Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46491.t1 | XP_013467694.1 | 100 | 207 | 0 | 0 | 1 | 207 | 33 | 239 | 2.60E-108 | 401.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46491.t1 | O65731 | 94.4 | 196 | 10 | 1 | 13 | 207 | 2 | 197 | 5.2e-97 | 355.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene46491.t1 | A0A072VJE7 | 100.0 | 207 | 0 | 0 | 1 | 207 | 33 | 239 | 1.9e-108 | 401.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050290 | MS.gene46491 | 0.812126 | 4.96E-51 | -1.69E-46 |
| MS.gene051330 | MS.gene46491 | 0.802774 | 4.78E-49 | -1.69E-46 |
| MS.gene051746 | MS.gene46491 | 0.855128 | 7.77E-62 | -1.69E-46 |
| MS.gene051748 | MS.gene46491 | 0.848735 | 5.07E-60 | -1.69E-46 |
| MS.gene051850 | MS.gene46491 | 0.830312 | 3.15E-55 | -1.69E-46 |
| MS.gene051903 | MS.gene46491 | 0.843481 | 1.36E-58 | -1.69E-46 |
| MS.gene052947 | MS.gene46491 | 0.821582 | 3.74E-53 | -1.69E-46 |
| MS.gene053109 | MS.gene46491 | 0.831389 | 1.72E-55 | -1.69E-46 |
| MS.gene053952 | MS.gene46491 | 0.800145 | 1.65E-48 | -1.69E-46 |
| MS.gene054937 | MS.gene46491 | 0.858782 | 6.50E-63 | -1.69E-46 |
| MS.gene055780 | MS.gene46491 | 0.814808 | 1.28E-51 | -1.69E-46 |
| MS.gene056631 | MS.gene46491 | 0.811622 | 6.38E-51 | -1.69E-46 |
| MS.gene057094 | MS.gene46491 | 0.857034 | 2.15E-62 | -1.69E-46 |
| MS.gene06001 | MS.gene46491 | 0.855191 | 7.44E-62 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 46 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATCAACAATGACCTGAAT+TGG | 0.291343 | 1.4:-45343945 | None:intergenic |
| CAGATTACTGATTTGTCTCT+TGG | 0.294356 | 1.4:+45343708 | MS.gene46491:intron |
| GATACTCGAAGAAGCGATTC+AGG | 0.345165 | 1.4:+45343787 | MS.gene46491:CDS |
| AGCTTGACTTCGATCAGGTT+TGG | 0.359219 | 1.4:-45343202 | None:intergenic |
| CTGGAGCTTCGATGACGTTC+AGG | 0.377509 | 1.4:+45343234 | MS.gene46491:CDS |
| CAATGACCTGAATTGGGTTC+TGG | 0.383650 | 1.4:-45343938 | None:intergenic |
| TGGAACATATGTTGCATGTT+TGG | 0.388336 | 1.4:-45343751 | None:intergenic |
| AGATTACTGATTTGTCTCTT+GGG | 0.391228 | 1.4:+45343709 | MS.gene46491:intron |
| GGATCTGAAACGACTGCAAC+AGG | 0.391313 | 1.4:-45343181 | None:intergenic |
| AACCGACCAGAACCCAATTC+AGG | 0.402601 | 1.4:+45343932 | MS.gene46491:CDS |
| GAAAGAAGCTTATGGCTGTT+AGG | 0.402629 | 1.4:+45343874 | MS.gene46491:CDS |
| TTGTTGATGCTGTCGTCAAC+AGG | 0.441734 | 1.4:+45343958 | MS.gene46491:CDS |
| GCCATCTATCTTCTAACTAC+TGG | 0.451088 | 1.4:+45345838 | MS.gene46491:CDS |
| GAACTTATTAATGCAGCAAA+AGG | 0.453667 | 1.4:+45345916 | MS.gene46491:CDS |
| GAACAATGGAAAGAAGCTTA+TGG | 0.462961 | 1.4:+45343866 | MS.gene46491:CDS |
| AATTGTCTTAATATTTCTAA+AGG | 0.465228 | 1.4:-45345875 | None:intergenic |
| CGTGAAGATGCTACTCGTAT+TGG | 0.468388 | 1.4:+45345754 | MS.gene46491:CDS |
| TGAAGAGCTTGACTTCGATC+AGG | 0.472581 | 1.4:-45343207 | None:intergenic |
| GTTGCTAAGGCAAATCGTTA+AGG | 0.480990 | 1.4:+45346102 | MS.gene46491:CDS |
| CAGCAAAAGGATCATCCAAC+AGG | 0.484289 | 1.4:+45345929 | MS.gene46491:CDS |
| GCTACTCGTATTGGTTCTGC+TGG | 0.495376 | 1.4:+45345763 | MS.gene46491:CDS |
| GATTACTGATTTGTCTCTTG+GGG | 0.496398 | 1.4:+45343710 | MS.gene46491:intron |
| AAGTCAAGCTCTTCAACCGC+TGG | 0.503610 | 1.4:+45343215 | MS.gene46491:CDS |
| CATCAACAATGACCTGAATT+GGG | 0.506610 | 1.4:-45343944 | None:intergenic |
| ACCAGTAGTTAGAAGATAGA+TGG | 0.507365 | 1.4:-45345839 | None:intergenic |
| TTGTCTCTTGGGGATTACAT+TGG | 0.513322 | 1.4:+45343720 | MS.gene46491:CDS |
| TGAAATTGAAAGAGTTGCTA+AGG | 0.514135 | 1.4:+45346089 | MS.gene46491:CDS |
| GGCTTGATTCACACGACGAA+GGG | 0.519901 | 1.4:-45345818 | None:intergenic |
| TGCTGGAGTTGTAAGAAGAC+AGG | 0.532743 | 1.4:+45345780 | MS.gene46491:CDS |
| ACATATGTTCCACACACTGC+TGG | 0.537649 | 1.4:+45343762 | MS.gene46491:CDS |
| TTAGTGAGCCTCTCAACAAT+GGG | 0.543323 | 1.4:-45343822 | None:intergenic |
| TAGGATCATCAAGCATGCTA+TGG | 0.558540 | 1.4:+45343893 | MS.gene46491:CDS |
| CTAACTCTCTCATGATGCAT+GGG | 0.561374 | 1.4:+45343841 | MS.gene46491:CDS |
| GTTAGTGAGCCTCTCAACAA+TGG | 0.562680 | 1.4:-45343823 | None:intergenic |
| ACTAACTCTCTCATGATGCA+TGG | 0.563337 | 1.4:+45343840 | MS.gene46491:CDS |
| ATGATGCATGGGAGGAACAA+TGG | 0.566550 | 1.4:+45343852 | MS.gene46491:CDS |
| AGTTGTAAGAAGACAGGCTG+TGG | 0.574582 | 1.4:+45345786 | MS.gene46491:CDS |
| CTCAGTGTCCCATTGTTGAG+AGG | 0.591866 | 1.4:+45343814 | MS.gene46491:CDS |
| TTCTTCAATGACATCAGCCA+TGG | 0.596830 | 1.4:-45343158 | None:intergenic |
| GACCTGAATTGGGTTCTGGT+CGG | 0.606242 | 1.4:-45343934 | None:intergenic |
| GAGTATCTACCAGCAGTGTG+TGG | 0.639793 | 1.4:-45343771 | None:intergenic |
| ACTCTCTCATGATGCATGGG+AGG | 0.648954 | 1.4:+45343844 | MS.gene46491:CDS |
| GAACGTCATCGAAGCTCCAG+CGG | 0.655762 | 1.4:-45343231 | None:intergenic |
| TGGCTTGATTCACACGACGA+AGG | 0.656812 | 1.4:-45345819 | None:intergenic |
| GCTTGATTCACACGACGAAG+GGG | 0.665666 | 1.4:-45345817 | None:intergenic |
| ATACGAGTAGCATCTTCACG+AGG | 0.785565 | 1.4:-45345751 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATCAAAATTCTATTTATTA+AGG | - | chr1.4:45345458-45345477 | None:intergenic | 10.0% |
| !! | AATTTAAACAAAAAATTAAC+TGG | - | chr1.4:45344191-45344210 | None:intergenic | 10.0% |
| !! | TTAGAAATTAATAAGAAATA+TGG | + | chr1.4:45344892-45344911 | MS.gene46491:intron | 10.0% |
| !!! | TTCTTTTTTTAAATTTTTTC+TGG | + | chr1.4:45344436-45344455 | MS.gene46491:intron | 10.0% |
| !! | ATATTAAAAAAACAATAAGC+TGG | - | chr1.4:45344564-45344583 | None:intergenic | 15.0% |
| !! | TAAATTCTAATTTGACATAT+TGG | + | chr1.4:45344205-45344224 | MS.gene46491:intron | 15.0% |
| !!! | AATTGTCTTAATATTTCTAA+AGG | - | chr1.4:45345878-45345897 | None:intergenic | 15.0% |
| !!! | TAATATTTCTATGTTTTTGA+TGG | + | chr1.4:45344342-45344361 | MS.gene46491:intron | 15.0% |
| !!! | TTTTAATTAGTTTCATGTTT+AGG | + | chr1.4:45343286-45343305 | MS.gene46491:intron | 15.0% |
| !! | AAAAAATTAACTGGAATGTT+AGG | - | chr1.4:45344182-45344201 | None:intergenic | 20.0% |
| !! | AAAAATGTAGTGATTAATGT+TGG | + | chr1.4:45343665-45343684 | MS.gene46491:intron | 20.0% |
| !! | AAAAGGTAGTAGTATATTAA+TGG | - | chr1.4:45345677-45345696 | None:intergenic | 20.0% |
| !! | AATTGAAAATAAAAATGAGC+TGG | - | chr1.4:45345192-45345211 | None:intergenic | 20.0% |
| !! | ATTGAAAATAAAAATGAGCT+GGG | - | chr1.4:45345191-45345210 | None:intergenic | 20.0% |
| !! | CAAGAGATGAAAAAAAATTA+TGG | - | chr1.4:45345995-45346014 | None:intergenic | 20.0% |
| !! | GTATTTGAAAGGAAAAAAAT+TGG | - | chr1.4:45345036-45345055 | None:intergenic | 20.0% |
| !! | GTTATCATAAATAAACACTT+TGG | + | chr1.4:45344316-45344335 | MS.gene46491:intron | 20.0% |
| !! | TCATAAGTCAAAGAATTAAA+AGG | - | chr1.4:45346027-45346046 | None:intergenic | 20.0% |
| !!! | AAATTTTTTCTGGTTTGATA+TGG | + | chr1.4:45344446-45344465 | MS.gene46491:intron | 20.0% |
| !!! | ATGAATAATTTGTTTCCTAT+TGG | + | chr1.4:45345110-45345129 | MS.gene46491:intron | 20.0% |
| !!! | ATGAATATTTGTTTTCCTAT+TGG | + | chr1.4:45344776-45344795 | MS.gene46491:intron | 20.0% |
| !!! | TTTGTTGAAATTTTTGTAGT+TGG | + | chr1.4:45343375-45343394 | MS.gene46491:intron | 20.0% |
| !!! | TTTTATTTTCTGGTTTGATA+TGG | + | chr1.4:45344074-45344093 | MS.gene46491:intron | 20.0% |
| !!! | TTTTGTTATTCCAGATTATT+TGG | + | chr1.4:45343502-45343521 | MS.gene46491:intron | 20.0% |
| ! | AAAAAAAGAACAACCTAATC+AGG | - | chr1.4:45344426-45344445 | None:intergenic | 25.0% |
| ! | ATCAGATCCAAATTCAAAAA+AGG | - | chr1.4:45345694-45345713 | None:intergenic | 25.0% |
| ! | ATGAATATTTGTTTCCCTAT+TGG | + | chr1.4:45344480-45344499 | MS.gene46491:intron | 25.0% |
| ! | ATTTGTGTATTACTTGTGAT+TGG | + | chr1.4:45345516-45345535 | MS.gene46491:intron | 25.0% |
| ! | CATTACTAACGAAACATAAA+GGG | - | chr1.4:45344247-45344266 | None:intergenic | 25.0% |
| ! | CTTTACTAATGAAACATATG+AGG | - | chr1.4:45344632-45344651 | None:intergenic | 25.0% |
| ! | TAAAACAAATTGCATCATTC+TGG | - | chr1.4:45344514-45344533 | None:intergenic | 25.0% |
| ! | TAATTATTGTGATCCTGATT+AGG | + | chr1.4:45344410-45344429 | MS.gene46491:intron | 25.0% |
| ! | TCATTACTAACGAAACATAA+AGG | - | chr1.4:45344248-45344267 | None:intergenic | 25.0% |
| ! | TCTCTTATAAGTAACACAAA+AGG | - | chr1.4:45344943-45344962 | None:intergenic | 25.0% |
| ! | TTCATGAGTTATGATTATCT+TGG | + | chr1.4:45345282-45345301 | MS.gene46491:intron | 25.0% |
| ! | TTCATTAGTAAAGACTGTTA+AGG | + | chr1.4:45344639-45344658 | MS.gene46491:intron | 25.0% |
| !!! | ACTACTACCTTTTTTGAATT+TGG | + | chr1.4:45345684-45345703 | MS.gene46491:intron | 25.0% |
| !!! | ATGAATTTTTGTTTCCCTAT+TGG | + | chr1.4:45344108-45344127 | MS.gene46491:intron | 25.0% |
| AATACAAATTGCCATCATTC+TGG | - | chr1.4:45344810-45344829 | None:intergenic | 30.0% | |
| AATGGCATATTTAAGCAACA+AGG | - | chr1.4:45345548-45345567 | None:intergenic | 30.0% | |
| ACAAGAAACACCAAATAATC+TGG | - | chr1.4:45343515-45343534 | None:intergenic | 30.0% | |
| ATATTAACCCTTTAGACGAT+GGG | - | chr1.4:45345596-45345615 | None:intergenic | 30.0% | |
| ATGATTCACACGTATTTGAA+AGG | - | chr1.4:45345047-45345066 | None:intergenic | 30.0% | |
| GAAACTGCGATAATAAGAAT+CGG | + | chr1.4:45345347-45345366 | MS.gene46491:intron | 30.0% | |
| GAACTTATTAATGCAGCAAA+AGG | + | chr1.4:45345916-45345935 | MS.gene46491:CDS | 30.0% | |
| GTTAATATGGACTTGCAATT+AGG | + | chr1.4:45345608-45345627 | MS.gene46491:intron | 30.0% | |
| TAGTGTTATGATTTACTTGC+TGG | + | chr1.4:45345066-45345085 | MS.gene46491:intron | 30.0% | |
| TGAAATTGAAAGAGTTGCTA+AGG | + | chr1.4:45346089-45346108 | MS.gene46491:CDS | 30.0% | |
| TTATTTACCCATCGTCTAAA+GGG | + | chr1.4:45345586-45345605 | MS.gene46491:intron | 30.0% | |
| TTCGTTAGTAATGATTGTTG+AGG | + | chr1.4:45344254-45344273 | MS.gene46491:intron | 30.0% | |
| ! | ATGATTGGTTATTTCCCTAT+TGG | + | chr1.4:45345381-45345400 | MS.gene46491:intron | 30.0% |
| ! | ATTTGAAAAAGCATACCTGT+TGG | - | chr1.4:45345947-45345966 | None:intergenic | 30.0% |
| ! | TATGAATCGTTGATTGTTGA+TGG | + | chr1.4:45343981-45344000 | MS.gene46491:intron | 30.0% |
| !! | AGATTACTGATTTGTCTCTT+GGG | + | chr1.4:45343709-45343728 | MS.gene46491:intron | 30.0% |
| !!! | TATTTTCTGGTTTGATATGG+AGG | + | chr1.4:45344077-45344096 | MS.gene46491:intron | 30.0% |
| AAAAAATGGCCTAGAATGTC+AGG | - | chr1.4:45344852-45344871 | None:intergenic | 35.0% | |
| AAGCTGGAATGATATGAGAA+TGG | - | chr1.4:45344548-45344567 | None:intergenic | 35.0% | |
| AATGAGCTGGGAAATAAGAA+TGG | - | chr1.4:45345179-45345198 | None:intergenic | 35.0% | |
| ACCAGTAGTTAGAAGATAGA+TGG | - | chr1.4:45345842-45345861 | None:intergenic | 35.0% | |
| ATACATAAGTGCCATCATCA+AGG | - | chr1.4:45345415-45345434 | None:intergenic | 35.0% | |
| ATCAAGGCAATCAAACCAAT+AGG | - | chr1.4:45345399-45345418 | None:intergenic | 35.0% | |
| ATGCCATTGTTTACTTTCTG+TGG | + | chr1.4:45345560-45345579 | MS.gene46491:intron | 35.0% | |
| CAACCACAGAAAGTAAACAA+TGG | - | chr1.4:45345566-45345585 | None:intergenic | 35.0% | |
| CAAGTAATACACAAATGACG+AGG | - | chr1.4:45345512-45345531 | None:intergenic | 35.0% | |
| CATATTAACCCTTTAGACGA+TGG | - | chr1.4:45345597-45345616 | None:intergenic | 35.0% | |
| CATCAACAATGACCTGAATT+GGG | - | chr1.4:45343947-45343966 | None:intergenic | 35.0% | |
| CATCGTCTAAAGGGTTAATA+TGG | + | chr1.4:45345595-45345614 | MS.gene46491:intron | 35.0% | |
| GAACAATGGAAAGAAGCTTA+TGG | + | chr1.4:45343866-45343885 | MS.gene46491:CDS | 35.0% | |
| GTTATTTACCCATCGTCTAA+AGG | + | chr1.4:45345585-45345604 | MS.gene46491:intron | 35.0% | |
| TAACTGGAATGTTAGGAGAA+TGG | - | chr1.4:45344175-45344194 | None:intergenic | 35.0% | |
| TCAAGGCAATCAAACCAATA+GGG | - | chr1.4:45345398-45345417 | None:intergenic | 35.0% | |
| TGGAACATATGTTGCATGTT+TGG | - | chr1.4:45343754-45343773 | None:intergenic | 35.0% | |
| TGTTTGTGTATTTGTCGTGA+TGG | + | chr1.4:45344732-45344751 | MS.gene46491:intron | 35.0% | |
| !! | CAGATTACTGATTTGTCTCT+TGG | + | chr1.4:45343708-45343727 | MS.gene46491:intron | 35.0% |
| !! | GATTACTGATTTGTCTCTTG+GGG | + | chr1.4:45343710-45343729 | MS.gene46491:intron | 35.0% |
| !! | TCTATGTTTTTGATGGCTGT+AGG | + | chr1.4:45344349-45344368 | MS.gene46491:intron | 35.0% |
| !! | TTCTGGTTTGATATGGTGAA+TGG | + | chr1.4:45344453-45344472 | MS.gene46491:intron | 35.0% |
| AATACAAGCTGCCATCATTC+TGG | - | chr1.4:45345144-45345163 | None:intergenic | 40.0% | |
| ACTAACTCTCTCATGATGCA+TGG | + | chr1.4:45343840-45343859 | MS.gene46491:CDS | 40.0% | |
| ACTCTTGCAGTCAAACCAAT+AGG | - | chr1.4:45344126-45344145 | None:intergenic | 40.0% | |
| ATTCTGGCAGTCAAACCAAT+AGG | - | chr1.4:45344498-45344517 | None:intergenic | 40.0% | |
| CATACACAAGACAGATCTCA+CGG | - | chr1.4:45344390-45344409 | None:intergenic | 40.0% | |
| CTAACTCTCTCATGATGCAT+GGG | + | chr1.4:45343841-45343860 | MS.gene46491:CDS | 40.0% | |
| CTCTTGCAGTCAAACCAATA+GGG | - | chr1.4:45344125-45344144 | None:intergenic | 40.0% | |
| GAAAGAAGCTTATGGCTGTT+AGG | + | chr1.4:45343874-45343893 | MS.gene46491:CDS | 40.0% | |
| GCATCAACAATGACCTGAAT+TGG | - | chr1.4:45343948-45343967 | None:intergenic | 40.0% | |
| GCCATCTATCTTCTAACTAC+TGG | + | chr1.4:45345838-45345857 | MS.gene46491:CDS | 40.0% | |
| TAGGATCATCAAGCATGCTA+TGG | + | chr1.4:45343893-45343912 | MS.gene46491:CDS | 40.0% | |
| TCGGAGAATGACATGATGAT+TGG | + | chr1.4:45345366-45345385 | MS.gene46491:intron | 40.0% | |
| TGATGGCTTAGAATGGAGAA+TGG | + | chr1.4:45344749-45344768 | MS.gene46491:intron | 40.0% | |
| TGGTTTGATTGCCTTGATGA+TGG | + | chr1.4:45345401-45345420 | MS.gene46491:intron | 40.0% | |
| TTAGTGAGCCTCTCAACAAT+GGG | - | chr1.4:45343825-45343844 | None:intergenic | 40.0% | |
| TTCTGGCAGTCAAACCAATA+GGG | - | chr1.4:45344497-45344516 | None:intergenic | 40.0% | |
| TTCTTCAATGACATCAGCCA+TGG | - | chr1.4:45343161-45343180 | None:intergenic | 40.0% | |
| TTGTCTCTTGGGGATTACAT+TGG | + | chr1.4:45343720-45343739 | MS.gene46491:CDS | 40.0% | |
| TTTGTCGTGATGGCTTAGAA+TGG | + | chr1.4:45344742-45344761 | MS.gene46491:intron | 40.0% | |
| !! | TACTTGCTGGCTTGATTTGA+AGG | + | chr1.4:45345079-45345098 | MS.gene46491:intron | 40.0% |
| !! | TTCTGGTTTGATATGGAGGA+TGG | + | chr1.4:45344081-45344100 | MS.gene46491:intron | 40.0% |
| ACATATGTTCCACACACTGC+TGG | + | chr1.4:45343762-45343781 | MS.gene46491:CDS | 45.0% | |
| AGCTTGACTTCGATCAGGTT+TGG | - | chr1.4:45343205-45343224 | None:intergenic | 45.0% | |
| AGTTGTAAGAAGACAGGCTG+TGG | + | chr1.4:45345786-45345805 | MS.gene46491:CDS | 45.0% | |
| ATACGAGTAGCATCTTCACG+AGG | - | chr1.4:45345754-45345773 | None:intergenic | 45.0% | |
| ATGATGCATGGGAGGAACAA+TGG | + | chr1.4:45343852-45343871 | MS.gene46491:CDS | 45.0% | |
| ATTCTGGCGGTCAAACCAAT+AGG | - | chr1.4:45345128-45345147 | None:intergenic | 45.0% | |
| CAATGACCTGAATTGGGTTC+TGG | - | chr1.4:45343941-45343960 | None:intergenic | 45.0% | |
| CACTTGTGTCCTTTGTACAG+TGG | + | chr1.4:45345727-45345746 | MS.gene46491:intron | 45.0% | |
| CAGCAAAAGGATCATCCAAC+AGG | + | chr1.4:45345929-45345948 | MS.gene46491:CDS | 45.0% | |
| CGTGAAGATGCTACTCGTAT+TGG | + | chr1.4:45345754-45345773 | MS.gene46491:CDS | 45.0% | |
| GACCATTCTCCTGACATTCT+AGG | + | chr1.4:45344840-45344859 | MS.gene46491:intron | 45.0% | |
| GATACTCGAAGAAGCGATTC+AGG | + | chr1.4:45343787-45343806 | MS.gene46491:CDS | 45.0% | |
| GTTAGTGAGCCTCTCAACAA+TGG | - | chr1.4:45343826-45343845 | None:intergenic | 45.0% | |
| TGAAGAGCTTGACTTCGATC+AGG | - | chr1.4:45343210-45343229 | None:intergenic | 45.0% | |
| TGCTGGAGTTGTAAGAAGAC+AGG | + | chr1.4:45345780-45345799 | MS.gene46491:CDS | 45.0% | |
| TGGTTTGACTGCCAGAATGA+TGG | + | chr1.4:45344500-45344519 | MS.gene46491:intron | 45.0% | |
| TTGTTGATGCTGTCGTCAAC+AGG | + | chr1.4:45343958-45343977 | MS.gene46491:CDS | 45.0% | |
| !! | TGCTGGCTTGATTTGAAGGA+TGG | + | chr1.4:45345083-45345102 | MS.gene46491:intron | 45.0% |
| !! | AAAAAATTATTTCAATTAAT+TGG | + | chr1.4:45343617-45343636 | MS.gene46491:intron | 5.0% |
| !!! | TTTTATTAGATATAAAAAAA+TGG | - | chr1.4:45344866-45344885 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTATTTTATTTTC+TGG | + | chr1.4:45344064-45344083 | MS.gene46491:intron | 5.0% |
| AACCGACCAGAACCCAATTC+AGG | + | chr1.4:45343932-45343951 | MS.gene46491:CDS | 50.0% | |
| AAGTCAAGCTCTTCAACCGC+TGG | + | chr1.4:45343215-45343234 | MS.gene46491:CDS | 50.0% | |
| ACAAGCTGCCATCATTCTGG+CGG | - | chr1.4:45345141-45345160 | None:intergenic | 50.0% | |
| ACTCTCTCATGATGCATGGG+AGG | + | chr1.4:45343844-45343863 | MS.gene46491:CDS | 50.0% | |
| CTCAGTGTCCCATTGTTGAG+AGG | + | chr1.4:45343814-45343833 | MS.gene46491:CDS | 50.0% | |
| GAGTATCTACCAGCAGTGTG+TGG | - | chr1.4:45343774-45343793 | None:intergenic | 50.0% | |
| GCTTGATTCACACGACGAAG+GGG | - | chr1.4:45345820-45345839 | None:intergenic | 50.0% | |
| GGCCTAGAATGTCAGGAGAA+TGG | - | chr1.4:45344845-45344864 | None:intergenic | 50.0% | |
| GGCTTGATTCACACGACGAA+GGG | - | chr1.4:45345821-45345840 | None:intergenic | 50.0% | |
| TCACGAGGACCACTGTACAA+AGG | - | chr1.4:45345739-45345758 | None:intergenic | 50.0% | |
| TGGCTTGATTCACACGACGA+AGG | - | chr1.4:45345822-45345841 | None:intergenic | 50.0% | |
| TGGTTTGACCGCCAGAATGA+TGG | + | chr1.4:45345130-45345149 | MS.gene46491:intron | 50.0% | |
| ! | GACCTGAATTGGGTTCTGGT+CGG | - | chr1.4:45343937-45343956 | None:intergenic | 50.0% |
| ! | GGATCTGAAACGACTGCAAC+AGG | - | chr1.4:45343184-45343203 | None:intergenic | 50.0% |
| !! | GCTACTCGTATTGGTTCTGC+TGG | + | chr1.4:45345763-45345782 | MS.gene46491:CDS | 50.0% |
| CTGGAGCTTCGATGACGTTC+AGG | + | chr1.4:45343234-45343253 | MS.gene46491:CDS | 55.0% | |
| GAACGTCATCGAAGCTCCAG+CGG | - | chr1.4:45343234-45343253 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 45343158 | 45346122 | 45343158 | ID=MS.gene46491 |
| chr1.4 | mRNA | 45343158 | 45346122 | 45343158 | ID=MS.gene46491.t1;Parent=MS.gene46491 |
| chr1.4 | exon | 45343158 | 45343255 | 45343158 | ID=MS.gene46491.t1.exon1;Parent=MS.gene46491.t1 |
| chr1.4 | CDS | 45343158 | 45343255 | 45343158 | ID=cds.MS.gene46491.t1;Parent=MS.gene46491.t1 |
| chr1.4 | exon | 45343711 | 45343979 | 45343711 | ID=MS.gene46491.t1.exon2;Parent=MS.gene46491.t1 |
| chr1.4 | CDS | 45343711 | 45343979 | 45343711 | ID=cds.MS.gene46491.t1;Parent=MS.gene46491.t1 |
| chr1.4 | exon | 45345747 | 45345950 | 45345747 | ID=MS.gene46491.t1.exon3;Parent=MS.gene46491.t1 |
| chr1.4 | CDS | 45345747 | 45345950 | 45345747 | ID=cds.MS.gene46491.t1;Parent=MS.gene46491.t1 |
| chr1.4 | exon | 45346068 | 45346122 | 45346068 | ID=MS.gene46491.t1.exon4;Parent=MS.gene46491.t1 |
| chr1.4 | CDS | 45346068 | 45346122 | 45346068 | ID=cds.MS.gene46491.t1;Parent=MS.gene46491.t1 |
| Gene Sequence |
| Protein sequence |
