Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47723.t1 | AIT98180.1 | 99.2 | 359 | 3 | 0 | 1 | 359 | 30 | 388 | 1.20E-204 | 722.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47723.t1 | Q9SSU8 | 75.7 | 350 | 74 | 1 | 12 | 350 | 45 | 394 | 1.6e-154 | 547.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47723.t1 | A0A097KXR7 | 99.2 | 359 | 3 | 0 | 1 | 359 | 30 | 388 | 8.3e-205 | 722.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049369 | MS.gene47723 | 0.821952 | 3.07E-53 | -1.69E-46 |
| MS.gene049396 | MS.gene47723 | 0.845034 | 5.22E-59 | -1.69E-46 |
| MS.gene053449 | MS.gene47723 | 0.802186 | 6.32E-49 | -1.69E-46 |
| MS.gene05505 | MS.gene47723 | 0.801964 | 7.02E-49 | -1.69E-46 |
| MS.gene05592 | MS.gene47723 | 0.815868 | 7.41E-52 | -1.69E-46 |
| MS.gene056236 | MS.gene47723 | 0.807142 | 5.84E-50 | -1.69E-46 |
| MS.gene056422 | MS.gene47723 | 0.845533 | 3.83E-59 | -1.69E-46 |
| MS.gene056511 | MS.gene47723 | 0.801654 | 8.13E-49 | -1.69E-46 |
| MS.gene057668 | MS.gene47723 | 0.811851 | 5.69E-51 | -1.69E-46 |
| MS.gene057926 | MS.gene47723 | 0.830712 | 2.52E-55 | -1.69E-46 |
| MS.gene058075 | MS.gene47723 | 0.838088 | 3.54E-57 | -1.69E-46 |
| MS.gene058459 | MS.gene47723 | 0.846895 | 1.63E-59 | -1.69E-46 |
| MS.gene059711 | MS.gene47723 | 0.857548 | 1.51E-62 | -1.69E-46 |
| MS.gene059807 | MS.gene47723 | 0.829378 | 5.32E-55 | -1.69E-46 |
| MS.gene060804 | MS.gene47723 | 0.806641 | 7.45E-50 | -1.69E-46 |
| MS.gene060818 | MS.gene47723 | 0.809929 | 1.48E-50 | -1.69E-46 |
| MS.gene061041 | MS.gene47723 | 0.818349 | 2.05E-52 | -1.69E-46 |
| MS.gene061134 | MS.gene47723 | 0.829637 | 4.61E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47723.t1 | MTR_5g090780 | 96.100 | 359 | 14 | 0 | 1 | 359 | 30 | 388 | 0.0 | 721 |
| MS.gene47723.t1 | MTR_3g450510 | 84.530 | 362 | 48 | 2 | 3 | 359 | 37 | 395 | 0.0 | 631 |
| MS.gene47723.t1 | MTR_5g076620 | 75.148 | 338 | 80 | 2 | 16 | 352 | 95 | 429 | 0.0 | 531 |
| MS.gene47723.t1 | MTR_5g076620 | 75.087 | 289 | 68 | 2 | 15 | 302 | 94 | 379 | 4.60e-160 | 454 |
| MS.gene47723.t1 | MTR_3g083630 | 64.329 | 328 | 109 | 2 | 24 | 351 | 57 | 376 | 7.39e-156 | 443 |
| MS.gene47723.t1 | MTR_3g083650 | 61.972 | 71 | 27 | 0 | 88 | 158 | 1 | 71 | 2.71e-25 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47723.t1 | AT5G17230 | 76.657 | 347 | 70 | 3 | 10 | 348 | 70 | 413 | 0.0 | 549 |
| MS.gene47723.t1 | AT5G17230 | 76.657 | 347 | 70 | 3 | 10 | 348 | 70 | 413 | 0.0 | 549 |
| MS.gene47723.t1 | AT5G17230 | 76.657 | 347 | 70 | 3 | 10 | 348 | 70 | 413 | 0.0 | 549 |
| MS.gene47723.t1 | AT5G17230 | 73.481 | 362 | 70 | 4 | 10 | 348 | 70 | 428 | 0.0 | 539 |
Find 75 sgRNAs with CRISPR-Local
Find 207 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATAATAACTTCACAAAA+AGG | 0.232010 | 5.3:-73008580 | MS.gene47723:CDS |
| GCATCATCTCATAAACAATT+TGG | 0.245018 | 5.3:+73008478 | None:intergenic |
| CTTTATTGTTACTATGTTGC+TGG | 0.254005 | 5.3:-73009685 | MS.gene47723:CDS |
| TCATGAAGGGACAAATAAAA+AGG | 0.256763 | 5.3:-73008724 | MS.gene47723:CDS |
| TCTGTAGAAGCCTTGGATTC+AGG | 0.303642 | 5.3:+73009622 | None:intergenic |
| TAAGTACCCTGTTGATATTC+AGG | 0.310562 | 5.3:-73010400 | MS.gene47723:intron |
| AAGAACGCCGAAAAGCTATA+TGG | 0.335633 | 5.3:-73010720 | MS.gene47723:CDS |
| TGTGAAGTTATTATAATCAT+TGG | 0.341584 | 5.3:+73008586 | None:intergenic |
| TTATCACTACCAGCTGCTTA+TGG | 0.342219 | 5.3:-73008530 | MS.gene47723:CDS |
| TCAGGTGCTATTCCCATTAC+AGG | 0.342367 | 5.3:+73009640 | None:intergenic |
| GTTCTTTGATGAAGCAGAAA+AGG | 0.373517 | 5.3:-73008693 | MS.gene47723:CDS |
| AGAGTGTAACAATGGGTTCT+AGG | 0.375073 | 5.3:-73012087 | None:intergenic |
| CTCTCCTCTGAACTTCTTGA+AGG | 0.380334 | 5.3:+73012028 | None:intergenic |
| AAAGCTATATGGGCAATCTA+TGG | 0.391917 | 5.3:-73010709 | MS.gene47723:intron |
| GTGTGATGTGTGAAGCATTT+GGG | 0.394039 | 5.3:+73010517 | None:intergenic |
| CCATTCAAGGACATGATAGA+AGG | 0.398564 | 5.3:-73009760 | MS.gene47723:CDS |
| GGGCAGCATTGTTGTTATAT+AGG | 0.404583 | 5.3:-73008631 | MS.gene47723:CDS |
| TGAAGTACCTGAATATCAAC+AGG | 0.410981 | 5.3:+73010393 | None:intergenic |
| GGTGTGATGTGTGAAGCATT+TGG | 0.411963 | 5.3:+73010516 | None:intergenic |
| TAACAATGGGTTCTAGGATA+AGG | 0.417329 | 5.3:-73012081 | None:intergenic |
| ATGGGTTCTAGGATAAGGTT+TGG | 0.418446 | 5.3:-73012076 | MS.gene47723:CDS |
| TCCCATCTGTCCAAGGCTGC+TGG | 0.419670 | 5.3:+73010495 | None:intergenic |
| CTTATGAGTGTTCCTGTAAT+GGG | 0.421342 | 5.3:-73009652 | MS.gene47723:CDS |
| GCATAATGTCTTCATCTGAT+AGG | 0.425370 | 5.3:+73008777 | None:intergenic |
| TTTATTGTTACTATGTTGCT+GGG | 0.438390 | 5.3:-73009684 | MS.gene47723:CDS |
| TAGGATAAGGTTTGGAAGTG+GGG | 0.438574 | 5.3:-73012068 | MS.gene47723:CDS |
| AGCTCAGTTCTGCTAGTAGA+TGG | 0.444906 | 5.3:-73008661 | MS.gene47723:CDS |
| CTAGGATAAGGTTTGGAAGT+GGG | 0.447585 | 5.3:-73012069 | MS.gene47723:CDS |
| TCTTATGAGTGTTCCTGTAA+TGG | 0.447627 | 5.3:-73009653 | MS.gene47723:CDS |
| CAGCAACATAGTAACAATAA+AGG | 0.448850 | 5.3:+73009686 | None:intergenic |
| GCAGCATCAAACATATCATA+TGG | 0.464921 | 5.3:+73010441 | None:intergenic |
| TTATTTGAAATAGCCATTCA+AGG | 0.465866 | 5.3:-73009773 | MS.gene47723:intron |
| CCTTCTATCATGTCCTTGAA+TGG | 0.471429 | 5.3:+73009760 | None:intergenic |
| CACCAGCAGCCTTGGACAGA+TGG | 0.481447 | 5.3:-73010497 | MS.gene47723:CDS |
| TTTGGTGAGAGAAGATAGGA+GGG | 0.481973 | 5.3:-73011975 | MS.gene47723:CDS |
| AATGCTCTCTGTAGAAGCCT+TGG | 0.487506 | 5.3:+73009615 | None:intergenic |
| TTCTTTGATGAAGCAGAAAA+GGG | 0.493216 | 5.3:-73008692 | MS.gene47723:CDS |
| TGCTAGTAGATGGCCTGTGT+GGG | 0.498713 | 5.3:-73008651 | MS.gene47723:CDS |
| AGAACGCCGAAAAGCTATAT+GGG | 0.501743 | 5.3:-73010719 | MS.gene47723:CDS |
| ACACATCACACCAGCAGCCT+TGG | 0.504549 | 5.3:-73010505 | MS.gene47723:CDS |
| TCTAGGATAAGGTTTGGAAG+TGG | 0.507067 | 5.3:-73012070 | MS.gene47723:CDS |
| AGAACTGATGAACTAGTAGA+TGG | 0.508686 | 5.3:-73010540 | MS.gene47723:CDS |
| GAGCATTTATAATGCTGCAT+TGG | 0.509388 | 5.3:-73009599 | MS.gene47723:CDS |
| CATGATAGAAGGGATGAGGA+TGG | 0.512203 | 5.3:-73009749 | MS.gene47723:CDS |
| TTCAAGAAGTTCAGAGGAGA+GGG | 0.515940 | 5.3:-73012026 | MS.gene47723:CDS |
| TATAATGCTGCATTGGCACT+AGG | 0.516591 | 5.3:-73009592 | MS.gene47723:CDS |
| TATTGAATTCTGCTTATGAT+CGG | 0.518807 | 5.3:-73011892 | MS.gene47723:CDS |
| TACTATGTTGCTGGGACAGT+AGG | 0.527506 | 5.3:-73009676 | MS.gene47723:CDS |
| CTTGTGCTAGCTCATCTTGA+GGG | 0.529549 | 5.3:+73008804 | None:intergenic |
| ACCAGCAGCCTTGGACAGAT+GGG | 0.533995 | 5.3:-73010496 | MS.gene47723:CDS |
| ACCAATGTACTCAGAGATGT+TGG | 0.536558 | 5.3:-73009553 | MS.gene47723:CDS |
| CAGGTTTGGTGAGAGAAGAT+AGG | 0.541572 | 5.3:-73011979 | MS.gene47723:CDS |
| GTTTGGTGAGAGAAGATAGG+AGG | 0.542876 | 5.3:-73011976 | MS.gene47723:CDS |
| GTGGAAAAGTAACAGACAAA+TGG | 0.545459 | 5.3:-73008754 | MS.gene47723:CDS |
| CAAGATGAGCTAGCACAAGC+TGG | 0.546911 | 5.3:-73008800 | MS.gene47723:CDS |
| CATTCAAGGACATGATAGAA+GGG | 0.552755 | 5.3:-73009759 | MS.gene47723:CDS |
| CTGCTAGTAGATGGCCTGTG+TGG | 0.559580 | 5.3:-73008652 | MS.gene47723:CDS |
| GGGAATAGCACCTGAATCCA+AGG | 0.561665 | 5.3:-73009632 | MS.gene47723:CDS |
| CAAATGGAGAAATTTCATGA+AGG | 0.564295 | 5.3:-73008738 | MS.gene47723:CDS |
| AGGACATGATAGAAGGGATG+AGG | 0.567252 | 5.3:-73009753 | MS.gene47723:CDS |
| CCGTTGCTCCCATCTGTCCA+AGG | 0.572170 | 5.3:+73010488 | None:intergenic |
| GCTTGTGCTAGCTCATCTTG+AGG | 0.572873 | 5.3:+73008803 | None:intergenic |
| AAATGGAGAAATTTCATGAA+GGG | 0.583483 | 5.3:-73008737 | MS.gene47723:CDS |
| AGGATAAGGTTTGGAAGTGG+GGG | 0.586634 | 5.3:-73012067 | MS.gene47723:CDS |
| AGTGCAGTTCCATAAGCAGC+TGG | 0.587800 | 5.3:+73008521 | None:intergenic |
| TCCAACATCTCTGAGTACAT+TGG | 0.600376 | 5.3:+73009552 | None:intergenic |
| CTTCAAGAAGTTCAGAGGAG+AGG | 0.613107 | 5.3:-73012027 | MS.gene47723:CDS |
| AGAACCTTCAAGAAGTTCAG+AGG | 0.614687 | 5.3:-73012032 | MS.gene47723:CDS |
| CCTTGGACAGATGGGAGCAA+CGG | 0.633759 | 5.3:-73010488 | MS.gene47723:CDS |
| GATTATGATAGTGCTACAAG+AGG | 0.634461 | 5.3:-73008839 | MS.gene47723:intron |
| AACAACAATGCTGCCCACAC+AGG | 0.638058 | 5.3:+73008638 | None:intergenic |
| TCAGATGAAGACATTATGCG+TGG | 0.650440 | 5.3:-73008773 | MS.gene47723:CDS |
| TTGGTGAGAGAAGATAGGAG+GGG | 0.683654 | 5.3:-73011974 | MS.gene47723:CDS |
| AATTCTGCTTATGATCGGTG+TGG | 0.729934 | 5.3:-73011887 | MS.gene47723:CDS |
| GAAGTACCTGAATATCAACA+GGG | 0.777322 | 5.3:+73010394 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACAATAGTTAAATAAAA+AGG | - | chr5.3:73011409-73011428 | MS.gene47723:intron | 10.0% |
| !!! | ATTCTCATTTTTTTTTTTTT+TGG | - | chr5.3:73008754-73008773 | MS.gene47723:CDS | 10.0% |
| !!! | ATTTCTCTTTTTATTTAATA+CGG | - | chr5.3:73011231-73011250 | MS.gene47723:intron | 10.0% |
| !!! | GAATGTTATTTTTATTTTTT+TGG | + | chr5.3:73009925-73009944 | None:intergenic | 10.0% |
| !! | ATTATAATAACTTCACAAAA+AGG | - | chr5.3:73011977-73011996 | MS.gene47723:CDS | 15.0% |
| !! | GATTAAATTCAATTGAATAT+TGG | + | chr5.3:73008823-73008842 | None:intergenic | 15.0% |
| !! | TTATAATAACTTCACAAAAA+GGG | - | chr5.3:73011978-73011997 | MS.gene47723:CDS | 15.0% |
| !!! | AAATATTTTGTTGTGTTTAA+TGG | + | chr5.3:73009520-73009539 | None:intergenic | 15.0% |
| !!! | AAGTGAATTTTTTTAGTTTT+TGG | + | chr5.3:73010376-73010395 | None:intergenic | 15.0% |
| !!! | GAAAAAATAAACATTTTCAA+TGG | + | chr5.3:73009342-73009361 | None:intergenic | 15.0% |
| !!! | TGAAAATGTTTATTTTTTCA+TGG | - | chr5.3:73009343-73009362 | MS.gene47723:intron | 15.0% |
| !!! | TTATTTTACACTTAATTGAA+TGG | - | chr5.3:73009032-73009051 | MS.gene47723:intron | 15.0% |
| !!! | TTGAAATAGTATATAGTTTT+TGG | + | chr5.3:73011073-73011092 | None:intergenic | 15.0% |
| !!! | TTTCTCTTTTTATTTAATAC+GGG | - | chr5.3:73011232-73011251 | MS.gene47723:intron | 15.0% |
| !! | AAAATTGATCTTATTGACAT+TGG | - | chr5.3:73010756-73010775 | MS.gene47723:intron | 20.0% |
| !! | AATTCCAAACCAAAAAAAAA+AGG | + | chr5.3:73009963-73009982 | None:intergenic | 20.0% |
| !! | ACATCAAAATACATTATTGA+AGG | + | chr5.3:73009661-73009680 | None:intergenic | 20.0% |
| !! | ATCTTTCAATTGTACAATTT+AGG | - | chr5.3:73009797-73009816 | MS.gene47723:intron | 20.0% |
| !! | CATCAAAATACATTATTGAA+GGG | + | chr5.3:73009660-73009679 | None:intergenic | 20.0% |
| !! | GATAATGCATAATATATGAA+AGG | - | chr5.3:73010325-73010344 | MS.gene47723:intron | 20.0% |
| !! | TAGAAAATAAAACTTCTATC+TGG | + | chr5.3:73009465-73009484 | None:intergenic | 20.0% |
| !! | TATATGAAACATGTAATGTA+AGG | + | chr5.3:73010218-73010237 | None:intergenic | 20.0% |
| !! | TGAAATTAAATTCCTTTCTT+GGG | - | chr5.3:73011287-73011306 | MS.gene47723:intron | 20.0% |
| !! | TGTGAAGTTATTATAATCAT+TGG | + | chr5.3:73011974-73011993 | None:intergenic | 20.0% |
| !! | TTGAAATTAAATTCCTTTCT+TGG | - | chr5.3:73011286-73011305 | MS.gene47723:intron | 20.0% |
| !!! | AAAATCAAAGTTGATTTTAG+AGG | - | chr5.3:73010447-73010466 | MS.gene47723:CDS | 20.0% |
| !!! | AACAATTTGGTTAACTTTTT+AGG | + | chr5.3:73012069-73012088 | None:intergenic | 20.0% |
| !!! | AAGGTTGAGATTTAAATTTT+AGG | + | chr5.3:73010199-73010218 | None:intergenic | 20.0% |
| !!! | ATAATGTATTGACAAATTCA+TGG | + | chr5.3:73011515-73011534 | None:intergenic | 20.0% |
| !!! | CAATAATGTATTTTGATGTT+AGG | - | chr5.3:73009662-73009681 | MS.gene47723:CDS | 20.0% |
| !!! | CTATTAAGTCCTTTTTTTTT+TGG | - | chr5.3:73009951-73009970 | MS.gene47723:intron | 20.0% |
| !!! | GAAGTTATTTCAATTAAGTT+AGG | - | chr5.3:73009614-73009633 | MS.gene47723:CDS | 20.0% |
| !!! | GTATTTTGGAGTATATTTTT+TGG | - | chr5.3:73009715-73009734 | MS.gene47723:CDS | 20.0% |
| !!! | TATATTTTTTGGATGGATTT+GGG | - | chr5.3:73009726-73009745 | MS.gene47723:CDS | 20.0% |
| !!! | TGAATTTTTTTAGTTTTTGG+TGG | + | chr5.3:73010373-73010392 | None:intergenic | 20.0% |
| !!! | TTGATGATGATATCATAATT+TGG | + | chr5.3:73009902-73009921 | None:intergenic | 20.0% |
| ! | AAATGGAGAAATTTCATGAA+GGG | - | chr5.3:73011820-73011839 | MS.gene47723:intron | 25.0% |
| ! | ACAATTAAGTGTGTGAATTT+CGG | + | chr5.3:73010570-73010589 | None:intergenic | 25.0% |
| ! | AGAAAGAAAGAAAAATACCT+AGG | + | chr5.3:73008729-73008748 | None:intergenic | 25.0% |
| ! | ATAATGCATTAGATAACAGA+GGG | - | chr5.3:73009389-73009408 | MS.gene47723:intron | 25.0% |
| ! | ATGAACCTAATTAAAGTCAT+TGG | + | chr5.3:73011545-73011564 | None:intergenic | 25.0% |
| ! | ATTGGAAATTCTGAATATTG+TGG | + | chr5.3:73008805-73008824 | None:intergenic | 25.0% |
| ! | CAATATCGATAATGTTAAGT+TGG | + | chr5.3:73010625-73010644 | None:intergenic | 25.0% |
| ! | CTAAAAAAAACAATTGTGTG+TGG | + | chr5.3:73010508-73010527 | None:intergenic | 25.0% |
| ! | CTTAATACCTTCTAACTAAA+GGG | - | chr5.3:73011348-73011367 | MS.gene47723:intron | 25.0% |
| ! | GAAATTAAATTCCTTTCTTG+GGG | - | chr5.3:73011288-73011307 | MS.gene47723:intron | 25.0% |
| ! | TATAATGCATTAGATAACAG+AGG | - | chr5.3:73009388-73009407 | MS.gene47723:intron | 25.0% |
| ! | TATTGAATTCTGCTTATGAT+CGG | - | chr5.3:73008665-73008684 | MS.gene47723:CDS | 25.0% |
| ! | TCTTAATACCTTCTAACTAA+AGG | - | chr5.3:73011347-73011366 | MS.gene47723:intron | 25.0% |
| ! | TGAACCTAATTAAAGTCATT+GGG | + | chr5.3:73011544-73011563 | None:intergenic | 25.0% |
| ! | TTTATTGTTACTATGTTGCT+GGG | - | chr5.3:73010873-73010892 | MS.gene47723:intron | 25.0% |
| !! | ATTTTTCGTAAGTTTCATTG+GGG | - | chr5.3:73008844-73008863 | MS.gene47723:intron | 25.0% |
| !! | CATTTTTCGTAAGTTTCATT+GGG | - | chr5.3:73008843-73008862 | MS.gene47723:intron | 25.0% |
| !! | TTATTTGAAATAGCCATTCA+AGG | - | chr5.3:73010784-73010803 | MS.gene47723:intron | 25.0% |
| !! | TTTTCCCAATGACTTTAATT+AGG | - | chr5.3:73011537-73011556 | MS.gene47723:intron | 25.0% |
| !!! | AAATCAACTTTGATTTTTCG+TGG | + | chr5.3:73010444-73010463 | None:intergenic | 25.0% |
| !!! | AAGTCCTTTTTTTTTTGGTT+TGG | - | chr5.3:73009956-73009975 | MS.gene47723:intron | 25.0% |
| !!! | AATCAACTTTGATTTTTCGT+GGG | + | chr5.3:73010443-73010462 | None:intergenic | 25.0% |
| !!! | ATGGAGGAAATTTTAAGTAT+TGG | + | chr5.3:73009501-73009520 | None:intergenic | 25.0% |
| !!! | ATTTTTTTAGTTTTTGGTGG+TGG | + | chr5.3:73010370-73010389 | None:intergenic | 25.0% |
| !!! | CACACACAATTGTTTTTTTT+AGG | - | chr5.3:73010506-73010525 | MS.gene47723:CDS | 25.0% |
| !!! | GATTTTGAGAAAACAATTGA+AGG | - | chr5.3:73008622-73008641 | MS.gene47723:CDS | 25.0% |
| !!! | GTATATTTTTTGGATGGATT+TGG | - | chr5.3:73009725-73009744 | MS.gene47723:CDS | 25.0% |
| !!! | TATTTTGTTGTGTTTAATGG+AGG | + | chr5.3:73009517-73009536 | None:intergenic | 25.0% |
| !!! | TTTGGAGTATATTTTTTGGA+TGG | - | chr5.3:73009719-73009738 | MS.gene47723:CDS | 25.0% |
| AATACCTAGGTAAAAAGTCT+TGG | + | chr5.3:73008716-73008735 | None:intergenic | 30.0% | |
| AATGAGTCAATGGAAGTTAA+AGG | - | chr5.3:73009101-73009120 | MS.gene47723:intron | 30.0% | |
| ACTGAGTCTATGAAAGTTAT+TGG | - | chr5.3:73009075-73009094 | MS.gene47723:intron | 30.0% | |
| ATTAATTTCACCCACGAAAA+AGG | - | chr5.3:73010430-73010449 | MS.gene47723:CDS | 30.0% | |
| ATTGAAGGGTCTATATCAAT+TGG | + | chr5.3:73009646-73009665 | None:intergenic | 30.0% | |
| CAAATGGAGAAATTTCATGA+AGG | - | chr5.3:73011819-73011838 | MS.gene47723:intron | 30.0% | |
| CAGCAACATAGTAACAATAA+AGG | + | chr5.3:73010874-73010893 | None:intergenic | 30.0% | |
| CATAATATATGAAAGGTCTG+AGG | - | chr5.3:73010332-73010351 | MS.gene47723:intron | 30.0% | |
| CATGAAGGGACAAATAAAAA+GGG | - | chr5.3:73011834-73011853 | MS.gene47723:intron | 30.0% | |
| CCAATGAAACTTACGAAAAA+TGG | + | chr5.3:73008845-73008864 | None:intergenic | 30.0% | |
| CTGAGTCTATGAAAGTTATT+GGG | - | chr5.3:73009076-73009095 | MS.gene47723:intron | 30.0% | |
| CTTTATTGTTACTATGTTGC+TGG | - | chr5.3:73010872-73010891 | MS.gene47723:intron | 30.0% | |
| TAAGAAACCAACATGATGTT+CGG | + | chr5.3:73011332-73011351 | None:intergenic | 30.0% | |
| TATGAGACTAATCTTTGAGT+CGG | - | chr5.3:73011195-73011214 | MS.gene47723:intron | 30.0% | |
| TCATGAAGGGACAAATAAAA+AGG | - | chr5.3:73011833-73011852 | MS.gene47723:intron | 30.0% | |
| TCTTCATTCTTGAATATGTG+TGG | + | chr5.3:73008882-73008901 | None:intergenic | 30.0% | |
| TTCTTTGATGAAGCAGAAAA+GGG | - | chr5.3:73011865-73011884 | MS.gene47723:CDS | 30.0% | |
| ! | TGGTTAGATCGTTAGTATTT+TGG | - | chr5.3:73009701-73009720 | MS.gene47723:CDS | 30.0% |
| ! | TTTGTTATATGTAGACGAAG+TGG | - | chr5.3:73010535-73010554 | MS.gene47723:CDS | 30.0% |
| ! | TTTTTCGTAAGTTTCATTGG+GGG | - | chr5.3:73008845-73008864 | MS.gene47723:intron | 30.0% |
| !! | AACGTCAAAGTTGATTTTAG+AGG | - | chr5.3:73010401-73010420 | MS.gene47723:CDS | 30.0% |
| !! | ATTGAAGGTGATTTTAGCAA+TGG | - | chr5.3:73008637-73008656 | MS.gene47723:CDS | 30.0% |
| !! | CCATTTTTCGTAAGTTTCAT+TGG | - | chr5.3:73008842-73008861 | MS.gene47723:intron | 30.0% |
| !! | TCAAAGATTAGTCTCATAGT+GGG | + | chr5.3:73011193-73011212 | None:intergenic | 30.0% |
| AAAGCTATATGGGCAATCTA+TGG | - | chr5.3:73009848-73009867 | MS.gene47723:intron | 35.0% | |
| AAGAAACCAACATGATGTTC+GGG | + | chr5.3:73011331-73011350 | None:intergenic | 35.0% | |
| ACTAAGCATACACTTAGTTG+TGG | + | chr5.3:73010269-73010288 | None:intergenic | 35.0% | |
| AGAACTGATGAACTAGTAGA+TGG | - | chr5.3:73010017-73010036 | MS.gene47723:intron | 35.0% | |
| ATGTTAGGCAAGCAATTAAG+TGG | - | chr5.3:73009677-73009696 | MS.gene47723:CDS | 35.0% | |
| ATTAAGTGTGTGAATTTCGG+CGG | + | chr5.3:73010567-73010586 | None:intergenic | 35.0% | |
| CACACTTAATTGTGAGATTC+CGG | - | chr5.3:73010577-73010596 | MS.gene47723:intron | 35.0% | |
| CATTCAAGGACATGATAGAA+GGG | - | chr5.3:73010798-73010817 | MS.gene47723:intron | 35.0% | |
| CTTATGAGTGTTCCTGTAAT+GGG | - | chr5.3:73010905-73010924 | MS.gene47723:intron | 35.0% | |
| GAGCATTTATAATGCTGCAT+TGG | - | chr5.3:73010958-73010977 | MS.gene47723:intron | 35.0% | |
| GCAGCATCAAACATATCATA+TGG | + | chr5.3:73010119-73010138 | None:intergenic | 35.0% | |
| GCATAATGTCTTCATCTGAT+AGG | + | chr5.3:73011783-73011802 | None:intergenic | 35.0% | |
| GTGGAAAAGTAACAGACAAA+TGG | - | chr5.3:73011803-73011822 | MS.gene47723:intron | 35.0% | |
| GTTCTTTGATGAAGCAGAAA+AGG | - | chr5.3:73011864-73011883 | MS.gene47723:CDS | 35.0% | |
| TAAGTACCCTGTTGATATTC+AGG | - | chr5.3:73010157-73010176 | MS.gene47723:intron | 35.0% | |
| TCGATATTGTCTGTTGAGTT+AGG | - | chr5.3:73010636-73010655 | MS.gene47723:intron | 35.0% | |
| TCTTATGAGTGTTCCTGTAA+TGG | - | chr5.3:73010904-73010923 | MS.gene47723:intron | 35.0% | |
| TTATTGGGAGAATGAGTCAA+TGG | - | chr5.3:73009091-73009110 | MS.gene47723:intron | 35.0% | |
| TTCACAAAAAGGGCTTATGT+TGG | - | chr5.3:73011988-73012007 | MS.gene47723:CDS | 35.0% | |
| TTTCATGGAGTGATTATGAG+AGG | - | chr5.3:73009358-73009377 | MS.gene47723:intron | 35.0% | |
| TTTCATTGTGCATTGCAGTA+TGG | - | chr5.3:73009988-73010007 | MS.gene47723:intron | 35.0% | |
| ! | AGATTGCCCATATAGCTTTT+CGG | + | chr5.3:73009847-73009866 | None:intergenic | 35.0% |
| ! | GAAGTACCTGAATATCAACA+GGG | + | chr5.3:73010166-73010185 | None:intergenic | 35.0% |
| ! | GATTATGATAGTGCTACAAG+AGG | - | chr5.3:73011718-73011737 | MS.gene47723:intron | 35.0% |
| ! | TATGCCAAGACTTTTTACCT+AGG | - | chr5.3:73008709-73008728 | MS.gene47723:CDS | 35.0% |
| ! | TGAAGTACCTGAATATCAAC+AGG | + | chr5.3:73010167-73010186 | None:intergenic | 35.0% |
| !! | CTCAAAGATTAGTCTCATAG+TGG | + | chr5.3:73011194-73011213 | None:intergenic | 35.0% |
| !! | GAGTTGATAGAAAACGATGA+TGG | + | chr5.3:73009437-73009456 | None:intergenic | 35.0% |
| AAGAACGCCGAAAAGCTATA+TGG | - | chr5.3:73009837-73009856 | MS.gene47723:intron | 40.0% | |
| AATTCTGCTTATGATCGGTG+TGG | - | chr5.3:73008670-73008689 | MS.gene47723:CDS | 40.0% | |
| ACCAATGTACTCAGAGATGT+TGG | - | chr5.3:73011004-73011023 | MS.gene47723:intron | 40.0% | |
| AGAAACCAACATGATGTTCG+GGG | + | chr5.3:73011330-73011349 | None:intergenic | 40.0% | |
| AGAACCTTCAAGAAGTTCAG+AGG | - | chr5.3:73008525-73008544 | MS.gene47723:CDS | 40.0% | |
| AGAACGCCGAAAAGCTATAT+GGG | - | chr5.3:73009838-73009857 | MS.gene47723:intron | 40.0% | |
| CCATTCAAGGACATGATAGA+AGG | - | chr5.3:73010797-73010816 | MS.gene47723:intron | 40.0% | |
| CCTTCTATCATGTCCTTGAA+TGG | + | chr5.3:73010800-73010819 | None:intergenic | 40.0% | |
| CTAGGATAAGGTTTGGAAGT+GGG | - | chr5.3:73008488-73008507 | MS.gene47723:CDS | 40.0% | |
| TAGGATAAGGTTTGGAAGTG+GGG | - | chr5.3:73008489-73008508 | MS.gene47723:CDS | 40.0% | |
| TAGGCAAGCAATTAAGTGGT+TGG | - | chr5.3:73009681-73009700 | MS.gene47723:CDS | 40.0% | |
| TATAAGACCCTAGTTTCGGT+GGG | + | chr5.3:73011124-73011143 | None:intergenic | 40.0% | |
| TCAGATGAAGACATTATGCG+TGG | - | chr5.3:73011784-73011803 | MS.gene47723:intron | 40.0% | |
| TCCAACATCTCTGAGTACAT+TGG | + | chr5.3:73011008-73011027 | None:intergenic | 40.0% | |
| TGAGAAGCCCTTTAGTTAGA+AGG | + | chr5.3:73011358-73011377 | None:intergenic | 40.0% | |
| TGAGTTGTCCGCATAGATTA+AGG | + | chr5.3:73011159-73011178 | None:intergenic | 40.0% | |
| TTATCACTACCAGCTGCTTA+TGG | - | chr5.3:73012027-73012046 | MS.gene47723:CDS | 40.0% | |
| TTCAAGAAGTTCAGAGGAGA+GGG | - | chr5.3:73008531-73008550 | MS.gene47723:CDS | 40.0% | |
| TTTCTAACCCACCGAAACTA+GGG | - | chr5.3:73011114-73011133 | MS.gene47723:intron | 40.0% | |
| TTTGGTGAGAGAAGATAGGA+GGG | - | chr5.3:73008582-73008601 | MS.gene47723:CDS | 40.0% | |
| ! | AAGGTTTTCATTCTCGCGAT+CGG | - | chr5.3:73011428-73011447 | MS.gene47723:intron | 40.0% |
| ! | GCTTATGGAACTGCACTTTT+AGG | - | chr5.3:73012042-73012061 | MS.gene47723:CDS | 40.0% |
| ! | GGGCAGCATTGTTGTTATAT+AGG | - | chr5.3:73011926-73011945 | MS.gene47723:CDS | 40.0% |
| ! | GTGTGATGTGTGAAGCATTT+GGG | + | chr5.3:73010043-73010062 | None:intergenic | 40.0% |
| ! | TATAATGCTGCATTGGCACT+AGG | - | chr5.3:73010965-73010984 | MS.gene47723:intron | 40.0% |
| ! | TCTAGGATAAGGTTTGGAAG+TGG | - | chr5.3:73008487-73008506 | MS.gene47723:CDS | 40.0% |
| ! | TGAGATTCCGGATTTGAGTT+CGG | - | chr5.3:73010589-73010608 | MS.gene47723:intron | 40.0% |
| !! | ATGGGTTCTAGGATAAGGTT+TGG | - | chr5.3:73008481-73008500 | MS.gene47723:CDS | 40.0% |
| !!! | AGTTTTGAAGCAAGCAGGTT+TGG | - | chr5.3:73008564-73008583 | MS.gene47723:CDS | 40.0% |
| !!! | GAAGTAGTTTTGAAGCAAGC+AGG | - | chr5.3:73008559-73008578 | MS.gene47723:CDS | 40.0% |
| !!! | TTTTAGTTTTTGGTGGTGGC+CGG | + | chr5.3:73010366-73010385 | None:intergenic | 40.0% |
| AATGCTCTCTGTAGAAGCCT+TGG | + | chr5.3:73010945-73010964 | None:intergenic | 45.0% | |
| ACACTAAGACCTCACCATTG+GGG | + | chr5.3:73009317-73009336 | None:intergenic | 45.0% | |
| AGACAATCGTGTAGTCCGTA+AGG | + | chr5.3:73010662-73010681 | None:intergenic | 45.0% | |
| AGACACTAAGACCTCACCAT+TGG | + | chr5.3:73009319-73009338 | None:intergenic | 45.0% | |
| AGCTCAGTTCTGCTAGTAGA+TGG | - | chr5.3:73011896-73011915 | MS.gene47723:CDS | 45.0% | |
| AGGACATGATAGAAGGGATG+AGG | - | chr5.3:73010804-73010823 | MS.gene47723:intron | 45.0% | |
| AGGATAAGGTTTGGAAGTGG+GGG | - | chr5.3:73008490-73008509 | MS.gene47723:CDS | 45.0% | |
| AGTCCTGAAGTTCATCAGAG+AGG | + | chr5.3:73011267-73011286 | None:intergenic | 45.0% | |
| ATCACTTAGACCATCCCCAA+TGG | - | chr5.3:73009300-73009319 | MS.gene47723:intron | 45.0% | |
| CATAGGCGCCTTAATCTATG+CGG | - | chr5.3:73011148-73011167 | MS.gene47723:intron | 45.0% | |
| CATGATAGAAGGGATGAGGA+TGG | - | chr5.3:73010808-73010827 | MS.gene47723:intron | 45.0% | |
| CTACCTCTCTGATGAACTTC+AGG | - | chr5.3:73011261-73011280 | MS.gene47723:intron | 45.0% | |
| CTCTCCTCTGAACTTCTTGA+AGG | + | chr5.3:73008532-73008551 | None:intergenic | 45.0% | |
| CTTCAAGAAGTTCAGAGGAG+AGG | - | chr5.3:73008530-73008549 | MS.gene47723:CDS | 45.0% | |
| CTTGTGCTAGCTCATCTTGA+GGG | + | chr5.3:73011756-73011775 | None:intergenic | 45.0% | |
| CTTTCGTCCGAACTCAAATC+CGG | + | chr5.3:73010599-73010618 | None:intergenic | 45.0% | |
| CTTTCTAACCCACCGAAACT+AGG | - | chr5.3:73011113-73011132 | MS.gene47723:intron | 45.0% | |
| GACACTAAGACCTCACCATT+GGG | + | chr5.3:73009318-73009337 | None:intergenic | 45.0% | |
| GCGGTATAAGACCCTAGTTT+CGG | + | chr5.3:73011128-73011147 | None:intergenic | 45.0% | |
| GTAACACTCTTCCCCAAGAA+AGG | + | chr5.3:73011302-73011321 | None:intergenic | 45.0% | |
| GTATAAGACCCTAGTTTCGG+TGG | + | chr5.3:73011125-73011144 | None:intergenic | 45.0% | |
| GTCTGTTGAGTTAGGCCTTA+CGG | - | chr5.3:73010644-73010663 | MS.gene47723:intron | 45.0% | |
| TACTATGTTGCTGGGACAGT+AGG | - | chr5.3:73010881-73010900 | MS.gene47723:intron | 45.0% | |
| TCTGTAGAAGCCTTGGATTC+AGG | + | chr5.3:73010938-73010957 | None:intergenic | 45.0% | |
| TTGGTGAGAGAAGATAGGAG+GGG | - | chr5.3:73008583-73008602 | MS.gene47723:CDS | 45.0% | |
| ! | ATAGATTAAGGCGCCTATGG+CGG | + | chr5.3:73011147-73011166 | None:intergenic | 45.0% |
| ! | GGTGTGATGTGTGAAGCATT+TGG | + | chr5.3:73010044-73010063 | None:intergenic | 45.0% |
| ! | GTTTGGTGAGAGAAGATAGG+AGG | - | chr5.3:73008581-73008600 | MS.gene47723:CDS | 45.0% |
| ! | TGAGCTTAGCTCAGTTGGTA+AGG | - | chr5.3:73010303-73010322 | MS.gene47723:intron | 45.0% |
| !! | CAGGTTTGGTGAGAGAAGAT+AGG | - | chr5.3:73008578-73008597 | MS.gene47723:CDS | 45.0% |
| !! | GTGGTCTTCTCCTTTTTCGT+GGG | + | chr5.3:73010489-73010508 | None:intergenic | 45.0% |
| !! | TCAGGTGCTATTCCCATTAC+AGG | + | chr5.3:73010920-73010939 | None:intergenic | 45.0% |
| !! | TGTGGTCTTCTCCTTTTTCG+TGG | + | chr5.3:73010490-73010509 | None:intergenic | 45.0% |
| !!! | TTTAGTTTTTGGTGGTGGCC+GGG | + | chr5.3:73010365-73010384 | None:intergenic | 45.0% |
| !! | ATTAAATATATATTAGTAAT+TGG | + | chr5.3:73009554-73009573 | None:intergenic | 5.0% |
| !!! | AAATTTTACTTATTATTTAT+TGG | - | chr5.3:73009205-73009224 | MS.gene47723:intron | 5.0% |
| AACAACAATGCTGCCCACAC+AGG | + | chr5.3:73011922-73011941 | None:intergenic | 50.0% | |
| AGTGCAGTTCCATAAGCAGC+TGG | + | chr5.3:73012039-73012058 | None:intergenic | 50.0% | |
| CAACATGATGTTCGGGGAGT+TGG | + | chr5.3:73011324-73011343 | None:intergenic | 50.0% | |
| CAACTCCCCGAACATCATGT+TGG | - | chr5.3:73011322-73011341 | MS.gene47723:intron | 50.0% | |
| CAAGATGAGCTAGCACAAGC+TGG | - | chr5.3:73011757-73011776 | MS.gene47723:intron | 50.0% | |
| GCTTGTGCTAGCTCATCTTG+AGG | + | chr5.3:73011757-73011776 | None:intergenic | 50.0% | |
| GGGAATAGCACCTGAATCCA+AGG | - | chr5.3:73010925-73010944 | MS.gene47723:intron | 50.0% | |
| TAAGACCTCACCATTGGGGA+TGG | + | chr5.3:73009313-73009332 | None:intergenic | 50.0% | |
| TCTCGTGAGCTTAGCTCAGT+TGG | - | chr5.3:73010298-73010317 | MS.gene47723:intron | 50.0% | |
| TGCTAGTAGATGGCCTGTGT+GGG | - | chr5.3:73011906-73011925 | MS.gene47723:CDS | 50.0% | |
| TTAGACCATCCCCAATGGTG+AGG | - | chr5.3:73009305-73009324 | MS.gene47723:intron | 50.0% | |
| ! | AAGGTCTGAGGTTCAAACCC+CGG | - | chr5.3:73010344-73010363 | MS.gene47723:intron | 50.0% |
| ! | CGCATAGATTAAGGCGCCTA+TGG | + | chr5.3:73011150-73011169 | None:intergenic | 50.0% |
| ! | CTAGGGTCTTATACCGCCAT+AGG | - | chr5.3:73011131-73011150 | MS.gene47723:intron | 50.0% |
| !!! | TTAGTTTTTGGTGGTGGCCG+GGG | + | chr5.3:73010364-73010383 | None:intergenic | 50.0% |
| ACACATCACACCAGCAGCCT+TGG | - | chr5.3:73010052-73010071 | MS.gene47723:intron | 55.0% | |
| ACCAGCAGCCTTGGACAGAT+GGG | - | chr5.3:73010061-73010080 | MS.gene47723:intron | 55.0% | |
| CCTTGGACAGATGGGAGCAA+CGG | - | chr5.3:73010069-73010088 | MS.gene47723:intron | 55.0% | |
| CTGCTAGTAGATGGCCTGTG+TGG | - | chr5.3:73011905-73011924 | MS.gene47723:CDS | 55.0% | |
| CACCAGCAGCCTTGGACAGA+TGG | - | chr5.3:73010060-73010079 | MS.gene47723:intron | 60.0% | |
| CCGTTGCTCCCATCTGTCCA+AGG | + | chr5.3:73010072-73010091 | None:intergenic | 60.0% | |
| TCCCATCTGTCCAAGGCTGC+TGG | + | chr5.3:73010065-73010084 | None:intergenic | 60.0% | |
| ! | GTTTGGAAGTGGGGGTGCAG+TGG | - | chr5.3:73008498-73008517 | MS.gene47723:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 73008481 | 73012098 | 73008481 | ID=MS.gene47723 |
| chr5.3 | mRNA | 73008481 | 73012098 | 73008481 | ID=MS.gene47723.t1;Parent=MS.gene47723 |
| chr5.3 | exon | 73011849 | 73012098 | 73011849 | ID=MS.gene47723.t1.exon1;Parent=MS.gene47723.t1 |
| chr5.3 | CDS | 73011849 | 73012098 | 73011849 | ID=cds.MS.gene47723.t1;Parent=MS.gene47723.t1 |
| chr5.3 | exon | 73010710 | 73010760 | 73010710 | ID=MS.gene47723.t1.exon2;Parent=MS.gene47723.t1 |
| chr5.3 | CDS | 73010710 | 73010760 | 73010710 | ID=cds.MS.gene47723.t1;Parent=MS.gene47723.t1 |
| chr5.3 | exon | 73010401 | 73010573 | 73010401 | ID=MS.gene47723.t1.exon3;Parent=MS.gene47723.t1 |
| chr5.3 | CDS | 73010401 | 73010573 | 73010401 | ID=cds.MS.gene47723.t1;Parent=MS.gene47723.t1 |
| chr5.3 | exon | 73009547 | 73009782 | 73009547 | ID=MS.gene47723.t1.exon4;Parent=MS.gene47723.t1 |
| chr5.3 | CDS | 73009547 | 73009782 | 73009547 | ID=cds.MS.gene47723.t1;Parent=MS.gene47723.t1 |
| chr5.3 | exon | 73008481 | 73008850 | 73008481 | ID=MS.gene47723.t1.exon5;Parent=MS.gene47723.t1 |
| chr5.3 | CDS | 73008481 | 73008850 | 73008481 | ID=cds.MS.gene47723.t1;Parent=MS.gene47723.t1 |
| Gene Sequence |
| Protein sequence |
