Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43264.t1 | RHN63602.1 | 100 | 284 | 0 | 0 | 1 | 284 | 6 | 289 | 2.50E-154 | 554.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43264.t1 | Q9FM19 | 89.4 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 2.7e-141 | 502.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43264.t1 | G7JPW1 | 100.0 | 284 | 0 | 0 | 1 | 284 | 1 | 284 | 1.8e-154 | 554.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene31416 | MS.gene43264 | PPI |
| MS.gene43264 | MS.gene055768 | PPI |
| MS.gene43264 | MS.gene029948 | PPI |
| MS.gene43264 | MS.gene59292 | PPI |
| MS.gene43264 | MS.gene68929 | PPI |
| MS.gene43264 | MS.gene030984 | PPI |
| MS.gene43264 | MS.gene028857 | PPI |
| MS.gene43264 | MS.gene043467 | PPI |
| MS.gene43264 | MS.gene20481 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43264.t1 | MTR_4g107720 | 100.000 | 284 | 0 | 0 | 1 | 284 | 1 | 284 | 0.0 | 587 |
| MS.gene43264.t1 | MTR_4g107810 | 94.755 | 286 | 13 | 1 | 1 | 284 | 1 | 286 | 0.0 | 540 |
| MS.gene43264.t1 | MTR_4g107760 | 94.755 | 286 | 13 | 1 | 1 | 284 | 1 | 286 | 0.0 | 540 |
| MS.gene43264.t1 | MTR_4g107830 | 88.294 | 299 | 20 | 1 | 1 | 284 | 1 | 299 | 0.0 | 539 |
| MS.gene43264.t1 | MTR_4g107810 | 94.755 | 286 | 13 | 1 | 1 | 284 | 61 | 346 | 0.0 | 538 |
| MS.gene43264.t1 | MTR_4g107730 | 89.510 | 286 | 24 | 2 | 1 | 284 | 1 | 282 | 0.0 | 504 |
| MS.gene43264.t1 | MTR_6g011380 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.30e-178 | 493 |
| MS.gene43264.t1 | MTR_8g469160 | 80.142 | 282 | 56 | 0 | 1 | 282 | 1 | 282 | 1.39e-176 | 488 |
| MS.gene43264.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 1.05e-115 | 334 |
| MS.gene43264.t1 | MTR_4g107700 | 96.386 | 83 | 3 | 0 | 202 | 284 | 6 | 88 | 4.37e-52 | 165 |
| MS.gene43264.t1 | MTR_6g060500 | 49.231 | 65 | 20 | 1 | 161 | 212 | 1 | 65 | 6.42e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43264.t1 | AT5G62740 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 532 |
| MS.gene43264.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene43264.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene43264.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene43264.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene43264.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene43264.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene43264.t1 | AT1G69840 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 2.37e-172 | 478 |
| MS.gene43264.t1 | AT3G01290 | 78.092 | 283 | 62 | 0 | 1 | 283 | 1 | 283 | 1.04e-168 | 468 |
| MS.gene43264.t1 | AT5G51570 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 4.55e-120 | 345 |
Find 72 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTTTGAAAGAAAT+TGG | 0.117209 | 8.4:+20128177 | MS.gene43264:CDS |
| CTATTCTCATTACAGTAATT+AGG | 0.184140 | 8.4:+20127319 | MS.gene43264:intron |
| GGAGAAGTCCATCGCGAATT+TGG | 0.274844 | 8.4:-20128266 | None:intergenic |
| TATTCTCATTACAGTAATTA+GGG | 0.309554 | 8.4:+20127320 | MS.gene43264:intron |
| CCATTGCATGCCATGGTTCC+TGG | 0.324425 | 8.4:+20126720 | MS.gene43264:CDS |
| TTGACACTTTGAAAGAAATT+GGG | 0.334978 | 8.4:+20128178 | MS.gene43264:CDS |
| GCGTCATCCAAGTAGAGTTT+TGG | 0.335951 | 8.4:-20127351 | None:intergenic |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.4:+20127501 | MS.gene43264:intron |
| CTCCCTTCGGCTACAACAAT+TGG | 0.345628 | 8.4:+20126765 | MS.gene43264:CDS |
| GCCCGCTTCACATGCTCATC+TGG | 0.396619 | 8.4:-20127561 | None:intergenic |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.415422 | 8.4:+20126667 | MS.gene43264:CDS |
| GCAACATCGCGAACAGCGCC+AGG | 0.424117 | 8.4:-20128240 | None:intergenic |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.4:+20128087 | MS.gene43264:CDS |
| TTCCTGGGAAAACGAATTGC+CGG | 0.432958 | 8.4:+20126736 | MS.gene43264:CDS |
| AATTCGCGATGGACTTCTCC+AGG | 0.436039 | 8.4:+20128269 | MS.gene43264:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.437735 | 8.4:+20128137 | MS.gene43264:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8.4:+20128027 | MS.gene43264:CDS |
| GCCAGATGAGCATGTGAAGC+GGG | 0.477850 | 8.4:+20127560 | MS.gene43264:CDS |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8.4:+20127954 | MS.gene43264:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.4:+20127144 | MS.gene43264:CDS |
| CAGTGTTCCAAAACTCTACT+TGG | 0.493504 | 8.4:+20127344 | MS.gene43264:CDS |
| TTTGAAGAGGTGCTTCAGCC+AGG | 0.501147 | 8.4:+20126694 | MS.gene43264:CDS |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8.4:-20126712 | None:intergenic |
| TATCCAATTGTTGTAGCCGA+AGG | 0.512577 | 8.4:-20126768 | None:intergenic |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8.4:+20128032 | MS.gene43264:CDS |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.517543 | 8.4:+20127945 | MS.gene43264:intron |
| CTTGGCAGACAAGGCTAATG+AGG | 0.518494 | 8.4:+20127162 | MS.gene43264:CDS |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.4:-20128208 | None:intergenic |
| CATTGCATGCCATGGTTCCT+GGG | 0.523914 | 8.4:+20126721 | MS.gene43264:CDS |
| ACAGTAACAAACCTTTGTCT+TGG | 0.530913 | 8.4:-20126803 | None:intergenic |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.4:+20128066 | MS.gene43264:CDS |
| TAGCCGAAGGGAGAGATGAC+CGG | 0.541932 | 8.4:-20126755 | None:intergenic |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8.4:+20128033 | MS.gene43264:CDS |
| AATTAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.4:+20128005 | MS.gene43264:CDS |
| TGACACTTTGAAAGAAATTG+GGG | 0.551717 | 8.4:+20128179 | MS.gene43264:CDS |
| GTGTTCATTCCACATGGACC+TGG | 0.553162 | 8.4:+20128222 | MS.gene43264:CDS |
| GACAAGTGCAAAAGATGTCA+TGG | 0.553387 | 8.4:+20128131 | MS.gene43264:CDS |
| CTCATTAGCCTTGTCTGCCA+AGG | 0.555637 | 8.4:-20127161 | None:intergenic |
| TTGCCGGTCATCTCTCCCTT+CGG | 0.560766 | 8.4:+20126752 | MS.gene43264:CDS |
| CGTGCAAGTTGATCAGTCTA+CGG | 0.563181 | 8.4:+20126645 | MS.gene43264:CDS |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.4:+20128216 | MS.gene43264:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8.4:+20128028 | MS.gene43264:CDS |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8.4:+20126713 | MS.gene43264:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.4:-20128205 | None:intergenic |
| GAAGCTACTGATGAGAACCC+TGG | 0.574524 | 8.4:-20128287 | None:intergenic |
| ATCCAATTGTTGTAGCCGAA+GGG | 0.579325 | 8.4:-20126767 | None:intergenic |
| CCAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.4:-20126720 | None:intergenic |
| GTTGGCAGCTAAGGAGAAAG+CGG | 0.586849 | 8.4:+20127963 | MS.gene43264:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.4:+20127153 | MS.gene43264:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.595457 | 8.4:+20127404 | MS.gene43264:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.4:-20128016 | None:intergenic |
| TTTGATCAGCTGCAAGAATG+AGG | 0.600186 | 8.4:+20127941 | MS.gene43264:intron |
| GCTATGAATGAAATCAATGC+AGG | 0.600928 | 8.4:+20127582 | MS.gene43264:CDS |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.4:+20127386 | MS.gene43264:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.4:+20127190 | MS.gene43264:CDS |
| TTGCAAATTAAGCGAGCCGA+GGG | 0.623495 | 8.4:+20128000 | MS.gene43264:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.4:-20127156 | None:intergenic |
| TCTACGGTGGCTATGAGAGA+AGG | 0.625498 | 8.4:+20126661 | MS.gene43264:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.4:+20127188 | MS.gene43264:CDS |
| GGCAGCTAAGGAGAAAGCGG+AGG | 0.632411 | 8.4:+20127966 | MS.gene43264:CDS |
| AGCCAGATGAGCATGTGAAG+CGG | 0.633550 | 8.4:+20127559 | MS.gene43264:CDS |
| CTTGCAAATTAAGCGAGCCG+AGG | 0.639259 | 8.4:+20127999 | MS.gene43264:CDS |
| TCGCCAACGTCAAGCCATTG+TGG | 0.640251 | 8.4:+20128062 | MS.gene43264:CDS |
| GTTGCTAGCCAAATTCGCGA+TGG | 0.641354 | 8.4:+20128258 | MS.gene43264:CDS |
| CATCCACAATGGCTTGACGT+TGG | 0.649829 | 8.4:-20128065 | None:intergenic |
| ATTCGCGATGGACTTCTCCA+GGG | 0.652495 | 8.4:+20128270 | MS.gene43264:CDS |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8.4:-20128076 | None:intergenic |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8.4:+20126792 | MS.gene43264:CDS |
| CGAACAGCGCCAGGTCCATG+TGG | 0.670540 | 8.4:-20128231 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.4:+20127189 | MS.gene43264:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.697140 | 8.4:-20128161 | None:intergenic |
| GCAAGTTGATCAGTCTACGG+TGG | 0.711100 | 8.4:+20126648 | MS.gene43264:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATAAGTGGTTTAAAAATA+TGG | + | chr8.4:20127277-20127296 | MS.gene43264:intron | 15.0% |
| !! | ACAATTAGTATTTATTGATA+AGG | + | chr8.4:20127445-20127464 | MS.gene43264:intron | 15.0% |
| !! | GGAAATAAAATTAATTACAA+AGG | - | chr8.4:20127683-20127702 | None:intergenic | 15.0% |
| !!! | ATTAATTTTATTTCCAAAAG+AGG | + | chr8.4:20127688-20127707 | MS.gene43264:intron | 15.0% |
| !! | ATAGATAAACATGAAATAAG+TGG | + | chr8.4:20127264-20127283 | MS.gene43264:intron | 20.0% |
| !! | TATTCTCATTACAGTAATTA+GGG | + | chr8.4:20127320-20127339 | MS.gene43264:intron | 20.0% |
| !! | TCATATAAAAACAATGTTGT+GGG | - | chr8.4:20127638-20127657 | None:intergenic | 20.0% |
| !! | TCATTTGAATTAATGTTGAT+TGG | + | chr8.4:20127072-20127091 | MS.gene43264:intron | 20.0% |
| !! | TTCATATAAAAACAATGTTG+TGG | - | chr8.4:20127639-20127658 | None:intergenic | 20.0% |
| !! | TTTAATATTTATTTGCTTGC+AGG | + | chr8.4:20127096-20127115 | MS.gene43264:intron | 20.0% |
| !!! | ATTTTTATTAGTTGTCATTC+CGG | + | chr8.4:20126923-20126942 | MS.gene43264:intron | 20.0% |
| !!! | CATTTGAATTAATGTTGATT+GGG | + | chr8.4:20127073-20127092 | MS.gene43264:intron | 20.0% |
| ! | ATGTTTATCTATTGCTAAGA+AGG | - | chr8.4:20127256-20127275 | None:intergenic | 25.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | - | chr8.4:20127216-20127235 | None:intergenic | 25.0% |
| ! | CATATAAAAACAATGTTGTG+GGG | - | chr8.4:20127637-20127656 | None:intergenic | 25.0% |
| ! | CTATTCTCATTACAGTAATT+AGG | + | chr8.4:20127319-20127338 | MS.gene43264:intron | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | - | chr8.4:20127917-20127936 | None:intergenic | 25.0% |
| ! | TAACATGAATACTTTCATTC+TGG | + | chr8.4:20126884-20126903 | MS.gene43264:intron | 25.0% |
| ! | TAACTTTGAATAATCTCAAC+AGG | + | chr8.4:20127485-20127504 | MS.gene43264:intron | 25.0% |
| ! | TGTTTATCTATTGCTAAGAA+GGG | - | chr8.4:20127255-20127274 | None:intergenic | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | + | chr8.4:20127910-20127929 | MS.gene43264:intron | 25.0% |
| !! | GCTATATGTTTTCTTAACTA+TGG | + | chr8.4:20126964-20126983 | MS.gene43264:intron | 25.0% |
| !! | TTGACACTTTGAAAGAAATT+GGG | + | chr8.4:20128178-20128197 | MS.gene43264:CDS | 25.0% |
| !! | TTTGACACTTTGAAAGAAAT+TGG | + | chr8.4:20128177-20128196 | MS.gene43264:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | + | chr8.4:20127217-20127236 | MS.gene43264:CDS | 25.0% |
| !!! | TAGATATGAAGTATTGAAAG+TGG | - | chr8.4:20127016-20127035 | None:intergenic | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | + | chr8.4:20127386-20127405 | MS.gene43264:CDS | 30.0% | |
| AAGGGATACATGTAATATTC+AGG | + | chr8.4:20127774-20127793 | MS.gene43264:intron | 30.0% | |
| ATGGTTATCTCTTTCACTAT+TGG | + | chr8.4:20126983-20127002 | MS.gene43264:intron | 30.0% | |
| CCAAATATCTACTTTGTTCT+TGG | + | chr8.4:20127887-20127906 | MS.gene43264:intron | 30.0% | |
| CCAAGAACAAAGTAGATATT+TGG | - | chr8.4:20127890-20127909 | None:intergenic | 30.0% | |
| GAAACATCGTAAATGATACA+AGG | - | chr8.4:20127849-20127868 | None:intergenic | 30.0% | |
| TATGGAATGACATGAAGATT+TGG | - | chr8.4:20126846-20126865 | None:intergenic | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | + | chr8.4:20127189-20127208 | MS.gene43264:CDS | 30.0% | |
| TTATTGATAAGGTGAACTGA+GGG | + | chr8.4:20127456-20127475 | MS.gene43264:intron | 30.0% | |
| TTGACTTATTGCTATGCATA+TGG | - | chr8.4:20126864-20126883 | None:intergenic | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | + | chr8.4:20127188-20127207 | MS.gene43264:CDS | 30.0% | |
| TTTATTGATAAGGTGAACTG+AGG | + | chr8.4:20127455-20127474 | MS.gene43264:intron | 30.0% | |
| ! | GATTTTCAGTTAATGTACCA+GGG | + | chr8.4:20128109-20128128 | MS.gene43264:CDS | 30.0% |
| ! | TGACACTTTGAAAGAAATTG+GGG | + | chr8.4:20128179-20128198 | MS.gene43264:CDS | 30.0% |
| !!! | AGGTTTTGGAAAATTTGAAG+AGG | + | chr8.4:20126681-20126700 | MS.gene43264:CDS | 30.0% |
| AAAATGTGAGACCAAGACAA+AGG | + | chr8.4:20126792-20126811 | MS.gene43264:CDS | 35.0% | |
| ACAGTAACAAACCTTTGTCT+TGG | - | chr8.4:20126806-20126825 | None:intergenic | 35.0% | |
| ACATGTATGGACAACTATGA+AGG | + | chr8.4:20127755-20127774 | MS.gene43264:intron | 35.0% | |
| ATGAATACTTTCATTCTGGC+TGG | + | chr8.4:20126888-20126907 | MS.gene43264:intron | 35.0% | |
| ATGATGTACCAAGAGGAAAA+AGG | - | chr8.4:20127735-20127754 | None:intergenic | 35.0% | |
| CAATCAAAATAACGTAGCAC+CGG | - | chr8.4:20126945-20126964 | None:intergenic | 35.0% | |
| CATGTATGGACAACTATGAA+GGG | + | chr8.4:20127756-20127775 | MS.gene43264:intron | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | + | chr8.4:20128028-20128047 | MS.gene43264:CDS | 35.0% | |
| CTTGGTACATCATACATGTA+TGG | + | chr8.4:20127742-20127761 | MS.gene43264:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+AGG | + | chr8.4:20127582-20127601 | MS.gene43264:CDS | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | + | chr8.4:20127190-20127209 | MS.gene43264:CDS | 35.0% | |
| TACATGTATGATGTACCAAG+AGG | - | chr8.4:20127742-20127761 | None:intergenic | 35.0% | |
| TCTATTGCTAAGAAGGGTTA+TGG | - | chr8.4:20127249-20127268 | None:intergenic | 35.0% | |
| TCTCTTTCACTATTGGTATC+AGG | + | chr8.4:20126990-20127009 | MS.gene43264:intron | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | + | chr8.4:20128137-20128156 | MS.gene43264:CDS | 35.0% | |
| ! | AAAACCTACCTTTTTCCTCT+TGG | + | chr8.4:20127724-20127743 | MS.gene43264:intron | 35.0% |
| ! | AAACACTTACTGACCTCTTT+TGG | - | chr8.4:20127704-20127723 | None:intergenic | 35.0% |
| ! | GGATTTTCAGTTAATGTACC+AGG | + | chr8.4:20128108-20128127 | MS.gene43264:CDS | 35.0% |
| ! | TGAATACTTTCATTCTGGCT+GGG | + | chr8.4:20126889-20126908 | MS.gene43264:intron | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | + | chr8.4:20128033-20128052 | MS.gene43264:CDS | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | - | chr8.4:20128164-20128183 | None:intergenic | 35.0% |
| AATGAACACAGCAGAAGACT+TGG | - | chr8.4:20128211-20128230 | None:intergenic | 40.0% | |
| ATCCAATTGTTGTAGCCGAA+GGG | - | chr8.4:20126770-20126789 | None:intergenic | 40.0% | |
| CAGTGTTCCAAAACTCTACT+TGG | + | chr8.4:20127344-20127363 | MS.gene43264:CDS | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | + | chr8.4:20128131-20128150 | MS.gene43264:CDS | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | + | chr8.4:20128027-20128046 | MS.gene43264:CDS | 40.0% | |
| TATCCAATTGTTGTAGCCGA+AGG | - | chr8.4:20126771-20126790 | None:intergenic | 40.0% | |
| TGTACCAAGAGGAAAAAGGT+AGG | - | chr8.4:20127731-20127750 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | + | chr8.4:20127404-20127423 | MS.gene43264:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | + | chr8.4:20127144-20127163 | MS.gene43264:CDS | 40.0% | |
| TTTGATCAGCTGCAAGAATG+AGG | + | chr8.4:20127941-20127960 | MS.gene43264:intron | 40.0% | |
| ! | GTCTAAATATCTCTCTGGGA+TGG | + | chr8.4:20128032-20128051 | MS.gene43264:CDS | 40.0% |
| !!! | CAAGTAGAGTTTTGGAACAC+TGG | - | chr8.4:20127346-20127365 | None:intergenic | 40.0% |
| AAGAATGAGGTTGGCAGCTA+AGG | + | chr8.4:20127954-20127973 | MS.gene43264:CDS | 45.0% | |
| AATGTTGTGGGGACATCTCA+CGG | - | chr8.4:20127626-20127645 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | + | chr8.4:20127945-20127964 | MS.gene43264:intron | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | + | chr8.4:20127501-20127520 | MS.gene43264:intron | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | + | chr8.4:20128087-20128106 | MS.gene43264:CDS | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | - | chr8.4:20128079-20128098 | None:intergenic | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | + | chr8.4:20128216-20128235 | MS.gene43264:CDS | 45.0% | |
| TTCCTGGGAAAACGAATTGC+CGG | + | chr8.4:20126736-20126755 | MS.gene43264:CDS | 45.0% | |
| TTGCAAATTAAGCGAGCCGA+GGG | + | chr8.4:20128000-20128019 | MS.gene43264:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | - | chr8.4:20128129-20128148 | None:intergenic | 45.0% |
| ! | ATTCGTTTTCCCAGGAACCA+TGG | - | chr8.4:20126733-20126752 | None:intergenic | 45.0% |
| ! | GCGTCATCCAAGTAGAGTTT+TGG | - | chr8.4:20127354-20127373 | None:intergenic | 45.0% |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | + | chr8.4:20126667-20126686 | MS.gene43264:CDS | 45.0% |
| !! | CGTGCAAGTTGATCAGTCTA+CGG | + | chr8.4:20126645-20126664 | MS.gene43264:CDS | 45.0% |
| AGCCAGATGAGCATGTGAAG+CGG | + | chr8.4:20127559-20127578 | MS.gene43264:CDS | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | + | chr8.4:20128066-20128085 | MS.gene43264:CDS | 50.0% | |
| CATCCACAATGGCTTGACGT+TGG | - | chr8.4:20128068-20128087 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+GGG | + | chr8.4:20126721-20126740 | MS.gene43264:CDS | 50.0% | |
| CTCCCTTCGGCTACAACAAT+TGG | + | chr8.4:20126765-20126784 | MS.gene43264:CDS | 50.0% | |
| CTTGCAAATTAAGCGAGCCG+AGG | + | chr8.4:20127999-20128018 | MS.gene43264:CDS | 50.0% | |
| CTTGGCAGACAAGGCTAATG+AGG | + | chr8.4:20127162-20127181 | MS.gene43264:CDS | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | - | chr8.4:20128208-20128227 | None:intergenic | 50.0% | |
| GGAGAAGTCCATCGCGAATT+TGG | - | chr8.4:20128269-20128288 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | + | chr8.4:20128222-20128241 | MS.gene43264:CDS | 50.0% | |
| GTTGCTAGCCAAATTCGCGA+TGG | + | chr8.4:20128258-20128277 | MS.gene43264:CDS | 50.0% | |
| GTTGGCAGCTAAGGAGAAAG+CGG | + | chr8.4:20127963-20127982 | MS.gene43264:CDS | 50.0% | |
| TCTACGGTGGCTATGAGAGA+AGG | + | chr8.4:20126661-20126680 | MS.gene43264:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | - | chr8.4:20128019-20128038 | None:intergenic | 50.0% | |
| ! | AATTCGCGATGGACTTCTCC+AGG | + | chr8.4:20128269-20128288 | MS.gene43264:CDS | 50.0% |
| ! | ATTCGCGATGGACTTCTCCA+GGG | + | chr8.4:20128270-20128289 | MS.gene43264:CDS | 50.0% |
| !! | CTCATTAGCCTTGTCTGCCA+AGG | - | chr8.4:20127164-20127183 | None:intergenic | 50.0% |
| !! | GCAAGTTGATCAGTCTACGG+TGG | + | chr8.4:20126648-20126667 | MS.gene43264:CDS | 50.0% |
| !! | TTTGAAGAGGTGCTTCAGCC+AGG | + | chr8.4:20126694-20126713 | MS.gene43264:CDS | 50.0% |
| AATTAAGCGAGCCGAGGGTG+AGG | + | chr8.4:20128005-20128024 | MS.gene43264:CDS | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | + | chr8.4:20127153-20127172 | MS.gene43264:CDS | 55.0% | |
| CAGGATGCCATTGCATGCCA+TGG | + | chr8.4:20126713-20126732 | MS.gene43264:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+TGG | - | chr8.4:20126715-20126734 | None:intergenic | 55.0% | |
| CCAGGAACCATGGCATGCAA+TGG | - | chr8.4:20126723-20126742 | None:intergenic | 55.0% | |
| CCATTGCATGCCATGGTTCC+TGG | + | chr8.4:20126720-20126739 | MS.gene43264:CDS | 55.0% | |
| GCCAGATGAGCATGTGAAGC+GGG | + | chr8.4:20127560-20127579 | MS.gene43264:CDS | 55.0% | |
| TAGCCGAAGGGAGAGATGAC+CGG | - | chr8.4:20126758-20126777 | None:intergenic | 55.0% | |
| TCGCCAACGTCAAGCCATTG+TGG | + | chr8.4:20128062-20128081 | MS.gene43264:CDS | 55.0% | |
| TTGCCGGTCATCTCTCCCTT+CGG | + | chr8.4:20126752-20126771 | MS.gene43264:CDS | 55.0% | |
| ! | GACCGGCAATTCGTTTTCCC+AGG | - | chr8.4:20126741-20126760 | None:intergenic | 55.0% |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | - | chr8.4:20127159-20127178 | None:intergenic | 55.0% |
| GCCCGCTTCACATGCTCATC+TGG | - | chr8.4:20127564-20127583 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAAGCGG+AGG | + | chr8.4:20127966-20127985 | MS.gene43264:CDS | 60.0% | |
| CGAACAGCGCCAGGTCCATG+TGG | - | chr8.4:20128234-20128253 | None:intergenic | 65.0% | |
| GCAACATCGCGAACAGCGCC+AGG | - | chr8.4:20128243-20128262 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20126625 | 20128305 | 20126625 | ID=MS.gene43264 |
| chr8.4 | mRNA | 20126625 | 20128305 | 20126625 | ID=MS.gene43264.t1;Parent=MS.gene43264 |
| chr8.4 | exon | 20126625 | 20126813 | 20126625 | ID=MS.gene43264.t1.exon1;Parent=MS.gene43264.t1 |
| chr8.4 | CDS | 20126625 | 20126813 | 20126625 | ID=cds.MS.gene43264.t1;Parent=MS.gene43264.t1 |
| chr8.4 | exon | 20127118 | 20127238 | 20127118 | ID=MS.gene43264.t1.exon2;Parent=MS.gene43264.t1 |
| chr8.4 | CDS | 20127118 | 20127238 | 20127118 | ID=cds.MS.gene43264.t1;Parent=MS.gene43264.t1 |
| chr8.4 | exon | 20127334 | 20127425 | 20127334 | ID=MS.gene43264.t1.exon3;Parent=MS.gene43264.t1 |
| chr8.4 | CDS | 20127334 | 20127425 | 20127334 | ID=cds.MS.gene43264.t1;Parent=MS.gene43264.t1 |
| chr8.4 | exon | 20127507 | 20127603 | 20127507 | ID=MS.gene43264.t1.exon4;Parent=MS.gene43264.t1 |
| chr8.4 | CDS | 20127507 | 20127603 | 20127507 | ID=cds.MS.gene43264.t1;Parent=MS.gene43264.t1 |
| chr8.4 | exon | 20127950 | 20128305 | 20127950 | ID=MS.gene43264.t1.exon5;Parent=MS.gene43264.t1 |
| chr8.4 | CDS | 20127950 | 20128305 | 20127950 | ID=cds.MS.gene43264.t1;Parent=MS.gene43264.t1 |
| Gene Sequence |
| Protein sequence |
