Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45051.t1 | KEH27764.1 | 55.6 | 196 | 74 | 7 | 3 | 186 | 7 | 201 | 3.00E-39 | 171.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45051.t1 | A0A072UD94 | 55.6 | 196 | 74 | 7 | 3 | 186 | 7 | 201 | 2.2e-39 | 171.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050114 | MS.gene45051 | -0.806183 | 9.31E-50 | -1.69E-46 |
| MS.gene050838 | MS.gene45051 | -0.818335 | 2.07E-52 | -1.69E-46 |
| MS.gene050941 | MS.gene45051 | -0.811127 | 8.18E-51 | -1.69E-46 |
| MS.gene051003 | MS.gene45051 | -0.829118 | 6.16E-55 | -1.69E-46 |
| MS.gene051343 | MS.gene45051 | -0.825801 | 3.85E-54 | -1.69E-46 |
| MS.gene051848 | MS.gene45051 | 0.812044 | 5.17E-51 | -1.69E-46 |
| MS.gene051975 | MS.gene45051 | -0.816262 | 6.06E-52 | -1.69E-46 |
| MS.gene052335 | MS.gene45051 | -0.840429 | 8.74E-58 | -1.69E-46 |
| MS.gene052342 | MS.gene45051 | -0.800263 | 1.56E-48 | -1.69E-46 |
| MS.gene053058 | MS.gene45051 | -0.806002 | 1.02E-49 | -1.69E-46 |
| MS.gene055311 | MS.gene45051 | -0.820247 | 7.59E-53 | -1.69E-46 |
| MS.gene055313 | MS.gene45051 | -0.816973 | 4.20E-52 | -1.69E-46 |
| MS.gene055603 | MS.gene45051 | -0.802714 | 4.92E-49 | -1.69E-46 |
| MS.gene056181 | MS.gene45051 | -0.808943 | 2.42E-50 | -1.69E-46 |
| MS.gene056787 | MS.gene45051 | -0.836036 | 1.18E-56 | -1.69E-46 |
| MS.gene056986 | MS.gene45051 | -0.803979 | 2.69E-49 | -1.69E-46 |
| MS.gene057890 | MS.gene45051 | 0.809225 | 2.10E-50 | -1.69E-46 |
| MS.gene058758 | MS.gene45051 | -0.819275 | 1.26E-52 | -1.69E-46 |
| MS.gene059170 | MS.gene45051 | -0.810243 | 1.27E-50 | -1.69E-46 |
| MS.gene059283 | MS.gene45051 | -0.814763 | 1.31E-51 | -1.69E-46 |
| MS.gene060777 | MS.gene45051 | -0.80096 | 1.13E-48 | -1.69E-46 |
| MS.gene060869 | MS.gene45051 | -0.80751 | 4.88E-50 | -1.69E-46 |
| MS.gene060932 | MS.gene45051 | -0.8334 | 5.45E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene45051.t1 | MTR_5g034570 | 55.612 | 196 | 74 | 7 | 3 | 186 | 7 | 201 | 4.80e-60 | 186 |
| MS.gene45051.t1 | MTR_5g034570 | 54.211 | 190 | 74 | 7 | 3 | 180 | 7 | 195 | 5.65e-54 | 171 |
| MS.gene45051.t1 | MTR_5g034570 | 54.211 | 190 | 73 | 8 | 3 | 180 | 7 | 194 | 6.65e-52 | 166 |
| MS.gene45051.t1 | MTR_5g034570 | 49.324 | 148 | 64 | 5 | 3 | 140 | 7 | 153 | 1.02e-34 | 120 |
| MS.gene45051.t1 | MTR_5g033150 | 61.404 | 57 | 22 | 0 | 130 | 186 | 142 | 198 | 6.15e-14 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTTCTCTTTAGTCGGTAT+TGG | 0.237662 | 5.3:+23398648 | MS.gene45051:intron |
| AAAGTAAGACACCTCTTTAA+AGG | 0.239921 | 5.3:-23398949 | None:intergenic |
| GCTGTTGTTAATTAGGATTT+TGG | 0.244977 | 5.3:+23398790 | MS.gene45051:intron |
| AGACACCTCTTTAAAGGTTT+TGG | 0.263027 | 5.3:-23398943 | None:intergenic |
| TAAATGATACAGGGTCTTAA+AGG | 0.283245 | 5.3:+23399102 | MS.gene45051:intron |
| AGAGAGGAGACGGCGGGAAC+AGG | 0.302827 | 5.3:-23398464 | None:intergenic |
| ATGTGGAGTTCTTGAGTAAT+TGG | 0.328263 | 5.3:-23398974 | None:intergenic |
| GCAACGAACCACCGGGTGAT+TGG | 0.360230 | 5.3:-23398531 | None:intergenic |
| GGTATCTCCTCGTCGGGGTT+GGG | 0.360858 | 5.3:-23398434 | None:intergenic |
| AGGTATCTCCTCGTCGGGGT+TGG | 0.393919 | 5.3:-23398435 | None:intergenic |
| CGTCGGCGCGAGCGATTAAA+CGG | 0.399318 | 5.3:-23398352 | None:intergenic |
| TGGCCGACAACGGCGAGAAC+GGG | 0.423702 | 5.3:+23398324 | MS.gene45051:CDS |
| AGTGAGGGAGAGAGGGAGAG+AGG | 0.431615 | 5.3:-23398480 | None:intergenic |
| GAAGGAGGTATCTCCTCGTC+GGG | 0.436210 | 5.3:-23398440 | None:intergenic |
| GGAGAGAGGGAGAGAGGAGA+CGG | 0.446013 | 5.3:-23398474 | None:intergenic |
| TCGAAATACCATTGCTACTC+AGG | 0.447368 | 5.3:+23398822 | MS.gene45051:CDS |
| GAGACGGCGGGAACAGGAGA+AGG | 0.467410 | 5.3:-23398458 | None:intergenic |
| AGCAACCAAAACCTTTAAAG+AGG | 0.470161 | 5.3:+23398938 | MS.gene45051:CDS |
| TCGGCGGGAGTGAGGGAGAG+AGG | 0.471767 | 5.3:-23398488 | None:intergenic |
| ATGACGATGCAACGAACCAC+CGG | 0.478429 | 5.3:-23398539 | None:intergenic |
| GAGAGGGAGAGAGGAGACGG+CGG | 0.478961 | 5.3:-23398471 | None:intergenic |
| TATCCCGTTCTCGCCGTTGT+CGG | 0.481934 | 5.3:-23398327 | None:intergenic |
| CCCGTTGGTTTGCTGAAGAT+AGG | 0.490333 | 5.3:-23399136 | None:intergenic |
| TCTATTTCGTCGATGTCGGC+GGG | 0.498150 | 5.3:-23398503 | None:intergenic |
| GCAGGAAGTAGAGCAGCATC+AGG | 0.498588 | 5.3:+23400081 | MS.gene45051:intron |
| AGAGGGAGAGAGGAGACGGC+GGG | 0.508591 | 5.3:-23398470 | None:intergenic |
| GTTCCAAGCAGTGGATCTAC+TGG | 0.509185 | 5.3:+23400124 | MS.gene45051:CDS |
| GTCTATTTCGTCGATGTCGG+CGG | 0.510243 | 5.3:-23398504 | None:intergenic |
| CCTATCTTCAGCAAACCAAC+GGG | 0.513673 | 5.3:+23399136 | MS.gene45051:CDS |
| GTCGATGTCGGCGGGAGTGA+GGG | 0.514142 | 5.3:-23398495 | None:intergenic |
| CGGCGGGAGTGAGGGAGAGA+GGG | 0.515528 | 5.3:-23398487 | None:intergenic |
| TATGTCTATTTCGTCGATGT+CGG | 0.521128 | 5.3:-23398507 | None:intergenic |
| ATGGCCGACAACGGCGAGAA+CGG | 0.525315 | 5.3:+23398323 | MS.gene45051:CDS |
| CGTCGATGTCGGCGGGAGTG+AGG | 0.526628 | 5.3:-23398496 | None:intergenic |
| GAGATATCTAGCGCTATCGT+TGG | 0.552149 | 5.3:+23398377 | MS.gene45051:CDS |
| AACCAACGGGTACTTTAGAC+AGG | 0.554816 | 5.3:+23399149 | MS.gene45051:CDS |
| ACCTATCTTCAGCAAACCAA+CGG | 0.555623 | 5.3:+23399135 | MS.gene45051:CDS |
| GTCGGCGCGAGCGATTAAAC+GGG | 0.556136 | 5.3:-23398351 | None:intergenic |
| TAGTCGGTATTGGATTCGAA+TGG | 0.563622 | 5.3:+23398658 | MS.gene45051:intron |
| TGACGATGCAACGAACCACC+GGG | 0.565001 | 5.3:-23398538 | None:intergenic |
| CTCAAGAACTCCACATCTCA+AGG | 0.565553 | 5.3:+23398981 | MS.gene45051:CDS |
| AGAGCTGTTGTTCCAAGCAG+TGG | 0.579332 | 5.3:+23400115 | MS.gene45051:CDS |
| CGAAGCAGGATGGCCGACAA+CGG | 0.583887 | 5.3:+23398314 | None:intergenic |
| ATACCAGTAGATCCACTGCT+TGG | 0.584757 | 5.3:-23400127 | None:intergenic |
| AGAAGGAGGTATCTCCTCGT+CGG | 0.591829 | 5.3:-23398441 | None:intergenic |
| ACGGCGGGAACAGGAGAAGG+AGG | 0.599236 | 5.3:-23398455 | None:intergenic |
| ATTACATACCTGAGTAGCAA+TGG | 0.612955 | 5.3:-23398830 | None:intergenic |
| GACCTGTCTAAAGTACCCGT+TGG | 0.631437 | 5.3:-23399151 | None:intergenic |
| AGCGCTAGATATCTCGTCGT+CGG | 0.651689 | 5.3:-23398369 | None:intergenic |
| AATAGACATATCCAATCACC+CGG | 0.682942 | 5.3:+23398520 | MS.gene45051:CDS |
| CAGGAAGCCCAACCCCGACG+AGG | 0.688650 | 5.3:+23398427 | MS.gene45051:CDS |
| AAGGAGGTATCTCCTCGTCG+GGG | 0.722794 | 5.3:-23398439 | None:intergenic |
| AGACATATCCAATCACCCGG+TGG | 0.761992 | 5.3:+23398523 | MS.gene45051:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATATCTATAATTGCT+TGG | + | chr5.3:23399819-23399838 | MS.gene45051:intron | 15.0% |
| !!! | AGCAATTATAGATATTTTTT+TGG | - | chr5.3:23399819-23399838 | None:intergenic | 15.0% |
| !! | AAAACATCATTGATGAAAAA+TGG | - | chr5.3:23399214-23399233 | None:intergenic | 20.0% |
| !! | AAACATCATTGATGAAAAAT+GGG | - | chr5.3:23399213-23399232 | None:intergenic | 20.0% |
| !! | AATATAGAAAAAGAGTTCAA+TGG | - | chr5.3:23399343-23399362 | None:intergenic | 20.0% |
| !! | ATATAGAAAAAGAGTTCAAT+GGG | - | chr5.3:23399342-23399361 | None:intergenic | 20.0% |
| !! | TAAACATTACTATTTACTGT+CGG | + | chr5.3:23399789-23399808 | MS.gene45051:intron | 20.0% |
| !! | TAAGATAATAATGAACATTC+AGG | + | chr5.3:23398912-23398931 | MS.gene45051:intron | 20.0% |
| !! | TATTCTATACTTCAGTTATT+TGG | - | chr5.3:23399243-23399262 | None:intergenic | 20.0% |
| !! | TTAAAAATAGAGAACAAAGT+AGG | - | chr5.3:23399020-23399039 | None:intergenic | 20.0% |
| !!! | AAAACTTATTTTTAGCATAG+TGG | - | chr5.3:23399539-23399558 | None:intergenic | 20.0% |
| !!! | ATCCATTTGAAATAAATTGA+AGG | - | chr5.3:23400052-23400071 | None:intergenic | 20.0% |
| !!! | TCCATTTGAAATAAATTGAA+GGG | - | chr5.3:23400051-23400070 | None:intergenic | 20.0% |
| ! | AATGCTAAATTACTATGTGA+TGG | - | chr5.3:23399064-23399083 | None:intergenic | 25.0% |
| ! | ACCCTTCAATTTATTTCAAA+TGG | + | chr5.3:23400047-23400066 | MS.gene45051:intron | 25.0% |
| ! | ATGAATAATCGAATAGTGAA+AGG | - | chr5.3:23398742-23398761 | None:intergenic | 25.0% |
| ! | ATGCATTTAAAGATATTGCA+AGG | - | chr5.3:23399516-23399535 | None:intergenic | 25.0% |
| ! | GTATAATTGGTAGATCTAAT+GGG | - | chr5.3:23400022-23400041 | None:intergenic | 25.0% |
| ! | TATAGAAAAAGAGTTCAATG+GGG | - | chr5.3:23399341-23399360 | None:intergenic | 25.0% |
| ! | TGAATAATCGAATAGTGAAA+GGG | - | chr5.3:23398741-23398760 | None:intergenic | 25.0% |
| ! | TGTATAATTGGTAGATCTAA+TGG | - | chr5.3:23400023-23400042 | None:intergenic | 25.0% |
| ! | TTTGATTGATGCTATAAACA+AGG | + | chr5.3:23399301-23399320 | MS.gene45051:intron | 25.0% |
| !! | ATTTGTTTGCTAAATGATAC+AGG | + | chr5.3:23399092-23399111 | MS.gene45051:intron | 25.0% |
| !! | TGAAGGGTAATTTGTATAAT+TGG | - | chr5.3:23400035-23400054 | None:intergenic | 25.0% |
| !! | TTTGTTTGCTAAATGATACA+GGG | + | chr5.3:23399093-23399112 | MS.gene45051:intron | 25.0% |
| !!! | CATTTTTGCTGTTGTTAATT+AGG | + | chr5.3:23398783-23398802 | MS.gene45051:intron | 25.0% |
| AAAGTAAGACACCTCTTTAA+AGG | - | chr5.3:23398952-23398971 | None:intergenic | 30.0% | |
| AATACTAAATCCCAATGTCA+TGG | + | chr5.3:23399419-23399438 | MS.gene45051:intron | 30.0% | |
| ACAAGAATTCTAGCATGTTA+TGG | - | chr5.3:23399995-23400014 | None:intergenic | 30.0% | |
| AGAATTCTACTAAAGTTCTG+TGG | - | chr5.3:23399964-23399983 | None:intergenic | 30.0% | |
| ATCATACATACCATGACATT+GGG | - | chr5.3:23399432-23399451 | None:intergenic | 30.0% | |
| CAATGTTATAGCTTTCAATG+TGG | - | chr5.3:23399482-23399501 | None:intergenic | 30.0% | |
| CAGAACTTTAGTAGAATTCT+TGG | + | chr5.3:23399964-23399983 | MS.gene45051:intron | 30.0% | |
| GAATAATCGAATAGTGAAAG+GGG | - | chr5.3:23398740-23398759 | None:intergenic | 30.0% | |
| GGATTCGAATGGATAAAAAA+CGG | + | chr5.3:23398669-23398688 | MS.gene45051:CDS | 30.0% | |
| TAAATGATACAGGGTCTTAA+AGG | + | chr5.3:23399102-23399121 | MS.gene45051:intron | 30.0% | |
| TATCTATAATTGCTTGGTCA+AGG | + | chr5.3:23399825-23399844 | MS.gene45051:intron | 30.0% | |
| TTTATAGCGATTAAGCAAGA+AGG | + | chr5.3:23399571-23399590 | MS.gene45051:intron | 30.0% | |
| ! | AGCACATATCTGTATGTTTT+GGG | + | chr5.3:23399602-23399621 | MS.gene45051:intron | 30.0% |
| ! | GCTGTTGTTAATTAGGATTT+TGG | + | chr5.3:23398790-23398809 | MS.gene45051:intron | 30.0% |
| ! | GTATTTAAAGCAAGAAGTTC+AGG | - | chr5.3:23399404-23399423 | None:intergenic | 30.0% |
| !!! | TGAGTCCAATTTTTTCCTTA+AGG | + | chr5.3:23399634-23399653 | MS.gene45051:intron | 30.0% |
| AAAGTTCTGTGGCTTAGATA+CGG | - | chr5.3:23399953-23399972 | None:intergenic | 35.0% | |
| AATAGACATATCCAATCACC+CGG | + | chr5.3:23398520-23398539 | MS.gene45051:CDS | 35.0% | |
| ATGTGGAGTTCTTGAGTAAT+TGG | - | chr5.3:23398977-23398996 | None:intergenic | 35.0% | |
| ATTACATACCTGAGTAGCAA+TGG | - | chr5.3:23398833-23398852 | None:intergenic | 35.0% | |
| CAATGTCATGGTATGTATGA+TGG | + | chr5.3:23399431-23399450 | MS.gene45051:intron | 35.0% | |
| CATCATACATACCATGACAT+TGG | - | chr5.3:23399433-23399452 | None:intergenic | 35.0% | |
| CATGAATATTGCAAGAGAAG+AGG | + | chr5.3:23399697-23399716 | MS.gene45051:intron | 35.0% | |
| CTCTGCCTTAAGGAAAAAAT+TGG | - | chr5.3:23399642-23399661 | None:intergenic | 35.0% | |
| CTTCTCTTGCAATATTCATG+TGG | - | chr5.3:23399697-23399716 | None:intergenic | 35.0% | |
| GGCTTAGATACGGATATTAT+TGG | - | chr5.3:23399943-23399962 | None:intergenic | 35.0% | |
| GTAGCATAACATGTTAGAGT+TGG | + | chr5.3:23399899-23399918 | MS.gene45051:intron | 35.0% | |
| TAGAAAAAGACCTTGAGATG+TGG | - | chr5.3:23398994-23399013 | None:intergenic | 35.0% | |
| TATGTCTATTTCGTCGATGT+CGG | - | chr5.3:23398510-23398529 | None:intergenic | 35.0% | |
| TCATTGATGAAAAATGGGAC+AGG | - | chr5.3:23399208-23399227 | None:intergenic | 35.0% | |
| TCCTTTCTGTTCTCTTTAGT+CGG | + | chr5.3:23398642-23398661 | MS.gene45051:intron | 35.0% | |
| ! | AGCAACCAAAACCTTTAAAG+AGG | + | chr5.3:23398938-23398957 | MS.gene45051:CDS | 35.0% |
| ! | ATACGGATATTATTGGTCTC+AGG | - | chr5.3:23399936-23399955 | None:intergenic | 35.0% |
| ! | CGATCTGATTTTCATGATTC+AGG | + | chr5.3:23398701-23398720 | MS.gene45051:CDS | 35.0% |
| ! | GAGCACATATCTGTATGTTT+TGG | + | chr5.3:23399601-23399620 | MS.gene45051:intron | 35.0% |
| !! | AGACACCTCTTTAAAGGTTT+TGG | - | chr5.3:23398946-23398965 | None:intergenic | 35.0% |
| AACATACAGATATGTGCTCG+TGG | - | chr5.3:23399600-23399619 | None:intergenic | 40.0% | |
| ACCGACTAAAGAGAACAGAA+AGG | - | chr5.3:23398646-23398665 | None:intergenic | 40.0% | |
| ACCTATCTTCAGCAAACCAA+CGG | + | chr5.3:23399135-23399154 | MS.gene45051:CDS | 40.0% | |
| AGAAGTTCAGGCCAAAAATG+AGG | - | chr5.3:23399392-23399411 | None:intergenic | 40.0% | |
| ATAGCGTCGCAAAAAGATTC+AGG | + | chr5.3:23398408-23398427 | MS.gene45051:CDS | 40.0% | |
| CTAAAGAGAACAGAAAGGAG+TGG | - | chr5.3:23398641-23398660 | None:intergenic | 40.0% | |
| CTGTTCTCTTTAGTCGGTAT+TGG | + | chr5.3:23398648-23398667 | MS.gene45051:intron | 40.0% | |
| GAAGTTCAGGCCAAAAATGA+GGG | - | chr5.3:23399391-23399410 | None:intergenic | 40.0% | |
| GAATATTGCAAGAGAAGAGG+AGG | + | chr5.3:23399700-23399719 | MS.gene45051:intron | 40.0% | |
| GTTATAGCTTTCAATGTGGC+AGG | - | chr5.3:23399478-23399497 | None:intergenic | 40.0% | |
| TCGAAATACCATTGCTACTC+AGG | + | chr5.3:23398822-23398841 | MS.gene45051:CDS | 40.0% | |
| TGTCATGGTATGTATGATGG+TGG | + | chr5.3:23399434-23399453 | MS.gene45051:intron | 40.0% | |
| ! | CTATATTCCATGTAGCTCTG+TGG | + | chr5.3:23399356-23399375 | MS.gene45051:intron | 40.0% |
| ! | GAATCTTTTTGCGACGCTAT+CGG | - | chr5.3:23398408-23398427 | None:intergenic | 40.0% |
| ! | TAGTCGGTATTGGATTCGAA+TGG | + | chr5.3:23398658-23398677 | MS.gene45051:intron | 40.0% |
| ! | TTATGCTACAAGTGTTGCAG+TGG | - | chr5.3:23399888-23399907 | None:intergenic | 40.0% |
| AACCAACGGGTACTTTAGAC+AGG | + | chr5.3:23399149-23399168 | MS.gene45051:CDS | 45.0% | |
| ATACCAGTAGATCCACTGCT+TGG | - | chr5.3:23400130-23400149 | None:intergenic | 45.0% | |
| ATAGCTTTCAATGTGGCAGG+AGG | - | chr5.3:23399475-23399494 | None:intergenic | 45.0% | |
| ATTGCTTGGTCAAGGAGAGA+AGG | + | chr5.3:23399833-23399852 | MS.gene45051:intron | 45.0% | |
| CCTATCTTCAGCAAACCAAC+GGG | + | chr5.3:23399136-23399155 | MS.gene45051:CDS | 45.0% | |
| CTCAAGAACTCCACATCTCA+AGG | + | chr5.3:23398981-23399000 | MS.gene45051:CDS | 45.0% | |
| CTTAAGGCAGAGAGACTAGA+GGG | + | chr5.3:23399650-23399669 | MS.gene45051:intron | 45.0% | |
| GAAGCTGTCGATACTGAGTA+TGG | - | chr5.3:23399863-23399882 | None:intergenic | 45.0% | |
| GAGATATCTAGCGCTATCGT+TGG | + | chr5.3:23398377-23398396 | MS.gene45051:CDS | 45.0% | |
| TCAGGCCAAAAATGAGGGAT+TGG | - | chr5.3:23399386-23399405 | None:intergenic | 45.0% | |
| TTGCAAGAGAAGAGGAGGAT+TGG | + | chr5.3:23399705-23399724 | MS.gene45051:intron | 45.0% | |
| ! | GACTGCCAATCCCTCATTTT+TGG | + | chr5.3:23399378-23399397 | MS.gene45051:intron | 45.0% |
| AGACATATCCAATCACCCGG+TGG | + | chr5.3:23398523-23398542 | MS.gene45051:CDS | 50.0% | |
| AGAGCTGTTGTTCCAAGCAG+TGG | + | chr5.3:23400115-23400134 | MS.gene45051:CDS | 50.0% | |
| AGCGCTAGATATCTCGTCGT+CGG | - | chr5.3:23398372-23398391 | None:intergenic | 50.0% | |
| ATGACGATGCAACGAACCAC+CGG | - | chr5.3:23398542-23398561 | None:intergenic | 50.0% | |
| CAAATGGATCTGCCAACTGC+AGG | + | chr5.3:23400063-23400082 | MS.gene45051:intron | 50.0% | |
| CCTCTAGTCTCTCTGCCTTA+AGG | - | chr5.3:23399652-23399671 | None:intergenic | 50.0% | |
| CCTTAAGGCAGAGAGACTAG+AGG | + | chr5.3:23399649-23399668 | MS.gene45051:intron | 50.0% | |
| GTCTATTTCGTCGATGTCGG+CGG | - | chr5.3:23398507-23398526 | None:intergenic | 50.0% | |
| GTTCCAAGCAGTGGATCTAC+TGG | + | chr5.3:23400124-23400143 | MS.gene45051:CDS | 50.0% | |
| TCTATTTCGTCGATGTCGGC+GGG | - | chr5.3:23398506-23398525 | None:intergenic | 50.0% | |
| ! | GACCTGTCTAAAGTACCCGT+TGG | - | chr5.3:23399154-23399173 | None:intergenic | 50.0% |
| ! | TGCTACAAGTGTTGCAGTGG+AGG | - | chr5.3:23399885-23399904 | None:intergenic | 50.0% |
| !! | AGAAGGAGGTATCTCCTCGT+CGG | - | chr5.3:23398444-23398463 | None:intergenic | 50.0% |
| !! | CCCGTTGGTTTGCTGAAGAT+AGG | - | chr5.3:23399139-23399158 | None:intergenic | 50.0% |
| GCAGAGAGACTAGAGGGAGA+GGG | + | chr5.3:23399656-23399675 | MS.gene45051:intron | 55.0% | |
| GCAGGAAGTAGAGCAGCATC+AGG | + | chr5.3:23400081-23400100 | MS.gene45051:intron | 55.0% | |
| GCTGCTCTACTTCCTGCAGT+TGG | - | chr5.3:23400078-23400097 | None:intergenic | 55.0% | |
| TATCCCGTTCTCGCCGTTGT+CGG | - | chr5.3:23398330-23398349 | None:intergenic | 55.0% | |
| TGACGATGCAACGAACCACC+GGG | - | chr5.3:23398541-23398560 | None:intergenic | 55.0% | |
| TGGCAGTCCACAGAGCTACA+TGG | - | chr5.3:23399366-23399385 | None:intergenic | 55.0% | |
| !! | AAGGAGGTATCTCCTCGTCG+GGG | - | chr5.3:23398442-23398461 | None:intergenic | 55.0% |
| !! | GAAGGAGGTATCTCCTCGTC+GGG | - | chr5.3:23398443-23398462 | None:intergenic | 55.0% |
| AGGTATCTCCTCGTCGGGGT+TGG | - | chr5.3:23398438-23398457 | None:intergenic | 60.0% | |
| AGTGAGGGAGAGAGGGAGAG+AGG | - | chr5.3:23398483-23398502 | None:intergenic | 60.0% | |
| ATGGCCGACAACGGCGAGAA+CGG | + | chr5.3:23398323-23398342 | MS.gene45051:CDS | 60.0% | |
| CGTCGGCGCGAGCGATTAAA+CGG | - | chr5.3:23398355-23398374 | None:intergenic | 60.0% | |
| GAGACTAGAGGGAGAGGGAG+AGG | + | chr5.3:23399661-23399680 | MS.gene45051:intron | 60.0% | |
| GCAACGAACCACCGGGTGAT+TGG | - | chr5.3:23398534-23398553 | None:intergenic | 60.0% | |
| GGAGAGAGGGAGAGAGGAGA+CGG | - | chr5.3:23398477-23398496 | None:intergenic | 60.0% | |
| GGCAGAGAGACTAGAGGGAG+AGG | + | chr5.3:23399655-23399674 | MS.gene45051:intron | 60.0% | |
| GGTATCTCCTCGTCGGGGTT+GGG | - | chr5.3:23398437-23398456 | None:intergenic | 60.0% | |
| GTCGGCGCGAGCGATTAAAC+GGG | - | chr5.3:23398354-23398373 | None:intergenic | 60.0% | |
| ACGGCGGGAACAGGAGAAGG+AGG | - | chr5.3:23398458-23398477 | None:intergenic | 65.0% | |
| AGAGAGGAGACGGCGGGAAC+AGG | - | chr5.3:23398467-23398486 | None:intergenic | 65.0% | |
| AGAGGGAGAGAGGAGACGGC+GGG | - | chr5.3:23398473-23398492 | None:intergenic | 65.0% | |
| GAGACGGCGGGAACAGGAGA+AGG | - | chr5.3:23398461-23398480 | None:intergenic | 65.0% | |
| GAGAGGGAGAGAGGAGACGG+CGG | - | chr5.3:23398474-23398493 | None:intergenic | 65.0% | |
| GTCGATGTCGGCGGGAGTGA+GGG | - | chr5.3:23398498-23398517 | None:intergenic | 65.0% | |
| TGGCCGACAACGGCGAGAAC+GGG | + | chr5.3:23398324-23398343 | MS.gene45051:CDS | 65.0% | |
| CAGGAAGCCCAACCCCGACG+AGG | + | chr5.3:23398427-23398446 | MS.gene45051:CDS | 70.0% | |
| CGGCGGGAGTGAGGGAGAGA+GGG | - | chr5.3:23398490-23398509 | None:intergenic | 70.0% | |
| CGTCGATGTCGGCGGGAGTG+AGG | - | chr5.3:23398499-23398518 | None:intergenic | 70.0% | |
| TCGGCGGGAGTGAGGGAGAG+AGG | - | chr5.3:23398491-23398510 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 23398323 | 23400168 | 23398323 | ID=MS.gene45051 |
| chr5.3 | mRNA | 23398323 | 23400168 | 23398323 | ID=MS.gene45051.t1;Parent=MS.gene45051 |
| chr5.3 | exon | 23398323 | 23398572 | 23398323 | ID=MS.gene45051.t1.exon1;Parent=MS.gene45051.t1 |
| chr5.3 | CDS | 23398323 | 23398572 | 23398323 | ID=cds.MS.gene45051.t1;Parent=MS.gene45051.t1 |
| chr5.3 | exon | 23398661 | 23398722 | 23398661 | ID=MS.gene45051.t1.exon2;Parent=MS.gene45051.t1 |
| chr5.3 | CDS | 23398661 | 23398722 | 23398661 | ID=cds.MS.gene45051.t1;Parent=MS.gene45051.t1 |
| chr5.3 | exon | 23398805 | 23398843 | 23398805 | ID=MS.gene45051.t1.exon3;Parent=MS.gene45051.t1 |
| chr5.3 | CDS | 23398805 | 23398843 | 23398805 | ID=cds.MS.gene45051.t1;Parent=MS.gene45051.t1 |
| chr5.3 | exon | 23398934 | 23399002 | 23398934 | ID=MS.gene45051.t1.exon4;Parent=MS.gene45051.t1 |
| chr5.3 | CDS | 23398934 | 23399002 | 23398934 | ID=cds.MS.gene45051.t1;Parent=MS.gene45051.t1 |
| chr5.3 | exon | 23399114 | 23399170 | 23399114 | ID=MS.gene45051.t1.exon5;Parent=MS.gene45051.t1 |
| chr5.3 | CDS | 23399114 | 23399170 | 23399114 | ID=cds.MS.gene45051.t1;Parent=MS.gene45051.t1 |
| chr5.3 | exon | 23400085 | 23400168 | 23400085 | ID=MS.gene45051.t1.exon6;Parent=MS.gene45051.t1 |
| chr5.3 | CDS | 23400085 | 23400168 | 23400085 | ID=cds.MS.gene45051.t1;Parent=MS.gene45051.t1 |
| Gene Sequence |
| Protein sequence |
