Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44924.t1 | XP_003629590.2 | 98.4 | 253 | 3 | 1 | 1 | 253 | 1 | 252 | 2.20E-125 | 458.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44924.t1 | Q2KIJ5 | 28.2 | 188 | 119 | 4 | 9 | 188 | 32 | 211 | 9.0e-11 | 68.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44924.t1 | A0A396GMH5 | 98.4 | 253 | 3 | 1 | 1 | 253 | 1 | 252 | 1.6e-125 | 458.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene44924 | 0.809189 | 2.14E-50 | -1.69E-46 |
| MS.gene049907 | MS.gene44924 | 0.817878 | 2.62E-52 | -1.69E-46 |
| MS.gene050499 | MS.gene44924 | 0.810806 | 9.60E-51 | -1.69E-46 |
| MS.gene050520 | MS.gene44924 | 0.837217 | 5.92E-57 | -1.69E-46 |
| MS.gene050871 | MS.gene44924 | 0.804429 | 2.17E-49 | -1.69E-46 |
| MS.gene052966 | MS.gene44924 | 0.804181 | 2.44E-49 | -1.69E-46 |
| MS.gene053505 | MS.gene44924 | 0.801643 | 8.17E-49 | -1.69E-46 |
| MS.gene053574 | MS.gene44924 | 0.80469 | 1.91E-49 | -1.69E-46 |
| MS.gene053626 | MS.gene44924 | 0.817884 | 2.62E-52 | -1.69E-46 |
| MS.gene053813 | MS.gene44924 | 0.801867 | 7.35E-49 | -1.69E-46 |
| MS.gene054003 | MS.gene44924 | 0.802883 | 4.54E-49 | -1.69E-46 |
| MS.gene054595 | MS.gene44924 | 0.807071 | 6.04E-50 | -1.69E-46 |
| MS.gene05494 | MS.gene44924 | 0.800448 | 1.43E-48 | -1.69E-46 |
| MS.gene055224 | MS.gene44924 | 0.815353 | 9.66E-52 | -1.69E-46 |
| MS.gene05601 | MS.gene44924 | 0.803702 | 3.07E-49 | -1.69E-46 |
| MS.gene056166 | MS.gene44924 | 0.80915 | 2.18E-50 | -1.69E-46 |
| MS.gene05787 | MS.gene44924 | 0.833172 | 6.21E-56 | -1.69E-46 |
| MS.gene05837 | MS.gene44924 | 0.803585 | 3.25E-49 | -1.69E-46 |
| MS.gene059305 | MS.gene44924 | 0.803495 | 3.39E-49 | -1.69E-46 |
| MS.gene059367 | MS.gene44924 | 0.807941 | 3.95E-50 | -1.69E-46 |
| MS.gene059680 | MS.gene44924 | 0.856983 | 2.22E-62 | -1.69E-46 |
| MS.gene059711 | MS.gene44924 | 0.826558 | 2.54E-54 | -1.69E-46 |
| MS.gene060778 | MS.gene44924 | 0.805408 | 1.35E-49 | -1.69E-46 |
| MS.gene060837 | MS.gene44924 | 0.821593 | 3.72E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44924.t1 | MTR_8g079810 | 98.400 | 250 | 3 | 1 | 4 | 253 | 1 | 249 | 0.0 | 504 |
| MS.gene44924.t1 | MTR_2g022600 | 25.967 | 181 | 123 | 3 | 14 | 191 | 40 | 212 | 2.18e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene44924.t1 | AT3G50560 | 67.537 | 268 | 71 | 3 | 1 | 252 | 2 | 269 | 5.26e-125 | 356 |
Find 69 sgRNAs with CRISPR-Local
Find 122 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTTGCTCTGCTTCTTTAAA+TGG | 0.216932 | 8.1:+28016246 | MS.gene44924:CDS |
| CAAGGGAAGTTTGGAAAGTT+TGG | 0.239457 | 8.1:-28016007 | None:intergenic |
| GCTTCTTTAAATGGCATTGC+AGG | 0.309696 | 8.1:+28016255 | MS.gene44924:CDS |
| ATGAACGAACATCCATTTCT+TGG | 0.333809 | 8.1:-28017247 | None:intergenic |
| CGCCTTCAACTGTGCTCAAC+AGG | 0.354644 | 8.1:+28016046 | MS.gene44924:CDS |
| ATTAGGACCGACGCCAACTA+TGG | 0.357925 | 8.1:-28015484 | None:intergenic |
| ATGAAACGGCAAGGGAAGTT+TGG | 0.367798 | 8.1:-28016016 | None:intergenic |
| TTTCCTCTTTCAACCATTCC+CGG | 0.371758 | 8.1:-28016204 | None:intergenic |
| TTTCTTGGGTCCATGCATTC+CGG | 0.377690 | 8.1:-28017232 | None:intergenic |
| TCCCTTGCCGTTTCATCCCT+CGG | 0.388630 | 8.1:+28016023 | MS.gene44924:CDS |
| ATGCATTGGCTCAAACATAT+TGG | 0.404371 | 8.1:+28017192 | MS.gene44924:CDS |
| ATGTTGAAAAGGAGTTGGTT+TGG | 0.421399 | 8.1:-28015976 | None:intergenic |
| TATGTTTGAGCCAATGCATC+CGG | 0.433151 | 8.1:-28017188 | None:intergenic |
| TGGATTGAGAGATGTTGAAA+AGG | 0.438146 | 8.1:-28015987 | None:intergenic |
| AGTGTAAAAGAAGCATTTGA+AGG | 0.449118 | 8.1:+28015888 | MS.gene44924:CDS |
| GCCATCCTCGCCCGTGACTT+AGG | 0.454853 | 8.1:+28015555 | MS.gene44924:CDS |
| TGAACGAACATCCATTTCTT+GGG | 0.457910 | 8.1:-28017246 | None:intergenic |
| GGTAATATTGCAGCCATAGT+TGG | 0.459882 | 8.1:+28015471 | MS.gene44924:CDS |
| GAATGCATGGACCCAAGAAA+TGG | 0.461502 | 8.1:+28017235 | MS.gene44924:CDS |
| AAAGGAACAATTCTATTCAC+TGG | 0.475162 | 8.1:+28016225 | MS.gene44924:CDS |
| TGAAATAGCAAGGGAAGAAA+AGG | 0.479373 | 8.1:+28015824 | MS.gene44924:CDS |
| TACCTGTTGAGCACAGTTGA+AGG | 0.480690 | 8.1:-28016048 | None:intergenic |
| GCTCGCAAGTTTGCTCATGA+AGG | 0.481049 | 8.1:+28015522 | MS.gene44924:CDS |
| GCGATGGAGAGGCCGAGATT+AGG | 0.485603 | 8.1:-28015501 | None:intergenic |
| GAGAGATGTTGAAAAGGAGT+TGG | 0.485715 | 8.1:-28015981 | None:intergenic |
| AAGTGGTGGTGAGAGTGTTA+TGG | 0.486623 | 8.1:+28017163 | MS.gene44924:CDS |
| ACGGCGTCGTCGCGAGGAGG+AGG | 0.489648 | 8.1:+28017140 | MS.gene44924:CDS |
| TCGTCGCGAGGAGGAGGAAG+TGG | 0.492026 | 8.1:+28017146 | MS.gene44924:CDS |
| ATTTATGAATTAGGTGCTGC+CGG | 0.492617 | 8.1:+28016185 | MS.gene44924:intron |
| ACCTAAGTCACGGGCGAGGA+TGG | 0.502538 | 8.1:-28015556 | None:intergenic |
| TTTGAAGGTGTACTTTCACT+TGG | 0.508660 | 8.1:+28015903 | MS.gene44924:CDS |
| TGTTATGGACCCGGATGCAT+TGG | 0.516123 | 8.1:+28017178 | MS.gene44924:CDS |
| GTAGCTCATATTATTATCGA+TGG | 0.524070 | 8.1:+28016473 | MS.gene44924:CDS |
| CAAACGAAACGCACCTTGGT+GGG | 0.529770 | 8.1:-28016505 | None:intergenic |
| ACAAACGAAACGCACCTTGG+TGG | 0.530352 | 8.1:-28016506 | None:intergenic |
| ATGAGCAAACTTGCGAGCGA+TGG | 0.536721 | 8.1:-28015517 | None:intergenic |
| GGCATATACACGTTCAAGAC+CGG | 0.538407 | 8.1:+28017213 | MS.gene44924:CDS |
| TACATTCATACCTAAGTCAC+GGG | 0.542393 | 8.1:-28015565 | None:intergenic |
| GAAGGCGCCGAGGGATGAAA+CGG | 0.542643 | 8.1:-28016030 | None:intergenic |
| GAATTAGGTGCTGCCGGGAA+TGG | 0.547598 | 8.1:+28016191 | MS.gene44924:intron |
| GGAATGGTTGAAAGAGGAAA+AGG | 0.550184 | 8.1:+28016207 | MS.gene44924:CDS |
| CGCCGAGGGATGAAACGGCA+AGG | 0.552431 | 8.1:-28016025 | None:intergenic |
| GCTAGAGAATTTCAGCCTCA+AGG | 0.567416 | 8.1:+28016443 | MS.gene44924:CDS |
| ACGTTCAAGACCGGAATGCA+TGG | 0.567516 | 8.1:+28017222 | MS.gene44924:CDS |
| TTTATGAATTAGGTGCTGCC+GGG | 0.568009 | 8.1:+28016186 | MS.gene44924:intron |
| GGAGTTGGTTTGGATTGAAG+AGG | 0.572556 | 8.1:-28015966 | None:intergenic |
| TATGGGGTGCAGAGGATCAT+CGG | 0.575217 | 8.1:+28017109 | MS.gene44924:intron |
| GTTGGCGTCGGTCCTAATCT+CGG | 0.576317 | 8.1:+28015489 | MS.gene44924:CDS |
| GCCGAGGGATGAAACGGCAA+GGG | 0.581874 | 8.1:-28016024 | None:intergenic |
| AGCACAGTTGAAGGCGCCGA+GGG | 0.582313 | 8.1:-28016039 | None:intergenic |
| ATGTTTGAGCCAATGCATCC+GGG | 0.591141 | 8.1:-28017187 | None:intergenic |
| CAAACTTGCGAGCGATGGAG+AGG | 0.595122 | 8.1:-28015512 | None:intergenic |
| ATACATTCATACCTAAGTCA+CGG | 0.596054 | 8.1:-28015566 | None:intergenic |
| CTGCCGGGAATGGTTGAAAG+AGG | 0.597430 | 8.1:+28016201 | MS.gene44924:CDS |
| GTCACGGGCGAGGATGGCAA+CGG | 0.598987 | 8.1:-28015550 | None:intergenic |
| ACAACAACGGCGTCGTCGCG+AGG | 0.605360 | 8.1:+28017134 | MS.gene44924:CDS |
| TCGCGAGGAGGAGGAAGTGG+TGG | 0.617268 | 8.1:+28017149 | MS.gene44924:CDS |
| AGAAACATGGCAAGCTCACG+AGG | 0.620180 | 8.1:+28015450 | MS.gene44924:CDS |
| TGGTGAGAGTGTTATGGACC+CGG | 0.622308 | 8.1:+28017169 | MS.gene44924:CDS |
| GATTTGCAGATGAAATAGCA+AGG | 0.631251 | 8.1:+28015814 | MS.gene44924:CDS |
| ATTTGCAGATGAAATAGCAA+GGG | 0.637104 | 8.1:+28015815 | MS.gene44924:CDS |
| TCATACCTAAGTCACGGGCG+AGG | 0.643162 | 8.1:-28015560 | None:intergenic |
| TGAGCTACATGCACTCCTTG+AGG | 0.648657 | 8.1:-28016458 | None:intergenic |
| GAGCACAGTTGAAGGCGCCG+AGG | 0.649759 | 8.1:-28016040 | None:intergenic |
| ATTGCAGCCATAGTTGGCGT+CGG | 0.656355 | 8.1:+28015477 | MS.gene44924:CDS |
| AGGATCATCGGCAACAACAA+CGG | 0.658292 | 8.1:+28017121 | MS.gene44924:CDS |
| ACAACGGCGTCGTCGCGAGG+AGG | 0.679636 | 8.1:+28017137 | MS.gene44924:CDS |
| GAGGTGCACGATGAGAAACA+TGG | 0.687039 | 8.1:+28015437 | None:intergenic |
| GTGTGCATGAGACAGGCTGT+GGG | 0.704247 | 8.1:+28016387 | MS.gene44924:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAGGAAATATATATATAT+TGG | - | chr8.1:28016622-28016641 | None:intergenic | 10.0% |
| !! | TAAATAATGATTTATGAATT+AGG | + | chr8.1:28016176-28016195 | MS.gene44924:intron | 10.0% |
| !! | ACATAGATGTATATTAGTTA+TGG | - | chr8.1:28016654-28016673 | None:intergenic | 20.0% |
| !! | TTATGTTTGATTGAATTGAA+GGG | + | chr8.1:28015732-28015751 | MS.gene44924:intron | 20.0% |
| !! | TTTATGTTTGATTGAATTGA+AGG | + | chr8.1:28015731-28015750 | MS.gene44924:intron | 20.0% |
| !!! | ATTATTATCGATGGTTTTAT+TGG | + | chr8.1:28016482-28016501 | MS.gene44924:CDS | 20.0% |
| !!! | TAAATGACTTGTTATGTTAT+GGG | + | chr8.1:28017092-28017111 | MS.gene44924:intron | 20.0% |
| !!! | TAATCCCATTTTAGAAATTT+GGG | - | chr8.1:28016989-28017008 | None:intergenic | 20.0% |
| !!! | TGATTTTCTTAAATTATCAG+CGG | + | chr8.1:28016751-28016770 | MS.gene44924:intron | 20.0% |
| !!! | TTCATCTATAACATACTTTT+TGG | + | chr8.1:28015605-28015624 | MS.gene44924:intron | 20.0% |
| ! | ATTATAAATTGAACTGATGC+AGG | + | chr8.1:28015780-28015799 | MS.gene44924:intron | 25.0% |
| ! | CTACATACACATAAGATTTA+AGG | + | chr8.1:28016841-28016860 | MS.gene44924:intron | 25.0% |
| ! | TAACAAGTCATTTACACAAT+AGG | - | chr8.1:28017086-28017105 | None:intergenic | 25.0% |
| ! | TAGATGTATATTAGTTATGG+TGG | - | chr8.1:28016651-28016670 | None:intergenic | 25.0% |
| ! | TTATAAATTGAACTGATGCA+GGG | + | chr8.1:28015781-28015800 | MS.gene44924:intron | 25.0% |
| ! | TTCAGTGTAATTATATGTGT+CGG | - | chr8.1:28016726-28016745 | None:intergenic | 25.0% |
| !! | ACAATCATCATTTTACATGT+AGG | + | chr8.1:28017034-28017053 | MS.gene44924:intron | 25.0% |
| !! | AGATAAAACGTTCAATTTTC+AGG | + | chr8.1:28016926-28016945 | MS.gene44924:intron | 25.0% |
| !! | TCTATCCCAAATTTCTAAAA+TGG | + | chr8.1:28016981-28017000 | MS.gene44924:intron | 25.0% |
| !!! | AAATGACTTGTTATGTTATG+GGG | + | chr8.1:28017093-28017112 | MS.gene44924:intron | 25.0% |
| !!! | CTATCCCAAATTTCTAAAAT+GGG | + | chr8.1:28016982-28017001 | MS.gene44924:intron | 25.0% |
| !!! | GTAAATGACTTGTTATGTTA+TGG | + | chr8.1:28017091-28017110 | MS.gene44924:intron | 25.0% |
| !!! | GTAATCCCATTTTAGAAATT+TGG | - | chr8.1:28016990-28017009 | None:intergenic | 25.0% |
| AAAGGAACAATTCTATTCAC+TGG | + | chr8.1:28016225-28016244 | MS.gene44924:CDS | 30.0% | |
| AGATCTATGAAGCACAAATA+CGG | - | chr8.1:28016823-28016842 | None:intergenic | 30.0% | |
| ATACATTCATACCTAAGTCA+CGG | - | chr8.1:28015569-28015588 | None:intergenic | 30.0% | |
| ATATTGTCAAGAGTTCTACA+TGG | + | chr8.1:28016899-28016918 | MS.gene44924:intron | 30.0% | |
| ATGAATGAGAGGAAAAGAAA+AGG | - | chr8.1:28016556-28016575 | None:intergenic | 30.0% | |
| ATTTGCAGATGAAATAGCAA+GGG | + | chr8.1:28015815-28015834 | MS.gene44924:CDS | 30.0% | |
| GACAGAAACATTTGATATGT+TGG | - | chr8.1:28016094-28016113 | None:intergenic | 30.0% | |
| GGAATGAAATATATGCAAGT+AGG | - | chr8.1:28016601-28016620 | None:intergenic | 30.0% | |
| GTAGCTCATATTATTATCGA+TGG | + | chr8.1:28016473-28016492 | MS.gene44924:CDS | 30.0% | |
| TCCTCTCATTCATATTCATT+GGG | + | chr8.1:28016563-28016582 | MS.gene44924:intron | 30.0% | |
| TGAATGAGAGGAAAAGAAAA+GGG | - | chr8.1:28016555-28016574 | None:intergenic | 30.0% | |
| TTCCTCTCATTCATATTCAT+TGG | + | chr8.1:28016562-28016581 | MS.gene44924:intron | 30.0% | |
| ! | AGTTATGGTGGAATTAGAAT+AGG | - | chr8.1:28016639-28016658 | None:intergenic | 30.0% |
| !! | AGTGTAAAAGAAGCATTTGA+AGG | + | chr8.1:28015888-28015907 | MS.gene44924:CDS | 30.0% |
| !! | TTTACATGTAGGTTTTGTGA+CGG | + | chr8.1:28017045-28017064 | MS.gene44924:intron | 30.0% |
| ACATCTATGTAGACATTCCT+CGG | + | chr8.1:28016664-28016683 | MS.gene44924:intron | 35.0% | |
| AGAAAAGGGAAAGAAGATCT+AGG | - | chr8.1:28016541-28016560 | None:intergenic | 35.0% | |
| ATGAACGAACATCCATTTCT+TGG | - | chr8.1:28017250-28017269 | None:intergenic | 35.0% | |
| ATGAAGCACAAATACGGATT+TGG | - | chr8.1:28016817-28016836 | None:intergenic | 35.0% | |
| GATTTGCAGATGAAATAGCA+AGG | + | chr8.1:28015814-28015833 | MS.gene44924:CDS | 35.0% | |
| TACATTCATACCTAAGTCAC+GGG | - | chr8.1:28015568-28015587 | None:intergenic | 35.0% | |
| TCCCAATGAATATGAATGAG+AGG | - | chr8.1:28016567-28016586 | None:intergenic | 35.0% | |
| TCTTAAATTATCAGCGGTGT+CGG | + | chr8.1:28016757-28016776 | MS.gene44924:intron | 35.0% | |
| TGAAATAGCAAGGGAAGAAA+AGG | + | chr8.1:28015824-28015843 | MS.gene44924:CDS | 35.0% | |
| TGAACGAACATCCATTTCTT+GGG | - | chr8.1:28017249-28017268 | None:intergenic | 35.0% | |
| TGGATTGAGAGATGTTGAAA+AGG | - | chr8.1:28015990-28016009 | None:intergenic | 35.0% | |
| ! | ATGTTGAAAAGGAGTTGGTT+TGG | - | chr8.1:28015979-28015998 | None:intergenic | 35.0% |
| ! | ATTTATGAATTAGGTGCTGC+CGG | + | chr8.1:28016185-28016204 | MS.gene44924:intron | 35.0% |
| ! | TTTGAAGGTGTACTTTCACT+TGG | + | chr8.1:28015903-28015922 | MS.gene44924:CDS | 35.0% |
| !! | ATGCATTGGCTCAAACATAT+TGG | + | chr8.1:28017192-28017211 | MS.gene44924:CDS | 35.0% |
| AGAGAACATTGCATTGCATG+TGG | + | chr8.1:28016363-28016382 | MS.gene44924:intron | 40.0% | |
| CAAGGGAAGTTTGGAAAGTT+TGG | - | chr8.1:28016010-28016029 | None:intergenic | 40.0% | |
| CACAAATACGGATTTGGACA+CGG | - | chr8.1:28016811-28016830 | None:intergenic | 40.0% | |
| GAGAGATGTTGAAAAGGAGT+TGG | - | chr8.1:28015984-28016003 | None:intergenic | 40.0% | |
| GCTTCTTTAAATGGCATTGC+AGG | + | chr8.1:28016255-28016274 | MS.gene44924:CDS | 40.0% | |
| GGAATGGTTGAAAGAGGAAA+AGG | + | chr8.1:28016207-28016226 | MS.gene44924:CDS | 40.0% | |
| GGTAATATTGCAGCCATAGT+TGG | + | chr8.1:28015471-28015490 | MS.gene44924:CDS | 40.0% | |
| GGTTGCTCTGCTTCTTTAAA+TGG | + | chr8.1:28016246-28016265 | MS.gene44924:CDS | 40.0% | |
| TAAACAAACGAAACGCACCT+TGG | - | chr8.1:28016512-28016531 | None:intergenic | 40.0% | |
| TAAATTGAACTGATGCAGGG+AGG | + | chr8.1:28015784-28015803 | MS.gene44924:intron | 40.0% | |
| TACGTAAACTAGTCGCATAG+AGG | - | chr8.1:28017012-28017031 | None:intergenic | 40.0% | |
| TATGTTTGAGCCAATGCATC+CGG | - | chr8.1:28017191-28017210 | None:intergenic | 40.0% | |
| TTTCCTCTTTCAACCATTCC+CGG | - | chr8.1:28016207-28016226 | None:intergenic | 40.0% | |
| ! | TTTATGAATTAGGTGCTGCC+GGG | + | chr8.1:28016186-28016205 | MS.gene44924:intron | 40.0% |
| !! | AGGTTTTGTGACGGAGAATT+AGG | + | chr8.1:28017054-28017073 | MS.gene44924:intron | 40.0% |
| !! | TCTATGCGACTAGTTTACGT+AGG | + | chr8.1:28017011-28017030 | MS.gene44924:intron | 40.0% |
| ACGGATTTGGACACGGATAT+CGG | - | chr8.1:28016804-28016823 | None:intergenic | 45.0% | |
| AGGATCATCGGCAACAACAA+CGG | + | chr8.1:28017121-28017140 | MS.gene44924:CDS | 45.0% | |
| ATCAAGACACGTCTAATCCG+AGG | - | chr8.1:28016684-28016703 | None:intergenic | 45.0% | |
| ATGAAACGGCAAGGGAAGTT+TGG | - | chr8.1:28016019-28016038 | None:intergenic | 45.0% | |
| ATGTTTGAGCCAATGCATCC+GGG | - | chr8.1:28017190-28017209 | None:intergenic | 45.0% | |
| GAATGCATGGACCCAAGAAA+TGG | + | chr8.1:28017235-28017254 | MS.gene44924:CDS | 45.0% | |
| GCTAGAGAATTTCAGCCTCA+AGG | + | chr8.1:28016443-28016462 | MS.gene44924:CDS | 45.0% | |
| GGCATATACACGTTCAAGAC+CGG | + | chr8.1:28017213-28017232 | MS.gene44924:CDS | 45.0% | |
| TACCTGTTGAGCACAGTTGA+AGG | - | chr8.1:28016051-28016070 | None:intergenic | 45.0% | |
| TGTTATGTTATGGGGTGCAG+AGG | + | chr8.1:28017101-28017120 | MS.gene44924:intron | 45.0% | |
| TTTCTTGGGTCCATGCATTC+CGG | - | chr8.1:28017235-28017254 | None:intergenic | 45.0% | |
| !! | AAGTGGTGGTGAGAGTGTTA+TGG | + | chr8.1:28017163-28017182 | MS.gene44924:CDS | 45.0% |
| !! | GGAGTTGGTTTGGATTGAAG+AGG | - | chr8.1:28015969-28015988 | None:intergenic | 45.0% |
| !!! | ATGGTTTTATTGGCCCACCA+AGG | + | chr8.1:28016492-28016511 | MS.gene44924:CDS | 45.0% |
| ACAAACGAAACGCACCTTGG+TGG | - | chr8.1:28016509-28016528 | None:intergenic | 50.0% | |
| ACGTTCAAGACCGGAATGCA+TGG | + | chr8.1:28017222-28017241 | MS.gene44924:CDS | 50.0% | |
| AGAAACATGGCAAGCTCACG+AGG | + | chr8.1:28015450-28015469 | MS.gene44924:CDS | 50.0% | |
| ATGAGCAAACTTGCGAGCGA+TGG | - | chr8.1:28015520-28015539 | None:intergenic | 50.0% | |
| ATGTGGTGTGTGCATGAGAC+AGG | + | chr8.1:28016380-28016399 | MS.gene44924:intron | 50.0% | |
| ATTAGGACCGACGCCAACTA+TGG | - | chr8.1:28015487-28015506 | None:intergenic | 50.0% | |
| ATTGCAGCCATAGTTGGCGT+CGG | + | chr8.1:28015477-28015496 | MS.gene44924:CDS | 50.0% | |
| CAAACGAAACGCACCTTGGT+GGG | - | chr8.1:28016508-28016527 | None:intergenic | 50.0% | |
| CACGGATATCGGACACGATA+TGG | - | chr8.1:28016793-28016812 | None:intergenic | 50.0% | |
| TATGGGGTGCAGAGGATCAT+CGG | + | chr8.1:28017109-28017128 | MS.gene44924:intron | 50.0% | |
| TGAGCTACATGCACTCCTTG+AGG | - | chr8.1:28016461-28016480 | None:intergenic | 50.0% | |
| TGTCGGTATCGTGTCAGTGT+CGG | - | chr8.1:28016709-28016728 | None:intergenic | 50.0% | |
| TGTTATGGACCCGGATGCAT+TGG | + | chr8.1:28017178-28017197 | MS.gene44924:CDS | 50.0% | |
| ! | GCTCGCAAGTTTGCTCATGA+AGG | + | chr8.1:28015522-28015541 | MS.gene44924:CDS | 50.0% |
| !! | TGGTGAGAGTGTTATGGACC+CGG | + | chr8.1:28017169-28017188 | MS.gene44924:CDS | 50.0% |
| CAAACTTGCGAGCGATGGAG+AGG | - | chr8.1:28015515-28015534 | None:intergenic | 55.0% | |
| CGCCTTCAACTGTGCTCAAC+AGG | + | chr8.1:28016046-28016065 | MS.gene44924:CDS | 55.0% | |
| CTGCCGGGAATGGTTGAAAG+AGG | + | chr8.1:28016201-28016220 | MS.gene44924:CDS | 55.0% | |
| GTGTGCATGAGACAGGCTGT+GGG | + | chr8.1:28016387-28016406 | MS.gene44924:intron | 55.0% | |
| TCATACCTAAGTCACGGGCG+AGG | - | chr8.1:28015563-28015582 | None:intergenic | 55.0% | |
| TGTGTGCATGAGACAGGCTG+TGG | + | chr8.1:28016386-28016405 | MS.gene44924:intron | 55.0% | |
| ! | GAATTAGGTGCTGCCGGGAA+TGG | + | chr8.1:28016191-28016210 | MS.gene44924:intron | 55.0% |
| ! | TCCCTTGCCGTTTCATCCCT+CGG | + | chr8.1:28016023-28016042 | MS.gene44924:CDS | 55.0% |
| !! | GTTGGCGTCGGTCCTAATCT+CGG | + | chr8.1:28015489-28015508 | MS.gene44924:CDS | 55.0% |
| !! | TTATCAGCGGTGTCGGCTGT+CGG | + | chr8.1:28016764-28016783 | MS.gene44924:intron | 55.0% |
| ACCTAAGTCACGGGCGAGGA+TGG | - | chr8.1:28015559-28015578 | None:intergenic | 60.0% | |
| GCCGAGGGATGAAACGGCAA+GGG | - | chr8.1:28016027-28016046 | None:intergenic | 60.0% | |
| GCGATGGAGAGGCCGAGATT+AGG | - | chr8.1:28015504-28015523 | None:intergenic | 60.0% | |
| !! | AGCACAGTTGAAGGCGCCGA+GGG | - | chr8.1:28016042-28016061 | None:intergenic | 60.0% |
| !! | GAAGGCGCCGAGGGATGAAA+CGG | - | chr8.1:28016033-28016052 | None:intergenic | 60.0% |
| ACAACAACGGCGTCGTCGCG+AGG | + | chr8.1:28017134-28017153 | MS.gene44924:CDS | 65.0% | |
| CGCCGAGGGATGAAACGGCA+AGG | - | chr8.1:28016028-28016047 | None:intergenic | 65.0% | |
| GCCATCCTCGCCCGTGACTT+AGG | + | chr8.1:28015555-28015574 | MS.gene44924:CDS | 65.0% | |
| GTCACGGGCGAGGATGGCAA+CGG | - | chr8.1:28015553-28015572 | None:intergenic | 65.0% | |
| TCGCGAGGAGGAGGAAGTGG+TGG | + | chr8.1:28017149-28017168 | MS.gene44924:CDS | 65.0% | |
| TCGTCGCGAGGAGGAGGAAG+TGG | + | chr8.1:28017146-28017165 | MS.gene44924:CDS | 65.0% | |
| !! | GAGCACAGTTGAAGGCGCCG+AGG | - | chr8.1:28016043-28016062 | None:intergenic | 65.0% |
| ACAACGGCGTCGTCGCGAGG+AGG | + | chr8.1:28017137-28017156 | MS.gene44924:CDS | 70.0% | |
| ACGGCGTCGTCGCGAGGAGG+AGG | + | chr8.1:28017140-28017159 | MS.gene44924:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 28015447 | 28017280 | 28015447 | ID=MS.gene44924 |
| chr8.1 | mRNA | 28015447 | 28017280 | 28015447 | ID=MS.gene44924.t1;Parent=MS.gene44924 |
| chr8.1 | exon | 28015447 | 28015576 | 28015447 | ID=MS.gene44924.t1.exon1;Parent=MS.gene44924.t1 |
| chr8.1 | CDS | 28015447 | 28015576 | 28015447 | ID=cds.MS.gene44924.t1;Parent=MS.gene44924.t1 |
| chr8.1 | exon | 28015802 | 28016067 | 28015802 | ID=MS.gene44924.t1.exon2;Parent=MS.gene44924.t1 |
| chr8.1 | CDS | 28015802 | 28016067 | 28015802 | ID=cds.MS.gene44924.t1;Parent=MS.gene44924.t1 |
| chr8.1 | exon | 28016198 | 28016291 | 28016198 | ID=MS.gene44924.t1.exon3;Parent=MS.gene44924.t1 |
| chr8.1 | CDS | 28016198 | 28016291 | 28016198 | ID=cds.MS.gene44924.t1;Parent=MS.gene44924.t1 |
| chr8.1 | exon | 28016402 | 28016513 | 28016402 | ID=MS.gene44924.t1.exon4;Parent=MS.gene44924.t1 |
| chr8.1 | CDS | 28016402 | 28016513 | 28016402 | ID=cds.MS.gene44924.t1;Parent=MS.gene44924.t1 |
| chr8.1 | exon | 28017121 | 28017280 | 28017121 | ID=MS.gene44924.t1.exon5;Parent=MS.gene44924.t1 |
| chr8.1 | CDS | 28017121 | 28017280 | 28017121 | ID=cds.MS.gene44924.t1;Parent=MS.gene44924.t1 |
| Gene Sequence |
| Protein sequence |
