Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43234.t1 | XP_003608997.2 | 95.1 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 2.10E-148 | 535 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43234.t1 | Q6L4S3 | 89.1 | 284 | 31 | 0 | 1 | 284 | 1 | 284 | 1.5e-142 | 506.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43234.t1 | G7JPW8 | 95.1 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 1.5e-148 | 535.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43234 | MS.gene029948 | PPI |
| MS.gene43234 | MS.gene030984 | PPI |
| MS.gene43234 | MS.gene028857 | PPI |
| MS.gene043467 | MS.gene43234 | PPI |
| MS.gene43234 | MS.gene055768 | PPI |
| MS.gene68929 | MS.gene43234 | PPI |
| MS.gene31416 | MS.gene43234 | PPI |
| MS.gene43234 | MS.gene59292 | PPI |
| MS.gene20481 | MS.gene43234 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43234.t1 | MTR_4g107810 | 95.105 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 0.0 | 549 |
| MS.gene43234.t1 | MTR_4g107760 | 95.105 | 286 | 14 | 0 | 1 | 286 | 1 | 286 | 0.0 | 549 |
| MS.gene43234.t1 | MTR_4g107810 | 95.105 | 286 | 14 | 0 | 1 | 286 | 61 | 346 | 0.0 | 548 |
| MS.gene43234.t1 | MTR_4g107830 | 88.889 | 297 | 18 | 1 | 1 | 282 | 1 | 297 | 0.0 | 541 |
| MS.gene43234.t1 | MTR_4g107720 | 94.326 | 282 | 16 | 0 | 1 | 282 | 1 | 282 | 0.0 | 536 |
| MS.gene43234.t1 | MTR_6g011380 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 6.82e-178 | 492 |
| MS.gene43234.t1 | MTR_4g107730 | 86.806 | 288 | 30 | 3 | 1 | 286 | 1 | 282 | 4.20e-177 | 489 |
| MS.gene43234.t1 | MTR_8g469160 | 78.092 | 283 | 62 | 0 | 1 | 283 | 1 | 283 | 1.99e-174 | 483 |
| MS.gene43234.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 7.50e-117 | 337 |
| MS.gene43234.t1 | MTR_4g107700 | 97.531 | 81 | 2 | 0 | 202 | 282 | 6 | 86 | 4.32e-50 | 160 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43234.t1 | AT5G62740 | 88.298 | 282 | 33 | 0 | 1 | 282 | 1 | 282 | 0.0 | 523 |
| MS.gene43234.t1 | AT3G01290 | 79.787 | 282 | 57 | 0 | 1 | 282 | 1 | 282 | 1.63e-170 | 473 |
| MS.gene43234.t1 | AT1G69840 | 80.070 | 286 | 57 | 0 | 1 | 286 | 1 | 286 | 1.75e-169 | 471 |
| MS.gene43234.t1 | AT1G69840 | 80.070 | 286 | 57 | 0 | 1 | 286 | 1 | 286 | 1.75e-169 | 471 |
| MS.gene43234.t1 | AT1G69840 | 80.070 | 286 | 57 | 0 | 1 | 286 | 1 | 286 | 1.75e-169 | 471 |
| MS.gene43234.t1 | AT1G69840 | 80.070 | 286 | 57 | 0 | 1 | 286 | 1 | 286 | 1.75e-169 | 471 |
| MS.gene43234.t1 | AT1G69840 | 80.070 | 286 | 57 | 0 | 1 | 286 | 1 | 286 | 1.75e-169 | 471 |
| MS.gene43234.t1 | AT1G69840 | 80.070 | 286 | 57 | 0 | 1 | 286 | 1 | 286 | 1.75e-169 | 471 |
| MS.gene43234.t1 | AT1G69840 | 80.070 | 286 | 57 | 0 | 1 | 286 | 1 | 286 | 1.75e-169 | 471 |
| MS.gene43234.t1 | AT5G51570 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 1.72e-120 | 347 |
Find 62 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.235356 | 8.4:-19712879 | MS.gene43234:CDS |
| GCATCATCCAAGTTGAGTTT+TGG | 0.266671 | 8.4:+19713865 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.4:+19712790 | None:intergenic |
| CATTGCATGCCATGGTTTCT+TGG | 0.290257 | 8.4:-19714483 | MS.gene43234:CDS |
| TATTCTCATTGCAGTGATTA+GGG | 0.314464 | 8.4:-19713896 | MS.gene43234:intron |
| ATATTCTCATTGCAGTGATT+AGG | 0.328396 | 8.4:-19713897 | MS.gene43234:intron |
| CACTCTTCGGCTACAACAAT+TGG | 0.343058 | 8.4:-19714439 | MS.gene43234:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.4:-19713722 | MS.gene43234:intron |
| TGCAAAAGATGTCATGGATA+TGG | 0.379506 | 8.4:-19712919 | MS.gene43234:CDS |
| TTTCTTGGAAAACGAATTGC+TGG | 0.394254 | 8.4:-19714468 | MS.gene43234:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.398028 | 8.4:-19714537 | MS.gene43234:CDS |
| GTCTAAATATCTCTCTGGGC+TGG | 0.425139 | 8.4:-19713024 | MS.gene43234:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.4:-19712969 | MS.gene43234:CDS |
| TGTGATCAGCTGCAAGGTTG+AGG | 0.435767 | 8.4:-19713115 | MS.gene43234:intron |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.4:-19712787 | MS.gene43234:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.451469 | 8.4:-19713029 | MS.gene43234:CDS |
| GCCGTCTTAACATGCTGATC+TGG | 0.458839 | 8.4:+19713662 | None:intergenic |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.4:-19714511 | MS.gene43234:CDS |
| TTGCTGGTCATCTCACTCTT+CGG | 0.485262 | 8.4:-19714452 | MS.gene43234:CDS |
| TCTAAATATCTCTCTGGGCT+GGG | 0.486024 | 8.4:-19713023 | MS.gene43234:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.4:-19714084 | MS.gene43234:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.503619 | 8.4:-19714491 | MS.gene43234:CDS |
| GTGATCAGCTGCAAGGTTGA+GGG | 0.509486 | 8.4:-19713114 | MS.gene43234:intron |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.4:-19714510 | MS.gene43234:CDS |
| CTGTCTTGTGATCAGCTGCA+AGG | 0.519742 | 8.4:-19713121 | MS.gene43234:intron |
| CAGCGTCAAGCCATTGTGGA+TGG | 0.520226 | 8.4:-19712990 | MS.gene43234:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.4:+19714492 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.4:+19712848 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.4:-19712834 | MS.gene43234:CDS |
| TAACAAACCAACCTTTGTCT+TGG | 0.535367 | 8.4:+19714401 | None:intergenic |
| AATTAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.4:-19713051 | MS.gene43234:CDS |
| GCTATGAATGAAATCAATGC+TGG | 0.556275 | 8.4:-19713641 | MS.gene43234:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.4:+19712816 | None:intergenic |
| GACAACTGCAAAAGATGTCA+TGG | 0.560418 | 8.4:-19712925 | MS.gene43234:CDS |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.4:-19712840 | MS.gene43234:CDS |
| GCCAGATCAGCATGTTAAGA+CGG | 0.570358 | 8.4:-19713663 | MS.gene43234:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.573023 | 8.4:-19713028 | MS.gene43234:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.4:+19712851 | None:intergenic |
| CAAGAAACCATGGCATGCAA+TGG | 0.579517 | 8.4:+19714484 | None:intergenic |
| AAATGAAATCGCAAAAGCTG+TGG | 0.586140 | 8.4:-19713830 | MS.gene43234:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.4:-19714075 | MS.gene43234:CDS |
| CATCCACAATGGCTTGACGC+TGG | 0.591027 | 8.4:+19712991 | None:intergenic |
| TCTCAAGTGGCTATGAGAGA+AGG | 0.594736 | 8.4:-19714543 | MS.gene43234:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.4:+19713040 | None:intergenic |
| ATCATTAGCCTTGTCTGCCA+AGG | 0.596483 | 8.4:+19714067 | None:intergenic |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.4:-19713812 | MS.gene43234:intron |
| AAGTGTTCCAAAACTCAACT+TGG | 0.607104 | 8.4:-19713872 | MS.gene43234:CDS |
| TTGCAAATTAAGCGAGCCGA+GGG | 0.613528 | 8.4:-19713056 | MS.gene43234:CDS |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.4:-19714556 | MS.gene43234:CDS |
| ACTCATGAGTTAGAGAACCC+TGG | 0.620152 | 8.4:+19712769 | None:intergenic |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.4:-19712798 | MS.gene43234:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.4:+19714072 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.624349 | 8.4:-19714040 | MS.gene43234:CDS |
| GAGGGTGGCAGCGAATGAGA+AGG | 0.631840 | 8.4:-19713096 | MS.gene43234:CDS |
| CTTGCAAATTAAGCGAGCCG+AGG | 0.632438 | 8.4:-19713057 | MS.gene43234:CDS |
| TCGCCAGCGTCAAGCCATTG+TGG | 0.633446 | 8.4:-19712994 | MS.gene43234:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.4:-19712786 | MS.gene43234:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.4:-19714412 | MS.gene43234:intron |
| ATCAGCTGCAAGGTTGAGGG+TGG | 0.663405 | 8.4:-19713111 | MS.gene43234:intron |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8.4:+19712980 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.4:+19712825 | None:intergenic |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.4:+19712895 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAAATAGTATTTACTAATT+AGG | - | chr8.4:19713568-19713587 | MS.gene43234:intron | 15.0% |
| !! | GAAATAAGTATAAGAAAATA+TGG | + | chr8.4:19714206-19714225 | None:intergenic | 15.0% |
| !!! | AATGAAAGTATTTATGTTAT+TGG | + | chr8.4:19713019-19713038 | None:intergenic | 15.0% |
| !!! | TTTAGCTAGAATATTTTTTT+AGG | - | chr8.4:19713038-19713057 | MS.gene43234:CDS | 15.0% |
| !! | AATATGCAAATTATCTACTA+AGG | - | chr8.4:19713418-19713437 | MS.gene43234:intron | 20.0% |
| !! | CATAAGAATCAAAATAACAT+AGG | + | chr8.4:19713070-19713089 | None:intergenic | 20.0% |
| !! | TTATACTTCATACATTATCT+AGG | + | chr8.4:19714104-19714123 | None:intergenic | 20.0% |
| !! | TTCTTATGTTTGCTTAAATA+TGG | - | chr8.4:19713082-19713101 | MS.gene43234:CDS | 20.0% |
| !! | TTTAATATTTATTTGCTTGC+AGG | - | chr8.4:19713214-19713233 | MS.gene43234:intron | 20.0% |
| !! | TTTCATTGCACAAATTATTT+AGG | - | chr8.4:19713972-19713991 | MS.gene43234:intron | 20.0% |
| ! | ACCAGACAACATTAATTTAA+TGG | + | chr8.4:19713194-19713213 | None:intergenic | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | + | chr8.4:19713010-19713029 | None:intergenic | 25.0% |
| ! | TCATATAGAAACAATGTTGT+GGG | + | chr8.4:19713758-19713777 | None:intergenic | 25.0% |
| ! | TCCATTAAATTAATGTTGTC+TGG | - | chr8.4:19713190-19713209 | MS.gene43234:intron | 25.0% |
| ! | TGTGCAATGAAAATAGATTT+AGG | + | chr8.4:19713964-19713983 | None:intergenic | 25.0% |
| ! | TTCATATAGAAACAATGTTG+TGG | + | chr8.4:19713759-19713778 | None:intergenic | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.4:19714467-19714486 | MS.gene43234:CDS | 25.0% |
| !! | TAATTTTGAATCATCTCAAC+AGG | - | chr8.4:19713608-19713627 | MS.gene43234:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.4:19712823-19712842 | MS.gene43234:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.4:19713335-19713354 | MS.gene43234:intron | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | + | chr8.4:19713133-19713152 | None:intergenic | 25.0% |
| AAGAAAATATGGACGAACAA+AGG | + | chr8.4:19714195-19714214 | None:intergenic | 30.0% | |
| AATTATTTAGGCATTCCCTT+TGG | - | chr8.4:19713984-19714003 | MS.gene43234:intron | 30.0% | |
| ACATGTATGGAAAACTATTG+AGG | - | chr8.4:19713898-19713917 | MS.gene43234:intron | 30.0% | |
| AGAAAATATGGACGAACAAA+GGG | + | chr8.4:19714194-19714213 | None:intergenic | 30.0% | |
| ATATTCTCATTGCAGTGATT+AGG | - | chr8.4:19713449-19713468 | MS.gene43234:intron | 30.0% | |
| CATATAGAAACAATGTTGTG+GGG | + | chr8.4:19713757-19713776 | None:intergenic | 30.0% | |
| TATTCTCATTGCAGTGATTA+GGG | - | chr8.4:19713450-19713469 | MS.gene43234:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.4:19713306-19713325 | MS.gene43234:intron | 30.0% | |
| ! | TTTTATCTTATTCCCCAAAG+AGG | - | chr8.4:19713814-19713833 | MS.gene43234:CDS | 30.0% |
| !! | GATTTTCAGTTAAAGTACCA+GGG | - | chr8.4:19714399-19714418 | MS.gene43234:intron | 30.0% |
| AAACACTTCTTGACCTCTTT+GGG | + | chr8.4:19713830-19713849 | None:intergenic | 35.0% | |
| AAAGAAGCAGAACAAACCAA+AGG | + | chr8.4:19714003-19714022 | None:intergenic | 35.0% | |
| AAATGAAATCGCAAAAGCTG+TGG | - | chr8.4:19713516-19713535 | MS.gene43234:intron | 35.0% | |
| AAGAAGCAGAACAAACCAAA+GGG | + | chr8.4:19714002-19714021 | None:intergenic | 35.0% | |
| AAGTGTTCCAAAACTCAACT+TGG | - | chr8.4:19713474-19713493 | MS.gene43234:intron | 35.0% | |
| ATCATAGCATGACTGTCTAT+TGG | + | chr8.4:19714031-19714050 | None:intergenic | 35.0% | |
| ATCTCTTTCACTATTGTGTC+AGG | - | chr8.4:19713107-19713126 | MS.gene43234:CDS | 35.0% | |
| CATGGAATGACATGAAGATT+TGG | + | chr8.4:19712992-19713011 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.4:19714318-19714337 | MS.gene43234:intron | 35.0% | |
| GAAAATATGGACGAACAAAG+GGG | + | chr8.4:19714193-19714212 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.4:19713705-19713724 | MS.gene43234:CDS | 35.0% | |
| GTACATAAACATGCAACAAG+TGG | - | chr8.4:19713389-19713408 | MS.gene43234:intron | 35.0% | |
| TAAACACTTCTTGACCTCTT+TGG | + | chr8.4:19713831-19713850 | None:intergenic | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.4:19712948-19712967 | None:intergenic | 35.0% | |
| TACATAGATCACACAACACA+AGG | + | chr8.4:19714078-19714097 | None:intergenic | 35.0% | |
| TAGACAGTCATGCTATGATA+TGG | - | chr8.4:19714032-19714051 | MS.gene43234:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.4:19714427-19714446 | MS.gene43234:CDS | 35.0% | |
| TTCCATACATGTATGACGAA+GGG | + | chr8.4:19713890-19713909 | None:intergenic | 35.0% | |
| TTTCCATACATGTATGACGA+AGG | + | chr8.4:19713891-19713910 | None:intergenic | 35.0% | |
| TTTCTTGGAAAACGAATTGC+TGG | - | chr8.4:19712878-19712897 | MS.gene43234:CDS | 35.0% | |
| ! | ATTCGTTTTCCAAGAAACCA+TGG | + | chr8.4:19712875-19712894 | None:intergenic | 35.0% |
| !! | GGATTTTCAGTTAAAGTACC+AGG | - | chr8.4:19714398-19714417 | MS.gene43234:intron | 35.0% |
| !! | TGGTTTGTTCTGCTTCTTTA+GGG | - | chr8.4:19714004-19714023 | MS.gene43234:intron | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.4:19714454-19714473 | None:intergenic | 35.0% |
| !! | TTGGTTTGTTCTGCTTCTTT+AGG | - | chr8.4:19714003-19714022 | MS.gene43234:intron | 35.0% |
| AACACTTCTTGACCTCTTTG+GGG | + | chr8.4:19713829-19713848 | None:intergenic | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.4:19714501-19714520 | None:intergenic | 40.0% | |
| ATACATGTATGACGAAGGGT+AGG | + | chr8.4:19713886-19713905 | None:intergenic | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.4:19712934-19712953 | MS.gene43234:CDS | 40.0% | |
| GACAACTGCAAAAGATGTCA+TGG | - | chr8.4:19714421-19714440 | MS.gene43234:CDS | 40.0% | |
| GATATTTGGCATGTAGCACT+CGG | + | chr8.4:19714171-19714190 | None:intergenic | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.4:19714317-19714336 | MS.gene43234:intron | 40.0% | |
| TACCCTTCGTCATACATGTA+TGG | - | chr8.4:19713885-19713904 | MS.gene43234:CDS | 40.0% | |
| TCTAAATATCTCTCTGGGCT+GGG | - | chr8.4:19714323-19714342 | MS.gene43234:intron | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.4:19713534-19713553 | MS.gene43234:intron | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.4:19713262-19713281 | MS.gene43234:intron | 40.0% | |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.4:19712835-19712854 | MS.gene43234:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.4:19712790-19712809 | MS.gene43234:CDS | 40.0% |
| !! | GCATCATCCAAGTTGAGTTT+TGG | + | chr8.4:19713484-19713503 | None:intergenic | 40.0% |
| AATGTTGTGGGGACATCTCA+CGG | + | chr8.4:19713746-19713765 | None:intergenic | 45.0% | |
| ACTCATGAGTTAGAGAACCC+TGG | + | chr8.4:19714580-19714599 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.4:19713624-19713643 | MS.gene43234:intron | 45.0% | |
| CAAGAAACCATGGCATGCAA+TGG | + | chr8.4:19712865-19712884 | None:intergenic | 45.0% | |
| CACTCTTCGGCTACAACAAT+TGG | - | chr8.4:19712907-19712926 | MS.gene43234:CDS | 45.0% | |
| CATTGCATGCCATGGTTTCT+TGG | - | chr8.4:19712863-19712882 | MS.gene43234:CDS | 45.0% | |
| GCCAGATCAGCATGTTAAGA+CGG | - | chr8.4:19713683-19713702 | MS.gene43234:CDS | 45.0% | |
| GGACGAACAAAGGGGATATT+TGG | + | chr8.4:19714185-19714204 | None:intergenic | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.4:19714559-19714578 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8.4:19714377-19714396 | MS.gene43234:intron | 45.0% | |
| GTCTAAATATCTCTCTGGGC+TGG | - | chr8.4:19714322-19714341 | MS.gene43234:intron | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | + | chr8.4:19714369-19714388 | None:intergenic | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.4:19714548-19714567 | MS.gene43234:CDS | 45.0% | |
| TAGCACTCGGTAGAGAAACA+TGG | + | chr8.4:19714158-19714177 | None:intergenic | 45.0% | |
| TCTCAAGTGGCTATGAGAGA+AGG | - | chr8.4:19712803-19712822 | MS.gene43234:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.4:19714506-19714525 | MS.gene43234:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | - | chr8.4:19712938-19712957 | MS.gene43234:CDS | 45.0% | |
| TTGCAAATTAAGCGAGCCGA+GGG | - | chr8.4:19714290-19714309 | MS.gene43234:intron | 45.0% | |
| TTGCTGGTCATCTCACTCTT+CGG | - | chr8.4:19712894-19712913 | MS.gene43234:CDS | 45.0% | |
| ! | ACATCTTTTGCAGTTGTCCC+TGG | + | chr8.4:19714419-19714438 | None:intergenic | 45.0% |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | - | chr8.4:19712809-19712828 | MS.gene43234:CDS | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.4:19714559-19714578 | MS.gene43234:CDS | 45.0% |
| !! | ATCATTAGCCTTGTCTGCCA+AGG | + | chr8.4:19713282-19713301 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.4:19714560-19714579 | MS.gene43234:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.4:19712836-19712855 | MS.gene43234:CDS | 45.0% |
| CTGTCTTGTGATCAGCTGCA+AGG | - | chr8.4:19714225-19714244 | MS.gene43234:intron | 50.0% | |
| CTTGCAAATTAAGCGAGCCG+AGG | - | chr8.4:19714289-19714308 | MS.gene43234:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.4:19714498-19714517 | None:intergenic | 50.0% | |
| GCCGTCTTAACATGCTGATC+TGG | + | chr8.4:19713687-19713706 | None:intergenic | 50.0% | |
| GTGATCAGCTGCAAGGTTGA+GGG | - | chr8.4:19714232-19714251 | MS.gene43234:intron | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.4:19714512-19714531 | MS.gene43234:CDS | 50.0% | |
| TGTGATCAGCTGCAAGGTTG+AGG | - | chr8.4:19714231-19714250 | MS.gene43234:intron | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.4:19714309-19714328 | None:intergenic | 50.0% | |
| AATTAAGCGAGCCGAGGGTG+AGG | - | chr8.4:19714295-19714314 | MS.gene43234:intron | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8.4:19713271-19713290 | MS.gene43234:intron | 55.0% | |
| ATCAGCTGCAAGGTTGAGGG+TGG | - | chr8.4:19714235-19714254 | MS.gene43234:intron | 55.0% | |
| CAGCGTCAAGCCATTGTGGA+TGG | - | chr8.4:19714356-19714375 | MS.gene43234:intron | 55.0% | |
| CATCCACAATGGCTTGACGC+TGG | + | chr8.4:19714358-19714377 | None:intergenic | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.4:19712857-19712876 | None:intergenic | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8.4:19713277-19713296 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.4:19714524-19714543 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.4:19712855-19712874 | MS.gene43234:CDS | 60.0% | |
| GAGGGTGGCAGCGAATGAGA+AGG | - | chr8.4:19714250-19714269 | MS.gene43234:intron | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.4:19714533-19714552 | None:intergenic | 60.0% | |
| TCGCCAGCGTCAAGCCATTG+TGG | - | chr8.4:19714352-19714371 | MS.gene43234:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19712767 | 19714601 | 19712767 | ID=MS.gene43234 |
| chr8.4 | mRNA | 19712767 | 19714601 | 19712767 | ID=MS.gene43234.t1;Parent=MS.gene43234 |
| chr8.4 | exon | 19714413 | 19714601 | 19714413 | ID=MS.gene43234.t1.exon1;Parent=MS.gene43234.t1 |
| chr8.4 | CDS | 19714413 | 19714601 | 19714413 | ID=cds.MS.gene43234.t1;Parent=MS.gene43234.t1 |
| chr8.4 | exon | 19714012 | 19714132 | 19714012 | ID=MS.gene43234.t1.exon2;Parent=MS.gene43234.t1 |
| chr8.4 | CDS | 19714012 | 19714132 | 19714012 | ID=cds.MS.gene43234.t1;Parent=MS.gene43234.t1 |
| chr8.4 | exon | 19713813 | 19713904 | 19713813 | ID=MS.gene43234.t1.exon3;Parent=MS.gene43234.t1 |
| chr8.4 | CDS | 19713813 | 19713904 | 19713813 | ID=cds.MS.gene43234.t1;Parent=MS.gene43234.t1 |
| chr8.4 | exon | 19713642 | 19713738 | 19713642 | ID=MS.gene43234.t1.exon4;Parent=MS.gene43234.t1 |
| chr8.4 | CDS | 19713642 | 19713738 | 19713642 | ID=cds.MS.gene43234.t1;Parent=MS.gene43234.t1 |
| chr8.4 | exon | 19712767 | 19713128 | 19712767 | ID=MS.gene43234.t1.exon5;Parent=MS.gene43234.t1 |
| chr8.4 | CDS | 19712767 | 19713128 | 19712767 | ID=cds.MS.gene43234.t1;Parent=MS.gene43234.t1 |
| Gene Sequence |
| Protein sequence |
