Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44541.t1 | XP_003615974.1 | 93.7 | 839 | 26 | 2 | 1 | 812 | 155 | 993 | 0.00E+00 | 1474.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44541.t1 | O24303 | 86.2 | 840 | 88 | 3 | 1 | 812 | 157 | 996 | 0.0e+00 | 1357.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44541.t1 | G7KFK1 | 93.7 | 839 | 26 | 2 | 1 | 812 | 155 | 993 | 0.0e+00 | 1474.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049151 | MS.gene44541 | 0.80417 | 2.46E-49 | -1.69E-46 |
| MS.gene049297 | MS.gene44541 | 0.857152 | 1.98E-62 | -1.69E-46 |
| MS.gene049382 | MS.gene44541 | 0.817961 | 2.51E-52 | -1.69E-46 |
| MS.gene050226 | MS.gene44541 | 0.849463 | 3.18E-60 | -1.69E-46 |
| MS.gene050227 | MS.gene44541 | 0.8416 | 4.31E-58 | -1.69E-46 |
| MS.gene050228 | MS.gene44541 | 0.847239 | 1.31E-59 | -1.69E-46 |
| MS.gene050558 | MS.gene44541 | 0.808874 | 2.50E-50 | -1.69E-46 |
| MS.gene050623 | MS.gene44541 | -0.825995 | 3.46E-54 | -1.69E-46 |
| MS.gene050642 | MS.gene44541 | 0.828158 | 1.05E-54 | -1.69E-46 |
| MS.gene051662 | MS.gene44541 | 0.84235 | 2.73E-58 | -1.69E-46 |
| MS.gene051663 | MS.gene44541 | 0.864257 | 1.38E-64 | -1.69E-46 |
| MS.gene052286 | MS.gene44541 | 0.802445 | 5.59E-49 | -1.69E-46 |
| MS.gene052302 | MS.gene44541 | 0.801022 | 1.10E-48 | -1.69E-46 |
| MS.gene052376 | MS.gene44541 | 0.802156 | 6.41E-49 | -1.69E-46 |
| MS.gene052600 | MS.gene44541 | 0.856435 | 3.22E-62 | -1.69E-46 |
| MS.gene052856 | MS.gene44541 | 0.805775 | 1.13E-49 | -1.69E-46 |
| MS.gene053630 | MS.gene44541 | 0.815616 | 8.44E-52 | -1.69E-46 |
| MS.gene053836 | MS.gene44541 | 0.808793 | 2.60E-50 | -1.69E-46 |
| MS.gene054942 | MS.gene44541 | 0.864826 | 9.19E-65 | -1.69E-46 |
| MS.gene056069 | MS.gene44541 | -0.802154 | 6.42E-49 | -1.69E-46 |
| MS.gene056552 | MS.gene44541 | 0.822963 | 1.79E-53 | -1.69E-46 |
| MS.gene056875 | MS.gene44541 | 0.818486 | 1.91E-52 | -1.69E-46 |
| MS.gene057754 | MS.gene44541 | 0.81509 | 1.10E-51 | -1.69E-46 |
| MS.gene057869 | MS.gene44541 | 0.813673 | 2.27E-51 | -1.69E-46 |
| MS.gene05811 | MS.gene44541 | 0.806274 | 8.91E-50 | -1.69E-46 |
| MS.gene058749 | MS.gene44541 | 0.808955 | 2.40E-50 | -1.69E-46 |
| MS.gene058833 | MS.gene44541 | 0.865582 | 5.32E-65 | -1.69E-46 |
| MS.gene058982 | MS.gene44541 | 0.806437 | 8.23E-50 | -1.69E-46 |
| MS.gene060619 | MS.gene44541 | 0.829553 | 4.83E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 38067 | gene | 2067 | 9410 | 2067 | ID=MS.gene44541 |
| 38067 | mRNA | 2067 | 9410 | 2067 | ID=MS.gene44541.t1;Parent=MS.gene44541 |
| 38067 | exon | 2067 | 2126 | 2067 | ID=MS.gene44541.t1.exon1;Parent=MS.gene44541.t1 |
| 38067 | CDS | 2067 | 2126 | 2067 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 2462 | 2585 | 2462 | ID=MS.gene44541.t1.exon2;Parent=MS.gene44541.t1 |
| 38067 | CDS | 2462 | 2585 | 2462 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 2700 | 2768 | 2700 | ID=MS.gene44541.t1.exon3;Parent=MS.gene44541.t1 |
| 38067 | CDS | 2700 | 2768 | 2700 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 2888 | 2986 | 2888 | ID=MS.gene44541.t1.exon4;Parent=MS.gene44541.t1 |
| 38067 | CDS | 2888 | 2986 | 2888 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 3283 | 3349 | 3283 | ID=MS.gene44541.t1.exon5;Parent=MS.gene44541.t1 |
| 38067 | CDS | 3283 | 3349 | 3283 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 3740 | 3804 | 3740 | ID=MS.gene44541.t1.exon6;Parent=MS.gene44541.t1 |
| 38067 | CDS | 3740 | 3804 | 3740 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 3942 | 4036 | 3942 | ID=MS.gene44541.t1.exon7;Parent=MS.gene44541.t1 |
| 38067 | CDS | 3942 | 4036 | 3942 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 4762 | 4889 | 4762 | ID=MS.gene44541.t1.exon8;Parent=MS.gene44541.t1 |
| 38067 | CDS | 4762 | 4889 | 4762 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 4996 | 5096 | 4996 | ID=MS.gene44541.t1.exon9;Parent=MS.gene44541.t1 |
| 38067 | CDS | 4996 | 5096 | 4996 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 5854 | 5925 | 5854 | ID=MS.gene44541.t1.exon10;Parent=MS.gene44541.t1 |
| 38067 | CDS | 5854 | 5925 | 5854 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 5963 | 6071 | 5963 | ID=MS.gene44541.t1.exon11;Parent=MS.gene44541.t1 |
| 38067 | CDS | 5963 | 6071 | 5963 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 6822 | 6976 | 6822 | ID=MS.gene44541.t1.exon12;Parent=MS.gene44541.t1 |
| 38067 | CDS | 6822 | 6976 | 6822 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 7885 | 8010 | 7885 | ID=MS.gene44541.t1.exon13;Parent=MS.gene44541.t1 |
| 38067 | CDS | 7885 | 8010 | 7885 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 8101 | 8247 | 8101 | ID=MS.gene44541.t1.exon14;Parent=MS.gene44541.t1 |
| 38067 | CDS | 8101 | 8247 | 8101 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 8294 | 9076 | 8294 | ID=MS.gene44541.t1.exon15;Parent=MS.gene44541.t1 |
| 38067 | CDS | 8294 | 9076 | 8294 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| 38067 | exon | 9171 | 9410 | 9171 | ID=MS.gene44541.t1.exon16;Parent=MS.gene44541.t1 |
| 38067 | CDS | 9171 | 9410 | 9171 | ID=cds.MS.gene44541.t1;Parent=MS.gene44541.t1 |
| Gene Sequence |
| Protein sequence |
