AlfalfaGEDB | MS.gene61326

M. sativa cultivar XinJiangDaYe / MS.gene61326

KEGG: K04392
GO: GO:0000166 GO:0001882 GO:0001883 GO:0003674 GO:0003824 GO:0003924 GO:0005488 GO:0005525 GO:0007165 GO:0007264 GO:0008150 GO:0009987 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017076 GO:0017111 GO:0019001 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0035556 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0050789 GO:0050794 GO:0065007 GO:0097159 GO:0097367 GO:1901265 GO:1901363
PFAM: PF00071.25

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61326.t1	XP_003620632.1	99.5	209	1	0	1	209	1	209	2.20E-115	424.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61326.t1	O82480	91.4	210	15	2	1	209	1	208	9.5e-107	387.5

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61326.t1	A7UQU4	99.5	209	1	0	1	209	1	209	1.6e-115	424.9

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051914	MS.gene61326	0.81403	1.90E-51	-1.69E-46
MS.gene052308	MS.gene61326	0.854792	9.72E-62	-1.69E-46
MS.gene053173	MS.gene61326	0.828692	7.80E-55	-1.69E-46
MS.gene054551	MS.gene61326	0.831736	1.41E-55	-1.69E-46
MS.gene054593	MS.gene61326	0.806725	7.16E-50	-1.69E-46
MS.gene055308	MS.gene61326	0.813667	2.28E-51	-1.69E-46
MS.gene055578	MS.gene61326	0.840362	9.10E-58	-1.69E-46
MS.gene056041	MS.gene61326	0.830524	2.80E-55	-1.69E-46
MS.gene05640	MS.gene61326	0.803186	3.93E-49	-1.69E-46
MS.gene05652	MS.gene61326	0.810248	1.27E-50	-1.69E-46

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PPI:

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Gene1	Gene2	Type
MS.gene012136	MS.gene61326	PPI
MS.gene017610	MS.gene61326	PPI
MS.gene074376	MS.gene61326	PPI
MS.gene26862	MS.gene61326	PPI
MS.gene28870	MS.gene61326	PPI
MS.gene39545	MS.gene61326	PPI
MS.gene44220	MS.gene61326	PPI
MS.gene47563	MS.gene61326	PPI
MS.gene59498	MS.gene61326	PPI
MS.gene61326	MS.gene59498	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61326.t1	MTR_6g087980	99.522	209	1	0	1	209	1	209	5.22e-157	432
MS.gene61326.t1	MTR_3g078260	76.471	204	45	2	2	205	4	204	3.93e-117	332
MS.gene61326.t1	MTR_4g073250	75.000	200	47	1	1	200	1	197	2.65e-113	322
MS.gene61326.t1	MTR_2g090875	81.461	178	33	0	1	178	1	178	1.20e-109	312
MS.gene61326.t1	MTR_8g075240	79.775	178	36	0	1	178	1	178	2.21e-106	304
MS.gene61326.t1	MTR_4g088055	78.652	178	38	0	1	178	1	178	6.81e-106	303
MS.gene61326.t1	MTR_5g022600	79.213	178	37	0	1	178	1	178	9.25e-105	300
MS.gene61326.t1	MTR_3g078260	87.395	119	15	0	2	120	4	122	2.67e-76	226
MS.gene61326.t1	MTR_3g096350	32.584	178	105	5	7	181	13	178	4.85e-27	102
MS.gene61326.t1	MTR_7g103070	32.967	182	107	5	8	185	18	188	6.05e-26	100

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene61326.t1	AT4G28950	91.429	210	15	2	1	209	1	208	2.30e-142	395
MS.gene61326.t1	AT3G48040	77.451	204	45	1	2	205	4	206	2.41e-114	325
MS.gene61326.t1	AT5G62880	82.682	179	31	0	2	180	4	182	1.01e-111	318
MS.gene61326.t1	AT4G35020	79.558	181	37	0	1	181	1	181	1.36e-109	312
MS.gene61326.t1	AT4G35020	79.558	181	37	0	1	181	1	181	1.36e-109	312
MS.gene61326.t1	AT4G35020	79.558	181	37	0	1	181	1	181	1.36e-109	312
MS.gene61326.t1	AT3G51300	80.337	178	35	0	1	178	1	178	1.11e-107	307
MS.gene61326.t1	AT1G75840	80.337	178	35	0	1	178	1	178	1.62e-106	304
MS.gene61326.t1	AT5G45970	78.212	179	39	0	1	179	1	179	2.00e-106	304
MS.gene61326.t1	AT1G20090	80.114	176	35	0	3	178	2	177	8.03e-106	303

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Find 47 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATGTGTCACTGTTGGTGA+TGG	0.594720	6.3:-81201831	MS.gene61326:CDS
AAGAAAAGGCAAAGAAGGTC+CGG	0.538145	6.3:-81199013	MS.gene61326:CDS
AAGAAATGCCAAGGAAGAAA+AGG	0.469586	6.3:-81199027	MS.gene61326:CDS
AAGAACAATTGGTACATTAG+GGG	0.696220	6.3:+81199620	None:intergenic
AAGAACTGAGGAAACAAATT+GGG	0.420070	6.3:-81199255	MS.gene61326:CDS
AATGTACCAATTGTTCTTGT+TGG	0.346567	6.3:-81199615	MS.gene61326:CDS
ACAAGAACAATTGGTACATT+AGG	0.278025	6.3:+81199618	None:intergenic
ACTGTTGGTGATGGTGCTGT+TGG	0.537659	6.3:-81201822	MS.gene61326:CDS
AGAACTGAGGAAACAAATTG+GGG	0.674028	6.3:-81199254	MS.gene61326:CDS
AGGAGGACTATAGCAGGTTG+AGG	0.592230	6.3:-81200930	MS.gene61326:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAAAAACGAACCGTATATC+AGG	-	chr6.3:81201567-81201586	MS.gene61326:intron	30.0%
AACATGAAGAAATCCAAACA+AGG	+	chr6.3:81199447-81199466	None:intergenic	30.0%
AAGAACAATTGGTACATTAG+GGG	+	chr6.3:81200538-81200557	None:intergenic	30.0%
AAGAACTGAGGAAACAAATT+GGG	-	chr6.3:81200900-81200919	MS.gene61326:CDS	30.0%
AATAAGCTGTTTATCCAAAC+AGG	-	chr6.3:81198747-81198766	MS.gene61326:intron	30.0%
AATGTACCAATTGTTCTTGT+TGG	-	chr6.3:81200540-81200559	MS.gene61326:intron	30.0%
ACAAGAACAATTGGTACATT+AGG	+	chr6.3:81200540-81200559	None:intergenic	30.0%
ACATGAAGAAATCCAAACAA+GGG	+	chr6.3:81199446-81199465	None:intergenic	30.0%
ACTATATACTATGAGCTAGT+TGG	-	chr6.3:81198511-81198530	MS.gene61326:intron	30.0%
ATAAGCTGTTTATCCAAACA+GGG	-	chr6.3:81198748-81198767	MS.gene61326:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.3	gene	81198303	81201874	81198303	ID=MS.gene61326
chr6.3	mRNA	81198303	81201874	81198303	ID=MS.gene61326.t1;Parent=MS.gene61326
chr6.3	exon	81201776	81201874	81201776	ID=MS.gene61326.t1.exon1;Parent=MS.gene61326.t1
chr6.3	CDS	81201776	81201874	81201776	ID=cds.MS.gene61326.t1;Parent=MS.gene61326.t1
chr6.3	exon	81201082	81201169	81201082	ID=MS.gene61326.t1.exon2;Parent=MS.gene61326.t1
chr6.3	CDS	81201082	81201169	81201082	ID=cds.MS.gene61326.t1;Parent=MS.gene61326.t1
chr6.3	exon	81200846	81200955	81200846	ID=MS.gene61326.t1.exon3;Parent=MS.gene61326.t1
chr6.3	CDS	81200846	81200955	81200846	ID=cds.MS.gene61326.t1;Parent=MS.gene61326.t1
chr6.3	exon	81199604	81199667	81199604	ID=MS.gene61326.t1.exon4;Parent=MS.gene61326.t1
chr6.3	CDS	81199604	81199667	81199604	ID=cds.MS.gene61326.t1;Parent=MS.gene61326.t1
chr6.3	exon	81199433	81199497	81199433	ID=MS.gene61326.t1.exon5;Parent=MS.gene61326.t1
chr6.3	CDS	81199433	81199497	81199433	ID=cds.MS.gene61326.t1;Parent=MS.gene61326.t1
chr6.3	exon	81199216	81199281	81199216	ID=MS.gene61326.t1.exon6;Parent=MS.gene61326.t1
chr6.3	CDS	81199216	81199281	81199216	ID=cds.MS.gene61326.t1;Parent=MS.gene61326.t1
chr6.3	exon	81199001	81199107	81199001	ID=MS.gene61326.t1.exon7;Parent=MS.gene61326.t1
chr6.3	CDS	81199001	81199107	81199001	ID=cds.MS.gene61326.t1;Parent=MS.gene61326.t1
chr6.3	exon	81198303	81198333	81198303	ID=MS.gene61326.t1.exon8;Parent=MS.gene61326.t1
chr6.3	CDS	81198303	81198333	81198303	ID=cds.MS.gene61326.t1;Parent=MS.gene61326.t1

Gene Sequence

>MS.gene61326

ATGAGTGCATCAAAGTTCATTAAATGTGTCACTGTTGGTGATGGTGCTGTTGGAAAAACTTGCATGCTCATTTGTTACACCAGTAACAAATTTCCCACTGTAATATTTCTTCTTGTTATCATCCATATATTATATAAATTTCCTAAAAAAAGTTTCCCCATTTTTTAATTTTTGATCTTTTATTATTTAGTTGTTTTTCTGTCTTCAAACTATATACTATGAGCTAGTTGGATTGACTTAATTTTCGTTTATCTACTGATATTATAAGTTTTGTGAGACTGTTTGGAAGGACATTTTTTATAAACTTTTTCGGCTTATTTTCATAAGTTCTTCAAGATAGGTTATGACATATACAAAAACAATTTAATTTTATTTAATTTTATATTTTGCTATAAAAATAGCTTATGTAGCTTATACATAAGTGCTTATTATGATAAGCTGCAAAATAAGCTGTTTATCCAAACAGGGTCTATATGAACAAGATAAATATTTGAACATTTTAATGCTGATCACTTATACTAATATAGGGTCATTTTTTATTCCAATGTTATCATGTGCTTAATTATATCTTTTACAGCTTATGATTTTTGATTTGTGTAAGGATTCTAATTCTGGTAATCTTATGATTTTTTTTTTTGATAATTTTTTTCTAAAAATGTTACTGTTTTTTTTTTAAATTTTTAATTTTTAATTTTTGGGTTGCAGGATTATATACCAACAGTATTTGATAATTTTAGTGCAAATGTAGCTGTGGATGGAAGCATTGTGAATTTGGGTCTATGGGACACTGCAGGTACTTAAAACTTTGTTTTGTTTTTTTTCTTTCTTTTATTTTGGTTAATTACATTTTACATTTGATTTTTTTTAATAAATTTTGTTTTCTTAACAAATAATGGGATTTTTTTTTCAATGTTTGCAGGCCAGGAGGACTATAGCAGGTTGAGGCCACTGAGCTATAGAGGAGCAGATATATTTGTCTTAGCATTTTCATTGATTAGTAGAGCTAGCTATGAAAATGTTCTTAAGAAGGTTCATGCCTAACTATTTCTTTGCTTCCTCTTATAATACTTTTTCTTTTTATTTAATTTATTTTCTCTTGTTTCTATTTTTGGATTCATGTTTTCTAAAAGTTAGATTTTGCCCTTGTTTGGATTTCTTCATGTTTTCTGCACTTGTGAGACTGTTTGAGGGAGTTTATGAAAACAACTTACGACATGTGCATAAGCTGTTTTTAGCTTATTCATAAGCTTGTTAGGAAAGCTTATGAAAACAGCTTATAACTTACATGAAAACAGTTTAACTATGTTTTATCTTTTGTCAAAGAAATAACTTATACATAAACACTTACATGATAATGGTTTATGTAAGAAACGCTTAATTGAGCTGTTTATCCAACCATGAGCCTGTGTTTGCATGTTGATGATAAATGGGAGGAAAGGAAAATAGTAGATAGAAACTATAGAAGAAAGTTCACAATGCAAAACATTATCTTGTGCTAGATGAAATATGTTGCTTAAAATATTAGTTAATGTTTAGTACTATTTTGTTACAATTGTTAAAAAGTGAAACTTAAAATTTGAAATGCTGAAAGTGTCTCTTGCAACCTATTTGAAACCATAATAAATAAATAATTATCAAATAAATTGATAGGGACATTATGCAGACAATATTTCAAAACATAGAAATCAAGTTGAAAATGAATCTTTGGTTGGTTTTTTCCACCATAGCTTGTTGACTTCTATCTTATGCCTAGTGATAGCTACTTGATGATAGGGAAAGAAAATTATTAGCTAATGTAATCTTCAACATAAATGGGGTGTCATATTTTATTAATTTCAAACTTTACCTTTATAAATAGGTGCACTAAATTTGACAACACATTTTTGGTAAAGATATCACTAAAATTTACTATTGATAATTGATAGAATGATGCATTTTCTTTAAGCATAAGTTTGCAATTGTTTCCTATTTCTGTAATTTTTATAATAATTTTGGGTCTGCTTATGACTTACACTGTCGAACAATTGCACATTTTCATTGTATTCATAATTACCGATAATAGATCATTCTCACCATAACATAGAGATCTACCTCGGCATTGCGAGGCTTTCTGGTGTATCAGAACACATAGCATTCATGCACATGCATTTAATGTTCTTAGCTCTAGATCGGTTATTCATTTCGACTTTTTTTGTTTTCTCTTTCAGTGGATGCCAGAATTGCGTAGATTCGCCCCTAATGTACCAATTGTTCTTGTTGGTACAAAGTTGGGTAAGTAATAGCTCAAACAAAATTTTGTACTTTTATTGTTCTGGTCCTTTAACCTATTAAGAGAAGAAGAAACTAATGACATAAAGTATTGAATTTTTTCTTTTAGATCTTCGTGAAGACCGTGGATACTTCGCTGATCACACGGGATATAATGTTATAACATCTGCTGAGGTTTGAATTCTTCATATTTGTTTCTCTATTGTTTTATACTGTTATAACACTTGATTGATGTTACACCGTTCAATAACTTATTTGATGTGTTAGCGAGGTTCGTTAAGATTAACATCTGAAGTACATTTATTAAACAAGTTAATCTTTGCAGGGAGAAGAACTGAGGAAACAAATTGGGGCTGCAGCGTACATCGAGTGCAGCTCGAAGACTCAACAGGTAATTGGTTTAAATTTGATAATAAAATTCAAATTTATGATGTATGTTGGTTTCTCTTTGCAGAATCTTATGACATAGAATCTAATTTAACATGTTTTCATGATTTAGAACGTGAAAGCAGTTTTTGATACTGCAATTAAGGTTGTTCTTCAACCTCCAAGGAGGAAAGAAATGCCAAGGAAGAAAAGGCAAAGAAGGTCCGGTTGCTCCTTTGTGTAAGTGCCGTCTCTTGCTCCGATAATTTGAAATTGAATCATACTTTAAATCATCGGTTTGATGGATGGTATTCTCATATAATCATATTTACTTATATAGTTCTAATTCAAGACTAATTTGAAGATTGAATAGTATATACAGTTCATAGAGATTTTTTAATAGTAAGGAAATTAGATTGTTAGGCAAGTTGATATTGCTAGGACTGTTGATGGTTCAATTCAGGAAGGAAAGCTGAACCATTACAACAGTTTGACAAAACTGACCAAACTCGTGTTAATGGTTTGTCTCGAACAAAACTGATAAACGCTCGATGCTCCGATTCTGTGTTTTCGAATCAAACCATAACTAATTTAACCTATTTGCTATTATTAACTTATATTAGGACTGTTAAAAAAACGAACCGTATATCAGGACTGTTAAAAAACCAAACCACTAAACCAATTTGAACCGCACCGTAAAGAACTGATCCATGCCTGATAGTTCACGAACAAGTTGCGTTCGCGAGCTACTTGTCACGTGATTTCAACTATTTTGGCTCATTTACTTGAATAAAACTATGCAAATGCAAGTATCTATAGTTAGTCCTGAGAGTCTGAGATGTTATCATACACTTGTTACATATGACTGTATGTTAACATTAACATCTATCTTTTTTTCTTACTACAGGGGTATTGTGTGTGGAGGTTGTGCTGCTTAA

Protein sequence

>MS.gene61326.t1

MSASKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGSIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISRASYENVLKKWMPELRRFAPNVPIVLVGTKLDLREDRGYFADHTGYNVITSAEGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRRKEMPRKKRQRRSGCSFVGIVCGGCAA