Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40492.t1 | XP_003610780.1 | 87.7 | 212 | 26 | 0 | 1 | 212 | 1 | 212 | 3.30E-58 | 235 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40492.t1 | G7K519 | 87.7 | 212 | 26 | 0 | 1 | 212 | 1 | 212 | 2.4e-58 | 235.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene40492 | 0.802023 | 6.83E-49 | -1.69E-46 |
| MS.gene049611 | MS.gene40492 | 0.814405 | 1.57E-51 | -1.69E-46 |
| MS.gene050082 | MS.gene40492 | 0.818179 | 2.24E-52 | -1.69E-46 |
| MS.gene050381 | MS.gene40492 | 0.820747 | 5.83E-53 | -1.69E-46 |
| MS.gene050809 | MS.gene40492 | 0.825087 | 5.68E-54 | -1.69E-46 |
| MS.gene05240 | MS.gene40492 | 0.806148 | 9.47E-50 | -1.69E-46 |
| MS.gene052702 | MS.gene40492 | 0.802854 | 4.60E-49 | -1.69E-46 |
| MS.gene053420 | MS.gene40492 | 0.811153 | 8.07E-51 | -1.69E-46 |
| MS.gene053920 | MS.gene40492 | 0.806646 | 7.44E-50 | -1.69E-46 |
| MS.gene055959 | MS.gene40492 | 0.818439 | 1.96E-52 | -1.69E-46 |
| MS.gene056920 | MS.gene40492 | 0.809033 | 2.31E-50 | -1.69E-46 |
| MS.gene057544 | MS.gene40492 | 0.811758 | 5.96E-51 | -1.69E-46 |
| MS.gene057717 | MS.gene40492 | 0.8059 | 1.07E-49 | -1.69E-46 |
| MS.gene058067 | MS.gene40492 | 0.948297 | 1.25E-106 | -1.69E-46 |
| MS.gene058068 | MS.gene40492 | 0.878699 | 2.27E-69 | -1.69E-46 |
| MS.gene058099 | MS.gene40492 | 0.806017 | 1.01E-49 | -1.69E-46 |
| MS.gene058268 | MS.gene40492 | 0.80348 | 3.42E-49 | -1.69E-46 |
| MS.gene058269 | MS.gene40492 | 0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene059070 | MS.gene40492 | 0.800237 | 1.58E-48 | -1.69E-46 |
| MS.gene059955 | MS.gene40492 | 0.806904 | 6.56E-50 | -1.69E-46 |
| MS.gene060405 | MS.gene40492 | 0.808721 | 2.70E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40492.t1 | MTR_5g006940 | 96.226 | 212 | 8 | 0 | 1 | 212 | 1 | 212 | 2.01e-141 | 393 |
| MS.gene40492.t1 | MTR_1g103420 | 52.727 | 220 | 93 | 5 | 1 | 212 | 1 | 217 | 4.17e-63 | 195 |
| MS.gene40492.t1 | MTR_1g071720 | 46.405 | 153 | 73 | 7 | 1 | 146 | 1 | 151 | 8.76e-33 | 117 |
| MS.gene40492.t1 | MTR_1g071720 | 44.375 | 160 | 78 | 7 | 1 | 156 | 1 | 153 | 2.34e-32 | 116 |
| MS.gene40492.t1 | MTR_7g095250 | 43.590 | 117 | 51 | 4 | 36 | 147 | 1 | 107 | 1.17e-19 | 82.8 |
| MS.gene40492.t1 | MTR_5g006950 | 35.433 | 127 | 71 | 6 | 1 | 125 | 1 | 118 | 8.13e-12 | 61.6 |
| MS.gene40492.t1 | MTR_1g103450 | 32.456 | 114 | 71 | 3 | 6 | 118 | 2 | 110 | 4.00e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene40492.t1 | AT1G05450 | 51.366 | 183 | 79 | 4 | 26 | 208 | 27 | 199 | 7.18e-44 | 146 |
| MS.gene40492.t1 | AT3G22620 | 43.750 | 208 | 103 | 6 | 10 | 212 | 5 | 203 | 8.69e-39 | 133 |
| MS.gene40492.t1 | AT2G48140 | 41.667 | 204 | 103 | 7 | 12 | 210 | 7 | 199 | 1.50e-34 | 122 |
| MS.gene40492.t1 | AT2G48140 | 53.913 | 115 | 47 | 3 | 12 | 123 | 7 | 118 | 1.96e-33 | 117 |
| MS.gene40492.t1 | AT3G22600 | 35.766 | 137 | 71 | 6 | 1 | 129 | 1 | 128 | 5.91e-13 | 64.7 |
| MS.gene40492.t1 | AT2G48130 | 34.694 | 147 | 83 | 7 | 4 | 145 | 3 | 141 | 3.49e-12 | 63.2 |
| MS.gene40492.t1 | AT2G48130 | 34.694 | 147 | 83 | 7 | 4 | 145 | 3 | 141 | 3.49e-12 | 63.2 |
| MS.gene40492.t1 | AT2G48130 | 34.694 | 147 | 83 | 7 | 4 | 145 | 3 | 141 | 3.49e-12 | 63.2 |
| MS.gene40492.t1 | AT2G48130 | 34.694 | 147 | 83 | 7 | 4 | 145 | 3 | 141 | 3.49e-12 | 63.2 |
| MS.gene40492.t1 | AT2G48130 | 34.694 | 147 | 83 | 7 | 4 | 145 | 3 | 141 | 3.49e-12 | 63.2 |
| MS.gene40492.t1 | AT2G48130 | 34.694 | 147 | 83 | 7 | 4 | 145 | 3 | 141 | 3.49e-12 | 63.2 |
Find 65 sgRNAs with CRISPR-Local
Find 90 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGACAGGACCGGCGTCTTTC+GGG | 0.228150 | 5.3:-1917656 | MS.gene40492:intron |
| TTGACAGGACCGGCGTCTTT+CGG | 0.267890 | 5.3:-1917657 | MS.gene40492:intron |
| CAGATCAGAGCGGCCACTTC+CGG | 0.318856 | 5.3:+1917223 | None:intergenic |
| TAGTCTCCTACTATCTGTTT+TGG | 0.329233 | 5.3:-1917171 | MS.gene40492:CDS |
| GGCGTTGCAGATGGAATATC+AGG | 0.363139 | 5.3:+1917245 | None:intergenic |
| GGGTTCGCTGATGGAGATAA+TGG | 0.387464 | 5.3:+1917266 | None:intergenic |
| ATAGCTAAGGTTCTATTGAT+TGG | 0.389392 | 5.3:+1917963 | None:intergenic |
| TTCTATATTAAAACACTACT+AGG | 0.400865 | 5.3:-1917138 | None:intergenic |
| GGCTCACCGCTTCCTGCTCC+AGG | 0.422121 | 5.3:-1917765 | MS.gene40492:intron |
| GATCTGACTCCATCATCTGC+TGG | 0.433930 | 5.3:-1917206 | MS.gene40492:CDS |
| GAAACTCAAGCAAGGGCTAA+TGG | 0.441100 | 5.3:+1918112 | None:intergenic |
| CCTCGTGCTTGTAACTTGCC+TGG | 0.444455 | 5.3:-1917933 | MS.gene40492:CDS |
| AGATCAGAGCGGCCACTTCC+GGG | 0.444900 | 5.3:+1917224 | None:intergenic |
| CCACTTCCGGGCGTTGCAGA+TGG | 0.451493 | 5.3:+1917236 | None:intergenic |
| CTATTGATTGGTAATGCAAA+AGG | 0.452479 | 5.3:+1917975 | None:intergenic |
| GTTAGCCGTGGCTTCGATCA+TGG | 0.462490 | 5.3:-1918192 | MS.gene40492:CDS |
| CTAAGAGATGGTGTCAATGC+AGG | 0.465399 | 5.3:+1917621 | None:intergenic |
| CTTACCATTGATATGTTACA+TGG | 0.470781 | 5.3:+1918140 | None:intergenic |
| CAATGACCAAAACAGATAGT+AGG | 0.505531 | 5.3:+1917165 | None:intergenic |
| GATAATGGATTGGTTGTCTC+AGG | 0.511804 | 5.3:+1917281 | None:intergenic |
| ATCCTTGCTTCCACTTGTGA+GGG | 0.516520 | 5.3:+1918028 | None:intergenic |
| CCATCTGCAACGCCCGGAAG+TGG | 0.516819 | 5.3:-1917236 | MS.gene40492:CDS |
| GATGATGATCCAGCAGATGA+TGG | 0.519019 | 5.3:+1917197 | None:intergenic |
| AATCCTTGCTTCCACTTGTG+AGG | 0.527769 | 5.3:+1918027 | None:intergenic |
| GGAATATCAGGGTTCGCTGA+TGG | 0.537454 | 5.3:+1917257 | None:intergenic |
| AGAGAAGGTGTCACTGGTGA+GGG | 0.537488 | 5.3:+1917314 | None:intergenic |
| CCACGGCTAACACCACAGTT+AGG | 0.542248 | 5.3:+1918204 | None:intergenic |
| CGCTGATGGAGATAATGGAT+TGG | 0.542515 | 5.3:+1917271 | None:intergenic |
| GATATTCCATCTGCAACGCC+CGG | 0.544541 | 5.3:-1917242 | MS.gene40492:CDS |
| CTCACAAATAGTAGTGGCAA+TGG | 0.545441 | 5.3:-1918089 | MS.gene40492:CDS |
| CGTCGCGGTTTACCTGGAGC+AGG | 0.545706 | 5.3:+1917753 | None:intergenic |
| TAAGAGATGGTGTCAATGCA+GGG | 0.547995 | 5.3:+1917622 | None:intergenic |
| GACCCTCACAAGTGGAAGCA+AGG | 0.549047 | 5.3:-1918030 | MS.gene40492:CDS |
| CATTGCCACTACTATTTGTG+AGG | 0.549899 | 5.3:+1918090 | None:intergenic |
| GTCGTGATTTGAGCGTAGGC+TGG | 0.551456 | 5.3:+1918164 | None:intergenic |
| TGTATGTGTCTTATTGCCAC+TGG | 0.565408 | 5.3:-1918005 | MS.gene40492:CDS |
| GGATTGGTTGTCTCAGGCTG+TGG | 0.565431 | 5.3:+1917287 | None:intergenic |
| GGTTTACCTGGAGCAGGAAG+CGG | 0.566105 | 5.3:+1917759 | None:intergenic |
| GACGCCATGTAACATATCAA+TGG | 0.568392 | 5.3:-1918144 | MS.gene40492:CDS |
| TTGCATTGAAGTGGAACACC+AGG | 0.570114 | 5.3:+1917915 | None:intergenic |
| ACACCATCTCTTAGTCCTCA+AGG | 0.573546 | 5.3:-1917612 | MS.gene40492:intron |
| GCAGCAATCAGCAGTGGGTG+AGG | 0.573593 | 5.3:+1918064 | None:intergenic |
| TGGCGTCGTGATTTGAGCGT+AGG | 0.576088 | 5.3:+1918160 | None:intergenic |
| GCAATCAAGACCCTCACAAG+TGG | 0.578959 | 5.3:-1918038 | MS.gene40492:CDS |
| CAGAGAAGGTGTCACTGGTG+AGG | 0.580166 | 5.3:+1917313 | None:intergenic |
| AGTTTCCTCACAAATAGTAG+TGG | 0.606601 | 5.3:-1918095 | MS.gene40492:CDS |
| TGCAGCCATGATCGAAGCCA+CGG | 0.611380 | 5.3:+1918187 | None:intergenic |
| GTCAATGCAGGGGAAAGAGA+TGG | 0.612748 | 5.3:+1917633 | None:intergenic |
| CCTAACTGTGGTGTTAGCCG+TGG | 0.613375 | 5.3:-1918204 | MS.gene40492:CDS |
| GGTGACAGAGAAGGTGTCAC+TGG | 0.619445 | 5.3:+1917308 | None:intergenic |
| AGAGATGGCCCGAAAGACGC+CGG | 0.622383 | 5.3:+1917648 | None:intergenic |
| TTGTGAGGAAACTCAAGCAA+GGG | 0.634401 | 5.3:+1918105 | None:intergenic |
| ACGAGGAAGAGAGATAGCTA+AGG | 0.635982 | 5.3:+1917950 | None:intergenic |
| GTACCTTGAGGACTAAGAGA+TGG | 0.638083 | 5.3:+1917609 | None:intergenic |
| GCATTGCAGCAATCAGCAGT+GGG | 0.640694 | 5.3:+1918059 | None:intergenic |
| TTTGTGAGGAAACTCAAGCA+AGG | 0.643831 | 5.3:+1918104 | None:intergenic |
| GTCTCTCTACCGCCTAACTG+TGG | 0.648382 | 5.3:-1918216 | MS.gene40492:CDS |
| TCAGGCTGTGGTGACAGAGA+AGG | 0.649180 | 5.3:+1917299 | None:intergenic |
| TGCATTGCAGCAATCAGCAG+TGG | 0.654060 | 5.3:+1918058 | None:intergenic |
| AAGAGATGGTGTCAATGCAG+GGG | 0.669299 | 5.3:+1917623 | None:intergenic |
| GCGTTGCAGATGGAATATCA+GGG | 0.683696 | 5.3:+1917246 | None:intergenic |
| CCAGGCAAGTTACAAGCACG+AGG | 0.683819 | 5.3:+1917933 | None:intergenic |
| TGCAAAAGGAACATTGCCAG+TGG | 0.683851 | 5.3:+1917989 | None:intergenic |
| CGGCTAACACCACAGTTAGG+CGG | 0.689758 | 5.3:+1918207 | None:intergenic |
| ATGATGGAGTCAGATCAGAG+CGG | 0.809779 | 5.3:+1917213 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAAAAATAATAGTAATTTTT+AGG | + | chr5.3:1917657-1917676 | None:intergenic | 10.0% |
| !! | AAAATAAAGAATGAAGATTT+AGG | + | chr5.3:1917491-1917510 | None:intergenic | 15.0% |
| !!! | ATAAATATGGTTTTAAATTG+CGG | + | chr5.3:1917955-1917974 | None:intergenic | 15.0% |
| !! | TTAGTGATCAACTATAAATA+TGG | + | chr5.3:1917968-1917987 | None:intergenic | 20.0% |
| ! | AGAGTAATTGACAAATAGAA+TGG | + | chr5.3:1917553-1917572 | None:intergenic | 25.0% |
| !!! | GTGAAAAATTGTTTTTGATG+CGG | - | chr5.3:1917855-1917874 | MS.gene40492:intron | 25.0% |
| !!! | TCATTTTGACTTATATTGAC+AGG | - | chr5.3:1917697-1917716 | MS.gene40492:intron | 25.0% |
| ATAGCTAAGGTTCTATTGAT+TGG | + | chr5.3:1917409-1917428 | None:intergenic | 30.0% | |
| CTCAAGGTACATATTACTTA+CGG | - | chr5.3:1917773-1917792 | MS.gene40492:CDS | 30.0% | |
| CTTACCATTGATATGTTACA+TGG | + | chr5.3:1917232-1917251 | None:intergenic | 30.0% | |
| GAACCTGTTCAATGAAAAAA+AGG | + | chr5.3:1918025-1918044 | None:intergenic | 30.0% | |
| !! | CTATTGATTGGTAATGCAAA+AGG | + | chr5.3:1917397-1917416 | None:intergenic | 30.0% |
| !!! | TCACCTTTTTTTCATTGAAC+AGG | - | chr5.3:1918019-1918038 | MS.gene40492:CDS | 30.0% |
| AGTTTCCTCACAAATAGTAG+TGG | - | chr5.3:1917274-1917293 | MS.gene40492:CDS | 35.0% | |
| CAATGACCAAAACAGATAGT+AGG | + | chr5.3:1918207-1918226 | None:intergenic | 35.0% | |
| CGTAAGTAATATGTACCTTG+AGG | + | chr5.3:1917775-1917794 | None:intergenic | 35.0% | |
| CTTCTGTAACCTTTACATTG+TGG | - | chr5.3:1917910-1917929 | MS.gene40492:intron | 35.0% | |
| GTACATATTACTTACGGTCA+AGG | - | chr5.3:1917779-1917798 | MS.gene40492:intron | 35.0% | |
| TTGACTTATATTGACAGGAC+CGG | - | chr5.3:1917702-1917721 | MS.gene40492:intron | 35.0% | |
| ! | AAGGTTCTAACTTGTAGTTG+CGG | - | chr5.3:1917798-1917817 | MS.gene40492:intron | 35.0% |
| ! | TAGTCTCCTACTATCTGTTT+TGG | - | chr5.3:1918198-1918217 | MS.gene40492:CDS | 35.0% |
| !! | AGAGTACTTTTGCATTGAAG+TGG | + | chr5.3:1917466-1917485 | None:intergenic | 35.0% |
| !!! | CTACTATCTGTTTTGGTCAT+TGG | - | chr5.3:1918205-1918224 | MS.gene40492:CDS | 35.0% |
| CATTGCCACTACTATTTGTG+AGG | + | chr5.3:1917282-1917301 | None:intergenic | 40.0% | |
| CTCACAAATAGTAGTGGCAA+TGG | - | chr5.3:1917280-1917299 | MS.gene40492:CDS | 40.0% | |
| GACGCCATGTAACATATCAA+TGG | - | chr5.3:1917225-1917244 | MS.gene40492:CDS | 40.0% | |
| TTGTGAGGAAACTCAAGCAA+GGG | + | chr5.3:1917267-1917286 | None:intergenic | 40.0% | |
| TTTGTGAGGAAACTCAAGCA+AGG | + | chr5.3:1917268-1917287 | None:intergenic | 40.0% | |
| ! | TAAGAGATGGTGTCAATGCA+GGG | + | chr5.3:1917750-1917769 | None:intergenic | 40.0% |
| ! | TGTATGTGTCTTATTGCCAC+TGG | - | chr5.3:1917364-1917383 | MS.gene40492:intron | 40.0% |
| !! | GATAATGGATTGGTTGTCTC+AGG | + | chr5.3:1918091-1918110 | None:intergenic | 40.0% |
| !! | TTTGTTGTTCTCTGCAGCTT+CGG | - | chr5.3:1917582-1917601 | MS.gene40492:intron | 40.0% |
| AATCCTTGCTTCCACTTGTG+AGG | + | chr5.3:1917345-1917364 | None:intergenic | 45.0% | |
| ACACCATCTCTTAGTCCTCA+AGG | - | chr5.3:1917757-1917776 | MS.gene40492:intron | 45.0% | |
| ACGAGGAAGAGAGATAGCTA+AGG | + | chr5.3:1917422-1917441 | None:intergenic | 45.0% | |
| ATCCTTGCTTCCACTTGTGA+GGG | + | chr5.3:1917344-1917363 | None:intergenic | 45.0% | |
| GAAACTCAAGCAAGGGCTAA+TGG | + | chr5.3:1917260-1917279 | None:intergenic | 45.0% | |
| GATGATGATCCAGCAGATGA+TGG | + | chr5.3:1918175-1918194 | None:intergenic | 45.0% | |
| GCGTTGCAGATGGAATATCA+GGG | + | chr5.3:1918126-1918145 | None:intergenic | 45.0% | |
| GTACCTTGAGGACTAAGAGA+TGG | + | chr5.3:1917763-1917782 | None:intergenic | 45.0% | |
| TGCAAAAGGAACATTGCCAG+TGG | + | chr5.3:1917383-1917402 | None:intergenic | 45.0% | |
| TTGCATTGAAGTGGAACACC+AGG | + | chr5.3:1917457-1917476 | None:intergenic | 45.0% | |
| ! | AAGAGATGGTGTCAATGCAG+GGG | + | chr5.3:1917749-1917768 | None:intergenic | 45.0% |
| ! | ATGATGGAGTCAGATCAGAG+CGG | + | chr5.3:1918159-1918178 | None:intergenic | 45.0% |
| ! | CTAAGAGATGGTGTCAATGC+AGG | + | chr5.3:1917751-1917770 | None:intergenic | 45.0% |
| ! | TTGTTGTTCTCTGCAGCTTC+GGG | - | chr5.3:1917583-1917602 | MS.gene40492:intron | 45.0% |
| ! | TTTTGATGCGGCCACAATTG+TGG | - | chr5.3:1917867-1917886 | MS.gene40492:intron | 45.0% |
| !! | CATAATAGAGTGTTGCGTCG+CGG | + | chr5.3:1917634-1917653 | None:intergenic | 45.0% |
| !! | CGCTGATGGAGATAATGGAT+TGG | + | chr5.3:1918101-1918120 | None:intergenic | 45.0% |
| CTACTGCGGCCACAATGTAA+AGG | + | chr5.3:1917922-1917941 | None:intergenic | 50.0% | |
| CTAGAGCTCGACCACAATTG+TGG | + | chr5.3:1917881-1917900 | None:intergenic | 50.0% | |
| GATATTCCATCTGCAACGCC+CGG | - | chr5.3:1918127-1918146 | MS.gene40492:CDS | 50.0% | |
| GATCTGACTCCATCATCTGC+TGG | - | chr5.3:1918163-1918182 | MS.gene40492:CDS | 50.0% | |
| GCAATCAAGACCCTCACAAG+TGG | - | chr5.3:1917331-1917350 | MS.gene40492:CDS | 50.0% | |
| GCATTGCAGCAATCAGCAGT+GGG | + | chr5.3:1917313-1917332 | None:intergenic | 50.0% | |
| GGAATATCAGGGTTCGCTGA+TGG | + | chr5.3:1918115-1918134 | None:intergenic | 50.0% | |
| GGCGTTGCAGATGGAATATC+AGG | + | chr5.3:1918127-1918146 | None:intergenic | 50.0% | |
| GGGTTCGCTGATGGAGATAA+TGG | + | chr5.3:1918106-1918125 | None:intergenic | 50.0% | |
| GTCAATGCAGGGGAAAGAGA+TGG | + | chr5.3:1917739-1917758 | None:intergenic | 50.0% | |
| TGCATTGCAGCAATCAGCAG+TGG | + | chr5.3:1917314-1917333 | None:intergenic | 50.0% | |
| ! | CTAACTTGTAGTTGCGGTCG+TGG | - | chr5.3:1917804-1917823 | MS.gene40492:intron | 50.0% |
| !! | AGAGAAGGTGTCACTGGTGA+GGG | + | chr5.3:1918058-1918077 | None:intergenic | 50.0% |
| CCACGGCTAACACCACAGTT+AGG | + | chr5.3:1917168-1917187 | None:intergenic | 55.0% | |
| CCAGGCAAGTTACAAGCACG+AGG | + | chr5.3:1917439-1917458 | None:intergenic | 55.0% | |
| CGGCTAACACCACAGTTAGG+CGG | + | chr5.3:1917165-1917184 | None:intergenic | 55.0% | |
| GACCCTCACAAGTGGAAGCA+AGG | - | chr5.3:1917339-1917358 | MS.gene40492:intron | 55.0% | |
| GCGGTCAGCAACAACTACTG+CGG | + | chr5.3:1917936-1917955 | None:intergenic | 55.0% | |
| GGTTTACCTGGAGCAGGAAG+CGG | + | chr5.3:1917613-1917632 | None:intergenic | 55.0% | |
| GTCGTGATTTGAGCGTAGGC+TGG | + | chr5.3:1917208-1917227 | None:intergenic | 55.0% | |
| GTCTCTCTACCGCCTAACTG+TGG | - | chr5.3:1917153-1917172 | MS.gene40492:CDS | 55.0% | |
| GTTAGCCGTGGCTTCGATCA+TGG | - | chr5.3:1917177-1917196 | MS.gene40492:CDS | 55.0% | |
| TCAGGCTGTGGTGACAGAGA+AGG | + | chr5.3:1918073-1918092 | None:intergenic | 55.0% | |
| TGCAGCCATGATCGAAGCCA+CGG | + | chr5.3:1917185-1917204 | None:intergenic | 55.0% | |
| TGGCGTCGTGATTTGAGCGT+AGG | + | chr5.3:1917212-1917231 | None:intergenic | 55.0% | |
| TTGACAGGACCGGCGTCTTT+CGG | - | chr5.3:1917712-1917731 | MS.gene40492:intron | 55.0% | |
| ! | CCTAACTGTGGTGTTAGCCG+TGG | - | chr5.3:1917165-1917184 | MS.gene40492:CDS | 55.0% |
| ! | CCTCGTGCTTGTAACTTGCC+TGG | - | chr5.3:1917436-1917455 | MS.gene40492:intron | 55.0% |
| !! | CAGAGAAGGTGTCACTGGTG+AGG | + | chr5.3:1918059-1918078 | None:intergenic | 55.0% |
| !! | GGATTGGTTGTCTCAGGCTG+TGG | + | chr5.3:1918085-1918104 | None:intergenic | 55.0% |
| !! | GGTGACAGAGAAGGTGTCAC+TGG | + | chr5.3:1918064-1918083 | None:intergenic | 55.0% |
| AGAGATGGCCCGAAAGACGC+CGG | + | chr5.3:1917724-1917743 | None:intergenic | 60.0% | |
| AGATCAGAGCGGCCACTTCC+GGG | + | chr5.3:1918148-1918167 | None:intergenic | 60.0% | |
| CAGATCAGAGCGGCCACTTC+CGG | + | chr5.3:1918149-1918168 | None:intergenic | 60.0% | |
| GCAGCAATCAGCAGTGGGTG+AGG | + | chr5.3:1917308-1917327 | None:intergenic | 60.0% | |
| GTGTTGCGTCGCGGTTTACC+TGG | + | chr5.3:1917625-1917644 | None:intergenic | 60.0% | |
| TGACAGGACCGGCGTCTTTC+GGG | - | chr5.3:1917713-1917732 | MS.gene40492:intron | 60.0% | |
| CCATCTGCAACGCCCGGAAG+TGG | - | chr5.3:1918133-1918152 | MS.gene40492:CDS | 65.0% | |
| CGTCGCGGTTTACCTGGAGC+AGG | + | chr5.3:1917619-1917638 | None:intergenic | 65.0% | |
| ! | CCACTTCCGGGCGTTGCAGA+TGG | + | chr5.3:1918136-1918155 | None:intergenic | 65.0% |
| GGCTCACCGCTTCCTGCTCC+AGG | - | chr5.3:1917604-1917623 | MS.gene40492:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 1917139 | 1918252 | 1917139 | ID=MS.gene40492 |
| chr5.3 | mRNA | 1917139 | 1918252 | 1917139 | ID=MS.gene40492.t1;Parent=MS.gene40492 |
| chr5.3 | exon | 1917913 | 1918252 | 1917913 | ID=MS.gene40492.t1.exon1;Parent=MS.gene40492.t1 |
| chr5.3 | CDS | 1917913 | 1918252 | 1917913 | ID=cds.MS.gene40492.t1;Parent=MS.gene40492.t1 |
| chr5.3 | exon | 1917766 | 1917792 | 1917766 | ID=MS.gene40492.t1.exon2;Parent=MS.gene40492.t1 |
| chr5.3 | CDS | 1917766 | 1917792 | 1917766 | ID=cds.MS.gene40492.t1;Parent=MS.gene40492.t1 |
| chr5.3 | exon | 1917613 | 1917672 | 1917613 | ID=MS.gene40492.t1.exon3;Parent=MS.gene40492.t1 |
| chr5.3 | CDS | 1917613 | 1917672 | 1917613 | ID=cds.MS.gene40492.t1;Parent=MS.gene40492.t1 |
| chr5.3 | exon | 1917139 | 1917350 | 1917139 | ID=MS.gene40492.t1.exon4;Parent=MS.gene40492.t1 |
| chr5.3 | CDS | 1917139 | 1917350 | 1917139 | ID=cds.MS.gene40492.t1;Parent=MS.gene40492.t1 |
| Gene Sequence |
| Protein sequence |
