85.350 157 23 0 1 157 22 178 8.70e-101 288
MS.gene39545.t1 MTR_5g022600 84.076 157 25 0 1 157 22 178 2.16e-98 282
MS.gene39545.t1 MTR_6g087980 73.596 178 43 1 1 174 22 199 9.51e-98 281
MS.gene39545.t1 MTR_3g078260 72.727 176 47 1 1 175 24 199 2.93e-95 275
MS.gene39545.t1 MTR_3g078260 83.838 99 16 0 1 99 24 122 3.06e-59 181
MS.gene39545.t1 MTR_1g115325 32.450 151 89 5 1 149 31 170 1.86e-20 84.7
MS.gene39545.t1 MTR_7g103070 31.707 164 97 5 1 160 32 184 2.01e-20 84.3
MS.gene39545.t1 MTR_1g068740 32.450 151 89 5 1 149 31 170 2.44e-20 84.3
MS.gene39545.t1 MTR_1g068730 32.450 151 89 5 1 149 31 170 5.00e-20 83.6
MS.gene39545.t1 MTR_7g100020 30.814 172 103 6 1 167 31 191 9.92e-20 82.8
MS.gene39545.t1 MTR_8g093740 30.061 163 99 5 1 160 29 179 2.59e-19 81.6
MS.gene39545.t1 MTR_2g096550 29.885 174 107 6 1 170 31 193 7.20e-19 80.5
MS.gene39545.t1 MTR_3g096350 29.448 163 100 5 1 160 28 178 1.20e-18 79.7
MS.gene39545.t1 MTR_1g062760 31.902 163 95 6 1 159 30 180 2.50e-18 79.0
MS.gene39545.t1 MTR_8g103550 31.707 164 95 6 1 162 25 173 2.79e-18 78.6
MS.gene39545.t1 MTR_1g094220 33.548 155 84 7 11 162 58 196 3.43e-18 78.2
MS.gene39545.t1 MTR_3g064390 33.108 148 81 5 22 166 48 180 4.90e-18 77.8
MS.gene39545.t1 MTR_8g006970 32.370 173 98 8 1 166 38 198 7.00e-18 77.8
MS.gene39545.t1 MTR_4g063160 32.026 153 89 6 1 149 31 172 1.02e-17 77.4
MS.gene39545.t1 MTR_5g076590 31.757 148 83 5 22 166 48 180 3.02e-17 75.9
MS.gene39545.t1 MTR_1g029450 28.834 163 101 5 1 160 33 183 3.42e-17 75.9
MS.gene39545.t1 MTR_8g006970 33.333 159 89 7 1 154 24 170 4.73e-17 75.1
MS.gene39545.t1 MTR_7g103070 32.609 138 79 4 26 160 2 128 6.76e-17 73.9
MS.gene39545.t1 MTR_7g081700 30.058 173 102 7 1 166 24 184 8.92e-17 74.7
MS.gene39545.t1 MTR_8g093740 28.395 162 92 4 1 160 7 146 9.71e-17 73.9
MS.gene39545.t1 MTR_2g027660 29.139 151 93 5 1 149 22 160 2.79e-16 73.6
MS.gene39545.t1 MTR_4g098950 33.333 162 91 6 1 160 25 171 3.22e-16 73.2
MS.gene39545.t1 MTR_1g094220 32.215 149 85 6 11 156 58 193 3.38e-16 73.2
MS.gene39545.t1 MTR_5g013900 33.333 162 91 6 1 160 25 171 4.12e-16 73.2
MS.gene39545.t1 MTR_1g094220 33.333 123 69 4 29 150 77 187 4.19e-16 73.2
MS.gene39545.t1 MTR_6g021790 29.139 151 93 5 1 149 22 160 5.00e-16 72.8
MS.gene39545.t1 MTR_2g083860 36.538 104 63 3 1 102 29 131 6.69e-16 72.8
MS.gene39545.t1 MTR_2g102060 29.139 151 93 5 1 149 26 164 7.81e-16 72.0
MS.gene39545.t1 MTR_1g094220 32.692 156 86 7 11 160 58 200 8.45e-16 72.8
MS.gene39545.t1 MTR_1g068730 32.743 113 73 3 1 111 31 142 8.89e-16 71.2
MS.gene39545.t1 MTR_3g064390 39.535 86 50 2 22 106 48 132 1.42e-15 70.5
MS.gene39545.t1 MTR_2g005510 32.558 129 77 4 1 120 31 158 1.50e-15 71.6
MS.gene39545.t1 MTR_4g099470 30.822 146 87 5 8 151 7 140 1.64e-15 70.9
MS.gene39545.t1 MTR_8g090215 31.788 151 89 5 1 149 25 163 3.20e-15 70.5
MS.gene39545.t1 MTR_2g005500 29.801 151 92 5 1 149 25 163 3.39e-15 70.5
MS.gene39545.t1 MTR_3g069510 31.788 151 89 5 1 149 28 166 3.98e-15 70.5
MS.gene39545.t1 MTR_1g068740 33.333 108 69 3 1 106 31 137 4.14e-15 70.1
MS.gene39545.t1 MTR_3g087160 31.126 151 90 4 1 149 25 163 4.39e-15 70.1
MS.gene39545.t1 MTR_4g079350 33.582 134 79 4 1 125 29 161 5.45e-15 70.1
MS.gene39545.t1 MTR_2g075950 36.538 104 63 3 1 102 29 131 7.75e-15 69.7
MS.gene39545.t1 MTR_4g064897 30.464 151 91 6 1 149 28 166 8.33e-15 69.7
MS.gene39545.t1 MTR_2g014990 36.538 104 63 3 1 102 29 131 9.23e-15 69.7
MS.gene39545.t1 MTR_4g088090 36.538 104 63 3 1 102 29 131 1.10e-14 69.3
MS.gene39545.t1 MTR_1g052475 34.951 103 64 3 1 101 31 132 1.23e-14 69.3
MS.gene39545.t1 MTR_8g089985 34.579 107 67 3 1 105 33 138 1.36e-14 69.3
MS.gene39545.t1 MTR_8g027220 35.238 105 65 3 1 103 42 145 2.86e-14 68.6
MS.gene39545.t1 MTR_7g117910 33.036 112 72 3 1 110 36 146 3.59e-14 67.8
MS.gene39545.t1 MTR_0262s0050 33.981 103 65 3 1 101 31 132 4.71e-14 67.8
MS.gene39545.t1 MTR_8g031870 27.152 151 96 5 1 149 22 160 5.11e-14 67.0
MS.gene39545.t1 MTR_3g086980 28.477 151 94 5 1 149 32 170 8.20e-14 67.0
MS.gene39545.t1 MTR_2g101890 29.268 164 101 5 1 158 26 180 1.21e-13 66.2
MS.gene39545.t1 MTR_4g069850 27.647 170 108 4 1 164 24 184 2.08e-13 65.9
MS.gene39545.t1 MTR_1g090717 28.824 170 104 7 1 165 31 188 3.22e-13 65.5
MS.gene39545.t1 MTR_8g092020 27.778 162 102 4 1 156 28 180 3.35e-13 65.1
MS.gene39545.t1 MTR_1g097420 27.811 169 107 5 1 163 24 183 6.27e-13 64.3
MS.gene39545.t1 MTR_4g012940 28.659 164 102 5 1 158 24 178 7.47e-13 64.3
MS.gene39545.t1 MTR_1g097420 27.811 169 107 5 1 163 51 210 9.59e-13 64.3
MS.gene39545.t1 MTR_3g096350 32.039 103 66 3 1 100 28 129 9.92e-13 62.8
MS.gene39545.t1 MTR_3g096350 32.039 103 66 3 1 100 28 129 1.29e-12 62.8
MS.gene39545.t1 MTR_1g078200 31.250 128 75 4 28 154 58 173 1.41e-12 63.9
MS.gene39545.t1 MTR_8g036220 30.464 151 91 5 1 149 32 170 1.46e-12 63.9
MS.gene39545.t1 MTR_8g031660 27.152 151 96 5 1 149 22 160 2.93e-12 62.8
MS.gene39545.t1 MTR_7g051940 28.205 156 98 5 1 154 29 172 3.06e-12 62.8
MS.gene39545.t1 MTR_7g094810 30.769 130 83 1 33 162 55 177 5.75e-12 63.2
MS.gene39545.t1 MTR_7g094810 30.769 130 83 1 33 162 55 177 5.88e-12 63.5
MS.gene39545.t1 MTR_7g094810 30.769 130 83 1 33 162 55 177 6.54e-12 63.2
MS.gene39545.t1 MTR_8g107070 33.010 103 66 3 1 101 30 131 7.34e-12 62.4
MS.gene39545.t1 MTR_8g031830 26.000 150 97 5 1 148 22 159 7.46e-12 61.2
MS.gene39545.t1 MTR_7g094810 30.769 130 83 1 33 162 55 177 7.90e-12 63.2
MS.gene39545.t1 MTR_7g094810 30.769 130 83 1 33 162 55 177 7.99e-12 63.2
MS.gene39545.t1 MTR_8g031680 24.503 151 100 5 1 149 22 160 3.07e-11 60.1
MS.gene39545.t1 MTR_2g090865 35.577 104 64 3 1 102 27 129 6.05e-11 59.3
MS.gene39545.t1 MTR_7g405790 26.923 156 100 5 1 154 31 174 6.81e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene39545.t1 AT5G45970 80.000 180 31 1 1 175 22 201 1.01e-103 296
MS.gene39545.t1 AT1G20090 84.571 175 27 0 1 175 21 195 1.07e-103 296
MS.gene39545.t1 AT4G35020 84.375 160 25 0 1 160 22 181 1.71e-103 295
MS.gene39545.t1 AT4G35020 84.375 160 25 0 1 160 22 181 1.71e-103 295
MS.gene39545.t1 AT4G35020 84.375 160 25 0 1 160 22 181 1.71e-103 295
MS.gene39545.t1 AT1G75840 84.000 175 28 0 1 175 22 196 1.05e-102 293
MS.gene39545.t1 AT3G51300 87.261 157 20 0 1 157 22 178 9.12e-102 291
MS.gene39545.t1 AT2G17800 87.261 157 20 0 1 157 22 178 1.23e-101 291
MS.gene39545.t1 AT2G17800 87.261 157 20 0 1 157 22 178 1.23e-101 291
MS.gene39545.t1 AT4G35950 85.987 157 22 0 1 157 22 178 1.82e-100 288
MS.gene39545.t1 AT5G62880 77.358 159 36 0 1 159 24 182 1.47e-93 271
MS.gene39545.t1 AT4G28950 74.118 170 42 1 1 170 22 189 3.09e-93 270
MS.gene39545.t1 AT3G48040 76.730 159 37 0 1 159 24 182 1.53e-92 268
MS.gene39545.t1 AT2G44690 72.727 176 47 1 1 175 34 209 1.16e-91 266
MS.gene39545.t1 AT3G51290 86.897 145 19 0 13 157 635 779 1.38e-87 273
MS.gene39545.t1 AT5G62880 76.316 152 32 1 1 152 24 171 2.82e-86 251
MS.gene39545.t1 AT3G48040 77.622 143 32 0 1 143 24 166 2.09e-83 244
MS.gene39545.t1 AT4G35020 88.889 99 11 0 1 99 22 120 1.16e-63 192
MS.gene39545.t1 AT4G35020 88.889 99 11 0 1 99 22 120 1.16e-63 192
MS.gene39545.t1 AT5G45130 35.135 148 78 5 22 166 48 180 1.49e-21 87.0
MS.gene39545.t1 AT5G45130 35.135 148 78 5 22 166 56 188 2.27e-21 87.0
MS.gene39545.t1 AT4G19640 35.135 148 78 5 22 166 48 180 4.58e-21 85.9
MS.gene39545.t1 AT3G54840 31.515 165 95 6 1 162 15 164 2.62e-20 83.2
MS.gene39545.t1 AT3G46060 32.450 151 89 5 1 149 31 170 3.40e-20 84.0
MS.gene39545.t1 AT3G46060 32.450 151 89 5 1 149 31 170 3.40e-20 84.0
MS.gene39545.t1 AT3G46060 32.450 151 89 5 1 149 31 170 3.40e-20 84.0
MS.gene39545.t1 AT3G54840 31.515 165 95 6 1 162 49 198 9.04e-20 82.4
MS.gene39545.t1 AT5G59840 31.126 151 91 5 1 149 31 170 6.54e-19 80.5
MS.gene39545.t1 AT3G54840 31.373 153 90 5 1 150 49 189 2.76e-18 78.6
MS.gene39545.t1 AT1G43890 29.448 163 100 5 1 160 29 179 5.73e-18 78.2
MS.gene39545.t1 AT1G43890 29.448 163 100 5 1 160 29 179 5.73e-18 78.2
MS.gene39545.t1 AT1G43890 29.448 163 100 5 1 160 29 179 5.73e-18 78.2
MS.gene39545.t1 AT3G53610 30.464 151 92 5 1 149 31 170 9.26e-18 77.4
MS.gene39545.t1 AT3G53610 30.464 151 92 5 1 149 31 170 9.26e-18 77.4
MS.gene39545.t1 AT3G53610 30.464 151 92 5 1 149 31 170 9.26e-18 77.4
MS.gene39545.t1 AT4G35860 30.380 158 95 6 1 155 22 167 1.98e-17 76.6
MS.gene39545.t1 AT4G19640 41.860 86 48 2 22 106 48 132 2.32e-17 75.1
MS.gene39545.t1 AT2G44610 33.951 162 90 6 1 160 25 171 3.70e-17 75.9
MS.gene39545.t1 AT4G17530 31.214 173 100 7 1 166 24 184 3.72e-17 75.9
MS.gene39545.t1 AT1G02130 31.214 173 100 8 1 166 24 184 3.75e-17 75.9
MS.gene39545.t1 AT5G03530 32.927 164 94 8 1 160 29 180 4.25e-17 75.9
MS.gene39545.t1 AT5G03530 32.927 164 94 8 1 160 29 180 4.25e-17 75.9
MS.gene39545.t1 AT1G09630 34.328 134 78 4 1 125 28 160 5.22e-17 75.5
MS.gene39545.t1 AT1G16920 38.462 104 61 3 1 102 29 131 6.01e-17 75.5
MS.gene39545.t1 AT4G19640 41.860 86 48 2 22 106 48 132 6.47e-17 74.7
MS.gene39545.t1 AT5G47200 31.214 173 100 7 1 166 24 184 8.96e-17 74.7
MS.gene39545.t1 AT5G03520 33.562 146 82 5 26 167 47 181 1.98e-16 73.9
MS.gene39545.t1 AT4G39890 32.895 152 87 5 1 149 25 164 2.11e-16 73.9
MS.gene39545.t1 AT5G03520 35.200 125 69 4 26 149 57 170 2.16e-16 73.9
MS.gene39545.t1 AT3G09900 34.400 125 70 4 26 149 57 170 2.19e-16 73.9
MS.gene39545.t1 AT4G17170 29.139 151 93 5 1 149 22 160 2.32e-16 73.9
MS.gene39545.t1 AT2G22290 34.437 151 85 5 1 149 25 163 3.58e-16 73.2
MS.gene39545.t1 AT4G17160 27.815 151 95 5 1 149 22 160 5.19e-16 72.8
MS.gene39545.t1 AT4G35860 31.818 132 76 5 26 155 2 121 5.23e-16 72.0
MS.gene39545.t1 AT1G06400 37.500 104 62 3 1 102 29 131 5.40e-16 72.8
MS.gene39545.t1 AT1G18200 31.613 155 92 5 1 153 29 171 6.10e-16 73.2
MS.gene39545.t1 AT5G45750 32.450 151 88 5 1 149 29 167 1.54e-15 71.6
MS.gene39545.t1 AT3G18820 29.412 170 105 5 1 164 24 184 2.60e-15 70.9
MS.gene39545.t1 AT4G18430 39.423 104 60 3 1 102 29 131 3.40e-15 70.9
MS.gene39545.t1 AT5G10260 32.450 151 88 5 1 149 25 163 3.60e-15 70.5
MS.gene39545.t1 AT3G12160 35.922 103 63 3 1 101 31 132 4.25e-15 70.5
MS.gene39545.t1 AT3G15060 37.500 104 62 3 1 102 29 131 4.84e-15 70.5
MS.gene39545.t1 AT1G28550 37.500 104 62 3 1 102 29 131 7.99e-15 69.7
MS.gene39545.t1 AT1G73640 31.788 151 89 5 1 149 29 167 8.33e-15 70.1
MS.gene39545.t1 AT3G11730 28.477 151 94 5 1 149 24 162 1.29e-14 68.9
MS.gene39545.t1 AT5G64990 33.113 151 87 5 1 149 23 161 1.75e-14 68.6
MS.gene39545.t1 AT4G18800 31.126 151 90 5 1 149 29 167 2.09e-14 68.6
MS.gene39545.t1 AT5G59150 29.032 155 96 5 1 153 28 170 2.63e-14 68.6
MS.gene39545.t1 AT5G60860 36.538 104 63 3 1 102 29 131 3.10e-14 68.2
MS.gene39545.t1 AT2G33870 37.864 103 61 3 1 101 29 130 3.35e-14 68.2
MS.gene39545.t1 AT1G07410 29.801 151 92 5 1 149 28 166 3.84e-14 67.8
MS.gene39545.t1 AT1G22740 28.994 169 105 5 1 163 24 183 5.10e-14 67.4
MS.gene39545.t1 AT3G09910 26.136 176 104 6 13 173 40 204 7.64e-14 67.0
MS.gene39545.t1 AT3G09910 26.136 176 104 6 13 173 40 204 7.64e-14 67.0
MS.gene39545.t1 AT3G09910 26.136 176 104 6 13 173 40 204 7.64e-14 67.0
MS.gene39545.t1 AT5G65270 28.125 192 117 6 1 172 33 223 7.86e-14 67.4
MS.gene39545.t1 AT3G46830 29.139 151 93 5 1 149 28 166 1.11e-13 66.6
MS.gene39545.t1 AT3G46830 29.139 151 93 5 1 149 28 166 1.11e-13 66.6
MS.gene39545.t1 AT5G47520 30.469 128 76 4 28 154 58 173 2.15e-13 65.9
MS.gene39545.t1 AT5G47960 32.039 103 67 3 1 101 31 132 2.94e-13 65.9
MS.gene39545.t1 AT1G52280 27.907 172 108 6 1 166 24 185 3.09e-13 65.5
MS.gene39545.t1 AT4G39990 30.841 107 71 3 1 105 33 138 4.10e-13 65.5
MS.gene39545.t1 AT2G43130 27.564 156 99 5 1 154 28 171 4.44e-13 65.1
MS.gene39545.t1 AT3G09910 27.607 163 101 6 13 169 40 191 4.99e-13 64.7
MS.gene39545.t1 AT3G09910 27.607 163 101 6 13 169 40 191 4.99e-13 64.7
MS.gene39545.t1 AT5G59150 30.233 129 77 4 26 153 3 119 5.09e-13 63.9
MS.gene39545.t1 AT3G16100 29.268 164 101 5 1 158 24 178 1.29e-12 63.5
MS.gene39545.t1 AT2G31680 27.564 156 99 5 1 154 28 171 1.40e-12 63.9
MS.gene39545.t1 AT2G21880 27.219 169 108 5 1 163 25 184 2.31e-12 63.2
MS.gene39545.t1 AT2G21880 27.381 168 107 5 2 163 1 159 3.54e-12 62.0
MS.gene39545.t1 AT2G21880 27.381 168 107 5 2 163 1 159 3.54e-12 62.0
MS.gene39545.t1 AT1G05810 27.097 155 99 5 1 153 74 216 3.91e-12 63.2
MS.gene39545.t1 AT1G05810 27.097 155 99 5 1 153 28 170 4.04e-12 62.4
MS.gene39545.t1 AT5G64990 31.646 158 87 6 1 149 23 168 6.31e-12 62.0
MS.gene39545.t1 AT1G01200 32.039 103 67 3 1 101 44 145 1.44e-11 61.2
MS.gene39545.t1 AT3G07410 27.564 156 99 5 1 154 28 171 1.69e-11 60.8
MS.gene39545.t1 AT1G49300 28.387 155 96 5 1 149 24 169 1.97e-11 60.5
MS.gene39545.t1 AT1G49300 28.387 155 96 5 1 149 24 169 1.97e-11 60.5

Find 30 sgRNAs with CRISPR-Local

Find 57 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTACAGTTAATCTTGGTTTA+TGG 0.192232 4.2:-23243840 MS.gene39545:CDS
GTCTTGCGTGGTTTCTTCTT+TGG 0.222979 4.2:+23242840 None:intergenic
GTGTTGGTGGGAACAAAATT+AGG 0.288814 4.2:-23243440 MS.gene39545:intron
CGTGGTTTCTTCTTTGGCTT+TGG 0.304527 4.2:+23242846 None:intergenic
TTATGAGAACATTTCCAAAA+AGG 0.315063 4.2:-23243593 MS.gene39545:intron
TACAGTTAATCTTGGTTTAT+GGG 0.333419 4.2:-23243839 MS.gene39545:CDS
AAGAAGATTACAATAGATTA+AGG 0.345982 4.2:-23243678 MS.gene39545:CDS
TTTGTTCCCACCAACACAAT+AGG 0.367762 4.2:+23243446 None:intergenic
ACCAACACAATAGGCACATT+TGG 0.389878 4.2:+23243455 None:intergenic
GATGGTAGTACAGTTAATCT+TGG 0.405802 4.2:-23243847 MS.gene39545:CDS
GGTTTCTTCTTTGGCTTTGG+TGG 0.414729 4.2:+23242849 None:intergenic
GAAGAATTAAAGAAAATGAT+TGG 0.437849 4.2:-23243108 MS.gene39545:CDS
GTTGTTATTTGTGTCGCTCC+AGG 0.479248 4.2:+23243248 None:intergenic
CTTGGTTTATGGGATACTGC+AGG 0.516373 4.2:-23243829 MS.gene39545:intron
CTGAAATTGTCAAACACAGT+TGG 0.524107 4.2:+23243886 None:intergenic
TTAGAAACATACTGTGGGAA+AGG 0.550222 4.2:+23243993 None:intergenic
AAATGTGCCTATTGTGTTGG+TGG 0.550285 4.2:-23243453 MS.gene39545:CDS
AGAAGAAACCACGCAAGACA+AGG 0.561090 4.2:-23242836 MS.gene39545:CDS
TCCAAATGTGCCTATTGTGT+TGG 0.565001 4.2:-23243456 MS.gene39545:CDS
TCAGCTCCTCTGTAACTCAA+TGG 0.570878 4.2:+23243655 None:intergenic
GACACAAATAACAACTGCTA+AGG 0.578938 4.2:-23243240 MS.gene39545:intron
GTACATGTCCTTGTCTTGCG+TGG 0.584257 4.2:+23242828 None:intergenic
ACTACCATCCACCACTACAT+TGG 0.600120 4.2:+23243861 None:intergenic
GTGCAGCTCTAAAACACAGC+AGG 0.601225 4.2:-23243067 MS.gene39545:intron
TTAAGGCCATTGAGTTACAG+AGG 0.604328 4.2:-23243661 MS.gene39545:CDS
AATGTGCCTATTGTGTTGGT+GGG 0.621966 4.2:-23243452 MS.gene39545:CDS
CAATTTCAGTGCCAATGTAG+TGG 0.639616 4.2:-23243872 MS.gene39545:CDS
AGTGCCAATGTAGTGGTGGA+TGG 0.639752 4.2:-23243865 MS.gene39545:CDS
TTTCAGTGCCAATGTAGTGG+TGG 0.671684 4.2:-23243869 MS.gene39545:CDS
CTGCAATAAAGATTGCATTG+AGG 0.683742 4.2:-23242872 MS.gene39545:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTTGATGTTATTTAT+TGG - chr4.2:23243111-23243130 MS.gene39545:CDS 10.0%
!! TCTTATATATCTAACTTATA+AGG + chr4.2:23243289-23243308 None:intergenic 15.0%
!! TTAAATTTAATCAATGATTG+TGG - chr4.2:23243695-23243714 MS.gene39545:intron 15.0%
!! AAGAAGATTACAATAGATTA+AGG - chr4.2:23243158-23243177 MS.gene39545:intron 20.0%
!! GAAGAATTAAAGAAAATGAT+TGG - chr4.2:23243728-23243747 MS.gene39545:intron 20.0%
!! TTCAAAAAATACTTCACAAT+TGG + chr4.2:23243888-23243907 None:intergenic 20.0%
!! TTGTACATGCAAAATAATAT+TGG + chr4.2:23243669-23243688 None:intergenic 20.0%
!!! TATTATTTTGCATGTACAAA+TGG - chr4.2:23243670-23243689 MS.gene39545:CDS 20.0%
! AAAAGTAAAACATAGAGCTT+TGG + chr4.2:23243045-23243064 None:intergenic 25.0%
! AACTATTTAGAAACATACTG+TGG + chr4.2:23242852-23242871 None:intergenic 25.0%
! ACTATTTAGAAACATACTGT+GGG + chr4.2:23242851-23242870 None:intergenic 25.0%
! ACTTATAAGGTAATGTATAG+AGG + chr4.2:23243276-23243295 None:intergenic 25.0%
! TACAGTTAATCTTGGTTTAT+GGG - chr4.2:23242997-23243016 MS.gene39545:intron 25.0%
! TCATTACTGTCAACTTATAA+TGG + chr4.2:23243462-23243481 None:intergenic 25.0%
! TTATGAGAACATTTCCAAAA+AGG - chr4.2:23243243-23243262 MS.gene39545:CDS 25.0%
!! ATAGAGGAAAAAAACCTTTT+TGG + chr4.2:23243260-23243279 None:intergenic 25.0%
!!! AAATTACAGCACTTCTTTTT+TGG - chr4.2:23243797-23243816 MS.gene39545:intron 25.0%
!!! ATCAATGTAAAGTTTTGATG+AGG - chr4.2:23243073-23243092 MS.gene39545:CDS 25.0%
AATCAATGATTGTGGTAAAC+AGG - chr4.2:23243703-23243722 MS.gene39545:intron 30.0%
ATCAATGATTGTGGTAAACA+GGG - chr4.2:23243704-23243723 MS.gene39545:intron 30.0%
ATTTATTGGTGTGAATTGTG+TGG - chr4.2:23243125-23243144 MS.gene39545:intron 30.0%
GTACAGTTAATCTTGGTTTA+TGG - chr4.2:23242996-23243015 MS.gene39545:intron 30.0%
TTACTGTCAACTTATAATGG+TGG + chr4.2:23243459-23243478 None:intergenic 30.0%
! TGGTTGAAATGTTACTTAGA+TGG + chr4.2:23243431-23243450 None:intergenic 30.0%
!!! CAATTTTTTATCGATCATCC+TGG - chr4.2:23243570-23243589 MS.gene39545:intron 30.0%
!!! CATTTTTAGTTGACTAACAG+TGG - chr4.2:23243334-23243353 MS.gene39545:intron 30.0%
!!! GTTTTGTTTACAGAATGTGA+AGG - chr4.2:23243929-23243948 MS.gene39545:intron 30.0%
!!! TCTTGTGCTTTTTCTATGAT+AGG - chr4.2:23242919-23242938 MS.gene39545:intron 30.0%
CTGAAATTGTCAAACACAGT+TGG + chr4.2:23242953-23242972 None:intergenic 35.0%
CTGCAATAAAGATTGCATTG+AGG - chr4.2:23243964-23243983 MS.gene39545:intron 35.0%
GACACAAATAACAACTGCTA+AGG - chr4.2:23243596-23243615 MS.gene39545:CDS 35.0%
GATGGTAGTACAGTTAATCT+TGG - chr4.2:23242989-23243008 MS.gene39545:intron 35.0%
TTAGAAACATACTGTGGGAA+AGG + chr4.2:23242846-23242865 None:intergenic 35.0%
AAATGTGCCTATTGTGTTGG+TGG - chr4.2:23243383-23243402 MS.gene39545:intron 40.0%
ACCAACACAATAGGCACATT+TGG + chr4.2:23243384-23243403 None:intergenic 40.0%
CAATTTCAGTGCCAATGTAG+TGG - chr4.2:23242964-23242983 MS.gene39545:intron 40.0%
TCCAAATGTGCCTATTGTGT+TGG - chr4.2:23243380-23243399 MS.gene39545:intron 40.0%
TCGCAAATCTGTGCATACAT+AGG + chr4.2:23243541-23243560 None:intergenic 40.0%
TTAAGGCCATTGAGTTACAG+AGG - chr4.2:23243175-23243194 MS.gene39545:intron 40.0%
TTTGTTCCCACCAACACAAT+AGG + chr4.2:23243393-23243412 None:intergenic 40.0%
! AATGTGCCTATTGTGTTGGT+GGG - chr4.2:23243384-23243403 MS.gene39545:intron 40.0%
! GTGTGAATTGTGTGGATTAC+AGG - chr4.2:23243133-23243152 MS.gene39545:intron 40.0%
! GTGTTGGTGGGAACAAAATT+AGG - chr4.2:23243396-23243415 MS.gene39545:intron 40.0%
!! AACTTATAATGGTGGACTGG+TGG + chr4.2:23243451-23243470 None:intergenic 40.0%
!! GTCAACTTATAATGGTGGAC+TGG + chr4.2:23243454-23243473 None:intergenic 40.0%
ACTACCATCCACCACTACAT+TGG + chr4.2:23242978-23242997 None:intergenic 45.0%
AGAAGAAACCACGCAAGACA+AGG - chr4.2:23244000-23244019 MS.gene39545:intron 45.0%
CTTGGTTTATGGGATACTGC+AGG - chr4.2:23243007-23243026 MS.gene39545:intron 45.0%
GTCTTGCGTGGTTTCTTCTT+TGG + chr4.2:23243999-23244018 None:intergenic 45.0%
TCAGCTCCTCTGTAACTCAA+TGG + chr4.2:23243184-23243203 None:intergenic 45.0%
TTTCAGTGCCAATGTAGTGG+TGG - chr4.2:23242967-23242986 MS.gene39545:intron 45.0%
! CGTGGTTTCTTCTTTGGCTT+TGG + chr4.2:23243993-23244012 None:intergenic 45.0%
!! GGTTTCTTCTTTGGCTTTGG+TGG + chr4.2:23243990-23244009 None:intergenic 45.0%
!! GTTGTTATTTGTGTCGCTCC+AGG + chr4.2:23243591-23243610 None:intergenic 45.0%
GTACATGTCCTTGTCTTGCG+TGG + chr4.2:23244011-23244030 None:intergenic 50.0%
! AGTGCCAATGTAGTGGTGGA+TGG - chr4.2:23242971-23242990 MS.gene39545:intron 50.0%
!! GTGCAGCTCTAAAACACAGC+AGG - chr4.2:23243769-23243788 MS.gene39545:intron 50.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 23242818 23244040 23242818 ID=MS.gene39545
chr4.2 mRNA 23242818 23244040 23242818 ID=MS.gene39545.t1;Parent=MS.gene39545
chr4.2 exon 23244005 23244040 23244005 ID=MS.gene39545.t1.exon1;Parent=MS.gene39545.t1
chr4.2 CDS 23244005 23244040 23244005 ID=cds.MS.gene39545.t1;Parent=MS.gene39545.t1
chr4.2 exon 23243830 23243917 23243830 ID=MS.gene39545.t1.exon2;Parent=MS.gene39545.t1
chr4.2 CDS 23243830 23243917 23243830 ID=cds.MS.gene39545.t1;Parent=MS.gene39545.t1
chr4.2 exon 23243594 23243703 23243594 ID=MS.gene39545.t1.exon3;Parent=MS.gene39545.t1
chr4.2 CDS 23243594 23243703 23243594 ID=cds.MS.gene39545.t1;Parent=MS.gene39545.t1
chr4.2 exon 23243441 23243504 23243441 ID=MS.gene39545.t1.exon4;Parent=MS.gene39545.t1
chr4.2 CDS 23243441 23243504 23243441 ID=cds.MS.gene39545.t1;Parent=MS.gene39545.t1
chr4.2 exon 23243241 23243305 23243241 ID=MS.gene39545.t1.exon5;Parent=MS.gene39545.t1
chr4.2 CDS 23243241 23243305 23243241 ID=cds.MS.gene39545.t1;Parent=MS.gene39545.t1
chr4.2 exon 23243068 23243133 23243068 ID=MS.gene39545.t1.exon6;Parent=MS.gene39545.t1
chr4.2 CDS 23243068 23243133 23243068 ID=cds.MS.gene39545.t1;Parent=MS.gene39545.t1
chr4.2 exon 23242818 23242916 23242818 ID=MS.gene39545.t1.exon7;Parent=MS.gene39545.t1
chr4.2 CDS 23242818 23242916 23242818 ID=cds.MS.gene39545.t1;Parent=MS.gene39545.t1
Gene Sequence

>MS.gene39545

ATGCTTATATCATATACAAGCAATACCTTTCCCACAGTATGTTTCTAAATAGTTCAATTTACATGTAAAAAAATATAGTGATGAATCTAATATATTCTTTTTCTTGTGCTTTTTCTATGATAGGATTATGTTCCAACTGTGTTTGACAATTTCAGTGCCAATGTAGTGGTGGATGGTAGTACAGTTAATCTTGGTTTATGGGATACTGCAGGTTAGTCTTAACTCCAAAGCTCTATGTTTTACTTTTTAATATAAATCAATGTAAAGTTTTGATGAGGTGAAATTTTGTGTGAATTTTTTTGATGTTATTTATTGGTGTGAATTGTGTGGATTACAGGACAAGAAGATTACAATAGATTAAGGCCATTGAGTTACAGAGGAGCTGATGTGTTTTTGTTGTGTTTTTCTCTCATTAGTAAAGCTAGTTATGAGAACATTTCCAAAAAGGTTTTTTTCCTCTATACATTACCTTATAAGTTAGATATATAAGATCTCTATTTTTTGTTACTGTAATAACATTTTTAGTTGACTAACAGTGGATATCTGAGCTGAGACATTATGCTCCAAATGTGCCTATTGTGTTGGTGGGAACAAAATTAGGTAAGCTATTCCATCTAAGTAACATTTCAACCACCAGTCCACCATTATAAGTTGACAGTAATGAAAATTTCATCTGATTATAGCTTACAGAACATTCAAAATGTCTGATTATGTTTAAATCCTATGTATGCACAGATTTGCGAGATGACAAGCAATTTTTTATCGATCATCCTGGAGCGACACAAATAACAACTGCTAAGGCATGTCGTCGATAAATAAATTATTCATAAAAATTTCTATATTTGAAACCAATATTATTTTGCATGTACAAATGGATTTAAATTTAATCAATGATTGTGGTAAACAGGGTGAAGAATTAAAGAAAATGATTGGAGCAGTTAGTTACATTGAGTGCAGCTCTAAAACACAGCAGGTAAAAAAATTACAGCACTTCTTTTTTGGATTTAACTTTTTTAGTGTGTCATATTTTTGATGCAAAAGATGCTACTTGATTCAATTATTATATTCCAATTGTGAAGTATTTTTTGAAGTATTTGTTCTAATTATTTTCGTTTTGTTTACAGAATGTGAAGGTAGTTTTTGATGCTGCAATAAAGATTGCATTGAGGCCACCAAAGCCAAAGAAGAAACCACGCAAGACAAGGACATGTACTTTCCTCTAA
Protein sequence

>MS.gene39545.t1

MLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLCFSLISKASYENISKKWISELRHYAPNVPIVLVGTKLDLRDDKQFFIDHPGATQITTAKGEELKKMIGAVSYIECSSKTQQNVKVVFDAAIKIALRPPKPKKKPRKTRTCTFL