Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44217.t1 | XP_003629262.1 | 98.3 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 5.90E-240 | 839.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44217.t1 | B6SJQ0 | 54.5 | 435 | 175 | 7 | 3 | 423 | 2 | 427 | 1.1e-122 | 441.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44217.t1 | G7LB65 | 98.3 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 4.2e-240 | 839.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049501 | MS.gene44217 | 0.804883 | 1.74E-49 | -1.69E-46 |
| MS.gene050020 | MS.gene44217 | 0.816628 | 5.01E-52 | -1.69E-46 |
| MS.gene050438 | MS.gene44217 | 0.801601 | 8.34E-49 | -1.69E-46 |
| MS.gene050959 | MS.gene44217 | 0.805841 | 1.10E-49 | -1.69E-46 |
| MS.gene051388 | MS.gene44217 | 0.801615 | 8.28E-49 | -1.69E-46 |
| MS.gene051719 | MS.gene44217 | 0.81355 | 2.42E-51 | -1.69E-46 |
| MS.gene052611 | MS.gene44217 | 0.814911 | 1.21E-51 | -1.69E-46 |
| MS.gene052613 | MS.gene44217 | 0.808367 | 3.21E-50 | -1.69E-46 |
| MS.gene052896 | MS.gene44217 | 0.804045 | 2.61E-49 | -1.69E-46 |
| MS.gene053221 | MS.gene44217 | 0.803922 | 2.77E-49 | -1.69E-46 |
| MS.gene053998 | MS.gene44217 | 0.814562 | 1.45E-51 | -1.69E-46 |
| MS.gene054801 | MS.gene44217 | 0.810258 | 1.26E-50 | -1.69E-46 |
| MS.gene055357 | MS.gene44217 | 0.838782 | 2.34E-57 | -1.69E-46 |
| MS.gene055358 | MS.gene44217 | 0.832693 | 8.17E-56 | -1.69E-46 |
| MS.gene055466 | MS.gene44217 | 0.821938 | 3.09E-53 | -1.69E-46 |
| MS.gene055608 | MS.gene44217 | 0.828814 | 7.29E-55 | -1.69E-46 |
| MS.gene057060 | MS.gene44217 | 0.801375 | 9.28E-49 | -1.69E-46 |
| MS.gene057444 | MS.gene44217 | 0.80581 | 1.12E-49 | -1.69E-46 |
| MS.gene060322 | MS.gene44217 | 0.809668 | 1.69E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44217.t1 | MTR_8g075150 | 98.349 | 424 | 7 | 0 | 1 | 424 | 1 | 424 | 0.0 | 875 |
| MS.gene44217.t1 | MTR_5g022670 | 76.303 | 422 | 93 | 3 | 3 | 424 | 2 | 416 | 0.0 | 664 |
| MS.gene44217.t1 | MTR_4g086330 | 29.940 | 167 | 100 | 5 | 252 | 404 | 4 | 167 | 1.73e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44217.t1 | AT4G35920 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 561 |
| MS.gene44217.t1 | AT4G35920 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 561 |
| MS.gene44217.t1 | AT4G35920 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 561 |
| MS.gene44217.t1 | AT4G35920 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 561 |
| MS.gene44217.t1 | AT4G35920 | 64.802 | 429 | 136 | 6 | 1 | 423 | 1 | 420 | 0.0 | 561 |
| MS.gene44217.t1 | AT2G17780 | 61.358 | 427 | 147 | 7 | 1 | 423 | 1 | 413 | 2.66e-177 | 501 |
| MS.gene44217.t1 | AT2G17780 | 60.981 | 428 | 149 | 6 | 1 | 423 | 1 | 415 | 2.08e-176 | 499 |
| MS.gene44217.t1 | AT2G17780 | 60.981 | 428 | 149 | 6 | 1 | 423 | 1 | 415 | 2.08e-176 | 499 |
| MS.gene44217.t1 | AT2G17780 | 60.981 | 428 | 149 | 6 | 1 | 423 | 1 | 415 | 2.08e-176 | 499 |
| MS.gene44217.t1 | AT2G17780 | 60.981 | 428 | 149 | 6 | 1 | 423 | 1 | 415 | 2.08e-176 | 499 |
| MS.gene44217.t1 | AT2G17780 | 60.981 | 428 | 149 | 6 | 1 | 423 | 1 | 415 | 2.08e-176 | 499 |
| MS.gene44217.t1 | AT2G17780 | 61.975 | 405 | 138 | 5 | 1 | 402 | 1 | 392 | 2.06e-171 | 486 |
| MS.gene44217.t1 | AT2G17780 | 61.975 | 405 | 138 | 5 | 1 | 402 | 1 | 392 | 2.06e-171 | 486 |
| MS.gene44217.t1 | AT2G17780 | 60.743 | 377 | 132 | 5 | 1 | 374 | 1 | 364 | 3.74e-153 | 439 |
| MS.gene44217.t1 | AT2G17780 | 58.934 | 319 | 115 | 5 | 1 | 316 | 1 | 306 | 2.54e-116 | 342 |
Find 72 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCTAGAGGCTCTCGGGTTTC+AGG | 0.140533 | 8.1:-31886633 | None:intergenic |
| CTGCATCTAAGCCTGTTAAT+TGG | 0.207077 | 8.1:-31886473 | None:intergenic |
| GTGCAAATCCGCGGGGTTTA+TGG | 0.217903 | 8.1:+31889468 | MS.gene44217:CDS |
| TTTGAGAAGGTCATATATTT+TGG | 0.228435 | 8.1:+31886671 | MS.gene44217:CDS |
| GGAACATTGTTTATCAATTT+AGG | 0.249469 | 8.1:+31886742 | MS.gene44217:CDS |
| GCATCTTCATGGGAACAATT+TGG | 0.278027 | 8.1:+31886432 | MS.gene44217:CDS |
| GTGTCCTCTTGGTCATGTTC+TGG | 0.294388 | 8.1:-31887537 | None:intergenic |
| GCAAATGTGGCCCAATTAAC+AGG | 0.308741 | 8.1:+31886462 | MS.gene44217:CDS |
| GCACAACATCTTAAGTTGAT+TGG | 0.319124 | 8.1:+31886567 | MS.gene44217:CDS |
| ACATCATTCACAAGCAAATA+TGG | 0.326010 | 8.1:+31887653 | MS.gene44217:CDS |
| GAAAGACAGTCTGCACCTTT+TGG | 0.334924 | 8.1:-31887509 | None:intergenic |
| TGCATCTAAGCCTGTTAATT+GGG | 0.358164 | 8.1:-31886472 | None:intergenic |
| CACAACATCTTAAGTTGATT+GGG | 0.378407 | 8.1:+31886568 | MS.gene44217:CDS |
| GCTTCGGTGAATGAAAAGTT+TGG | 0.393080 | 8.1:-31887594 | None:intergenic |
| CTACCTTTATTTGCTTGCCA+TGG | 0.394112 | 8.1:+31886716 | MS.gene44217:CDS |
| CTAATTGTTCTAGAGGCTCT+CGG | 0.402132 | 8.1:-31886641 | None:intergenic |
| TCTTCAGGTGATAACTTCTC+TGG | 0.407119 | 8.1:-31887741 | None:intergenic |
| ATCCCATGGCAAGCAAATAA+AGG | 0.407737 | 8.1:-31886719 | None:intergenic |
| GGGCTAGTGTTGATCTTCTC+AGG | 0.411172 | 8.1:-31889742 | None:intergenic |
| ATGCTCGTGCTACTCGAGTC+AGG | 0.411445 | 8.1:+31886826 | MS.gene44217:CDS |
| TTAGATGCAGTAAAGTTGAT+TGG | 0.414089 | 8.1:+31886486 | MS.gene44217:CDS |
| ACAATCTGGTAGTTATCTTC+AGG | 0.415787 | 8.1:-31887756 | None:intergenic |
| GAGACTTGAAGTTATTGAAA+AGG | 0.417718 | 8.1:+31887455 | MS.gene44217:CDS |
| GATATAGCATGGCATCTTCA+TGG | 0.424441 | 8.1:+31886421 | None:intergenic |
| TACCTTTATTTGCTTGCCAT+GGG | 0.431724 | 8.1:+31886717 | MS.gene44217:CDS |
| CTAGAGGCTCTCGGGTTTCA+GGG | 0.434211 | 8.1:-31886632 | None:intergenic |
| AGAATGACCTTTGCTGCCAT+TGG | 0.434613 | 8.1:-31887808 | None:intergenic |
| GTGATATTCTTTCATCATCA+AGG | 0.435431 | 8.1:+31887856 | MS.gene44217:CDS |
| CCCTCCAACTGCACAGTACA+TGG | 0.435922 | 8.1:+31889762 | MS.gene44217:CDS |
| GTTCATATCAGCGGGAAGAT+TGG | 0.443662 | 8.1:+31888543 | MS.gene44217:CDS |
| TAGGAAGATGATGAACATTC+CGG | 0.451122 | 8.1:+31889210 | MS.gene44217:CDS |
| GTTGCTATACTTGCTGCATA+AGG | 0.459740 | 8.1:+31889179 | MS.gene44217:CDS |
| TGTTACTGTATTCTACAATC+TGG | 0.466235 | 8.1:-31887770 | None:intergenic |
| TAGATGCAGTAAAGTTGATT+GGG | 0.468118 | 8.1:+31886487 | MS.gene44217:CDS |
| CTTGCGCTCTTGTACAAGAA+TGG | 0.469657 | 8.1:+31889439 | MS.gene44217:CDS |
| TCAGCACTACAGTGTCCTCT+TGG | 0.474645 | 8.1:-31887548 | None:intergenic |
| GCTGCATAAGGAGGAAGCTT+AGG | 0.476922 | 8.1:+31889191 | MS.gene44217:CDS |
| AACTAAAAGTTCATATCAGC+GGG | 0.478387 | 8.1:+31888535 | MS.gene44217:CDS |
| AATCTTTGAAAATGTTCCAC+AGG | 0.488214 | 8.1:-31888735 | None:intergenic |
| TGACTTTATTGCATATTCGT+TGG | 0.495627 | 8.1:+31889144 | MS.gene44217:CDS |
| TTTATTTGCTTGCCATGGGA+TGG | 0.498857 | 8.1:+31886721 | MS.gene44217:CDS |
| TAATTGTTCTAGAGGCTCTC+GGG | 0.506405 | 8.1:-31886640 | None:intergenic |
| CAAAGTTTCAGAAAAGAATC+CGG | 0.507843 | 8.1:+31888508 | MS.gene44217:CDS |
| ATTGGATGACGAGGACCAAA+AGG | 0.511764 | 8.1:+31887494 | MS.gene44217:CDS |
| GATTCCATGTACTGTGCAGT+TGG | 0.522079 | 8.1:-31889766 | None:intergenic |
| TCCATGTACTGTGCAGTTGG+AGG | 0.523348 | 8.1:-31889763 | None:intergenic |
| GGAGGGAAGTGCAAATCCGC+GGG | 0.525378 | 8.1:+31889460 | MS.gene44217:CDS |
| ATATAGCATGGCATCTTCAT+GGG | 0.527850 | 8.1:+31886422 | None:intergenic |
| TAACTTACATATTGGTCTGT+TGG | 0.528804 | 8.1:-31888771 | None:intergenic |
| TCTGATGCCAATGGCAGCAA+AGG | 0.538606 | 8.1:+31887801 | MS.gene44217:CDS |
| ATTTGGAGAGATTGCAAATG+TGG | 0.539302 | 8.1:+31886449 | MS.gene44217:CDS |
| GCATCTTCTAATTGTTCTAG+AGG | 0.545378 | 8.1:-31886648 | None:intergenic |
| CGCTCTTGTACAAGAATGGA+GGG | 0.554728 | 8.1:+31889443 | MS.gene44217:CDS |
| ATAAACAATGTTCCATCCCA+TGG | 0.566413 | 8.1:-31886733 | None:intergenic |
| CATTGTTTATCAATTTAGGA+AGG | 0.567874 | 8.1:+31886746 | MS.gene44217:CDS |
| CCATGTACTGTGCAGTTGGA+GGG | 0.578134 | 8.1:-31889762 | None:intergenic |
| GGATCAATGTGCGTACACAT+TGG | 0.581545 | 8.1:+31887476 | MS.gene44217:CDS |
| TGCTCGTGCTACTCGAGTCA+GGG | 0.597912 | 8.1:+31886827 | MS.gene44217:CDS |
| GCTATACTTGCTGCATAAGG+AGG | 0.604551 | 8.1:+31889182 | MS.gene44217:CDS |
| GCGCTCTTGTACAAGAATGG+AGG | 0.609334 | 8.1:+31889442 | MS.gene44217:CDS |
| CAACTAAAAGTTCATATCAG+CGG | 0.613618 | 8.1:+31888534 | MS.gene44217:CDS |
| TGGAGGGAAGTGCAAATCCG+CGG | 0.619338 | 8.1:+31889459 | MS.gene44217:CDS |
| AATTAGAAGATGCTTTGAGA+AGG | 0.622727 | 8.1:+31886658 | MS.gene44217:CDS |
| ATCTTTGAAAATGTTCCACA+GGG | 0.634487 | 8.1:-31888734 | None:intergenic |
| AACAGTCATTCTGATGCCAA+TGG | 0.635654 | 8.1:+31887792 | MS.gene44217:CDS |
| TGAAAGCTGCAAATACAGCA+AGG | 0.659950 | 8.1:+31886517 | MS.gene44217:CDS |
| GAAACCAGAACATGACCAAG+AGG | 0.660378 | 8.1:+31887533 | MS.gene44217:CDS |
| TGCGTACACATTGGATGACG+AGG | 0.663358 | 8.1:+31887485 | MS.gene44217:CDS |
| AAGACATTCTTCTATCCCTG+TGG | 0.670537 | 8.1:+31888719 | MS.gene44217:CDS |
| TTGTCGACTAGAGTAATGAG+AGG | 0.690301 | 8.1:-31886804 | None:intergenic |
| GAGGGAAGTGCAAATCCGCG+GGG | 0.769768 | 8.1:+31889461 | MS.gene44217:CDS |
| AAGTCATACCATAAACCCCG+CGG | 0.775462 | 8.1:-31889476 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAACAAATAATAAAAATTC+AGG | + | chr8.1:31888952-31888971 | MS.gene44217:intron | 10.0% |
| !! | AGACATGTATAAAATAAATT+AGG | - | chr8.1:31889569-31889588 | None:intergenic | 15.0% |
| !! | TTCATTATATTATGATATAG+TGG | + | chr8.1:31889309-31889328 | MS.gene44217:intron | 15.0% |
| !!! | AAAAGTGTTAAAAATCTTAA+GGG | - | chr8.1:31888073-31888092 | None:intergenic | 15.0% |
| !!! | AAAGAATATCACTTTTTTTA+TGG | - | chr8.1:31887848-31887867 | None:intergenic | 15.0% |
| !!! | AATTTATTTTATACATGTCT+TGG | + | chr8.1:31889569-31889588 | MS.gene44217:intron | 15.0% |
| !!! | TAAAAGAATATTTTCTTTCA+TGG | + | chr8.1:31888655-31888674 | MS.gene44217:intron | 15.0% |
| !!! | TAAAAGTGTTAAAAATCTTA+AGG | - | chr8.1:31888074-31888093 | None:intergenic | 15.0% |
| !!! | TTAACACTTTTATATTTCTA+GGG | + | chr8.1:31888082-31888101 | MS.gene44217:intron | 15.0% |
| !!! | TTTAACACTTTTATATTTCT+AGG | + | chr8.1:31888081-31888100 | MS.gene44217:intron | 15.0% |
| !! | AAAGATTGTAACTTACATAT+TGG | - | chr8.1:31888782-31888801 | None:intergenic | 20.0% |
| !! | ACAAACATTATACAAAAGAA+AGG | - | chr8.1:31889244-31889263 | None:intergenic | 20.0% |
| !! | CATAATATAATGAACATTAC+CGG | - | chr8.1:31889303-31889322 | None:intergenic | 20.0% |
| !! | GAAAAATACATACAAAGATA+AGG | - | chr8.1:31888599-31888618 | None:intergenic | 20.0% |
| !! | TCAATGAATAGTTTCTTAAT+TGG | - | chr8.1:31888267-31888286 | None:intergenic | 20.0% |
| !! | TTTGAAAATTCTAACTAATC+CGG | - | chr8.1:31887348-31887367 | None:intergenic | 20.0% |
| !!! | ATTTTCTTTTTTAAGTGCTT+CGG | - | chr8.1:31887613-31887632 | None:intergenic | 20.0% |
| !!! | CTTTAGATAGTAAGTTTTTA+TGG | - | chr8.1:31888335-31888354 | None:intergenic | 20.0% |
| !!! | GTTTTAGCTTTATAATATTC+CGG | + | chr8.1:31889281-31889300 | MS.gene44217:intron | 20.0% |
| !!! | TTTTACTATTTTTACCCTTT+TGG | + | chr8.1:31888434-31888453 | MS.gene44217:intron | 20.0% |
| ! | AAGTTTACAACAATAGTGTT+TGG | - | chr8.1:31888209-31888228 | None:intergenic | 25.0% |
| ! | AATTTCAACAACTATAACAG+AGG | - | chr8.1:31888978-31888997 | None:intergenic | 25.0% |
| ! | ATATAGTGAACACTAAAATG+AGG | + | chr8.1:31888810-31888829 | MS.gene44217:intron | 25.0% |
| ! | CATTGTTTATCAATTTAGGA+AGG | + | chr8.1:31886746-31886765 | MS.gene44217:CDS | 25.0% |
| ! | CTAGATCAAAATCAAGAATT+TGG | - | chr8.1:31889613-31889632 | None:intergenic | 25.0% |
| ! | GGAACATTGTTTATCAATTT+AGG | + | chr8.1:31886742-31886761 | MS.gene44217:CDS | 25.0% |
| ! | TAAATATCAATTTAAGCCCA+TGG | - | chr8.1:31888872-31888891 | None:intergenic | 25.0% |
| ! | TATAGTGAACACTAAAATGA+GGG | + | chr8.1:31888811-31888830 | MS.gene44217:intron | 25.0% |
| ! | TGCATAACTACTATATCATT+TGG | - | chr8.1:31887941-31887960 | None:intergenic | 25.0% |
| !! | GATTTAAGTTACAAATATCC+AGG | + | chr8.1:31889010-31889029 | MS.gene44217:intron | 25.0% |
| !! | TAGTAGATATTTTCATTTGC+AGG | + | chr8.1:31888692-31888711 | MS.gene44217:intron | 25.0% |
| !! | TTTGAGAAGGTCATATATTT+TGG | + | chr8.1:31886671-31886690 | MS.gene44217:CDS | 25.0% |
| !!! | AAGCAACAAACATTTTAAAG+TGG | - | chr8.1:31887099-31887118 | None:intergenic | 25.0% |
| !!! | CACAACCTCAATATTTTTAA+GGG | - | chr8.1:31889070-31889089 | None:intergenic | 25.0% |
| AAAATAGTGTTTGGATGAGA+TGG | - | chr8.1:31888154-31888173 | None:intergenic | 30.0% | |
| AAACGTCAAGAAACTAGTAT+TGG | - | chr8.1:31887043-31887062 | None:intergenic | 30.0% | |
| AACTAAAAGTTCATATCAGC+GGG | + | chr8.1:31888535-31888554 | MS.gene44217:CDS | 30.0% | |
| AATGAAAGTCAGTAACCAAA+AGG | - | chr8.1:31888452-31888471 | None:intergenic | 30.0% | |
| ACACATAAAAGTTGTAGAAG+AGG | - | chr8.1:31887890-31887909 | None:intergenic | 30.0% | |
| ACATACATCAATTGAAACCA+GGG | - | chr8.1:31886905-31886924 | None:intergenic | 30.0% | |
| ACATCATTCACAAGCAAATA+TGG | + | chr8.1:31887653-31887672 | MS.gene44217:CDS | 30.0% | |
| ACTCATTAACATTCTATGTC+AGG | + | chr8.1:31889374-31889393 | MS.gene44217:intron | 30.0% | |
| ACTGCATGACGAATAATAAA+AGG | - | chr8.1:31888396-31888415 | None:intergenic | 30.0% | |
| AGTGTTAAAAATCTTAAGGG+AGG | - | chr8.1:31888070-31888089 | None:intergenic | 30.0% | |
| ATAGCATAATATTTGTGCCA+TGG | + | chr8.1:31888852-31888871 | MS.gene44217:intron | 30.0% | |
| ATAGTGAACACTAAAATGAG+GGG | + | chr8.1:31888812-31888831 | MS.gene44217:intron | 30.0% | |
| ATGAAAGTCAGTAACCAAAA+GGG | - | chr8.1:31888451-31888470 | None:intergenic | 30.0% | |
| CAAAGTTTCAGAAAAGAATC+CGG | + | chr8.1:31888508-31888527 | MS.gene44217:CDS | 30.0% | |
| CAACTAAAAGTTCATATCAG+CGG | + | chr8.1:31888534-31888553 | MS.gene44217:CDS | 30.0% | |
| CACATAAAAGTTGTAGAAGA+GGG | - | chr8.1:31887889-31887908 | None:intergenic | 30.0% | |
| CCAGATAGAAAGAATAATAG+AGG | - | chr8.1:31889036-31889055 | None:intergenic | 30.0% | |
| CCTCTATTATTCTTTCTATC+TGG | + | chr8.1:31889033-31889052 | MS.gene44217:intron | 30.0% | |
| CTCATTAACATTCTATGTCA+GGG | + | chr8.1:31889375-31889394 | MS.gene44217:intron | 30.0% | |
| CTGCATGACGAATAATAAAA+GGG | - | chr8.1:31888395-31888414 | None:intergenic | 30.0% | |
| GAGACTTGAAGTTATTGAAA+AGG | + | chr8.1:31887455-31887474 | MS.gene44217:CDS | 30.0% | |
| GCTCGATACAATTTACAATT+TGG | - | chr8.1:31886983-31887002 | None:intergenic | 30.0% | |
| GTGATATTCTTTCATCATCA+AGG | + | chr8.1:31887856-31887875 | MS.gene44217:CDS | 30.0% | |
| GTGTTAAAAATCTTAAGGGA+GGG | - | chr8.1:31888069-31888088 | None:intergenic | 30.0% | |
| TAGCATAATATTTGTGCCAT+GGG | + | chr8.1:31888853-31888872 | MS.gene44217:intron | 30.0% | |
| TGACTTTATTGCATATTCGT+TGG | + | chr8.1:31889144-31889163 | MS.gene44217:CDS | 30.0% | |
| TGTTACTGTATTCTACAATC+TGG | - | chr8.1:31887773-31887792 | None:intergenic | 30.0% | |
| ! | AACTTTTGCTTTCAATGCAT+CGG | - | chr8.1:31888311-31888330 | None:intergenic | 30.0% |
| ! | AATCTTTGAAAATGTTCCAC+AGG | - | chr8.1:31888738-31888757 | None:intergenic | 30.0% |
| ! | ACAACAAACAAAAAAGTGCA+AGG | - | chr8.1:31887973-31887992 | None:intergenic | 30.0% |
| ! | ATCTTTGAAAATGTTCCACA+GGG | - | chr8.1:31888737-31888756 | None:intergenic | 30.0% |
| ! | TAACTTACATATTGGTCTGT+TGG | - | chr8.1:31888774-31888793 | None:intergenic | 30.0% |
| ! | TAGATGCAGTAAAGTTGATT+GGG | + | chr8.1:31886487-31886506 | MS.gene44217:CDS | 30.0% |
| ! | TTAGATGCAGTAAAGTTGAT+TGG | + | chr8.1:31886486-31886505 | MS.gene44217:CDS | 30.0% |
| !! | AACCTCAATATTTTTAAGGG+TGG | - | chr8.1:31889067-31889086 | None:intergenic | 30.0% |
| !! | AATTAGAAGATGCTTTGAGA+AGG | + | chr8.1:31886658-31886677 | MS.gene44217:CDS | 30.0% |
| !! | AGTATCGACAAAATAGTGTT+TGG | - | chr8.1:31888163-31888182 | None:intergenic | 30.0% |
| !! | ATAATAATAGCTTGCTTCTC+TGG | + | chr8.1:31887421-31887440 | MS.gene44217:intron | 30.0% |
| !! | CACAACATCTTAAGTTGATT+GGG | + | chr8.1:31886568-31886587 | MS.gene44217:CDS | 30.0% |
| !! | GCACAACCTCAATATTTTTA+AGG | - | chr8.1:31889071-31889090 | None:intergenic | 30.0% |
| !! | TATGAACTTTTAGTTGACAC+CGG | - | chr8.1:31888530-31888549 | None:intergenic | 30.0% |
| !!! | GTTGCAGAACTTTTATTTTC+CGG | + | chr8.1:31887326-31887345 | MS.gene44217:intron | 30.0% |
| !!! | TATGTGTTTTGAGATCACTT+AGG | + | chr8.1:31887903-31887922 | MS.gene44217:intron | 30.0% |
| !!! | TATTTTGGTCAATAGTTGTC+AGG | + | chr8.1:31886686-31886705 | MS.gene44217:CDS | 30.0% |
| AAATCAAGAATTTGGCCAAG+AGG | - | chr8.1:31889605-31889624 | None:intergenic | 35.0% | |
| AAGAACGACTCTGTATATGA+TGG | + | chr8.1:31887293-31887312 | MS.gene44217:intron | 35.0% | |
| ACAATCTGGTAGTTATCTTC+AGG | - | chr8.1:31887759-31887778 | None:intergenic | 35.0% | |
| ATAAACAATGTTCCATCCCA+TGG | - | chr8.1:31886736-31886755 | None:intergenic | 35.0% | |
| ATAGTGTTTGGATGACCTTT+AGG | - | chr8.1:31888197-31888216 | None:intergenic | 35.0% | |
| ATTAACATTCTATGTCAGGG+AGG | + | chr8.1:31889378-31889397 | MS.gene44217:intron | 35.0% | |
| ATTTGGAGAGATTGCAAATG+TGG | + | chr8.1:31886449-31886468 | MS.gene44217:CDS | 35.0% | |
| CAAAAGAAAGGCAACATTAC+CGG | - | chr8.1:31889232-31889251 | None:intergenic | 35.0% | |
| CACACATATTCACCAAAACA+AGG | - | chr8.1:31887218-31887237 | None:intergenic | 35.0% | |
| CATACATCAATTGAAACCAG+GGG | - | chr8.1:31886904-31886923 | None:intergenic | 35.0% | |
| GACATACATCAATTGAAACC+AGG | - | chr8.1:31886906-31886925 | None:intergenic | 35.0% | |
| GCATCTTCTAATTGTTCTAG+AGG | - | chr8.1:31886651-31886670 | None:intergenic | 35.0% | |
| TACTTGCACATTTGACCTAA+AGG | + | chr8.1:31888179-31888198 | MS.gene44217:intron | 35.0% | |
| TAGAAAGAATAATAGAGGCC+TGG | - | chr8.1:31889031-31889050 | None:intergenic | 35.0% | |
| TAGGAAGATGATGAACATTC+CGG | + | chr8.1:31889210-31889229 | MS.gene44217:CDS | 35.0% | |
| TGCATCTAAGCCTGTTAATT+GGG | - | chr8.1:31886475-31886494 | None:intergenic | 35.0% | |
| TGCCACCCTTAAAAATATTG+AGG | + | chr8.1:31889062-31889081 | MS.gene44217:intron | 35.0% | |
| TGCTATTGATCATTCATGCT+AGG | + | chr8.1:31887066-31887085 | MS.gene44217:intron | 35.0% | |
| TTACATCAGATGTCATGGAT+TGG | - | chr8.1:31888115-31888134 | None:intergenic | 35.0% | |
| ! | GCGCATCTTTTCAACATTTT+AGG | + | chr8.1:31889503-31889522 | MS.gene44217:intron | 35.0% |
| ! | TACCTTTATTTGCTTGCCAT+GGG | + | chr8.1:31886717-31886736 | MS.gene44217:CDS | 35.0% |
| !! | GCACAACATCTTAAGTTGAT+TGG | + | chr8.1:31886567-31886586 | MS.gene44217:CDS | 35.0% |
| !!! | CGGATTCTTTTCTGAAACTT+TGG | - | chr8.1:31888510-31888529 | None:intergenic | 35.0% |
| AACAGTCATTCTGATGCCAA+TGG | + | chr8.1:31887792-31887811 | MS.gene44217:CDS | 40.0% | |
| AAGACATTCTTCTATCCCTG+TGG | + | chr8.1:31888719-31888738 | MS.gene44217:CDS | 40.0% | |
| AGAACATTAATCCCTGGAGA+CGG | + | chr8.1:31888019-31888038 | MS.gene44217:intron | 40.0% | |
| AGTGTTTGGATGAGATGGTT+CGG | - | chr8.1:31888149-31888168 | None:intergenic | 40.0% | |
| ATCCCATGGCAAGCAAATAA+AGG | - | chr8.1:31886722-31886741 | None:intergenic | 40.0% | |
| CCAAAACAAGGAATCTTGCA+TGG | - | chr8.1:31887206-31887225 | None:intergenic | 40.0% | |
| CTGCATCTAAGCCTGTTAAT+TGG | - | chr8.1:31886476-31886495 | None:intergenic | 40.0% | |
| GCAACTAGAACATTAATCCC+TGG | + | chr8.1:31888013-31888032 | MS.gene44217:intron | 40.0% | |
| GCATCTTCATGGGAACAATT+TGG | + | chr8.1:31886432-31886451 | MS.gene44217:CDS | 40.0% | |
| GCTTCGGTGAATGAAAAGTT+TGG | - | chr8.1:31887597-31887616 | None:intergenic | 40.0% | |
| TCCAGTTACATCAGATGTCA+TGG | - | chr8.1:31888120-31888139 | None:intergenic | 40.0% | |
| TCCATGACATCTGATGTAAC+TGG | + | chr8.1:31888116-31888135 | MS.gene44217:intron | 40.0% | |
| TCTTCAGGTGATAACTTCTC+TGG | - | chr8.1:31887744-31887763 | None:intergenic | 40.0% | |
| TGAAAGCTGCAAATACAGCA+AGG | + | chr8.1:31886517-31886536 | MS.gene44217:CDS | 40.0% | |
| TTTATTTGCTTGCCATGGGA+TGG | + | chr8.1:31886721-31886740 | MS.gene44217:CDS | 40.0% | |
| ! | ATTAATGTTCTAGTTGCGCG+AGG | - | chr8.1:31888010-31888029 | None:intergenic | 40.0% |
| ! | CTACCTTTATTTGCTTGCCA+TGG | + | chr8.1:31886716-31886735 | MS.gene44217:CDS | 40.0% |
| ! | GACTCTGTATATGATGGTGT+TGG | + | chr8.1:31887299-31887318 | MS.gene44217:intron | 40.0% |
| ! | GTTGCTATACTTGCTGCATA+AGG | + | chr8.1:31889179-31889198 | MS.gene44217:CDS | 40.0% |
| ! | TTGTCGACTAGAGTAATGAG+AGG | - | chr8.1:31886807-31886826 | None:intergenic | 40.0% |
| !! | CCATGCAAGATTCCTTGTTT+TGG | + | chr8.1:31887203-31887222 | MS.gene44217:intron | 40.0% |
| !! | CTAATTGTTCTAGAGGCTCT+CGG | - | chr8.1:31886644-31886663 | None:intergenic | 40.0% |
| !! | CTTGCTTCTCTGGAATATTC+AGG | + | chr8.1:31887431-31887450 | MS.gene44217:intron | 40.0% |
| !! | TAATTGTTCTAGAGGCTCTC+GGG | - | chr8.1:31886643-31886662 | None:intergenic | 40.0% |
| !! | TGCTCTAAGAGCACTCTTTA+AGG | - | chr8.1:31888359-31888378 | None:intergenic | 40.0% |
| AAGTCATACCATAAACCCCG+CGG | - | chr8.1:31889479-31889498 | None:intergenic | 45.0% | |
| AGAATGACCTTTGCTGCCAT+TGG | - | chr8.1:31887811-31887830 | None:intergenic | 45.0% | |
| ATTGGATGACGAGGACCAAA+AGG | + | chr8.1:31887494-31887513 | MS.gene44217:CDS | 45.0% | |
| CGCTCTTGTACAAGAATGGA+GGG | + | chr8.1:31889443-31889462 | MS.gene44217:CDS | 45.0% | |
| CTTGCGCTCTTGTACAAGAA+TGG | + | chr8.1:31889439-31889458 | MS.gene44217:CDS | 45.0% | |
| CTTGCTAACGAATGCCCTAA+GGG | + | chr8.1:31888226-31888245 | MS.gene44217:intron | 45.0% | |
| CTTGGACTTGTCTATCCTCT+TGG | + | chr8.1:31889587-31889606 | MS.gene44217:intron | 45.0% | |
| GAAACCAGAACATGACCAAG+AGG | + | chr8.1:31887533-31887552 | MS.gene44217:CDS | 45.0% | |
| GAACATTAATCCCTGGAGAC+GGG | + | chr8.1:31888020-31888039 | MS.gene44217:intron | 45.0% | |
| GAGGGATGTCTTGCCTATTA+TGG | - | chr8.1:31888051-31888070 | None:intergenic | 45.0% | |
| GATTCCATGTACTGTGCAGT+TGG | - | chr8.1:31889769-31889788 | None:intergenic | 45.0% | |
| GCAAATGTGGCCCAATTAAC+AGG | + | chr8.1:31886462-31886481 | MS.gene44217:CDS | 45.0% | |
| GGATCAATGTGCGTACACAT+TGG | + | chr8.1:31887476-31887495 | MS.gene44217:CDS | 45.0% | |
| GTTCATATCAGCGGGAAGAT+TGG | + | chr8.1:31888543-31888562 | MS.gene44217:CDS | 45.0% | |
| TTAAGCTATCAACTGACCCC+TGG | + | chr8.1:31886885-31886904 | MS.gene44217:intron | 45.0% | |
| TTGCATACTTCTGCAGAAGC+TGG | - | chr8.1:31889124-31889143 | None:intergenic | 45.0% | |
| ! | ACTTGCTAACGAATGCCCTA+AGG | + | chr8.1:31888225-31888244 | MS.gene44217:intron | 45.0% |
| ! | GAAAGACAGTCTGCACCTTT+TGG | - | chr8.1:31887512-31887531 | None:intergenic | 45.0% |
| ! | GCTATACTTGCTGCATAAGG+AGG | + | chr8.1:31889182-31889201 | MS.gene44217:CDS | 45.0% |
| !! | AATCCTTAAAGAGCGCCCTT+AGG | - | chr8.1:31888244-31888263 | None:intergenic | 45.0% |
| !! | ATCCTTAAAGAGCGCCCTTA+GGG | - | chr8.1:31888243-31888262 | None:intergenic | 45.0% |
| CCATGTACTGTGCAGTTGGA+GGG | - | chr8.1:31889765-31889784 | None:intergenic | 50.0% | |
| GCGCTCTTGTACAAGAATGG+AGG | + | chr8.1:31889442-31889461 | MS.gene44217:CDS | 50.0% | |
| GCTGCATAAGGAGGAAGCTT+AGG | + | chr8.1:31889191-31889210 | MS.gene44217:CDS | 50.0% | |
| GTGTCCTCTTGGTCATGTTC+TGG | - | chr8.1:31887540-31887559 | None:intergenic | 50.0% | |
| TCAGCACTACAGTGTCCTCT+TGG | - | chr8.1:31887551-31887570 | None:intergenic | 50.0% | |
| TCCATGTACTGTGCAGTTGG+AGG | - | chr8.1:31889766-31889785 | None:intergenic | 50.0% | |
| TCTGATGCCAATGGCAGCAA+AGG | + | chr8.1:31887801-31887820 | MS.gene44217:CDS | 50.0% | |
| TGCGTACACATTGGATGACG+AGG | + | chr8.1:31887485-31887504 | MS.gene44217:CDS | 50.0% | |
| !! | GGGCTAGTGTTGATCTTCTC+AGG | - | chr8.1:31889745-31889764 | None:intergenic | 50.0% |
| CCCTCCAACTGCACAGTACA+TGG | + | chr8.1:31889762-31889781 | MS.gene44217:CDS | 55.0% | |
| CTAGAGGCTCTCGGGTTTCA+GGG | - | chr8.1:31886635-31886654 | None:intergenic | 55.0% | |
| GAGACGGGCAGAGCCATAAT+AGG | + | chr8.1:31888035-31888054 | MS.gene44217:intron | 55.0% | |
| GTGCAAATCCGCGGGGTTTA+TGG | + | chr8.1:31889468-31889487 | MS.gene44217:CDS | 55.0% | |
| TCTAGAGGCTCTCGGGTTTC+AGG | - | chr8.1:31886636-31886655 | None:intergenic | 55.0% | |
| ! | ATGCTCGTGCTACTCGAGTC+AGG | + | chr8.1:31886826-31886845 | MS.gene44217:CDS | 55.0% |
| ! | TGCTCGTGCTACTCGAGTCA+GGG | + | chr8.1:31886827-31886846 | MS.gene44217:CDS | 55.0% |
| ! | TGGAGGGAAGTGCAAATCCG+CGG | + | chr8.1:31889459-31889478 | MS.gene44217:CDS | 55.0% |
| !! | TGCCCTAAGGGCGCTCTTTA+AGG | + | chr8.1:31888238-31888257 | MS.gene44217:intron | 55.0% |
| ! | GAGGGAAGTGCAAATCCGCG+GGG | + | chr8.1:31889461-31889480 | MS.gene44217:CDS | 60.0% |
| ! | GGAGGGAAGTGCAAATCCGC+GGG | + | chr8.1:31889460-31889479 | MS.gene44217:CDS | 60.0% |
| ! | TATGGCTCTGCCCGTCTCCA+GGG | - | chr8.1:31888033-31888052 | None:intergenic | 60.0% |
| ! | TTATGGCTCTGCCCGTCTCC+AGG | - | chr8.1:31888034-31888053 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 31886429 | 31889792 | 31886429 | ID=MS.gene44217 |
| chr8.1 | mRNA | 31886429 | 31889792 | 31886429 | ID=MS.gene44217.t1;Parent=MS.gene44217 |
| chr8.1 | exon | 31886429 | 31886848 | 31886429 | ID=MS.gene44217.t1.exon1;Parent=MS.gene44217.t1 |
| chr8.1 | CDS | 31886429 | 31886848 | 31886429 | ID=cds.MS.gene44217.t1;Parent=MS.gene44217.t1 |
| chr8.1 | exon | 31887453 | 31887877 | 31887453 | ID=MS.gene44217.t1.exon2;Parent=MS.gene44217.t1 |
| chr8.1 | CDS | 31887453 | 31887877 | 31887453 | ID=cds.MS.gene44217.t1;Parent=MS.gene44217.t1 |
| chr8.1 | exon | 31888505 | 31888605 | 31888505 | ID=MS.gene44217.t1.exon3;Parent=MS.gene44217.t1 |
| chr8.1 | CDS | 31888505 | 31888605 | 31888505 | ID=cds.MS.gene44217.t1;Parent=MS.gene44217.t1 |
| chr8.1 | exon | 31888714 | 31888785 | 31888714 | ID=MS.gene44217.t1.exon4;Parent=MS.gene44217.t1 |
| chr8.1 | CDS | 31888714 | 31888785 | 31888714 | ID=cds.MS.gene44217.t1;Parent=MS.gene44217.t1 |
| chr8.1 | exon | 31889125 | 31889231 | 31889125 | ID=MS.gene44217.t1.exon5;Parent=MS.gene44217.t1 |
| chr8.1 | CDS | 31889125 | 31889231 | 31889125 | ID=cds.MS.gene44217.t1;Parent=MS.gene44217.t1 |
| chr8.1 | exon | 31889396 | 31889489 | 31889396 | ID=MS.gene44217.t1.exon6;Parent=MS.gene44217.t1 |
| chr8.1 | CDS | 31889396 | 31889489 | 31889396 | ID=cds.MS.gene44217.t1;Parent=MS.gene44217.t1 |
| chr8.1 | exon | 31889737 | 31889792 | 31889737 | ID=MS.gene44217.t1.exon7;Parent=MS.gene44217.t1 |
| chr8.1 | CDS | 31889737 | 31889792 | 31889737 | ID=cds.MS.gene44217.t1;Parent=MS.gene44217.t1 |
| Gene Sequence |
| Protein sequence |
