Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43265.t1 | ACJ85369.1 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 5.60E-154 | 553.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43265.t1 | Q6L4S3 | 86.5 | 281 | 38 | 0 | 1 | 281 | 1 | 281 | 7.5e-139 | 494.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43265.t1 | B7FKT5 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 4.1e-154 | 553.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene43265 | MS.gene028857 | PPI |
| MS.gene59292 | MS.gene43265 | PPI |
| MS.gene68929 | MS.gene43265 | PPI |
| MS.gene31416 | MS.gene43265 | PPI |
| MS.gene029948 | MS.gene43265 | PPI |
| MS.gene20481 | MS.gene43265 | PPI |
| MS.gene055768 | MS.gene43265 | PPI |
| MS.gene043467 | MS.gene43265 | PPI |
| MS.gene030984 | MS.gene43265 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43265.t1 | MTR_4g107720 | 93.662 | 284 | 18 | 0 | 1 | 284 | 1 | 284 | 0.0 | 535 |
| MS.gene43265.t1 | MTR_4g107810 | 93.617 | 282 | 18 | 0 | 1 | 282 | 1 | 282 | 0.0 | 531 |
| MS.gene43265.t1 | MTR_4g107760 | 93.617 | 282 | 18 | 0 | 1 | 282 | 1 | 282 | 0.0 | 531 |
| MS.gene43265.t1 | MTR_4g107810 | 93.617 | 282 | 18 | 0 | 1 | 282 | 61 | 342 | 0.0 | 530 |
| MS.gene43265.t1 | MTR_4g107830 | 85.953 | 299 | 27 | 1 | 1 | 284 | 1 | 299 | 0.0 | 528 |
| MS.gene43265.t1 | MTR_4g107730 | 93.310 | 284 | 17 | 1 | 1 | 284 | 1 | 282 | 0.0 | 518 |
| MS.gene43265.t1 | MTR_6g011380 | 81.560 | 282 | 52 | 0 | 1 | 282 | 1 | 282 | 3.92e-175 | 484 |
| MS.gene43265.t1 | MTR_8g469160 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 1.12e-173 | 481 |
| MS.gene43265.t1 | MTR_6g460470 | 58.803 | 284 | 115 | 1 | 1 | 282 | 1 | 284 | 3.83e-119 | 343 |
| MS.gene43265.t1 | MTR_4g107700 | 91.566 | 83 | 7 | 0 | 202 | 284 | 6 | 88 | 1.42e-49 | 159 |
| MS.gene43265.t1 | MTR_6g060500 | 50.769 | 65 | 19 | 1 | 161 | 212 | 1 | 65 | 4.11e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene43265.t1 | AT5G62740 | 87.234 | 282 | 36 | 0 | 1 | 282 | 1 | 282 | 0.0 | 520 |
| MS.gene43265.t1 | AT1G69840 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 8.74e-172 | 476 |
| MS.gene43265.t1 | AT1G69840 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 8.74e-172 | 476 |
| MS.gene43265.t1 | AT1G69840 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 8.74e-172 | 476 |
| MS.gene43265.t1 | AT1G69840 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 8.74e-172 | 476 |
| MS.gene43265.t1 | AT1G69840 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 8.74e-172 | 476 |
| MS.gene43265.t1 | AT1G69840 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 8.74e-172 | 476 |
| MS.gene43265.t1 | AT1G69840 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 8.74e-172 | 476 |
| MS.gene43265.t1 | AT3G01290 | 77.385 | 283 | 64 | 0 | 1 | 283 | 1 | 283 | 3.82e-168 | 467 |
| MS.gene43265.t1 | AT5G51570 | 58.099 | 284 | 117 | 1 | 1 | 282 | 1 | 284 | 7.80e-122 | 350 |
Find 62 sgRNAs with CRISPR-Local
Find 117 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.235356 | 8.4:-20131443 | MS.gene43265:CDS |
| GGAGAAGTCCGTCACGAATT+TGG | 0.259803 | 8.4:+20131354 | None:intergenic |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.4:-20132969 | MS.gene43265:CDS |
| AATGAACACAGCAGAAGATT+TGG | 0.365320 | 8.4:+20131412 | None:intergenic |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.4:-20132900 | MS.gene43265:CDS |
| TGCAAAAGATGTCATGGATT+TGG | 0.389648 | 8.4:-20131483 | MS.gene43265:CDS |
| GTATCATCCAAGTTGAGCTT+TGG | 0.393932 | 8.4:+20132278 | None:intergenic |
| GCCCGTTTCACATGCTCGTC+TGG | 0.399568 | 8.4:+20132068 | None:intergenic |
| AATTCGTGACGGACTTCTCC+AGG | 0.405210 | 8.4:-20131351 | MS.gene43265:CDS |
| GGTTTGAGAAACAGTGTGAT+TGG | 0.406441 | 8.4:-20131533 | MS.gene43265:CDS |
| GCCAGACGAGCATGTGAAAC+GGG | 0.414388 | 8.4:-20132069 | MS.gene43265:CDS |
| CTATATCAACAATCAGTGTT+TGG | 0.415085 | 8.4:+20132093 | None:intergenic |
| GAACAGGCTATGTCAGCATA+TGG | 0.456835 | 8.4:-20132128 | MS.gene43265:intron |
| AAGTTTGTAAAACGCATCAT+TGG | 0.460677 | 8.4:+20132464 | None:intergenic |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.4:-20132915 | MS.gene43265:CDS |
| CTCTCTTCGGCTACAACAGT+TGG | 0.475891 | 8.4:-20132871 | MS.gene43265:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.4:-20132496 | MS.gene43265:CDS |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.493263 | 8.4:-20132884 | MS.gene43265:CDS |
| TTTGAAGAGGTGCTTCAGCC+AGG | 0.501147 | 8.4:-20132942 | MS.gene43265:CDS |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8.4:+20132924 | None:intergenic |
| AGCCAGACGAGCATGTGAAA+CGG | 0.508785 | 8.4:-20132070 | MS.gene43265:CDS |
| CTGAGTCTAAATATCTCCAT+GGG | 0.528009 | 8.4:-20131592 | MS.gene43265:CDS |
| TCTACAGTGGCTATGAAAGA+AGG | 0.529221 | 8.4:-20132975 | MS.gene43265:CDS |
| AGTAAAGCGAGCCGAGGGTG+AGG | 0.530224 | 8.4:-20131615 | MS.gene43265:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.4:-20131554 | MS.gene43265:CDS |
| ACTACATCGCGAACAGTACC+AGG | 0.535403 | 8.4:+20131380 | None:intergenic |
| ATCATTGGCGTTGTCTGCCA+AGG | 0.539081 | 8.4:+20132479 | None:intergenic |
| GACAAGTGCAAAAGATGTCA+TGG | 0.548649 | 8.4:-20131489 | MS.gene43265:CDS |
| GTCTAAATATCTCCATGGGG+TGG | 0.557451 | 8.4:-20131588 | MS.gene43265:CDS |
| GTGTTCATTCCACACGGACC+TGG | 0.559912 | 8.4:-20131398 | MS.gene43265:CDS |
| GAACACAGCAGAAGATTTGG+AGG | 0.567527 | 8.4:+20131415 | None:intergenic |
| GAGAGTGGCAGCTAAAGAAA+AGG | 0.570066 | 8.4:-20131660 | MS.gene43265:CDS |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8.4:-20132923 | MS.gene43265:CDS |
| TAACAAACGAACCTTTGTCT+TGG | 0.574288 | 8.4:+20132833 | None:intergenic |
| GGCAGCTAAAGAAAAGGCGG+AGG | 0.575338 | 8.4:-20131654 | MS.gene43265:CDS |
| TCTAAATATCTCCATGGGGT+GGG | 0.579878 | 8.4:-20131587 | MS.gene43265:CDS |
| GCTGAGTCTAAATATCTCCA+TGG | 0.580913 | 8.4:-20131593 | MS.gene43265:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.4:+20132916 | None:intergenic |
| ATATGTTCCAAAGCTCAACT+TGG | 0.583632 | 8.4:-20132285 | MS.gene43265:CDS |
| AAATGAAATCGCAAAAGCTG+TGG | 0.586140 | 8.4:-20132243 | MS.gene43265:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.595457 | 8.4:-20132225 | MS.gene43265:intron |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.4:+20131604 | None:intergenic |
| TGGCGTTGTCTGCCAAGGCA+CGG | 0.603453 | 8.4:+20132484 | None:intergenic |
| GAAGCTACTCATGAGAACCC+TGG | 0.616440 | 8.4:+20131333 | None:intergenic |
| ATTCGTGACGGACTTCTCCA+GGG | 0.627782 | 8.4:-20131350 | MS.gene43265:CDS |
| ATCAGCTGCAAGAATGAGAG+TGG | 0.628496 | 8.4:-20131675 | MS.gene43265:intron |
| GCTATGAATGAAATCAATGC+CGG | 0.629714 | 8.4:-20132047 | MS.gene43265:intron |
| AGTGGCAGCTAAAGAAAAGG+CGG | 0.636183 | 8.4:-20131657 | MS.gene43265:CDS |
| CACAGCAGAAGATTTGGAGG+CGG | 0.636213 | 8.4:+20131418 | None:intergenic |
| CTTGCAAGTAAAGCGAGCCG+AGG | 0.639259 | 8.4:-20131621 | MS.gene43265:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.4:-20131558 | MS.gene43265:CDS |
| TTGCAAGTAAAGCGAGCCGA+GGG | 0.652348 | 8.4:-20131620 | MS.gene43265:CDS |
| TCTGCTGTGTTCATTCCACA+CGG | 0.654464 | 8.4:-20131404 | MS.gene43265:CDS |
| GACGAGCAATACCCACCCCA+TGG | 0.656560 | 8.4:+20131576 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.662587 | 8.4:-20132452 | MS.gene43265:CDS |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8.4:-20132844 | MS.gene43265:intron |
| GTTTCTCAAACCATCCACAA+TGG | 0.673360 | 8.4:+20131544 | None:intergenic |
| GTAGTAAGCCAAATTCGTGA+CGG | 0.698713 | 8.4:-20131362 | MS.gene43265:CDS |
| CGAACAGTACCAGGTCCGTG+TGG | 0.712266 | 8.4:+20131389 | None:intergenic |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.4:+20131459 | None:intergenic |
| GCAAGTTGATCAATCTACAG+TGG | 0.715524 | 8.4:-20132988 | MS.gene43265:CDS |
| TGAGTCTAAATATCTCCATG+GGG | 0.748301 | 8.4:-20131591 | MS.gene43265:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTTTTTAATTTTCATT+AGG | - | chr8.4:20131617-20131636 | MS.gene43265:CDS | 10.0% |
| !!! | TTTAATATTTATTTTCTTTC+AGG | - | chr8.4:20131804-20131823 | MS.gene43265:intron | 10.0% |
| !! | AATATTTAAATTATCAGCTA+AGG | - | chr8.4:20132008-20132027 | MS.gene43265:intron | 15.0% |
| !! | AACATGTAATAACTAATAAG+TGG | - | chr8.4:20131979-20131998 | MS.gene43265:intron | 20.0% |
| !! | ACAATTAGCATTTATTGATA+TGG | - | chr8.4:20132164-20132183 | MS.gene43265:intron | 20.0% |
| !! | ATTAATTCATTGGAAAAACA+TGG | + | chr8.4:20131775-20131794 | None:intergenic | 20.0% |
| !! | GAACAAAATAGATAGATATT+TGG | + | chr8.4:20132614-20132633 | None:intergenic | 20.0% |
| !!! | ATATCTATCTATTTTGTTCT+TGG | - | chr8.4:20132615-20132634 | MS.gene43265:intron | 20.0% |
| !!! | TACATATAGAGTATTGAAAA+TGG | + | chr8.4:20131723-20131742 | None:intergenic | 20.0% |
| ! | AAAAACATAAGCTTGAATCT+GGG | + | chr8.4:20131923-20131942 | None:intergenic | 25.0% |
| ! | ACCAATCAACATTAATTCAT+TGG | + | chr8.4:20131785-20131804 | None:intergenic | 25.0% |
| ! | ATCATAACATGACTATCTAT+TGG | + | chr8.4:20132517-20132536 | None:intergenic | 25.0% |
| ! | GAAACATGGTAAATTATACA+AGG | + | chr8.4:20132573-20132592 | None:intergenic | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | + | chr8.4:20132645-20132664 | None:intergenic | 25.0% |
| ! | TCAGATAATAACAATACTGT+GGG | + | chr8.4:20132354-20132373 | None:intergenic | 25.0% |
| ! | TCCAATGAATTAATGTTGAT+TGG | - | chr8.4:20131781-20131800 | MS.gene43265:intron | 25.0% |
| ! | TTCAGATAATAACAATACTG+TGG | + | chr8.4:20132355-20132374 | None:intergenic | 25.0% |
| ! | TTCTGTTGCAAAAATGATTT+AGG | - | chr8.4:20132457-20132476 | MS.gene43265:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.4:20132905-20132924 | MS.gene43265:CDS | 25.0% |
| ! | TTTGCAACAGAATTAGATTT+AGG | + | chr8.4:20132449-20132468 | None:intergenic | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | - | chr8.4:20132638-20132657 | MS.gene43265:intron | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.4:20131925-20131944 | MS.gene43265:intron | 25.0% |
| AAGTTTGTAAAACGCATCAT+TGG | + | chr8.4:20131887-20131906 | None:intergenic | 30.0% | |
| AATGATTTAGGCATTTCCTT+TGG | - | chr8.4:20132469-20132488 | MS.gene43265:CDS | 30.0% | |
| AATGTACAGTGTATCATGTT+AGG | + | chr8.4:20131748-20131767 | None:intergenic | 30.0% | |
| ACTGAGGATTTATGTAACTT+TGG | - | chr8.4:20132190-20132209 | MS.gene43265:intron | 30.0% | |
| AGGATTTATGTAACTTTGGA+TGG | - | chr8.4:20132194-20132213 | MS.gene43265:intron | 30.0% | |
| ATGATTTAGGCATTTCCTTT+GGG | - | chr8.4:20132470-20132489 | MS.gene43265:CDS | 30.0% | |
| ATGTATGTATGGAAAACTGT+GGG | - | chr8.4:20132381-20132400 | MS.gene43265:intron | 30.0% | |
| ATGTTTATGTATTGCTAAGC+AGG | + | chr8.4:20131964-20131983 | None:intergenic | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | + | chr8.4:20131924-20131943 | None:intergenic | 30.0% | |
| CAGATAATAACAATACTGTG+GGG | + | chr8.4:20132353-20132372 | None:intergenic | 30.0% | |
| CTATATCAACAATCAGTGTT+TGG | + | chr8.4:20132258-20132277 | None:intergenic | 30.0% | |
| CTGAATTACACATGTATGTA+TGG | - | chr8.4:20132370-20132389 | MS.gene43265:intron | 30.0% | |
| TGAATACTTTCTCTTTGACT+AGG | - | chr8.4:20131595-20131614 | MS.gene43265:CDS | 30.0% | |
| TGTTTATGTATTGCTAAGCA+GGG | + | chr8.4:20131963-20131982 | None:intergenic | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.4:20131896-20131915 | MS.gene43265:intron | 30.0% | |
| TTTATTGATATGGTGAACTG+AGG | - | chr8.4:20132174-20132193 | MS.gene43265:intron | 30.0% | |
| ! | ATGGTCTTACAAAAACATAC+CGG | + | chr8.4:20132323-20132342 | None:intergenic | 30.0% |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.4:20132837-20132856 | MS.gene43265:intron | 30.0% |
| !! | ATTTTCATTAGGTGTCATCA+CGG | - | chr8.4:20131628-20131647 | MS.gene43265:CDS | 30.0% |
| !!! | AGGTTTTGGAAAATTTGAAG+AGG | - | chr8.4:20131393-20131412 | MS.gene43265:CDS | 30.0% |
| AAAATGTGAGACCAAGACAA+AGG | - | chr8.4:20131504-20131523 | MS.gene43265:CDS | 35.0% | |
| AAATGAAATCGCAAAAGCTG+TGG | - | chr8.4:20132105-20132124 | MS.gene43265:CDS | 35.0% | |
| AATGAACACAGCAGAAGATT+TGG | + | chr8.4:20132939-20132958 | None:intergenic | 35.0% | |
| ATATGTTCCAAAGCTCAACT+TGG | - | chr8.4:20132063-20132082 | MS.gene43265:CDS | 35.0% | |
| CATAGTTAATGCGAACATAC+AGG | + | chr8.4:20131670-20131689 | None:intergenic | 35.0% | |
| CATGAAATGACGTGAAGATT+TGG | + | chr8.4:20131562-20131581 | None:intergenic | 35.0% | |
| CATGTATGTATGGAAAACTG+TGG | - | chr8.4:20132380-20132399 | MS.gene43265:intron | 35.0% | |
| CTGAGTCTAAATATCTCCAT+GGG | - | chr8.4:20132756-20132775 | MS.gene43265:intron | 35.0% | |
| CTGTATGTTCGCATTAACTA+TGG | - | chr8.4:20131668-20131687 | MS.gene43265:CDS | 35.0% | |
| CTTTCACTAGTATATCGATC+AGG | - | chr8.4:20131697-20131716 | MS.gene43265:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+CGG | - | chr8.4:20132301-20132320 | MS.gene43265:intron | 35.0% | |
| TAACAAACGAACCTTTGTCT+TGG | + | chr8.4:20131518-20131537 | None:intergenic | 35.0% | |
| TGAGTCTAAATATCTCCATG+GGG | - | chr8.4:20132757-20132776 | MS.gene43265:intron | 35.0% | |
| TGCAAAAGATGTCATGGATT+TGG | - | chr8.4:20132865-20132884 | MS.gene43265:CDS | 35.0% | |
| TGTATGTATGGAAAACTGTG+GGG | - | chr8.4:20132382-20132401 | MS.gene43265:intron | 35.0% | |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.4:20132836-20132855 | MS.gene43265:intron | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.4:20132892-20132911 | None:intergenic | 35.0% |
| AAAGAAGCAAAGCAACCCAA+AGG | + | chr8.4:20132488-20132507 | None:intergenic | 40.0% | |
| AAGCACTCGATAGAGAAACA+TGG | + | chr8.4:20132587-20132606 | None:intergenic | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | - | chr8.4:20132859-20132878 | MS.gene43265:CDS | 40.0% | |
| GCTGAGTCTAAATATCTCCA+TGG | - | chr8.4:20132755-20132774 | MS.gene43265:intron | 40.0% | |
| GGTTTGAGAAACAGTGTGAT+TGG | - | chr8.4:20132815-20132834 | MS.gene43265:intron | 40.0% | |
| GTAGTAAGCCAAATTCGTGA+CGG | - | chr8.4:20132986-20133005 | MS.gene43265:CDS | 40.0% | |
| GTTTCTCAAACCATCCACAA+TGG | + | chr8.4:20132807-20132826 | None:intergenic | 40.0% | |
| TAACTTTGGATGGTCTGAAC+AGG | - | chr8.4:20132204-20132223 | MS.gene43265:intron | 40.0% | |
| TCTAAATATCTCCATGGGGT+GGG | - | chr8.4:20132761-20132780 | MS.gene43265:intron | 40.0% | |
| TCTACAGTGGCTATGAAAGA+AGG | - | chr8.4:20131373-20131392 | MS.gene43265:CDS | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.4:20132123-20132142 | MS.gene43265:CDS | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.4:20131448-20131467 | MS.gene43265:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.4:20131852-20131871 | MS.gene43265:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.4:20131445-20131464 | None:intergenic | 40.0% |
| ! | GTATCATCCAAGTTGAGCTT+TGG | + | chr8.4:20132073-20132092 | None:intergenic | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.4:20131379-20131398 | MS.gene43265:CDS | 40.0% |
| ! | TTGGGTTGCTTTGCTTCTTT+GGG | - | chr8.4:20132488-20132507 | MS.gene43265:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTACAG+TGG | - | chr8.4:20131360-20131379 | MS.gene43265:CDS | 40.0% |
| !! | TTTGGGTTGCTTTGCTTCTT+TGG | - | chr8.4:20132487-20132506 | MS.gene43265:CDS | 40.0% |
| AATACTGTGGGGACATCTCA+TGG | + | chr8.4:20132342-20132361 | None:intergenic | 45.0% | |
| AGTGGCAGCTAAAGAAAAGG+CGG | - | chr8.4:20132691-20132710 | MS.gene43265:intron | 45.0% | |
| ATCAGCTGCAAGAATGAGAG+TGG | - | chr8.4:20132673-20132692 | MS.gene43265:intron | 45.0% | |
| GAACACAGCAGAAGATTTGG+AGG | + | chr8.4:20132936-20132955 | None:intergenic | 45.0% | |
| GAACAGGCTATGTCAGCATA+TGG | - | chr8.4:20132220-20132239 | MS.gene43265:intron | 45.0% | |
| GAGAGTGGCAGCTAAAGAAA+AGG | - | chr8.4:20132688-20132707 | MS.gene43265:intron | 45.0% | |
| GTCTAAATATCTCCATGGGG+TGG | - | chr8.4:20132760-20132779 | MS.gene43265:intron | 45.0% | |
| TCTGCTGTGTTCATTCCACA+CGG | - | chr8.4:20132944-20132963 | MS.gene43265:CDS | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | - | chr8.4:20131464-20131483 | MS.gene43265:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | + | chr8.4:20132857-20132876 | None:intergenic | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | + | chr8.4:20131453-20131472 | None:intergenic | 45.0% |
| ! | TGGGTTGCTTTGCTTCTTTG+GGG | - | chr8.4:20132489-20132508 | MS.gene43265:CDS | 45.0% |
| ACTACATCGCGAACAGTACC+AGG | + | chr8.4:20132971-20132990 | None:intergenic | 50.0% | |
| AGCCAGACGAGCATGTGAAA+CGG | - | chr8.4:20132278-20132297 | MS.gene43265:CDS | 50.0% | |
| ATCATTGGCGTTGTCTGCCA+AGG | + | chr8.4:20131872-20131891 | None:intergenic | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.4:20132794-20132813 | MS.gene43265:intron | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.4:20131435-20131454 | None:intergenic | 50.0% | |
| CACAGCAGAAGATTTGGAGG+CGG | + | chr8.4:20132933-20132952 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.4:20131433-20131452 | MS.gene43265:CDS | 50.0% | |
| CTCTCTTCGGCTACAACAGT+TGG | - | chr8.4:20131477-20131496 | MS.gene43265:CDS | 50.0% | |
| GGAGAAGTCCGTCACGAATT+TGG | + | chr8.4:20132997-20133016 | None:intergenic | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | - | chr8.4:20132790-20132809 | MS.gene43265:intron | 50.0% | |
| TTGCAAGTAAAGCGAGCCGA+GGG | - | chr8.4:20132728-20132747 | MS.gene43265:intron | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.4:20132747-20132766 | None:intergenic | 50.0% | |
| ! | GGGTTGCTTTGCTTCTTTGG+GGG | - | chr8.4:20132490-20132509 | MS.gene43265:CDS | 50.0% |
| !! | AATTCGTGACGGACTTCTCC+AGG | - | chr8.4:20132997-20133016 | MS.gene43265:CDS | 50.0% |
| !! | ATTCGTGACGGACTTCTCCA+GGG | - | chr8.4:20132998-20133017 | MS.gene43265:CDS | 50.0% |
| !! | TTTGAAGAGGTGCTTCAGCC+AGG | - | chr8.4:20131406-20131425 | MS.gene43265:CDS | 50.0% |
| CAGGATGCCATTGCATGCCA+TGG | - | chr8.4:20131425-20131444 | MS.gene43265:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+TGG | + | chr8.4:20131427-20131446 | None:intergenic | 55.0% | |
| CTTGCAAGTAAAGCGAGCCG+AGG | - | chr8.4:20132727-20132746 | MS.gene43265:intron | 55.0% | |
| GCCAGACGAGCATGTGAAAC+GGG | - | chr8.4:20132279-20132298 | MS.gene43265:CDS | 55.0% | |
| GGCAGCTAAAGAAAAGGCGG+AGG | - | chr8.4:20132694-20132713 | MS.gene43265:intron | 55.0% | |
| GTGTTCATTCCACACGGACC+TGG | - | chr8.4:20132950-20132969 | MS.gene43265:CDS | 55.0% | |
| AGTAAAGCGAGCCGAGGGTG+AGG | - | chr8.4:20132733-20132752 | MS.gene43265:intron | 60.0% | |
| CGAACAGTACCAGGTCCGTG+TGG | + | chr8.4:20132962-20132981 | None:intergenic | 60.0% | |
| GACGAGCAATACCCACCCCA+TGG | + | chr8.4:20132775-20132794 | None:intergenic | 60.0% | |
| GCCCGTTTCACATGCTCGTC+TGG | + | chr8.4:20132283-20132302 | None:intergenic | 60.0% | |
| TGGCGTTGTCTGCCAAGGCA+CGG | + | chr8.4:20131867-20131886 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 20131337 | 20133033 | 20131337 | ID=MS.gene43265 |
| chr8.4 | mRNA | 20131337 | 20133033 | 20131337 | ID=MS.gene43265.t1;Parent=MS.gene43265 |
| chr8.4 | exon | 20132845 | 20133033 | 20132845 | ID=MS.gene43265.t1.exon1;Parent=MS.gene43265.t1 |
| chr8.4 | CDS | 20132845 | 20133033 | 20132845 | ID=cds.MS.gene43265.t1;Parent=MS.gene43265.t1 |
| chr8.4 | exon | 20132424 | 20132544 | 20132424 | ID=MS.gene43265.t1.exon2;Parent=MS.gene43265.t1 |
| chr8.4 | CDS | 20132424 | 20132544 | 20132424 | ID=cds.MS.gene43265.t1;Parent=MS.gene43265.t1 |
| chr8.4 | exon | 20132226 | 20132317 | 20132226 | ID=MS.gene43265.t1.exon3;Parent=MS.gene43265.t1 |
| chr8.4 | CDS | 20132226 | 20132317 | 20132226 | ID=cds.MS.gene43265.t1;Parent=MS.gene43265.t1 |
| chr8.4 | exon | 20132048 | 20132144 | 20132048 | ID=MS.gene43265.t1.exon4;Parent=MS.gene43265.t1 |
| chr8.4 | CDS | 20132048 | 20132144 | 20132048 | ID=cds.MS.gene43265.t1;Parent=MS.gene43265.t1 |
| chr8.4 | exon | 20131337 | 20131692 | 20131337 | ID=MS.gene43265.t1.exon5;Parent=MS.gene43265.t1 |
| chr8.4 | CDS | 20131337 | 20131692 | 20131337 | ID=cds.MS.gene43265.t1;Parent=MS.gene43265.t1 |
| Gene Sequence |
| Protein sequence |
