Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42143.t1 | XP_003623416.1 | 98.4 | 500 | 8 | 0 | 1 | 500 | 10 | 509 | 9.50E-290 | 1005.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42143.t1 | G7KU52 | 98.4 | 500 | 8 | 0 | 1 | 500 | 10 | 509 | 6.9e-290 | 1005.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049825 | MS.gene42143 | 0.814782 | 1.29E-51 | -1.69E-46 |
| MS.gene050201 | MS.gene42143 | 0.801174 | 1.02E-48 | -1.69E-46 |
| MS.gene050807 | MS.gene42143 | 0.844838 | 5.90E-59 | -1.69E-46 |
| MS.gene050808 | MS.gene42143 | 0.816228 | 6.16E-52 | -1.69E-46 |
| MS.gene051700 | MS.gene42143 | 0.804014 | 2.65E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene42143 | 0.805101 | 1.57E-49 | -1.69E-46 |
| MS.gene051720 | MS.gene42143 | 0.806561 | 7.75E-50 | -1.69E-46 |
| MS.gene052133 | MS.gene42143 | 0.8268 | 2.22E-54 | -1.69E-46 |
| MS.gene052302 | MS.gene42143 | 0.808989 | 2.36E-50 | -1.69E-46 |
| MS.gene052358 | MS.gene42143 | -0.807014 | 6.22E-50 | -1.69E-46 |
| MS.gene052376 | MS.gene42143 | 0.805066 | 1.60E-49 | -1.69E-46 |
| MS.gene052858 | MS.gene42143 | 0.802971 | 4.36E-49 | -1.69E-46 |
| MS.gene053294 | MS.gene42143 | 0.810587 | 1.07E-50 | -1.69E-46 |
| MS.gene053599 | MS.gene42143 | 0.808453 | 3.07E-50 | -1.69E-46 |
| MS.gene053678 | MS.gene42143 | 0.803287 | 3.75E-49 | -1.69E-46 |
| MS.gene055465 | MS.gene42143 | 0.801406 | 9.14E-49 | -1.69E-46 |
| MS.gene055466 | MS.gene42143 | 0.81496 | 1.18E-51 | -1.69E-46 |
| MS.gene055468 | MS.gene42143 | 0.801457 | 8.92E-49 | -1.69E-46 |
| MS.gene057060 | MS.gene42143 | 0.803705 | 3.07E-49 | -1.69E-46 |
| MS.gene058625 | MS.gene42143 | 0.82769 | 1.36E-54 | -1.69E-46 |
| MS.gene05954 | MS.gene42143 | 0.809217 | 2.11E-50 | -1.69E-46 |
| MS.gene060619 | MS.gene42143 | 0.809029 | 2.32E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42143.t1 | MTR_7g070530 | 98.400 | 500 | 8 | 0 | 1 | 500 | 10 | 509 | 0.0 | 1021 |
| MS.gene42143.t1 | MTR_4g013290 | 65.896 | 519 | 148 | 9 | 1 | 500 | 1 | 509 | 0.0 | 655 |
| MS.gene42143.t1 | MTR_3g031200 | 57.485 | 501 | 199 | 6 | 6 | 500 | 2 | 494 | 0.0 | 570 |
| MS.gene42143.t1 | MTR_7g101130 | 26.230 | 427 | 276 | 12 | 73 | 498 | 76 | 464 | 1.02e-34 | 136 |
| MS.gene42143.t1 | MTR_1g099090 | 43.931 | 173 | 76 | 5 | 40 | 211 | 10 | 162 | 3.24e-32 | 121 |
| MS.gene42143.t1 | MTR_8g100030 | 48.193 | 83 | 43 | 0 | 80 | 162 | 53 | 135 | 1.31e-17 | 79.7 |
| MS.gene42143.t1 | MTR_7g057130 | 75.510 | 49 | 12 | 0 | 101 | 149 | 25 | 73 | 4.57e-16 | 75.9 |
| MS.gene42143.t1 | MTR_8g089585 | 33.333 | 147 | 88 | 3 | 81 | 219 | 87 | 231 | 1.22e-14 | 74.3 |
| MS.gene42143.t1 | MTR_4g093860 | 26.267 | 217 | 89 | 7 | 286 | 500 | 241 | 388 | 1.77e-14 | 75.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42143.t1 | AT5G01710 | 62.984 | 516 | 172 | 6 | 1 | 500 | 1 | 513 | 0.0 | 657 |
| MS.gene42143.t1 | AT3G53400 | 25.355 | 422 | 249 | 11 | 85 | 500 | 103 | 464 | 1.63e-28 | 118 |
| MS.gene42143.t1 | AT5G03190 | 22.863 | 503 | 317 | 14 | 3 | 500 | 37 | 473 | 3.28e-28 | 117 |
| MS.gene42143.t1 | AT5G03190 | 23.990 | 421 | 254 | 12 | 85 | 500 | 90 | 449 | 3.59e-28 | 117 |
| MS.gene42143.t1 | AT1G24480 | 39.259 | 135 | 75 | 3 | 81 | 213 | 75 | 204 | 1.65e-18 | 85.1 |
| MS.gene42143.t1 | AT4G24805 | 38.776 | 147 | 80 | 3 | 81 | 219 | 90 | 234 | 3.06e-18 | 84.7 |
| MS.gene42143.t1 | AT2G16030 | 32.479 | 117 | 74 | 2 | 70 | 186 | 72 | 183 | 1.57e-11 | 64.7 |
Find 125 sgRNAs with CRISPR-Local
Find 141 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAACTATACGTATCTTTA+CGG | 0.252227 | 7.3:-34145018 | None:intergenic |
| GTGAAATTGCATGTGTTAGA+AGG | 0.282986 | 7.3:+34145076 | MS.gene42143:CDS |
| AAAACAGTTTCATGTATATA+AGG | 0.288284 | 7.3:-34145115 | None:intergenic |
| GGGGAGCATGTTGAGGTTAA+AGG | 0.290336 | 7.3:+34145571 | MS.gene42143:CDS |
| GGTGAAACCGCTGGTGAAAT+CGG | 0.303300 | 7.3:+34144841 | MS.gene42143:CDS |
| CTCCTTATGAAAATGCTTAT+CGG | 0.309551 | 7.3:-34145461 | None:intergenic |
| ATAGCGAGACTGATTGTTTC+CGG | 0.310156 | 7.3:-34144599 | None:intergenic |
| CTAGTATAGGTTCTTGGTTT+AGG | 0.310622 | 7.3:+34145389 | MS.gene42143:CDS |
| CTTTGTGTTGAAACCGTTAC+CGG | 0.321088 | 7.3:+34144755 | MS.gene42143:CDS |
| TTCTCCGGTGAAGGCTCGTT+CGG | 0.332560 | 7.3:+34144911 | MS.gene42143:CDS |
| ATGGTTCTAGTATAGGTTCT+TGG | 0.339618 | 7.3:+34145383 | MS.gene42143:CDS |
| CATTGGTTCCTTATGCTGCT+TGG | 0.341853 | 7.3:+34145506 | MS.gene42143:CDS |
| TTTCTGCTTCTTCTCGTTGC+CGG | 0.347913 | 7.3:+34144580 | MS.gene42143:CDS |
| GAATGGAAATTGTTATGTTC+CGG | 0.362811 | 7.3:+34145192 | MS.gene42143:CDS |
| TATAAAGTATCTTTCTTCAA+TGG | 0.364263 | 7.3:+34145306 | MS.gene42143:CDS |
| TGCTGAGCCATTGATTGAAA+TGG | 0.364796 | 7.3:+34145240 | MS.gene42143:CDS |
| AATGGTTCCATTTCAATCAA+TGG | 0.369280 | 7.3:-34145247 | None:intergenic |
| AAATGGAACCATTGAAGCCT+TGG | 0.377347 | 7.3:+34145257 | MS.gene42143:CDS |
| ATTGGTTCCTTATGCTGCTT+GGG | 0.377687 | 7.3:+34145507 | MS.gene42143:CDS |
| TGGGGAAGTGGAGAAGATAA+AGG | 0.380407 | 7.3:+34145645 | MS.gene42143:CDS |
| TTCTTGAATGTCATTACAAT+AGG | 0.383434 | 7.3:+34145809 | MS.gene42143:CDS |
| ATTCCGAGGTTGTTTGAAAC+CGG | 0.383752 | 7.3:+34145760 | MS.gene42143:CDS |
| AATGGAAATTGTTATGTTCC+GGG | 0.384481 | 7.3:+34145193 | MS.gene42143:CDS |
| GTAACCGTATCAGAAGATTC+TGG | 0.392916 | 7.3:-34144478 | None:intergenic |
| AATGTAATCCAAGGCTTCAA+TGG | 0.393903 | 7.3:-34145265 | None:intergenic |
| GTGGAATTCTTGTTCATCAA+TGG | 0.398427 | 7.3:+34145920 | MS.gene42143:CDS |
| GCAGAAATCGGCGACATTGC+AGG | 0.399179 | 7.3:-34144564 | None:intergenic |
| GGCGAAGCCGGCGGTGTTTG+CGG | 0.405581 | 7.3:+34144940 | MS.gene42143:CDS |
| GAAGGGGTTTGATGGGGAAG+TGG | 0.405826 | 7.3:+34145633 | MS.gene42143:CDS |
| GAGGTTAAAGGAAGGGGAAT+GGG | 0.409053 | 7.3:+34145583 | MS.gene42143:CDS |
| TCCGGGGTATAAGAAAGATT+TGG | 0.423343 | 7.3:+34145210 | MS.gene42143:CDS |
| CAACGAGAAGAAGCAGAAAT+CGG | 0.436584 | 7.3:-34144576 | None:intergenic |
| CGTCGGAATCGCGAGGAAAT+CGG | 0.444998 | 7.3:+34144820 | MS.gene42143:CDS |
| ACCGGAGAGAGGTTCATTAC+CGG | 0.448505 | 7.3:-34144624 | None:intergenic |
| TCTCCGGTGAAGGCTCGTTC+GGG | 0.449176 | 7.3:+34144912 | MS.gene42143:CDS |
| CTCTCCGGTGAATCATCTTC+CGG | 0.450105 | 7.3:+34144638 | MS.gene42143:CDS |
| TCGATAGGGAAGGGGTTTGA+TGG | 0.450774 | 7.3:+34145625 | MS.gene42143:CDS |
| AGCCTTGGATTACATTGAAA+AGG | 0.451168 | 7.3:+34145272 | MS.gene42143:CDS |
| GTTCGGGAAGTCGGCGAAGC+CGG | 0.452260 | 7.3:+34144928 | MS.gene42143:CDS |
| TGAAATGTCTTATTCTGCTT+AGG | 0.453644 | 7.3:-34145421 | None:intergenic |
| TTCAATTCTCTTAGACAAAG+TGG | 0.459178 | 7.3:+34145901 | MS.gene42143:CDS |
| AGAAGCTATGGTTCTAGTAT+AGG | 0.468833 | 7.3:+34145376 | MS.gene42143:CDS |
| GGGGAAGTGGAGAAGATAAA+GGG | 0.473833 | 7.3:+34145646 | MS.gene42143:CDS |
| AAATACGTCATCGCCGGCCG+TGG | 0.479239 | 7.3:+34144667 | MS.gene42143:CDS |
| TTCTTCACCCAAGCAGCATA+AGG | 0.480731 | 7.3:-34145514 | None:intergenic |
| CTTTCCAGAATCTTCTGATA+CGG | 0.483053 | 7.3:+34144474 | MS.gene42143:CDS |
| AGGTATTTATATGTTGATGT+TGG | 0.484995 | 7.3:+34145349 | MS.gene42143:CDS |
| AGGAGTATGGGTTGAAGAAA+GGG | 0.486235 | 7.3:+34145479 | MS.gene42143:CDS |
| AAGGAGTATGGGTTGAAGAA+AGG | 0.486257 | 7.3:+34145478 | MS.gene42143:CDS |
| AGTGGTGAACGGATTCCGTT+TGG | 0.488237 | 7.3:+34144866 | MS.gene42143:CDS |
| TTTCGCTGCGGTGTGTTCCA+TGG | 0.488576 | 7.3:-34144444 | None:intergenic |
| GATAGGGAAGGGGTTTGATG+GGG | 0.489375 | 7.3:+34145627 | MS.gene42143:CDS |
| ACCAAATCTTTCTTATACCC+CGG | 0.491388 | 7.3:-34145211 | None:intergenic |
| TGAAATTGCATGTGTTAGAA+GGG | 0.492307 | 7.3:+34145077 | MS.gene42143:CDS |
| ATTCAACCTTTGCGGTCGAT+AGG | 0.494435 | 7.3:+34145610 | MS.gene42143:CDS |
| GATTATTATTCGAATTCGAA+TGG | 0.495620 | 7.3:+34145175 | MS.gene42143:CDS |
| GTGAAACCGCTGGTGAAATC+GGG | 0.498706 | 7.3:+34144842 | MS.gene42143:CDS |
| TTCCGAGGTTGTTTGAAACC+GGG | 0.501018 | 7.3:+34145761 | MS.gene42143:CDS |
| AGAGATGTTGTCCTGGGCAG+AGG | 0.507298 | 7.3:+34145836 | MS.gene42143:CDS |
| TGAGGTTAAAGGAAGGGGAA+TGG | 0.512292 | 7.3:+34145582 | MS.gene42143:CDS |
| ATTGCAGGACTCGCCGGCGA+TGG | 0.512709 | 7.3:-34144549 | None:intergenic |
| CTTCCCGAACGAGCCTTCAC+CGG | 0.515338 | 7.3:-34144915 | None:intergenic |
| TGAAGGCTCGTTCGGGAAGT+CGG | 0.515472 | 7.3:+34144919 | MS.gene42143:CDS |
| TTTCGTGACTTGATCGGCGG+AGG | 0.515739 | 7.3:+34144707 | MS.gene42143:CDS |
| TGTTTGCGGCGGAGATTGCT+AGG | 0.516395 | 7.3:+34144954 | MS.gene42143:CDS |
| CGATGACGTATTTGCGCCGC+CGG | 0.520322 | 7.3:-34144657 | None:intergenic |
| CGATAGGGAAGGGGTTTGAT+GGG | 0.522687 | 7.3:+34145626 | MS.gene42143:CDS |
| TTGAATGTCATTACAATAGG+TGG | 0.524370 | 7.3:+34145812 | MS.gene42143:CDS |
| GATGAAACACGGTGGATTCG+CGG | 0.524712 | 7.3:+34144979 | MS.gene42143:CDS |
| AGAAGATTCTGGAAAGAGCT+AGG | 0.524979 | 7.3:-34144467 | None:intergenic |
| ACAATCAGTCTCGCTATCTC+CGG | 0.525437 | 7.3:+34144605 | MS.gene42143:CDS |
| CATGTTGAGGTTAAAGGAAG+GGG | 0.526076 | 7.3:+34145577 | MS.gene42143:CDS |
| ATCTCCGCCGCAAACACCGC+CGG | 0.530458 | 7.3:-34144947 | None:intergenic |
| ACCTTTGCGGTCGATAGGGA+AGG | 0.531001 | 7.3:+34145615 | MS.gene42143:CDS |
| TGTTGTGATGAAAATGGATG+TGG | 0.532373 | 7.3:+34145717 | MS.gene42143:CDS |
| TTCAACCTTTGCGGTCGATA+GGG | 0.534099 | 7.3:+34145611 | MS.gene42143:CDS |
| GAAGAGTAGAAAGCCACGGC+CGG | 0.538717 | 7.3:-34144680 | None:intergenic |
| TTTGAGATTCATCGCGATCC+GGG | 0.543899 | 7.3:+34145550 | MS.gene42143:CDS |
| GGCGACATTGCAGGACTCGC+CGG | 0.544591 | 7.3:-34144555 | None:intergenic |
| TCAAACTCACCGTCACCAAA+CGG | 0.547214 | 7.3:-34144881 | None:intergenic |
| GAAAACTTATGATCAATGCT+TGG | 0.549157 | 7.3:+34145873 | MS.gene42143:CDS |
| TGGGTAGGATTCAACCTTTG+CGG | 0.551608 | 7.3:+34145602 | MS.gene42143:CDS |
| TTAACCTCAACATGCTCCCC+CGG | 0.551682 | 7.3:-34145568 | None:intergenic |
| AGGTGGCAGAGATGTTGTCC+TGG | 0.557939 | 7.3:+34145829 | MS.gene42143:CDS |
| CTTTGCGGTCGATAGGGAAG+GGG | 0.559268 | 7.3:+34145617 | MS.gene42143:CDS |
| TCCGGTAATGAACCTCTCTC+CGG | 0.561229 | 7.3:+34144623 | MS.gene42143:CDS |
| CCGCTGGTGAAATCGGGAAG+TGG | 0.562828 | 7.3:+34144848 | MS.gene42143:CDS |
| CCTTTGCGGTCGATAGGGAA+GGG | 0.563419 | 7.3:+34145616 | MS.gene42143:CDS |
| GAGGAAATCGGTGAAACCGC+TGG | 0.564776 | 7.3:+34144832 | MS.gene42143:CDS |
| AGCATGTTGAGGTTAAAGGA+AGG | 0.568688 | 7.3:+34145575 | MS.gene42143:CDS |
| GATGTTGGAGCTAGAAGCTA+TGG | 0.569584 | 7.3:+34145364 | MS.gene42143:CDS |
| TTAAAGGAAGGGGAATGGGT+AGG | 0.571476 | 7.3:+34145587 | MS.gene42143:CDS |
| CGATTTCCTCGCGATTCCGA+CGG | 0.577452 | 7.3:-34144819 | None:intergenic |
| CGGCGCAAATACGTCATCGC+CGG | 0.577591 | 7.3:+34144661 | MS.gene42143:CDS |
| CTGATACGGTTACTTCTCAC+CGG | 0.578963 | 7.3:+34144488 | MS.gene42143:CDS |
| TTGAGATTCATCGCGATCCG+GGG | 0.580598 | 7.3:+34145551 | MS.gene42143:CDS |
| GCTTACGTCATCTCCATCGC+CGG | 0.584015 | 7.3:+34144536 | MS.gene42143:CDS |
| TACTTCGAACTCCTCTGCCC+AGG | 0.584824 | 7.3:-34145847 | None:intergenic |
| CCACTTCCCGATTTCACCAG+CGG | 0.587291 | 7.3:-34144848 | None:intergenic |
| ATCTATCAAACAAATCGCCC+CGG | 0.587345 | 7.3:-34145779 | None:intergenic |
| CGGGAAGTCGGCGAAGCCGG+CGG | 0.589704 | 7.3:+34144931 | MS.gene42143:CDS |
| TCCGAGGTTGTTTGAAACCG+GGG | 0.593021 | 7.3:+34145762 | MS.gene42143:CDS |
| GCCGCCGGAAGATGATTCAC+CGG | 0.594188 | 7.3:-34144642 | None:intergenic |
| GAACGGATTCCGTTTGGTGA+CGG | 0.594862 | 7.3:+34144872 | MS.gene42143:CDS |
| GCATGTTGAGGTTAAAGGAA+GGG | 0.598675 | 7.3:+34145576 | MS.gene42143:CDS |
| CTGAGTTTGATCTTATTCCG+AGG | 0.598709 | 7.3:+34145746 | MS.gene42143:CDS |
| GTTGAAGAAAGGGCTGACAT+TGG | 0.602547 | 7.3:+34145489 | MS.gene42143:CDS |
| GAAGCCGGCGGTGTTTGCGG+CGG | 0.603669 | 7.3:+34144943 | MS.gene42143:CDS |
| ATGGAAATTGTTATGTTCCG+GGG | 0.604736 | 7.3:+34145194 | MS.gene42143:CDS |
| GGTGGCAGAGATGTTGTCCT+GGG | 0.606062 | 7.3:+34145830 | MS.gene42143:CDS |
| TGAGATTCATCGCGATCCGG+GGG | 0.617981 | 7.3:+34145552 | MS.gene42143:CDS |
| AACAGAAGAGTAGAAAGCCA+CGG | 0.629536 | 7.3:-34144684 | None:intergenic |
| GAAGATGATTCACCGGAGAG+AGG | 0.631916 | 7.3:-34144635 | None:intergenic |
| CCCTTCCCTATCGACCGCAA+AGG | 0.632938 | 7.3:-34145616 | None:intergenic |
| TGAAATCGGGAAGTGGTGAA+CGG | 0.636425 | 7.3:+34144855 | MS.gene42143:CDS |
| GCCCCGGTTTCAAACAACCT+CGG | 0.653850 | 7.3:-34145763 | None:intergenic |
| TGTGATGAAAATGGATGTGG+AGG | 0.658771 | 7.3:+34145720 | MS.gene42143:CDS |
| AAAACTCCGTCGGAATCGCG+AGG | 0.663538 | 7.3:+34144813 | MS.gene42143:CDS |
| TCCGGTGAATCATCTTCCGG+CGG | 0.674770 | 7.3:+34144641 | MS.gene42143:CDS |
| ATTGCTAGGACGATGAAACA+CGG | 0.696604 | 7.3:+34144968 | MS.gene42143:CDS |
| AACAGCGATGACGAAAACGC+CGG | 0.730964 | 7.3:-34144507 | None:intergenic |
| CGGCGGAGGTTACTTGACGA+CGG | 0.733582 | 7.3:+34144721 | MS.gene42143:CDS |
| GTGATGAAAATGGATGTGGA+GGG | 0.753325 | 7.3:+34145721 | MS.gene42143:CDS |
| GAAAGAGCTAGGTTTCGCTG+CGG | 0.754294 | 7.3:-34144456 | None:intergenic |
| GCTAGGACGATGAAACACGG+TGG | 0.815506 | 7.3:+34144971 | MS.gene42143:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTGATATAAGTTTTAAGAAT+AGG | + | chr7.3:34145329-34145348 | MS.gene42143:CDS | 15.0% |
| !! | AAAACAGTTTCATGTATATA+AGG | - | chr7.3:34145118-34145137 | None:intergenic | 20.0% |
| !!! | TATAAAGTATCTTTCTTCAA+TGG | + | chr7.3:34145306-34145325 | MS.gene42143:CDS | 20.0% |
| ! | AGGTATTTATATGTTGATGT+TGG | + | chr7.3:34145349-34145368 | MS.gene42143:CDS | 25.0% |
| ! | GATTATTATTCGAATTCGAA+TGG | + | chr7.3:34145175-34145194 | MS.gene42143:CDS | 25.0% |
| ! | TGAAACTATACGTATCTTTA+CGG | - | chr7.3:34145021-34145040 | None:intergenic | 25.0% |
| ! | TTCTTGAATGTCATTACAAT+AGG | + | chr7.3:34145809-34145828 | MS.gene42143:CDS | 25.0% |
| !!! | TGATTTTGTTGTGATGAAAA+TGG | + | chr7.3:34145711-34145730 | MS.gene42143:CDS | 25.0% |
| AATGGAAATTGTTATGTTCC+GGG | + | chr7.3:34145193-34145212 | MS.gene42143:CDS | 30.0% | |
| AATGGTTCCATTTCAATCAA+TGG | - | chr7.3:34145250-34145269 | None:intergenic | 30.0% | |
| CTCCTTATGAAAATGCTTAT+CGG | - | chr7.3:34145464-34145483 | None:intergenic | 30.0% | |
| GAAAACTTATGATCAATGCT+TGG | + | chr7.3:34145873-34145892 | MS.gene42143:CDS | 30.0% | |
| GAATGGAAATTGTTATGTTC+CGG | + | chr7.3:34145192-34145211 | MS.gene42143:CDS | 30.0% | |
| TGAAATTGCATGTGTTAGAA+GGG | + | chr7.3:34145077-34145096 | MS.gene42143:CDS | 30.0% | |
| TTCAATTCTCTTAGACAAAG+TGG | + | chr7.3:34145901-34145920 | MS.gene42143:CDS | 30.0% | |
| TTGAATGTCATTACAATAGG+TGG | + | chr7.3:34145812-34145831 | MS.gene42143:CDS | 30.0% | |
| ! | AAGCATTTTCATAAGGAGTA+TGG | + | chr7.3:34145466-34145485 | MS.gene42143:CDS | 30.0% |
| ! | GTTTTTGCTTTACGAGAAAT+CGG | + | chr7.3:34144785-34144804 | MS.gene42143:CDS | 30.0% |
| ! | TGAAATGTCTTATTCTGCTT+AGG | - | chr7.3:34145424-34145443 | None:intergenic | 30.0% |
| ! | TTCCTTTTCAATGTAATCCA+AGG | - | chr7.3:34145277-34145296 | None:intergenic | 30.0% |
| !! | AGCATTTTCATAAGGAGTAT+GGG | + | chr7.3:34145467-34145486 | MS.gene42143:CDS | 30.0% |
| AATGTAATCCAAGGCTTCAA+TGG | - | chr7.3:34145268-34145287 | None:intergenic | 35.0% | |
| ACCAAATCTTTCTTATACCC+CGG | - | chr7.3:34145214-34145233 | None:intergenic | 35.0% | |
| AGCCTTGGATTACATTGAAA+AGG | + | chr7.3:34145272-34145291 | MS.gene42143:CDS | 35.0% | |
| ATGGAAATTGTTATGTTCCG+GGG | + | chr7.3:34145194-34145213 | MS.gene42143:CDS | 35.0% | |
| CTAGTATAGGTTCTTGGTTT+AGG | + | chr7.3:34145389-34145408 | MS.gene42143:CDS | 35.0% | |
| CTTTCCAGAATCTTCTGATA+CGG | + | chr7.3:34144474-34144493 | MS.gene42143:CDS | 35.0% | |
| GTGAAATTGCATGTGTTAGA+AGG | + | chr7.3:34145076-34145095 | MS.gene42143:CDS | 35.0% | |
| GTGGAATTCTTGTTCATCAA+TGG | + | chr7.3:34145920-34145939 | MS.gene42143:CDS | 35.0% | |
| TAAAGCAAAAACATCACGTC+CGG | - | chr7.3:34144777-34144796 | None:intergenic | 35.0% | |
| TGTTGTGATGAAAATGGATG+TGG | + | chr7.3:34145717-34145736 | MS.gene42143:CDS | 35.0% | |
| ! | AGCCGATAAGCATTTTCATA+AGG | + | chr7.3:34145459-34145478 | MS.gene42143:CDS | 35.0% |
| !! | AGAAGCTATGGTTCTAGTAT+AGG | + | chr7.3:34145376-34145395 | MS.gene42143:CDS | 35.0% |
| !! | AGGGATTTGATTTTGCGAAT+TGG | + | chr7.3:34145665-34145684 | MS.gene42143:CDS | 35.0% |
| !! | ATGGTTCTAGTATAGGTTCT+TGG | + | chr7.3:34145383-34145402 | MS.gene42143:CDS | 35.0% |
| !! | GAGTTTGATTTTGTGTTCTC+CGG | + | chr7.3:34144896-34144915 | MS.gene42143:CDS | 35.0% |
| !! | TCTGTTTTTCGTGACTTGAT+CGG | + | chr7.3:34144701-34144720 | MS.gene42143:CDS | 35.0% |
| AAAAACATCACGTCCGGTAA+CGG | - | chr7.3:34144771-34144790 | None:intergenic | 40.0% | |
| AAATGGAACCATTGAAGCCT+TGG | + | chr7.3:34145257-34145276 | MS.gene42143:CDS | 40.0% | |
| AACAGAAGAGTAGAAAGCCA+CGG | - | chr7.3:34144687-34144706 | None:intergenic | 40.0% | |
| AGCATGTTGAGGTTAAAGGA+AGG | + | chr7.3:34145575-34145594 | MS.gene42143:CDS | 40.0% | |
| ATAGCGAGACTGATTGTTTC+CGG | - | chr7.3:34144602-34144621 | None:intergenic | 40.0% | |
| ATCGGAGTAAAAAACTCCGT+CGG | + | chr7.3:34144803-34144822 | MS.gene42143:CDS | 40.0% | |
| ATCTATCAAACAAATCGCCC+CGG | - | chr7.3:34145782-34145801 | None:intergenic | 40.0% | |
| ATTGCTAGGACGATGAAACA+CGG | + | chr7.3:34144968-34144987 | MS.gene42143:CDS | 40.0% | |
| CAACGAGAAGAAGCAGAAAT+CGG | - | chr7.3:34144579-34144598 | None:intergenic | 40.0% | |
| CATGTTGAGGTTAAAGGAAG+GGG | + | chr7.3:34145577-34145596 | MS.gene42143:CDS | 40.0% | |
| CTGAGTTTGATCTTATTCCG+AGG | + | chr7.3:34145746-34145765 | MS.gene42143:CDS | 40.0% | |
| CTTTGTGTTGAAACCGTTAC+CGG | + | chr7.3:34144755-34144774 | MS.gene42143:CDS | 40.0% | |
| GCATGTTGAGGTTAAAGGAA+GGG | + | chr7.3:34145576-34145595 | MS.gene42143:CDS | 40.0% | |
| GTAACCGTATCAGAAGATTC+TGG | - | chr7.3:34144481-34144500 | None:intergenic | 40.0% | |
| GTGATGAAAATGGATGTGGA+GGG | + | chr7.3:34145721-34145740 | MS.gene42143:CDS | 40.0% | |
| TCCGGGGTATAAGAAAGATT+TGG | + | chr7.3:34145210-34145229 | MS.gene42143:CDS | 40.0% | |
| TGTGATGAAAATGGATGTGG+AGG | + | chr7.3:34145720-34145739 | MS.gene42143:CDS | 40.0% | |
| ! | AAGGAGTATGGGTTGAAGAA+AGG | + | chr7.3:34145478-34145497 | MS.gene42143:CDS | 40.0% |
| ! | AGAAGATTCTGGAAAGAGCT+AGG | - | chr7.3:34144470-34144489 | None:intergenic | 40.0% |
| ! | AGGAGTATGGGTTGAAGAAA+GGG | + | chr7.3:34145479-34145498 | MS.gene42143:CDS | 40.0% |
| ! | ATTCCGAGGTTGTTTGAAAC+CGG | + | chr7.3:34145760-34145779 | MS.gene42143:CDS | 40.0% |
| ! | ATTGGTTCCTTATGCTGCTT+GGG | + | chr7.3:34145507-34145526 | MS.gene42143:CDS | 40.0% |
| ! | TGCTGAGCCATTGATTGAAA+TGG | + | chr7.3:34145240-34145259 | MS.gene42143:CDS | 40.0% |
| !!! | TTTTGAGATTCATCGCGATC+CGG | + | chr7.3:34145549-34145568 | MS.gene42143:CDS | 40.0% |
| ACAATCAGTCTCGCTATCTC+CGG | + | chr7.3:34144605-34144624 | MS.gene42143:CDS | 45.0% | |
| ATTCAACCTTTGCGGTCGAT+AGG | + | chr7.3:34145610-34145629 | MS.gene42143:CDS | 45.0% | |
| CTGATACGGTTACTTCTCAC+CGG | + | chr7.3:34144488-34144507 | MS.gene42143:CDS | 45.0% | |
| GAGGTTAAAGGAAGGGGAAT+GGG | + | chr7.3:34145583-34145602 | MS.gene42143:CDS | 45.0% | |
| GATGTTGGAGCTAGAAGCTA+TGG | + | chr7.3:34145364-34145383 | MS.gene42143:CDS | 45.0% | |
| GGGGAAGTGGAGAAGATAAA+GGG | + | chr7.3:34145646-34145665 | MS.gene42143:CDS | 45.0% | |
| GTTGAAGAAAGGGCTGACAT+TGG | + | chr7.3:34145489-34145508 | MS.gene42143:CDS | 45.0% | |
| TCAAACTCACCGTCACCAAA+CGG | - | chr7.3:34144884-34144903 | None:intergenic | 45.0% | |
| TGAAATCGGGAAGTGGTGAA+CGG | + | chr7.3:34144855-34144874 | MS.gene42143:CDS | 45.0% | |
| TGAGGTTAAAGGAAGGGGAA+TGG | + | chr7.3:34145582-34145601 | MS.gene42143:CDS | 45.0% | |
| TGGGGAAGTGGAGAAGATAA+AGG | + | chr7.3:34145645-34145664 | MS.gene42143:CDS | 45.0% | |
| TGGGTAGGATTCAACCTTTG+CGG | + | chr7.3:34145602-34145621 | MS.gene42143:CDS | 45.0% | |
| TTAAAGGAAGGGGAATGGGT+AGG | + | chr7.3:34145587-34145606 | MS.gene42143:CDS | 45.0% | |
| TTCAACCTTTGCGGTCGATA+GGG | + | chr7.3:34145611-34145630 | MS.gene42143:CDS | 45.0% | |
| TTCTTCACCCAAGCAGCATA+AGG | - | chr7.3:34145517-34145536 | None:intergenic | 45.0% | |
| TTTCTGCTTCTTCTCGTTGC+CGG | + | chr7.3:34144580-34144599 | MS.gene42143:CDS | 45.0% | |
| ! | GATTTTGTGTTCTCCGGTGA+AGG | + | chr7.3:34144902-34144921 | MS.gene42143:CDS | 45.0% |
| ! | GTTTTTCGTGACTTGATCGG+CGG | + | chr7.3:34144704-34144723 | MS.gene42143:CDS | 45.0% |
| ! | TTCCGAGGTTGTTTGAAACC+GGG | + | chr7.3:34145761-34145780 | MS.gene42143:CDS | 45.0% |
| ! | TTTGAGATTCATCGCGATCC+GGG | + | chr7.3:34145550-34145569 | MS.gene42143:CDS | 45.0% |
| !! | CATTGGTTCCTTATGCTGCT+TGG | + | chr7.3:34145506-34145525 | MS.gene42143:CDS | 45.0% |
| AACAGCGATGACGAAAACGC+CGG | - | chr7.3:34144510-34144529 | None:intergenic | 50.0% | |
| ACCGGAGAGAGGTTCATTAC+CGG | - | chr7.3:34144627-34144646 | None:intergenic | 50.0% | |
| CGATAGGGAAGGGGTTTGAT+GGG | + | chr7.3:34145626-34145645 | MS.gene42143:CDS | 50.0% | |
| CTCTCCGGTGAATCATCTTC+CGG | + | chr7.3:34144638-34144657 | MS.gene42143:CDS | 50.0% | |
| GAAAGAGCTAGGTTTCGCTG+CGG | - | chr7.3:34144459-34144478 | None:intergenic | 50.0% | |
| GAAGATGATTCACCGGAGAG+AGG | - | chr7.3:34144638-34144657 | None:intergenic | 50.0% | |
| GATAGGGAAGGGGTTTGATG+GGG | + | chr7.3:34145627-34145646 | MS.gene42143:CDS | 50.0% | |
| GGTGAAACCGCTGGTGAAAT+CGG | + | chr7.3:34144841-34144860 | MS.gene42143:CDS | 50.0% | |
| GTGAAACCGCTGGTGAAATC+GGG | + | chr7.3:34144842-34144861 | MS.gene42143:CDS | 50.0% | |
| TCCGGTAATGAACCTCTCTC+CGG | + | chr7.3:34144623-34144642 | MS.gene42143:CDS | 50.0% | |
| TCGATAGGGAAGGGGTTTGA+TGG | + | chr7.3:34145625-34145644 | MS.gene42143:CDS | 50.0% | |
| TTAACCTCAACATGCTCCCC+CGG | - | chr7.3:34145571-34145590 | None:intergenic | 50.0% | |
| TTGAGATTCATCGCGATCCG+GGG | + | chr7.3:34145551-34145570 | MS.gene42143:CDS | 50.0% | |
| ! | AGTGGTGAACGGATTCCGTT+TGG | + | chr7.3:34144866-34144885 | MS.gene42143:CDS | 50.0% |
| ! | GAACGGATTCCGTTTGGTGA+CGG | + | chr7.3:34144872-34144891 | MS.gene42143:CDS | 50.0% |
| ! | GATGAAACACGGTGGATTCG+CGG | + | chr7.3:34144979-34144998 | MS.gene42143:CDS | 50.0% |
| ! | GGGGAGCATGTTGAGGTTAA+AGG | + | chr7.3:34145571-34145590 | MS.gene42143:CDS | 50.0% |
| ! | TCCGAGGTTGTTTGAAACCG+GGG | + | chr7.3:34145762-34145781 | MS.gene42143:CDS | 50.0% |
| AAAACTCCGTCGGAATCGCG+AGG | + | chr7.3:34144813-34144832 | MS.gene42143:CDS | 55.0% | |
| ACCTTTGCGGTCGATAGGGA+AGG | + | chr7.3:34145615-34145634 | MS.gene42143:CDS | 55.0% | |
| AGAGATGTTGTCCTGGGCAG+AGG | + | chr7.3:34145836-34145855 | MS.gene42143:CDS | 55.0% | |
| AGGTGGCAGAGATGTTGTCC+TGG | + | chr7.3:34145829-34145848 | MS.gene42143:CDS | 55.0% | |
| CCACTTCCCGATTTCACCAG+CGG | - | chr7.3:34144851-34144870 | None:intergenic | 55.0% | |
| CCTTTGCGGTCGATAGGGAA+GGG | + | chr7.3:34145616-34145635 | MS.gene42143:CDS | 55.0% | |
| CGATTTCCTCGCGATTCCGA+CGG | - | chr7.3:34144822-34144841 | None:intergenic | 55.0% | |
| CGTCGGAATCGCGAGGAAAT+CGG | + | chr7.3:34144820-34144839 | MS.gene42143:CDS | 55.0% | |
| CTTTGCGGTCGATAGGGAAG+GGG | + | chr7.3:34145617-34145636 | MS.gene42143:CDS | 55.0% | |
| GAAGAGTAGAAAGCCACGGC+CGG | - | chr7.3:34144683-34144702 | None:intergenic | 55.0% | |
| GAAGGGGTTTGATGGGGAAG+TGG | + | chr7.3:34145633-34145652 | MS.gene42143:CDS | 55.0% | |
| GAGGAAATCGGTGAAACCGC+TGG | + | chr7.3:34144832-34144851 | MS.gene42143:CDS | 55.0% | |
| GCAGAAATCGGCGACATTGC+AGG | - | chr7.3:34144567-34144586 | None:intergenic | 55.0% | |
| GCCCCGGTTTCAAACAACCT+CGG | - | chr7.3:34145766-34145785 | None:intergenic | 55.0% | |
| GCTAGGACGATGAAACACGG+TGG | + | chr7.3:34144971-34144990 | MS.gene42143:CDS | 55.0% | |
| GCTTACGTCATCTCCATCGC+CGG | + | chr7.3:34144536-34144555 | MS.gene42143:CDS | 55.0% | |
| GGTGGCAGAGATGTTGTCCT+GGG | + | chr7.3:34145830-34145849 | MS.gene42143:CDS | 55.0% | |
| TACTTCGAACTCCTCTGCCC+AGG | - | chr7.3:34145850-34145869 | None:intergenic | 55.0% | |
| TCCGGTGAATCATCTTCCGG+CGG | + | chr7.3:34144641-34144660 | MS.gene42143:CDS | 55.0% | |
| TGAAGGCTCGTTCGGGAAGT+CGG | + | chr7.3:34144919-34144938 | MS.gene42143:CDS | 55.0% | |
| TGAGATTCATCGCGATCCGG+GGG | + | chr7.3:34145552-34145571 | MS.gene42143:CDS | 55.0% | |
| TGTTTGCGGCGGAGATTGCT+AGG | + | chr7.3:34144954-34144973 | MS.gene42143:CDS | 55.0% | |
| TTCTCCGGTGAAGGCTCGTT+CGG | + | chr7.3:34144911-34144930 | MS.gene42143:CDS | 55.0% | |
| TTTCGTGACTTGATCGGCGG+AGG | + | chr7.3:34144707-34144726 | MS.gene42143:CDS | 55.0% | |
| AAATACGTCATCGCCGGCCG+TGG | + | chr7.3:34144667-34144686 | MS.gene42143:CDS | 60.0% | |
| CCCTTCCCTATCGACCGCAA+AGG | - | chr7.3:34145619-34145638 | None:intergenic | 60.0% | |
| CCGCTGGTGAAATCGGGAAG+TGG | + | chr7.3:34144848-34144867 | MS.gene42143:CDS | 60.0% | |
| CGATGACGTATTTGCGCCGC+CGG | - | chr7.3:34144660-34144679 | None:intergenic | 60.0% | |
| CGGCGCAAATACGTCATCGC+CGG | + | chr7.3:34144661-34144680 | MS.gene42143:CDS | 60.0% | |
| CGGCGGAGGTTACTTGACGA+CGG | + | chr7.3:34144721-34144740 | MS.gene42143:CDS | 60.0% | |
| CTTCCCGAACGAGCCTTCAC+CGG | - | chr7.3:34144918-34144937 | None:intergenic | 60.0% | |
| GCCGCCGGAAGATGATTCAC+CGG | - | chr7.3:34144645-34144664 | None:intergenic | 60.0% | |
| TCTCCGGTGAAGGCTCGTTC+GGG | + | chr7.3:34144912-34144931 | MS.gene42143:CDS | 60.0% | |
| ATCTCCGCCGCAAACACCGC+CGG | - | chr7.3:34144950-34144969 | None:intergenic | 65.0% | |
| ATTGCAGGACTCGCCGGCGA+TGG | - | chr7.3:34144552-34144571 | None:intergenic | 65.0% | |
| GGCGACATTGCAGGACTCGC+CGG | - | chr7.3:34144558-34144577 | None:intergenic | 65.0% | |
| GTTCGGGAAGTCGGCGAAGC+CGG | + | chr7.3:34144928-34144947 | MS.gene42143:CDS | 65.0% | |
| ! | CGATCCGGGGGAGCATGTTG+AGG | + | chr7.3:34145564-34145583 | MS.gene42143:CDS | 65.0% |
| GAAGCCGGCGGTGTTTGCGG+CGG | + | chr7.3:34144943-34144962 | MS.gene42143:CDS | 70.0% | |
| GGCGAAGCCGGCGGTGTTTG+CGG | + | chr7.3:34144940-34144959 | MS.gene42143:CDS | 70.0% | |
| CGGGAAGTCGGCGAAGCCGG+CGG | + | chr7.3:34144931-34144950 | MS.gene42143:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 34144446 | 34145948 | 34144446 | ID=MS.gene42143 |
| chr7.3 | mRNA | 34144446 | 34145948 | 34144446 | ID=MS.gene42143.t1;Parent=MS.gene42143 |
| chr7.3 | exon | 34144446 | 34145948 | 34144446 | ID=MS.gene42143.t1.exon1;Parent=MS.gene42143.t1 |
| chr7.3 | CDS | 34144446 | 34145948 | 34144446 | ID=cds.MS.gene42143.t1;Parent=MS.gene42143.t1 |
| Gene Sequence |
| Protein sequence |
