Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42564.t1 | XP_024625196.1 | 86.9 | 312 | 39 | 1 | 1 | 312 | 1 | 310 | 7.60E-144 | 520 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42564.t1 | A0A396H3E2 | 86.9 | 312 | 39 | 1 | 1 | 312 | 1 | 310 | 5.5e-144 | 520.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052954 | MS.gene42564 | 0.817495 | 3.20E-52 | -1.69E-46 |
| MS.gene053008 | MS.gene42564 | 0.804342 | 2.26E-49 | -1.69E-46 |
| MS.gene05364 | MS.gene42564 | 0.805133 | 1.55E-49 | -1.69E-46 |
| MS.gene053931 | MS.gene42564 | 0.826231 | 3.04E-54 | -1.69E-46 |
| MS.gene054994 | MS.gene42564 | 0.804359 | 2.24E-49 | -1.69E-46 |
| MS.gene055841 | MS.gene42564 | 0.801705 | 7.94E-49 | -1.69E-46 |
| MS.gene057208 | MS.gene42564 | 0.839201 | 1.83E-57 | -1.69E-46 |
| MS.gene057392 | MS.gene42564 | 0.815914 | 7.24E-52 | -1.69E-46 |
| MS.gene057855 | MS.gene42564 | 0.815701 | 8.08E-52 | -1.69E-46 |
| MS.gene058008 | MS.gene42564 | 0.829481 | 5.03E-55 | -1.69E-46 |
| MS.gene058009 | MS.gene42564 | 0.836808 | 7.53E-57 | -1.69E-46 |
| MS.gene058781 | MS.gene42564 | 0.83682 | 7.48E-57 | -1.69E-46 |
| MS.gene058783 | MS.gene42564 | 0.85448 | 1.20E-61 | -1.69E-46 |
| MS.gene058979 | MS.gene42564 | 0.814478 | 1.51E-51 | -1.69E-46 |
| MS.gene060244 | MS.gene42564 | 0.839178 | 1.85E-57 | -1.69E-46 |
| MS.gene060935 | MS.gene42564 | 0.846711 | 1.83E-59 | -1.69E-46 |
| MS.gene060937 | MS.gene42564 | 0.824701 | 7.00E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42564.t1 | MTR_7g090860 | 92.308 | 312 | 22 | 1 | 1 | 312 | 1 | 310 | 0.0 | 522 |
| MS.gene42564.t1 | MTR_7g090780 | 77.848 | 316 | 64 | 4 | 1 | 312 | 1 | 314 | 5.40e-156 | 439 |
| MS.gene42564.t1 | MTR_7g090800 | 67.722 | 316 | 89 | 7 | 1 | 312 | 1 | 307 | 2.87e-141 | 401 |
| MS.gene42564.t1 | MTR_7g090830 | 71.918 | 292 | 70 | 4 | 24 | 312 | 7 | 289 | 1.78e-137 | 390 |
| MS.gene42564.t1 | MTR_7g090820 | 63.548 | 310 | 87 | 7 | 1 | 310 | 1 | 284 | 1.20e-121 | 353 |
| MS.gene42564.t1 | MTR_7g090775 | 72.400 | 250 | 62 | 3 | 35 | 282 | 14 | 258 | 4.33e-119 | 343 |
| MS.gene42564.t1 | MTR_7g090780 | 76.587 | 252 | 54 | 3 | 65 | 312 | 1 | 251 | 7.81e-114 | 329 |
| MS.gene42564.t1 | MTR_1g051750 | 43.172 | 227 | 105 | 6 | 5 | 231 | 4 | 206 | 5.58e-52 | 171 |
| MS.gene42564.t1 | MTR_3g023510 | 31.780 | 236 | 126 | 6 | 26 | 247 | 24 | 238 | 9.31e-31 | 119 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene42564.t1 | AT5G03990 | 40.838 | 191 | 90 | 3 | 1 | 171 | 1 | 188 | 1.93e-40 | 143 |
| MS.gene42564.t1 | AT3G51940 | 39.286 | 112 | 67 | 1 | 26 | 136 | 20 | 131 | 7.87e-24 | 101 |
| MS.gene42564.t1 | AT3G51940 | 42.424 | 99 | 56 | 1 | 39 | 136 | 37 | 135 | 2.59e-23 | 99.8 |
| MS.gene42564.t1 | AT5G03990 | 48.352 | 91 | 44 | 1 | 65 | 155 | 1 | 88 | 2.03e-20 | 88.6 |
Find 94 sgRNAs with CRISPR-Local
Find 160 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTGATTCTGAACTTTATT+TGG | 0.166699 | 7.1:+16456753 | MS.gene42564:CDS |
| CATCCCAGAGCAGCATAATT+TGG | 0.225014 | 7.1:-16456940 | None:intergenic |
| GAAATAGTGGGAGAGGAAAT+TGG | 0.249350 | 7.1:+16457130 | MS.gene42564:CDS |
| TCCTCTTCTGGTCTTGGATT+GGG | 0.249489 | 7.1:+16456865 | MS.gene42564:CDS |
| GAGGGGAAAATTTGCTTATA+AGG | 0.264683 | 7.1:+16457293 | MS.gene42564:CDS |
| AATCAGTCCTCTTCTGGTCT+TGG | 0.266278 | 7.1:+16456859 | MS.gene42564:CDS |
| TGATTCTGGAAATGGATAAT+TGG | 0.273700 | 7.1:+16455520 | None:intergenic |
| TGCATCCCAAAGTGGTAAAC+TGG | 0.283430 | 7.1:+16456599 | MS.gene42564:CDS |
| CTCTTGAATCAGTCCTCTTC+TGG | 0.284774 | 7.1:+16456853 | MS.gene42564:CDS |
| GGAGGAAGAGGAGGAGGTGG+GGG | 0.291481 | 7.1:+16457267 | MS.gene42564:CDS |
| AATGGAGGAAGAGGAGGAGG+TGG | 0.306932 | 7.1:+16457264 | MS.gene42564:CDS |
| TCGTCCCAGTTTACCACTTT+GGG | 0.328360 | 7.1:-16456604 | None:intergenic |
| AAAGAATATGGATGGCAAAA+TGG | 0.329913 | 7.1:+16457036 | MS.gene42564:CDS |
| AAATAGTGGGAGAGGAAATT+GGG | 0.332117 | 7.1:+16457131 | MS.gene42564:CDS |
| GAACATGCTGCAAAAGAATA+TGG | 0.344072 | 7.1:+16457024 | MS.gene42564:CDS |
| CGCCCCAACATAGAAGAAAA+AGG | 0.348181 | 7.1:+16456799 | MS.gene42564:CDS |
| GATGATGGTTACTGATCCTT+TGG | 0.349954 | 7.1:-16455551 | None:intergenic |
| GTCCTCTTCTGGTCTTGGAT+TGG | 0.351125 | 7.1:+16456864 | MS.gene42564:CDS |
| TGGAGGAAGAGGAGGAGGTG+GGG | 0.358688 | 7.1:+16457266 | MS.gene42564:CDS |
| GGATTGGGACCTACTGGATG+GGG | 0.378858 | 7.1:+16456880 | MS.gene42564:CDS |
| AATAGAGGAGGAAGAAGAAA+TGG | 0.384129 | 7.1:+16457246 | MS.gene42564:CDS |
| TATAACGGAAAACCACCTTT+AGG | 0.390153 | 7.1:+16455606 | MS.gene42564:CDS |
| TGAACCAAATTATGCTGCTC+TGG | 0.390673 | 7.1:+16456936 | MS.gene42564:CDS |
| ACATCATCTATGTAAATGTT+AGG | 0.394819 | 7.1:-16456715 | None:intergenic |
| GATTGGGACCTACTGGATGG+GGG | 0.403956 | 7.1:+16456881 | MS.gene42564:CDS |
| GGAGAGGAAATTGGGGAACA+TGG | 0.411161 | 7.1:+16457139 | MS.gene42564:CDS |
| ATGGAGGAAGAGGAGGAGGT+GGG | 0.413896 | 7.1:+16457265 | MS.gene42564:CDS |
| GGAAGAAGAAATGGAGGAAG+AGG | 0.415987 | 7.1:+16457255 | MS.gene42564:CDS |
| GGTCTTGGATTGGGACCTAC+TGG | 0.427547 | 7.1:+16456874 | MS.gene42564:CDS |
| AAATGGTCAGAATGATTCTC+AGG | 0.431182 | 7.1:+16457053 | MS.gene42564:CDS |
| GTCGTCCCAGTTTACCACTT+TGG | 0.436251 | 7.1:-16456605 | None:intergenic |
| TGGAATCAGAGGGAGCGATA+TGG | 0.436926 | 7.1:+16457078 | MS.gene42564:CDS |
| AAAATAATGAAACAAACTCT+TGG | 0.438543 | 7.1:+16456980 | MS.gene42564:CDS |
| GGTTTCCAACAGTGCCTTTG+TGG | 0.441064 | 7.1:+16456503 | MS.gene42564:CDS |
| TTGGATTGGGACCTACTGGA+TGG | 0.441158 | 7.1:+16456878 | MS.gene42564:CDS |
| AAGTATCAAGGAAGAAATAG+TGG | 0.441466 | 7.1:+16457117 | MS.gene42564:CDS |
| TGGATTGGGACCTACTGGAT+GGG | 0.442806 | 7.1:+16456879 | MS.gene42564:CDS |
| CTTCGGTGGGCTCAGTTCCA+TGG | 0.462514 | 7.1:+16456542 | MS.gene42564:CDS |
| AGAAATGGAGGAAGAGGAGG+AGG | 0.467887 | 7.1:+16457261 | MS.gene42564:CDS |
| CTGAGATCAACAACATTCCC+TGG | 0.470295 | 7.1:+16456674 | MS.gene42564:CDS |
| AAATAATGAAACAAACTCTT+GGG | 0.477297 | 7.1:+16456981 | MS.gene42564:CDS |
| TCTATGTAAATGTTAGGATC+AGG | 0.480083 | 7.1:-16456709 | None:intergenic |
| TTCTGAACTTTATTTGGATG+TGG | 0.480333 | 7.1:+16456759 | MS.gene42564:CDS |
| GGAAATTGGGGAACATGGGA+TGG | 0.480974 | 7.1:+16457144 | MS.gene42564:CDS |
| CAAATTATGCTGCTCTGGGA+TGG | 0.490209 | 7.1:+16456941 | MS.gene42564:CDS |
| AGAAAGAAAACAACATGTCT+TGG | 0.492809 | 7.1:+16457178 | MS.gene42564:CDS |
| AGAGGAGGAAGAAGAAATGG+AGG | 0.503196 | 7.1:+16457249 | MS.gene42564:CDS |
| GTTTCCAACAGTGCCTTTGT+GGG | 0.503784 | 7.1:+16456504 | MS.gene42564:CDS |
| CAAGGAAGAAATAGTGGGAG+AGG | 0.507156 | 7.1:+16457123 | MS.gene42564:CDS |
| ATTGGGACCTACTGGATGGG+GGG | 0.510955 | 7.1:+16456882 | MS.gene42564:CDS |
| ATCAGGCAATGGTATGTCCC+AGG | 0.512479 | 7.1:-16456692 | None:intergenic |
| AGAAGAAATGGAGGAAGAGG+AGG | 0.513878 | 7.1:+16457258 | MS.gene42564:CDS |
| GCAGCATAATTTGGTTCAGA+AGG | 0.514407 | 7.1:-16456931 | None:intergenic |
| AATGAGTATCAGATGAATAG+AGG | 0.514889 | 7.1:+16457231 | MS.gene42564:CDS |
| TCCTCCTTCTCATCCTATAA+CGG | 0.515407 | 7.1:+16455591 | MS.gene42564:CDS |
| CCATCATCAAGTGGGTCAGT+GGG | 0.517302 | 7.1:+16455566 | MS.gene42564:CDS |
| CCCACTGACCCACTTGATGA+TGG | 0.517715 | 7.1:-16455566 | None:intergenic |
| GGAGAGGCGGCTGTGACTCT+AGG | 0.522716 | 7.1:+16456820 | MS.gene42564:CDS |
| AAATTATGCTGCTCTGGGAT+GGG | 0.527002 | 7.1:+16456942 | MS.gene42564:CDS |
| GAGAGGAAATTGGGGAACAT+GGG | 0.531170 | 7.1:+16457140 | MS.gene42564:CDS |
| GTCAGAATGATTCTCAGGGA+TGG | 0.540162 | 7.1:+16457058 | MS.gene42564:CDS |
| GAACCAAATTATGCTGCTCT+GGG | 0.563912 | 7.1:+16456937 | MS.gene42564:CDS |
| GACTTGTATAACAAGTATCA+AGG | 0.564906 | 7.1:+16457105 | MS.gene42564:CDS |
| ACCATCATCAAGTGGGTCAG+TGG | 0.567874 | 7.1:+16455565 | MS.gene42564:CDS |
| ATCTTCATTTACCATGCACT+AGG | 0.571296 | 7.1:-16457324 | None:intergenic |
| TCTTCTATTAGCTTTCGCCA+TGG | 0.571899 | 7.1:-16456559 | None:intergenic |
| TCCCAATCCAAGACCAGAAG+AGG | 0.573717 | 7.1:-16456866 | None:intergenic |
| AAGAACCATGGATATCATCA+TGG | 0.588202 | 7.1:+16457204 | MS.gene42564:CDS |
| AATAGTGGGAGAGGAAATTG+GGG | 0.595211 | 7.1:+16457132 | MS.gene42564:CDS |
| ATGCTGCAAAAGAATATGGA+TGG | 0.597894 | 7.1:+16457028 | MS.gene42564:CDS |
| TAGTGCCATGATGATATCCA+TGG | 0.599866 | 7.1:-16457209 | None:intergenic |
| ATTCTCAGGGATGGAATCAG+AGG | 0.601746 | 7.1:+16457067 | MS.gene42564:CDS |
| GAGTATCAGATGAATAGAGG+AGG | 0.605987 | 7.1:+16457234 | MS.gene42564:CDS |
| GATCAGTAACCATCATCAAG+TGG | 0.608162 | 7.1:+16455557 | MS.gene42564:CDS |
| GCATCCCAAAGTGGTAAACT+GGG | 0.611168 | 7.1:+16456600 | MS.gene42564:CDS |
| ATCAGTAACCATCATCAAGT+GGG | 0.619741 | 7.1:+16455558 | MS.gene42564:CDS |
| GAAAGCTAATAGAAGACAAG+AGG | 0.621891 | 7.1:+16456566 | MS.gene42564:CDS |
| AGTATCAAGGAAGAAATAGT+GGG | 0.622344 | 7.1:+16457118 | MS.gene42564:CDS |
| GGACGACTCTGCTGTCAAAG+AGG | 0.623703 | 7.1:+16456621 | MS.gene42564:CDS |
| GGATGTGGAAATAGAAGCAG+AGG | 0.625331 | 7.1:+16456774 | MS.gene42564:CDS |
| TGAGATCAACAACATTCCCT+GGG | 0.626226 | 7.1:+16456675 | MS.gene42564:CDS |
| TCCGTTATAGGATGAGAAGG+AGG | 0.628511 | 7.1:-16455592 | None:intergenic |
| AATGGTCAGAATGATTCTCA+GGG | 0.628914 | 7.1:+16457054 | MS.gene42564:CDS |
| ATGTCTTGGTCTAAGAACCA+TGG | 0.637891 | 7.1:+16457192 | MS.gene42564:CDS |
| CAGAAGAGGACTGATTCAAG+AGG | 0.638374 | 7.1:-16456852 | None:intergenic |
| AATCAGAGGGAGCGATATGG+TGG | 0.639116 | 7.1:+16457081 | MS.gene42564:CDS |
| TTCTCAGGGATGGAATCAGA+GGG | 0.642433 | 7.1:+16457068 | MS.gene42564:CDS |
| CATGTATATGCATCCCAAAG+TGG | 0.643906 | 7.1:+16456591 | MS.gene42564:CDS |
| TCAGGCAATGGTATGTCCCA+GGG | 0.651273 | 7.1:-16456691 | None:intergenic |
| AGGTTGCTACTCCTAGTGCA+TGG | 0.652070 | 7.1:+16457313 | MS.gene42564:CDS |
| ATAATTGGAGAAGAAACCAA+AGG | 0.669189 | 7.1:+16455535 | MS.gene42564:CDS |
| CATCATCAAGTGGGTCAGTG+GGG | 0.675320 | 7.1:+16455567 | MS.gene42564:CDS |
| TAAATGTTAGGATCAGGCAA+TGG | 0.686387 | 7.1:-16456703 | None:intergenic |
| AGAATGAACGAACCTAAAGG+TGG | 0.691864 | 7.1:-16455618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTGATTCTATTTATTCTTT+TGG | + | chr7.1:16456467-16456486 | MS.gene42564:intron | 15.0% |
| !!! | GTTTTTTGGTTTTAAAAATT+GGG | + | chr7.1:16455872-16455891 | MS.gene42564:intron | 15.0% |
| !!! | TTTTTTGGTTTTAAAAATTG+GGG | + | chr7.1:16455873-16455892 | MS.gene42564:intron | 15.0% |
| !! | AAAATAATGAAACAAACTCT+TGG | + | chr7.1:16456980-16456999 | MS.gene42564:CDS | 20.0% |
| !! | AAATAATGAAACAAACTCTT+GGG | + | chr7.1:16456981-16457000 | MS.gene42564:CDS | 20.0% |
| !! | AATAAGCAATTTAATGACAT+AGG | - | chr7.1:16456071-16456090 | None:intergenic | 20.0% |
| !! | ATAAGCAATTTAATGACATA+GGG | - | chr7.1:16456070-16456089 | None:intergenic | 20.0% |
| !! | TGCAACAAAACAAATTTAAA+AGG | - | chr7.1:16455698-16455717 | None:intergenic | 20.0% |
| !!! | AGAATCAATTGATAGTTTAA+GGG | - | chr7.1:16456456-16456475 | None:intergenic | 20.0% |
| !!! | GGTTTTTTGGTTTTAAAAAT+TGG | + | chr7.1:16455871-16455890 | MS.gene42564:intron | 20.0% |
| !!! | TAGAATCAATTGATAGTTTA+AGG | - | chr7.1:16456457-16456476 | None:intergenic | 20.0% |
| !!! | TTGTTTCATTATTTTCATGT+TGG | - | chr7.1:16456975-16456994 | None:intergenic | 20.0% |
| ! | AATATCTAGAAATCATCTCT+TGG | + | chr7.1:16456025-16456044 | MS.gene42564:intron | 25.0% |
| ! | ACATCATCTATGTAAATGTT+AGG | - | chr7.1:16456718-16456737 | None:intergenic | 25.0% |
| !! | ATCTGAAAATGTCTTGATTT+TGG | + | chr7.1:16456155-16456174 | MS.gene42564:intron | 25.0% |
| !!! | ACATGAATCTGTTTTGATTA+TGG | + | chr7.1:16456123-16456142 | MS.gene42564:intron | 25.0% |
| !!! | TGATCACTTTACTTTTGAAT+TGG | + | chr7.1:16455839-16455858 | MS.gene42564:intron | 25.0% |
| !!! | TGTTGATTCTGAACTTTATT+TGG | + | chr7.1:16456753-16456772 | MS.gene42564:CDS | 25.0% |
| AAAGAATATGGATGGCAAAA+TGG | + | chr7.1:16457036-16457055 | MS.gene42564:CDS | 30.0% | |
| AAGTAAAGTGATCACAATCA+AGG | - | chr7.1:16455833-16455852 | None:intergenic | 30.0% | |
| AAGTATCAAGGAAGAAATAG+TGG | + | chr7.1:16457117-16457136 | MS.gene42564:CDS | 30.0% | |
| AATAAACATCTCCTTGAACA+TGG | - | chr7.1:16456181-16456200 | None:intergenic | 30.0% | |
| AATGAGTATCAGATGAATAG+AGG | + | chr7.1:16457231-16457250 | MS.gene42564:CDS | 30.0% | |
| ACAATGCAAAAAACAGGTAT+TGG | + | chr7.1:16456650-16456669 | MS.gene42564:CDS | 30.0% | |
| AGAAAGAAAACAACATGTCT+TGG | + | chr7.1:16457178-16457197 | MS.gene42564:CDS | 30.0% | |
| AGTATCAAGGAAGAAATAGT+GGG | + | chr7.1:16457118-16457137 | MS.gene42564:CDS | 30.0% | |
| ATAATTGGAGAAGAAACCAA+AGG | + | chr7.1:16455535-16455554 | MS.gene42564:CDS | 30.0% | |
| ATGTTCAAGGAGATGTTTAT+TGG | + | chr7.1:16456180-16456199 | MS.gene42564:intron | 30.0% | |
| CAATGCAAAAAACAGGTATT+GGG | + | chr7.1:16456651-16456670 | MS.gene42564:CDS | 30.0% | |
| CATGTGATTATAACATAACG+TGG | - | chr7.1:16456397-16456416 | None:intergenic | 30.0% | |
| GACTTGTATAACAAGTATCA+AGG | + | chr7.1:16457105-16457124 | MS.gene42564:CDS | 30.0% | |
| GTTGCATAGTTGAAAAAAGT+GGG | + | chr7.1:16455712-16455731 | MS.gene42564:intron | 30.0% | |
| TAGTTATCTATCAACCCTTA+TGG | - | chr7.1:16455904-16455923 | None:intergenic | 30.0% | |
| TATTACAGAACATAATCAGC+AGG | - | chr7.1:16455949-16455968 | None:intergenic | 30.0% | |
| TCTATGTAAATGTTAGGATC+AGG | - | chr7.1:16456712-16456731 | None:intergenic | 30.0% | |
| TGTTGCATAGTTGAAAAAAG+TGG | + | chr7.1:16455711-16455730 | MS.gene42564:intron | 30.0% | |
| TTCATTGAATAGCCAAATCT+AGG | - | chr7.1:16456330-16456349 | None:intergenic | 30.0% | |
| ! | AAAATTGGGGTTTTTCCATA+AGG | + | chr7.1:16455886-16455905 | MS.gene42564:intron | 30.0% |
| ! | AAATTGGGGTTTTTCCATAA+GGG | + | chr7.1:16455887-16455906 | MS.gene42564:intron | 30.0% |
| ! | TCTCCTTTTTCTTCTATGTT+GGG | - | chr7.1:16456805-16456824 | None:intergenic | 30.0% |
| ! | TTCATTCTTCAGTTTTTGCA+TGG | + | chr7.1:16455633-16455652 | MS.gene42564:intron | 30.0% |
| ! | TTCTGAACTTTATTTGGATG+TGG | + | chr7.1:16456759-16456778 | MS.gene42564:CDS | 30.0% |
| !! | ACTTTTGAATTGGTTCAGTT+GGG | + | chr7.1:16455849-16455868 | MS.gene42564:intron | 30.0% |
| !! | TACTTTTGAATTGGTTCAGT+TGG | + | chr7.1:16455848-16455867 | MS.gene42564:intron | 30.0% |
| !!! | TCTTTTGGTTCACAGATAAT+AGG | + | chr7.1:16456482-16456501 | MS.gene42564:intron | 30.0% |
| AAATGGTCAGAATGATTCTC+AGG | + | chr7.1:16457053-16457072 | MS.gene42564:CDS | 35.0% | |
| AACTATGTTTCAGTTTGCGT+TGG | + | chr7.1:16455919-16455938 | MS.gene42564:intron | 35.0% | |
| AAGAACCATGGATATCATCA+TGG | + | chr7.1:16457204-16457223 | MS.gene42564:CDS | 35.0% | |
| AAGTGGGTGAATGTTAGAAT+TGG | + | chr7.1:16455728-16455747 | MS.gene42564:intron | 35.0% | |
| AATAGAGGAGGAAGAAGAAA+TGG | + | chr7.1:16457246-16457265 | MS.gene42564:CDS | 35.0% | |
| AATGGTCAGAATGATTCTCA+GGG | + | chr7.1:16457054-16457073 | MS.gene42564:CDS | 35.0% | |
| AGAATGTAGTTGAAGTAAGC+AGG | - | chr7.1:16456286-16456305 | None:intergenic | 35.0% | |
| ATCAGTAACCATCATCAAGT+GGG | + | chr7.1:16455558-16455577 | MS.gene42564:CDS | 35.0% | |
| ATGCTGCAAAAGAATATGGA+TGG | + | chr7.1:16457028-16457047 | MS.gene42564:CDS | 35.0% | |
| CAACATAGAAGAAAAAGGAG+AGG | + | chr7.1:16456804-16456823 | MS.gene42564:CDS | 35.0% | |
| CATTCGACAATGCAAAAAAC+AGG | + | chr7.1:16456644-16456663 | MS.gene42564:CDS | 35.0% | |
| GAAAGCTAATAGAAGACAAG+AGG | + | chr7.1:16456566-16456585 | MS.gene42564:CDS | 35.0% | |
| GAACATGCTGCAAAAGAATA+TGG | + | chr7.1:16457024-16457043 | MS.gene42564:CDS | 35.0% | |
| TAAATGTTAGGATCAGGCAA+TGG | - | chr7.1:16456706-16456725 | None:intergenic | 35.0% | |
| TGAAGAATGAACGAACCTAA+AGG | - | chr7.1:16455624-16455643 | None:intergenic | 35.0% | |
| TGATTATAACATAACGTGGC+TGG | - | chr7.1:16456393-16456412 | None:intergenic | 35.0% | |
| ! | AAATAGTGGGAGAGGAAATT+GGG | + | chr7.1:16457131-16457150 | MS.gene42564:CDS | 35.0% |
| ! | CTCCTTTTTCTTCTATGTTG+GGG | - | chr7.1:16456804-16456823 | None:intergenic | 35.0% |
| ! | CTCTCCTTTTTCTTCTATGT+TGG | - | chr7.1:16456806-16456825 | None:intergenic | 35.0% |
| ! | GAGGGGAAAATTTGCTTATA+AGG | + | chr7.1:16457293-16457312 | MS.gene42564:CDS | 35.0% |
| ! | TAAAGGTGGTTTTCCGTTAT+AGG | - | chr7.1:16455607-16455626 | None:intergenic | 35.0% |
| ! | TATAACGGAAAACCACCTTT+AGG | + | chr7.1:16455606-16455625 | MS.gene42564:CDS | 35.0% |
| ! | TTCTTTTGCAGCATGTTCAA+CGG | - | chr7.1:16457022-16457041 | None:intergenic | 35.0% |
| ! | TTTTCCGTTATAGGATGAGA+AGG | - | chr7.1:16455598-16455617 | None:intergenic | 35.0% |
| !! | CTTTTGAATTGGTTCAGTTG+GGG | + | chr7.1:16455850-16455869 | MS.gene42564:intron | 35.0% |
| AAACTGAAGCTGCCTAGATT+TGG | + | chr7.1:16456315-16456334 | MS.gene42564:intron | 40.0% | |
| AGAATGAACGAACCTAAAGG+TGG | - | chr7.1:16455621-16455640 | None:intergenic | 40.0% | |
| ATGTCTTGGTCTAAGAACCA+TGG | + | chr7.1:16457192-16457211 | MS.gene42564:CDS | 40.0% | |
| CATAGAAGAAAAAGGAGAGG+CGG | + | chr7.1:16456807-16456826 | MS.gene42564:CDS | 40.0% | |
| CATGTATATGCATCCCAAAG+TGG | + | chr7.1:16456591-16456610 | MS.gene42564:CDS | 40.0% | |
| CGACAAACATCATCATCATC+AGG | - | chr7.1:16456222-16456241 | None:intergenic | 40.0% | |
| GAACCAAATTATGCTGCTCT+GGG | + | chr7.1:16456937-16456956 | MS.gene42564:CDS | 40.0% | |
| GAATAATTGCTGTCACATGC+AGG | + | chr7.1:16455771-16455790 | MS.gene42564:intron | 40.0% | |
| GAGTATCAGATGAATAGAGG+AGG | + | chr7.1:16457234-16457253 | MS.gene42564:CDS | 40.0% | |
| GATCAGTAACCATCATCAAG+TGG | + | chr7.1:16455557-16455576 | MS.gene42564:CDS | 40.0% | |
| TAGTGCCATGATGATATCCA+TGG | - | chr7.1:16457212-16457231 | None:intergenic | 40.0% | |
| TCCTCCTTCTCATCCTATAA+CGG | + | chr7.1:16455591-16455610 | MS.gene42564:CDS | 40.0% | |
| TGAACCAAATTATGCTGCTC+TGG | + | chr7.1:16456936-16456955 | MS.gene42564:CDS | 40.0% | |
| TGAGATCAACAACATTCCCT+GGG | + | chr7.1:16456675-16456694 | MS.gene42564:CDS | 40.0% | |
| ! | AATAGTGGGAGAGGAAATTG+GGG | + | chr7.1:16457132-16457151 | MS.gene42564:CDS | 40.0% |
| ! | CTTTTTCTTCTATGTTGGGG+CGG | - | chr7.1:16456801-16456820 | None:intergenic | 40.0% |
| ! | GAAATAGTGGGAGAGGAAAT+TGG | + | chr7.1:16457130-16457149 | MS.gene42564:CDS | 40.0% |
| ! | GATGATGGTTACTGATCCTT+TGG | - | chr7.1:16455554-16455573 | None:intergenic | 40.0% |
| ! | GCAGCATAATTTGGTTCAGA+AGG | - | chr7.1:16456934-16456953 | None:intergenic | 40.0% |
| ! | TCTTTTGCAGCATGTTCAAC+GGG | - | chr7.1:16457021-16457040 | None:intergenic | 40.0% |
| ! | TGTCGTGCTTTGAATTCATG+CGG | + | chr7.1:16455980-16455999 | MS.gene42564:intron | 40.0% |
| ! | TTTTTCTTCTATGTTGGGGC+GGG | - | chr7.1:16456800-16456819 | None:intergenic | 40.0% |
| !! | AAATTATGCTGCTCTGGGAT+GGG | + | chr7.1:16456942-16456961 | MS.gene42564:CDS | 40.0% |
| !! | CAAAACTGCTTTTCCCACAA+AGG | - | chr7.1:16456520-16456539 | None:intergenic | 40.0% |
| !! | CTTGATTTTGGCCATGTTCA+AGG | + | chr7.1:16456167-16456186 | MS.gene42564:intron | 40.0% |
| !! | GGAAAAGCAGTTTTGTGCTT+CGG | + | chr7.1:16456525-16456544 | MS.gene42564:CDS | 40.0% |
| !! | TCTTCTATTAGCTTTCGCCA+TGG | - | chr7.1:16456562-16456581 | None:intergenic | 40.0% |
| !!! | TTGGTTCAGTTGGGGTTTTT+TGG | + | chr7.1:16455858-16455877 | MS.gene42564:intron | 40.0% |
| AATCAGTCCTCTTCTGGTCT+TGG | + | chr7.1:16456859-16456878 | MS.gene42564:CDS | 45.0% | |
| AGAAGAAATGGAGGAAGAGG+AGG | + | chr7.1:16457258-16457277 | MS.gene42564:CDS | 45.0% | |
| AGAGGAGGAAGAAGAAATGG+AGG | + | chr7.1:16457249-16457268 | MS.gene42564:CDS | 45.0% | |
| ATTCTCAGGGATGGAATCAG+AGG | + | chr7.1:16457067-16457086 | MS.gene42564:CDS | 45.0% | |
| CATCCCAGAGCAGCATAATT+TGG | - | chr7.1:16456943-16456962 | None:intergenic | 45.0% | |
| CGCCCCAACATAGAAGAAAA+AGG | + | chr7.1:16456799-16456818 | MS.gene42564:CDS | 45.0% | |
| CTCTTGAATCAGTCCTCTTC+TGG | + | chr7.1:16456853-16456872 | MS.gene42564:CDS | 45.0% | |
| CTGAGATCAACAACATTCCC+TGG | + | chr7.1:16456674-16456693 | MS.gene42564:CDS | 45.0% | |
| GAGAGGAAATTGGGGAACAT+GGG | + | chr7.1:16457140-16457159 | MS.gene42564:CDS | 45.0% | |
| GCATCCCAAAGTGGTAAACT+GGG | + | chr7.1:16456600-16456619 | MS.gene42564:CDS | 45.0% | |
| GGAAGAAGAAATGGAGGAAG+AGG | + | chr7.1:16457255-16457274 | MS.gene42564:CDS | 45.0% | |
| GGATGTGGAAATAGAAGCAG+AGG | + | chr7.1:16456774-16456793 | MS.gene42564:CDS | 45.0% | |
| GTCAGAATGATTCTCAGGGA+TGG | + | chr7.1:16457058-16457077 | MS.gene42564:CDS | 45.0% | |
| GTTTCCAACAGTGCCTTTGT+GGG | + | chr7.1:16456504-16456523 | MS.gene42564:CDS | 45.0% | |
| TCCGTTATAGGATGAGAAGG+AGG | - | chr7.1:16455595-16455614 | None:intergenic | 45.0% | |
| TCGTCCCAGTTTACCACTTT+GGG | - | chr7.1:16456607-16456626 | None:intergenic | 45.0% | |
| TGCATCCCAAAGTGGTAAAC+TGG | + | chr7.1:16456599-16456618 | MS.gene42564:CDS | 45.0% | |
| TTCTCAGGGATGGAATCAGA+GGG | + | chr7.1:16457068-16457087 | MS.gene42564:CDS | 45.0% | |
| ! | CAAGGAAGAAATAGTGGGAG+AGG | + | chr7.1:16457123-16457142 | MS.gene42564:CDS | 45.0% |
| ! | CAGAAGAGGACTGATTCAAG+AGG | - | chr7.1:16456855-16456874 | None:intergenic | 45.0% |
| ! | TGCTTTGAATTCATGCGGTG+CGG | + | chr7.1:16455985-16456004 | MS.gene42564:intron | 45.0% |
| !! | AAAGCAGTTTTGTGCTTCGG+TGG | + | chr7.1:16456528-16456547 | MS.gene42564:CDS | 45.0% |
| !! | AAGCAGTTTTGTGCTTCGGT+GGG | + | chr7.1:16456529-16456548 | MS.gene42564:CDS | 45.0% |
| !! | CAAATTATGCTGCTCTGGGA+TGG | + | chr7.1:16456941-16456960 | MS.gene42564:CDS | 45.0% |
| !! | TCCTCTTCTGGTCTTGGATT+GGG | + | chr7.1:16456865-16456884 | MS.gene42564:CDS | 45.0% |
| !!! | TTTTCCCACAAAGGCACTGT+TGG | - | chr7.1:16456511-16456530 | None:intergenic | 45.0% |
| AATCAGAGGGAGCGATATGG+TGG | + | chr7.1:16457081-16457100 | MS.gene42564:CDS | 50.0% | |
| ACCATCATCAAGTGGGTCAG+TGG | + | chr7.1:16455565-16455584 | MS.gene42564:CDS | 50.0% | |
| AGAAATGGAGGAAGAGGAGG+AGG | + | chr7.1:16457261-16457280 | MS.gene42564:CDS | 50.0% | |
| AGGTTGCTACTCCTAGTGCA+TGG | + | chr7.1:16457313-16457332 | MS.gene42564:CDS | 50.0% | |
| ATCAGGCAATGGTATGTCCC+AGG | - | chr7.1:16456695-16456714 | None:intergenic | 50.0% | |
| CATCATCAAGTGGGTCAGTG+GGG | + | chr7.1:16455567-16455586 | MS.gene42564:CDS | 50.0% | |
| CCATCATCAAGTGGGTCAGT+GGG | + | chr7.1:16455566-16455585 | MS.gene42564:CDS | 50.0% | |
| GGAAATTGGGGAACATGGGA+TGG | + | chr7.1:16457144-16457163 | MS.gene42564:CDS | 50.0% | |
| GGAGAGGAAATTGGGGAACA+TGG | + | chr7.1:16457139-16457158 | MS.gene42564:CDS | 50.0% | |
| GGTTTCCAACAGTGCCTTTG+TGG | + | chr7.1:16456503-16456522 | MS.gene42564:CDS | 50.0% | |
| GTCGTCCCAGTTTACCACTT+TGG | - | chr7.1:16456608-16456627 | None:intergenic | 50.0% | |
| TCAGGCAATGGTATGTCCCA+GGG | - | chr7.1:16456694-16456713 | None:intergenic | 50.0% | |
| TCCCAATCCAAGACCAGAAG+AGG | - | chr7.1:16456869-16456888 | None:intergenic | 50.0% | |
| TGGAATCAGAGGGAGCGATA+TGG | + | chr7.1:16457078-16457097 | MS.gene42564:CDS | 50.0% | |
| ! | TGCTGTCACATGCAGGTTGA+CGG | + | chr7.1:16455778-16455797 | MS.gene42564:intron | 50.0% |
| ! | TGGATTGGGACCTACTGGAT+GGG | + | chr7.1:16456879-16456898 | MS.gene42564:CDS | 50.0% |
| ! | TTGGATTGGGACCTACTGGA+TGG | + | chr7.1:16456878-16456897 | MS.gene42564:CDS | 50.0% |
| !! | GTCCTCTTCTGGTCTTGGAT+TGG | + | chr7.1:16456864-16456883 | MS.gene42564:CDS | 50.0% |
| AATGGAGGAAGAGGAGGAGG+TGG | + | chr7.1:16457264-16457283 | MS.gene42564:CDS | 55.0% | |
| ATGGAGGAAGAGGAGGAGGT+GGG | + | chr7.1:16457265-16457284 | MS.gene42564:CDS | 55.0% | |
| ATTGGGACCTACTGGATGGG+GGG | + | chr7.1:16456882-16456901 | MS.gene42564:CDS | 55.0% | |
| CCCACTGACCCACTTGATGA+TGG | - | chr7.1:16455569-16455588 | None:intergenic | 55.0% | |
| GATTGGGACCTACTGGATGG+GGG | + | chr7.1:16456881-16456900 | MS.gene42564:CDS | 55.0% | |
| GGACGACTCTGCTGTCAAAG+AGG | + | chr7.1:16456621-16456640 | MS.gene42564:CDS | 55.0% | |
| GGATTGGGACCTACTGGATG+GGG | + | chr7.1:16456880-16456899 | MS.gene42564:CDS | 55.0% | |
| ! | GGTCTTGGATTGGGACCTAC+TGG | + | chr7.1:16456874-16456893 | MS.gene42564:CDS | 55.0% |
| GACGGAGCACAGTTGTGCTG+TGG | + | chr7.1:16455796-16455815 | MS.gene42564:intron | 60.0% | |
| TCTTCGTCCCCCCATCCAGT+AGG | - | chr7.1:16456892-16456911 | None:intergenic | 60.0% | |
| TGGAGGAAGAGGAGGAGGTG+GGG | + | chr7.1:16457266-16457285 | MS.gene42564:CDS | 60.0% | |
| ! | CTTCGGTGGGCTCAGTTCCA+TGG | + | chr7.1:16456542-16456561 | MS.gene42564:CDS | 60.0% |
| AGGAGGAGGTGGGGGAAGGA+GGG | + | chr7.1:16457275-16457294 | MS.gene42564:CDS | 65.0% | |
| GAAGAGGAGGAGGTGGGGGA+AGG | + | chr7.1:16457271-16457290 | MS.gene42564:CDS | 65.0% | |
| GGAGAGGCGGCTGTGACTCT+AGG | + | chr7.1:16456820-16456839 | MS.gene42564:CDS | 65.0% | |
| GGAGGAAGAGGAGGAGGTGG+GGG | + | chr7.1:16457267-16457286 | MS.gene42564:CDS | 65.0% | |
| GAGGAGGAGGTGGGGGAAGG+AGG | + | chr7.1:16457274-16457293 | MS.gene42564:CDS | 70.0% | |
| GGAGGAGGTGGGGGAAGGAG+GGG | + | chr7.1:16457276-16457295 | MS.gene42564:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 16455531 | 16457338 | 16455531 | ID=MS.gene42564 |
| chr7.1 | mRNA | 16455531 | 16457338 | 16455531 | ID=MS.gene42564.t1;Parent=MS.gene42564 |
| chr7.1 | exon | 16455531 | 16455627 | 16455531 | ID=MS.gene42564.t1.exon1;Parent=MS.gene42564.t1 |
| chr7.1 | CDS | 16455531 | 16455627 | 16455531 | ID=cds.MS.gene42564.t1;Parent=MS.gene42564.t1 |
| chr7.1 | exon | 16456497 | 16457338 | 16456497 | ID=MS.gene42564.t1.exon2;Parent=MS.gene42564.t1 |
| chr7.1 | CDS | 16456497 | 16457338 | 16456497 | ID=cds.MS.gene42564.t1;Parent=MS.gene42564.t1 |
| Gene Sequence |
| Protein sequence |
