Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47963.t1 | XP_013446714.1 | 98 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.00E+00 | 1412.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47963.t1 | Q9SS87 | 40.0 | 720 | 400 | 14 | 1 | 704 | 26 | 729 | 3.6e-150 | 533.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47963.t1 | A0A072TU76 | 98.0 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.0e+00 | 1412.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049418 | MS.gene47963 | 0.812533 | 4.04E-51 | -1.69E-46 |
| MS.gene049698 | MS.gene47963 | 0.846499 | 2.09E-59 | -1.69E-46 |
| MS.gene05017 | MS.gene47963 | 0.826374 | 2.81E-54 | -1.69E-46 |
| MS.gene054118 | MS.gene47963 | 0.837082 | 6.41E-57 | -1.69E-46 |
| MS.gene055371 | MS.gene47963 | 0.839995 | 1.13E-57 | -1.69E-46 |
| MS.gene058351 | MS.gene47963 | 0.813086 | 3.06E-51 | -1.69E-46 |
| MS.gene058823 | MS.gene47963 | 0.8128 | 3.53E-51 | -1.69E-46 |
| MS.gene058909 | MS.gene47963 | 0.989276 | 1.97E-177 | -1.69E-46 |
| MS.gene058912 | MS.gene47963 | 0.986899 | 2.34E-168 | -1.69E-46 |
| MS.gene05894 | MS.gene47963 | 0.821024 | 5.03E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47963.t1 | MTR_8g089660 | 98.011 | 704 | 14 | 0 | 1 | 704 | 1 | 704 | 0.0 | 1444 |
| MS.gene47963.t1 | MTR_3g075450 | 52.991 | 702 | 316 | 8 | 7 | 704 | 15 | 706 | 0.0 | 745 |
| MS.gene47963.t1 | MTR_7g032660 | 43.723 | 693 | 375 | 11 | 20 | 704 | 26 | 711 | 0.0 | 570 |
| MS.gene47963.t1 | MTR_1g074950 | 32.521 | 698 | 402 | 20 | 17 | 703 | 23 | 662 | 1.70e-105 | 336 |
| MS.gene47963.t1 | MTR_1g074990 | 31.746 | 693 | 413 | 23 | 17 | 703 | 22 | 660 | 3.32e-100 | 322 |
| MS.gene47963.t1 | MTR_1g075095 | 31.124 | 694 | 418 | 23 | 17 | 703 | 22 | 662 | 3.14e-96 | 311 |
| MS.gene47963.t1 | MTR_1g075230 | 30.914 | 689 | 419 | 21 | 22 | 704 | 26 | 663 | 8.34e-95 | 308 |
| MS.gene47963.t1 | MTR_1g075030 | 30.836 | 694 | 420 | 23 | 17 | 703 | 22 | 662 | 3.05e-94 | 306 |
| MS.gene47963.t1 | MTR_1g040360 | 29.014 | 710 | 416 | 24 | 20 | 703 | 30 | 677 | 1.06e-77 | 263 |
| MS.gene47963.t1 | MTR_1g075170 | 25.301 | 664 | 369 | 25 | 88 | 704 | 84 | 667 | 3.09e-47 | 178 |
| MS.gene47963.t1 | MTR_1g075180 | 27.202 | 647 | 372 | 24 | 87 | 704 | 60 | 636 | 1.11e-46 | 176 |
| MS.gene47963.t1 | MTR_1g075153 | 25.645 | 620 | 396 | 19 | 101 | 704 | 93 | 663 | 3.26e-44 | 169 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene47963.t1 | AT3G01680 | 39.973 | 728 | 389 | 14 | 1 | 704 | 26 | 729 | 0.0 | 540 |
| MS.gene47963.t1 | AT3G01670 | 37.260 | 730 | 401 | 14 | 5 | 704 | 120 | 822 | 2.49e-156 | 473 |
| MS.gene47963.t1 | AT3G01670 | 37.260 | 730 | 401 | 14 | 5 | 704 | 144 | 846 | 6.50e-156 | 473 |
| MS.gene47963.t1 | AT1G67790 | 27.273 | 704 | 454 | 20 | 13 | 700 | 3 | 664 | 2.79e-74 | 253 |
Find 174 sgRNAs with CRISPR-Local
Find 250 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAACAATAATTTGGTTCTTC+TGG | 0.161982 | 4.1:+11010828 | MS.gene47963:CDS |
| AGCCAATGATGCCGAAAATA+TGG | 0.210391 | 4.1:-11008938 | None:intergenic |
| TCATTATTTCTAGCATTATT+TGG | 0.215889 | 4.1:-11010910 | None:intergenic |
| TGGTTCACAGCTTCGAATTT+AGG | 0.226976 | 4.1:-11008756 | None:intergenic |
| GTGGAAGCAGTCAACGTTTC+AGG | 0.227141 | 4.1:-11008861 | None:intergenic |
| CAGCCAACCTAGGGGAATTC+TGG | 0.232894 | 4.1:+11008637 | MS.gene47963:CDS |
| TTATTCCTAGTGCTGTTTAT+TGG | 0.240892 | 4.1:+11008886 | MS.gene47963:CDS |
| CTAAATCAAGTTGATGATTT+AGG | 0.243441 | 4.1:+11008732 | MS.gene47963:CDS |
| CTTATCCTTTCTCTAGCTTA+AGG | 0.273091 | 4.1:+11010091 | MS.gene47963:CDS |
| AAAGTCAATATGAACTTGTT+TGG | 0.301575 | 4.1:+11009830 | MS.gene47963:CDS |
| TCGCCGACCCAACAATAATT+TGG | 0.306777 | 4.1:+11010819 | MS.gene47963:CDS |
| GCCATCTGTCGTCAACATTT+AGG | 0.310486 | 4.1:+11009169 | MS.gene47963:CDS |
| TTGATCCATTACTCTTTGAT+TGG | 0.312322 | 4.1:+11010169 | MS.gene47963:CDS |
| AACAATAATTTGGTTCTTCT+GGG | 0.327056 | 4.1:+11010829 | MS.gene47963:CDS |
| GTGCTGTTTATTGGACGATT+AGG | 0.341924 | 4.1:+11008895 | MS.gene47963:CDS |
| AGTTTATGACCCTTCACTTC+TGG | 0.343500 | 4.1:+11009936 | MS.gene47963:CDS |
| GGTGCAAATGGGTGTCATTA+AGG | 0.345730 | 4.1:+11008109 | MS.gene47963:CDS |
| CACCAACCGTCTTGCTAAAT+CGG | 0.347696 | 4.1:+11008680 | MS.gene47963:CDS |
| CAACCTCTTGATCAGATATA+TGG | 0.348166 | 4.1:-11009756 | None:intergenic |
| TTCTGGAGCCGGCAAGTATC+AGG | 0.351408 | 4.1:+11009953 | MS.gene47963:CDS |
| CAGTACACATGATGTGGATT+TGG | 0.360665 | 4.1:+11010058 | MS.gene47963:CDS |
| TTATCCTTTCTCTAGCTTAA+GGG | 0.366997 | 4.1:+11010092 | MS.gene47963:CDS |
| TTTCTAACCTTGTTGAATCT+TGG | 0.368924 | 4.1:-11009810 | None:intergenic |
| AGTACACATGATGTGGATTT+GGG | 0.370269 | 4.1:+11010059 | MS.gene47963:CDS |
| TAATTTGGTTCTTCTGGGTT+AGG | 0.371529 | 4.1:+11010834 | MS.gene47963:CDS |
| GATCCGTTGCCATTGTTTGA+TGG | 0.373654 | 4.1:+11009494 | MS.gene47963:CDS |
| GCTTAAGGGAGGAAGCTCTT+TGG | 0.376320 | 4.1:+11010106 | MS.gene47963:CDS |
| GGCAAGTATCAGGTACATTA+AGG | 0.376593 | 4.1:+11009963 | MS.gene47963:CDS |
| TCTCATCCCTGACATCATTC+AGG | 0.378967 | 4.1:+11007985 | MS.gene47963:CDS |
| TGTAACAGGTTAATACTTCC+AGG | 0.385524 | 4.1:+11011127 | MS.gene47963:CDS |
| ACATCAACATGTTCTTCAAT+TGG | 0.386844 | 4.1:-11007914 | None:intergenic |
| GAATGTTATCAAGCTATTCA+TGG | 0.387548 | 4.1:+11008580 | MS.gene47963:CDS |
| TTGATAGCAGTGATCTTGGT+TGG | 0.389293 | 4.1:+11010945 | MS.gene47963:CDS |
| TTGGATTCCAATTGTGGAAA+AGG | 0.390783 | 4.1:+11009849 | MS.gene47963:CDS |
| ATCTCACCAGGATAACATTA+AGG | 0.393914 | 4.1:+11009442 | MS.gene47963:CDS |
| TGATAGCAGTGATCTTGGTT+GGG | 0.396003 | 4.1:+11010946 | MS.gene47963:CDS |
| TTAATACTTCCAGGAGTTGA+TGG | 0.396920 | 4.1:+11011136 | MS.gene47963:CDS |
| AACAACCACATCATTGTAAC+AGG | 0.400553 | 4.1:+11011113 | MS.gene47963:CDS |
| TCAACGTTTCAGGTGCTTCA+TGG | 0.401328 | 4.1:-11008851 | None:intergenic |
| GTCTAGCTTCTGAGTCAAAC+TGG | 0.402501 | 4.1:-11009116 | None:intergenic |
| ACAGGGAAAGCAGGTGCAAA+TGG | 0.405892 | 4.1:+11008097 | MS.gene47963:intron |
| CCTGGTGAGATGTCTCAAAA+AGG | 0.408664 | 4.1:-11009430 | None:intergenic |
| TGATCCATTACTCTTTGATT+GGG | 0.417724 | 4.1:+11010170 | MS.gene47963:CDS |
| AACATGGGGACTTGCACTAT+TGG | 0.418376 | 4.1:+11010137 | MS.gene47963:CDS |
| TTAATGTACCTGATACTTGC+CGG | 0.419081 | 4.1:-11009961 | None:intergenic |
| AGCTTTGATAGCAGTGATCT+TGG | 0.420787 | 4.1:+11010941 | MS.gene47963:CDS |
| ACATCATGTGTACTGCATTC+AGG | 0.422398 | 4.1:-11010050 | None:intergenic |
| GGCAAATACATATGCTTGTA+TGG | 0.423354 | 4.1:+11010632 | MS.gene47963:CDS |
| GGCATCATTGGCTTGGGTCA+AGG | 0.427388 | 4.1:+11008948 | MS.gene47963:CDS |
| CAGAAGAACCAAATTATTGT+TGG | 0.427439 | 4.1:-11010827 | None:intergenic |
| CTTGTATGGAGGGGATGATA+TGG | 0.427516 | 4.1:+11010646 | MS.gene47963:CDS |
| TTAGAACCTTAATGTTATCC+TGG | 0.432692 | 4.1:-11009448 | None:intergenic |
| CTGCCTTCAGGTTAGCATTG+AGG | 0.432974 | 4.1:+11009690 | MS.gene47963:intron |
| CCAACATGGCCTTGAGAAGA+TGG | 0.452960 | 4.1:-11008776 | None:intergenic |
| TTCTATGCTAACCCTTTGCT+TGG | 0.456050 | 4.1:-11009522 | None:intergenic |
| GCCACAGCCATAGGAATACT+TGG | 0.462169 | 4.1:+11008558 | MS.gene47963:CDS |
| TGGATTCCAATTGTGGAAAA+GGG | 0.462360 | 4.1:+11009850 | MS.gene47963:CDS |
| GGAATTGTTCCATCAACTCC+TGG | 0.465713 | 4.1:-11011145 | None:intergenic |
| CAGCATTTGCAGCCAACCTA+GGG | 0.467499 | 4.1:+11008628 | MS.gene47963:CDS |
| GCTTGTGGTGTTGGATCCAC+AGG | 0.469284 | 4.1:+11010014 | MS.gene47963:CDS |
| ACACATACCTGAATGATGTC+AGG | 0.469745 | 4.1:-11007992 | None:intergenic |
| TCATGGTCAATGTACTGATC+AGG | 0.470291 | 4.1:-11008834 | None:intergenic |
| CACTGGAAATGATGTATGTA+GGG | 0.475708 | 4.1:+11010726 | MS.gene47963:CDS |
| AGAAGAACCAAATTATTGTT+GGG | 0.477001 | 4.1:-11010826 | None:intergenic |
| AAGGGTGATGTGAATGATAA+AGG | 0.477561 | 4.1:+11011052 | MS.gene47963:CDS |
| TAACATTCCAAGTATTCCTA+TGG | 0.480889 | 4.1:-11008565 | None:intergenic |
| GATCACTGCTATCAAAGCTT+AGG | 0.481506 | 4.1:-11010937 | None:intergenic |
| TGTTACAATGATGTGGTTGT+TGG | 0.481648 | 4.1:-11011111 | None:intergenic |
| TCAGCACATACAATCTTGTC+TGG | 0.484584 | 4.1:-11011166 | None:intergenic |
| CGATTTAGCAAGACGGTTGG+TGG | 0.490770 | 4.1:-11008679 | None:intergenic |
| GCCAATGATGCCGAAAATAT+GGG | 0.491206 | 4.1:-11008937 | None:intergenic |
| CCACTGGAAATGATGTATGT+AGG | 0.492407 | 4.1:+11010725 | MS.gene47963:CDS |
| TGACCCTTCACTTCTGGAGC+CGG | 0.494397 | 4.1:+11009942 | MS.gene47963:CDS |
| GCATCATTGGCTTGGGTCAA+GGG | 0.496479 | 4.1:+11008949 | MS.gene47963:CDS |
| GCAGCATTTGCAGCCAACCT+AGG | 0.498859 | 4.1:+11008627 | MS.gene47963:CDS |
| ACTTGTTTGGATTCCAATTG+TGG | 0.500335 | 4.1:+11009843 | MS.gene47963:CDS |
| ACCTAAATGTTGACGACAGA+TGG | 0.501887 | 4.1:-11009170 | None:intergenic |
| CACAAGTGCTGCAAAATCAA+TGG | 0.502401 | 4.1:+11010685 | MS.gene47963:CDS |
| CTCTTTGGAAAGATGAAACA+TGG | 0.504100 | 4.1:+11010121 | MS.gene47963:CDS |
| TGTATGTAATCATCCATTGC+AGG | 0.507632 | 4.1:-11011082 | None:intergenic |
| TGATGGTTCTACCAAGCAAA+GGG | 0.508257 | 4.1:+11009511 | MS.gene47963:CDS |
| GGGATGATATGGAATGGATC+AGG | 0.513866 | 4.1:+11010657 | MS.gene47963:CDS |
| AAAGCCTATGCTTGTGGTGT+TGG | 0.519130 | 4.1:+11010005 | MS.gene47963:CDS |
| AATGTTATCAAGCTATTCAT+GGG | 0.520097 | 4.1:+11008581 | MS.gene47963:CDS |
| AAAAGCTTTGATTCGCTGCA+AGG | 0.522723 | 4.1:+11009469 | MS.gene47963:CDS |
| CAGAAGCTAGACAGCATGAA+TGG | 0.523616 | 4.1:+11009127 | MS.gene47963:CDS |
| CTAACCCAATCAAAGAGTAA+TGG | 0.523816 | 4.1:-11010174 | None:intergenic |
| GATATCTTGCAAGTGTATGA+TGG | 0.525160 | 4.1:+11008518 | MS.gene47963:intron |
| CTTGCAAGTGTATGATGGGT+GGG | 0.527555 | 4.1:+11008523 | MS.gene47963:CDS |
| CAGGGAAAGCAGGTGCAAAT+GGG | 0.534533 | 4.1:+11008098 | MS.gene47963:intron |
| TGTGGCGCATAGCTCTAGAT+TGG | 0.538177 | 4.1:-11007835 | None:intergenic |
| TCCACTCATCCAACTCATCA+AGG | 0.539782 | 4.1:-11011030 | None:intergenic |
| GATGCTCATGCCACAGCCAT+AGG | 0.540232 | 4.1:+11008549 | MS.gene47963:CDS |
| GGTGTTGGATCCACAGGGGA+AGG | 0.541944 | 4.1:+11010020 | MS.gene47963:CDS |
| CAACACAAAGCCTATGCTTG+TGG | 0.543460 | 4.1:+11009999 | MS.gene47963:CDS |
| TTCTTCAATTGGAGCATGAG+TGG | 0.548840 | 4.1:-11007903 | None:intergenic |
| GTCAAATAAGTCAGACTCGT+TGG | 0.549098 | 4.1:-11008138 | None:intergenic |
| AAGCCAGAATTCCCCTAGGT+TGG | 0.550403 | 4.1:-11008640 | None:intergenic |
| TCCTCCCTTAAGCTAGAGAA+AGG | 0.552077 | 4.1:-11010096 | None:intergenic |
| CCATCTTCTCAAGGCCATGT+TGG | 0.553276 | 4.1:+11008776 | MS.gene47963:CDS |
| CCACCATATATCTGATCAAG+AGG | 0.555144 | 4.1:+11009753 | MS.gene47963:CDS |
| AGGTTAGCATTGAGGTGTTG+AGG | 0.556064 | 4.1:+11009698 | MS.gene47963:intron |
| AATACATATGCTTGTATGGA+GGG | 0.557127 | 4.1:+11010636 | MS.gene47963:CDS |
| TGCTGAGTGTGGCCAGCCAA+TGG | 0.557768 | 4.1:+11011183 | MS.gene47963:CDS |
| TCCAAGTATTCCTATGGCTG+TGG | 0.558646 | 4.1:-11008559 | None:intergenic |
| TGATGAGTTGGATGAGTGGA+AGG | 0.558717 | 4.1:+11011033 | MS.gene47963:CDS |
| ATGGAGGGGATGATATGGAA+TGG | 0.560454 | 4.1:+11010651 | MS.gene47963:CDS |
| GAACCAAATTATTGTTGGGT+CGG | 0.565403 | 4.1:-11010822 | None:intergenic |
| TTTAAAGTGCCTTGATGAGT+TGG | 0.567126 | 4.1:+11011021 | MS.gene47963:CDS |
| TCATTGTTTCAGGTAACGGC+AGG | 0.571139 | 4.1:+11010611 | MS.gene47963:intron |
| CCTACATACATCATTTCCAG+TGG | 0.574920 | 4.1:-11010725 | None:intergenic |
| GACTGCAATCAATGATGCCA+TGG | 0.581079 | 4.1:+11009908 | MS.gene47963:CDS |
| GATGTGGATTTGGGGAAGCA+TGG | 0.581300 | 4.1:+11010068 | MS.gene47963:CDS |
| GGATCCAACACCACAAGCAT+AGG | 0.581914 | 4.1:-11010009 | None:intergenic |
| TTGCAAGTGTATGATGGGTG+GGG | 0.583049 | 4.1:+11008524 | MS.gene47963:CDS |
| TTGGACGATTAGGAGTATTG+TGG | 0.585521 | 4.1:+11008905 | MS.gene47963:CDS |
| AGCTGTGAACCATCTTCTCA+AGG | 0.587074 | 4.1:+11008767 | MS.gene47963:CDS |
| GCAATGGATGATTACATACA+AGG | 0.587303 | 4.1:+11011085 | MS.gene47963:CDS |
| TTGATGGTTCTACCAAGCAA+AGG | 0.587353 | 4.1:+11009510 | MS.gene47963:CDS |
| CTTGCCGGCTCCAGAAGTGA+AGG | 0.593649 | 4.1:-11009946 | None:intergenic |
| TCTTGCAAGTGTATGATGGG+TGG | 0.595387 | 4.1:+11008522 | MS.gene47963:CDS |
| TGCAAGTGTATGATGGGTGG+GGG | 0.599102 | 4.1:+11008525 | MS.gene47963:CDS |
| AAGCTATTCATGGGATGCCA+AGG | 0.599229 | 4.1:+11008590 | MS.gene47963:CDS |
| AACCGATTTAGCAAGACGGT+TGG | 0.600581 | 4.1:-11008682 | None:intergenic |
| CACATACCTGAATGATGTCA+GGG | 0.601333 | 4.1:-11007991 | None:intergenic |
| GGGTTAGGCTTGAAAGCATG+TGG | 0.601692 | 4.1:+11010849 | MS.gene47963:CDS |
| TCCTTTCTCTAGCTTAAGGG+AGG | 0.602422 | 4.1:+11010095 | MS.gene47963:CDS |
| CTTGATCAGATATATGGTGG+AGG | 0.605091 | 4.1:-11009750 | None:intergenic |
| TGCTAATGCTATCACCACCT+TGG | 0.608163 | 4.1:-11008607 | None:intergenic |
| GACATCAACAACAGAGACAT+GGG | 0.608488 | 4.1:+11009087 | MS.gene47963:CDS |
| AATTAACAAAATTTCATGCG+AGG | 0.609758 | 4.1:+11008184 | MS.gene47963:CDS |
| CCTCTTGATCAGATATATGG+TGG | 0.610021 | 4.1:-11009753 | None:intergenic |
| GCCTTGATGAGTTGGATGAG+TGG | 0.611429 | 4.1:+11011029 | MS.gene47963:CDS |
| ATACATATGCTTGTATGGAG+GGG | 0.612025 | 4.1:+11010637 | MS.gene47963:CDS |
| AACAGCACTAGGAATAAGAG+TGG | 0.612767 | 4.1:-11008880 | None:intergenic |
| ATCGTCCAATAAACAGCACT+AGG | 0.613869 | 4.1:-11008891 | None:intergenic |
| TGACATCAACAACAGAGACA+TGG | 0.615029 | 4.1:+11009086 | MS.gene47963:CDS |
| GCTCTAGATTGGTTCTTCCG+TGG | 0.618668 | 4.1:-11007824 | None:intergenic |
| ATATCTTGCAAGTGTATGAT+GGG | 0.620245 | 4.1:+11008519 | MS.gene47963:CDS |
| TCTTTGGAAAGATGAAACAT+GGG | 0.627324 | 4.1:+11010122 | MS.gene47963:CDS |
| AAGAACTCTACAAATTCCAC+TGG | 0.628463 | 4.1:+11010709 | MS.gene47963:CDS |
| AGGCACAGTAAGAATGACAC+AGG | 0.628719 | 4.1:+11010982 | MS.gene47963:CDS |
| CAGGGATGAGAGAAGCTGCA+TGG | 0.630283 | 4.1:-11007973 | None:intergenic |
| GAACCATCAAACAATGGCAA+CGG | 0.633219 | 4.1:-11009497 | None:intergenic |
| TCAGGTACATTAAGGAGGTG+TGG | 0.633877 | 4.1:+11009971 | MS.gene47963:CDS |
| CTACAAGCCAGAATTCCCCT+AGG | 0.640741 | 4.1:-11008644 | None:intergenic |
| ATTAACCTGTTACAATGATG+TGG | 0.642311 | 4.1:-11011118 | None:intergenic |
| CATCTGATGCCGAAAACATG+TGG | 0.643576 | 4.1:-11007853 | None:intergenic |
| GGTTGGGCTATAATAAGTCA+AGG | 0.646453 | 4.1:+11010962 | MS.gene47963:CDS |
| TGAATGCAGTACACATGATG+TGG | 0.648791 | 4.1:+11010052 | MS.gene47963:CDS |
| AGGTTCACAACCTTCCCCTG+TGG | 0.653743 | 4.1:-11010030 | None:intergenic |
| CAATTGGAGCATGAGTGGCG+CGG | 0.654595 | 4.1:-11007898 | None:intergenic |
| GTAAGAATGACACAGGGCAA+AGG | 0.655395 | 4.1:+11010989 | MS.gene47963:CDS |
| CTTGTGGTGTTGGATCCACA+GGG | 0.655675 | 4.1:+11010015 | MS.gene47963:CDS |
| ATTACAACAAAGCAAAACAG+TGG | 0.655934 | 4.1:+11010880 | MS.gene47963:CDS |
| TTGCCGGCTCCAGAAGTGAA+GGG | 0.656832 | 4.1:-11009945 | None:intergenic |
| AAATACATATGCTTGTATGG+AGG | 0.657822 | 4.1:+11010635 | MS.gene47963:CDS |
| CTATTCATGGGATGCCAAGG+TGG | 0.659627 | 4.1:+11008593 | MS.gene47963:CDS |
| TCTTGAACAACATTAAGTAG+AGG | 0.666397 | 4.1:-11007941 | None:intergenic |
| TATGTAGGGAAAAGCAACCC+AGG | 0.668054 | 4.1:+11010740 | MS.gene47963:CDS |
| AAGTATCAGGTACATTAAGG+AGG | 0.672143 | 4.1:+11009966 | MS.gene47963:CDS |
| GCAATCAGTAACATCCAACA+TGG | 0.677386 | 4.1:-11008790 | None:intergenic |
| TTGGTAGAACCATCAAACAA+TGG | 0.687980 | 4.1:-11009503 | None:intergenic |
| CTTTGGAAAGATGAAACATG+GGG | 0.692368 | 4.1:+11010123 | MS.gene47963:CDS |
| GGGTCATAAACTGAGTACCA+TGG | 0.693180 | 4.1:-11009925 | None:intergenic |
| ATGCAACCGATTTAGCAAGA+CGG | 0.703963 | 4.1:-11008686 | None:intergenic |
| TTGTGGAAAAGGGAGCCTTG+TGG | 0.709783 | 4.1:+11009860 | MS.gene47963:CDS |
| AAGATTGTATGTGCTGAGTG+TGG | 0.709803 | 4.1:+11011172 | MS.gene47963:CDS |
| AATCGCGCCAAGATTCAACA+AGG | 0.710479 | 4.1:+11009803 | MS.gene47963:CDS |
| AGCATTTGCAGCCAACCTAG+GGG | 0.713294 | 4.1:+11008629 | MS.gene47963:CDS |
| GATGAGTTGGATGAGTGGAA+GGG | 0.734062 | 4.1:+11011034 | MS.gene47963:CDS |
| GGCACAGTAAGAATGACACA+GGG | 0.746683 | 4.1:+11010983 | MS.gene47963:CDS |
| GTACACATGATGTGGATTTG+GGG | 0.748134 | 4.1:+11010060 | MS.gene47963:CDS |
| TTGTGGTGTTGGATCCACAG+GGG | 0.840678 | 4.1:+11010016 | MS.gene47963:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAAGATCAAAAGTTAAA+TGG | - | chr4.1:11010366-11010385 | None:intergenic | 15.0% |
| !!! | AGTATAATAATTGTTCTTTT+GGG | + | chr4.1:11010385-11010404 | MS.gene47963:intron | 15.0% |
| !!! | TAGTATAATAATTGTTCTTT+TGG | + | chr4.1:11010384-11010403 | MS.gene47963:intron | 15.0% |
| !! | ATATAGAGAATGAAAAACAT+AGG | - | chr4.1:11010201-11010220 | None:intergenic | 20.0% |
| !! | ATCTTATTATTCATTGTTTC+AGG | + | chr4.1:11010601-11010620 | MS.gene47963:intron | 20.0% |
| !! | GAATAATAAGATCAAAAGAA+CGG | - | chr4.1:11010593-11010612 | None:intergenic | 20.0% |
| !! | TTATAACAGACTTTATGAAT+CGG | - | chr4.1:11010490-11010509 | None:intergenic | 20.0% |
| !!! | AACATTAAGATATTTGTTGT+TGG | - | chr4.1:11009013-11009032 | None:intergenic | 20.0% |
| !!! | ATCTAGTTCTAGAAAATATT+CGG | - | chr4.1:11008454-11008473 | None:intergenic | 20.0% |
| !!! | TCATTATTTCTAGCATTATT+TGG | - | chr4.1:11010913-11010932 | None:intergenic | 20.0% |
| !!! | TTGTTTTGAAATTTTACACA+GGG | + | chr4.1:11008080-11008099 | MS.gene47963:intron | 20.0% |
| ! | AATGTTATCAAGCTATTCAT+GGG | + | chr4.1:11008581-11008600 | MS.gene47963:CDS | 25.0% |
| ! | AATTAACAAAATTTCATGCG+AGG | + | chr4.1:11008184-11008203 | MS.gene47963:CDS | 25.0% |
| ! | AGAAGAACCAAATTATTGTT+GGG | - | chr4.1:11010829-11010848 | None:intergenic | 25.0% |
| ! | ATTTAAACATGTAATTCCCA+TGG | - | chr4.1:11010420-11010439 | None:intergenic | 25.0% |
| ! | CAATATTGTCACTCATATTT+GGG | - | chr4.1:11008392-11008411 | None:intergenic | 25.0% |
| ! | CTTTGATTGCTAAAATATAG+CGG | + | chr4.1:11009201-11009220 | MS.gene47963:intron | 25.0% |
| ! | GTTAATTAACTATGTGTTTG+TGG | + | chr4.1:11008057-11008076 | MS.gene47963:intron | 25.0% |
| ! | TCAATATTGTCACTCATATT+TGG | - | chr4.1:11008393-11008412 | None:intergenic | 25.0% |
| ! | TCTGTTATAAACAATCTTCT+TGG | + | chr4.1:11010500-11010519 | MS.gene47963:intron | 25.0% |
| !! | AAAGTCAATATGAACTTGTT+TGG | + | chr4.1:11009830-11009849 | MS.gene47963:CDS | 25.0% |
| !! | TTATTCATTGTTTCAGGTAA+CGG | + | chr4.1:11010607-11010626 | MS.gene47963:intron | 25.0% |
| !!! | AACAATAATTTGGTTCTTCT+GGG | + | chr4.1:11010829-11010848 | MS.gene47963:CDS | 25.0% |
| !!! | CTAAATCAAGTTGATGATTT+AGG | + | chr4.1:11008732-11008751 | MS.gene47963:CDS | 25.0% |
| !!! | GTTGTTTTGAAATTTTACAC+AGG | + | chr4.1:11008079-11008098 | MS.gene47963:intron | 25.0% |
| !!! | TGTTTTGCTTTGTTGTAATT+TGG | - | chr4.1:11010879-11010898 | None:intergenic | 25.0% |
| AAATACATATGCTTGTATGG+AGG | + | chr4.1:11010635-11010654 | MS.gene47963:CDS | 30.0% | |
| AATACATATGCTTGTATGGA+GGG | + | chr4.1:11010636-11010655 | MS.gene47963:CDS | 30.0% | |
| ACATCAACATGTTCTTCAAT+TGG | - | chr4.1:11007917-11007936 | None:intergenic | 30.0% | |
| ATATCTTGCAAGTGTATGAT+GGG | + | chr4.1:11008519-11008538 | MS.gene47963:CDS | 30.0% | |
| ATTAACCTGTTACAATGATG+TGG | - | chr4.1:11011121-11011140 | None:intergenic | 30.0% | |
| ATTACAACAAAGCAAAACAG+TGG | + | chr4.1:11010880-11010899 | MS.gene47963:CDS | 30.0% | |
| CAGAAGAACCAAATTATTGT+TGG | - | chr4.1:11010830-11010849 | None:intergenic | 30.0% | |
| CGTCAACATTTAGGTAATTA+AGG | + | chr4.1:11009178-11009197 | MS.gene47963:intron | 30.0% | |
| GAATGTTATCAAGCTATTCA+TGG | + | chr4.1:11008580-11008599 | MS.gene47963:CDS | 30.0% | |
| GAGCTTGTAGAAACAATTTA+CGG | - | chr4.1:11008368-11008387 | None:intergenic | 30.0% | |
| GCATAACCAAACTAATAAAG+TGG | + | chr4.1:11010236-11010255 | MS.gene47963:intron | 30.0% | |
| TAAATATGCATGCTAATGCA+TGG | - | chr4.1:11008224-11008243 | None:intergenic | 30.0% | |
| TAACATTCCAAGTATTCCTA+TGG | - | chr4.1:11008568-11008587 | None:intergenic | 30.0% | |
| TCTTGAACAACATTAAGTAG+AGG | - | chr4.1:11007944-11007963 | None:intergenic | 30.0% | |
| TGATCCATTACTCTTTGATT+GGG | + | chr4.1:11010170-11010189 | MS.gene47963:CDS | 30.0% | |
| TGTTACAAAAAATGCATTGC+CGG | + | chr4.1:11008419-11008438 | MS.gene47963:intron | 30.0% | |
| TTAGAACCTTAATGTTATCC+TGG | - | chr4.1:11009451-11009470 | None:intergenic | 30.0% | |
| TTGATCCATTACTCTTTGAT+TGG | + | chr4.1:11010169-11010188 | MS.gene47963:CDS | 30.0% | |
| TTTCTAACCTTGTTGAATCT+TGG | - | chr4.1:11009813-11009832 | None:intergenic | 30.0% | |
| ! | ACACTGTATGGTTTTTCTTT+AGG | + | chr4.1:11009322-11009341 | MS.gene47963:intron | 30.0% |
| ! | AGTTAGCCACTTTATTAGTT+TGG | - | chr4.1:11010245-11010264 | None:intergenic | 30.0% |
| ! | CGTAGTATCATTATGCTTTT+TGG | + | chr4.1:11008032-11008051 | MS.gene47963:intron | 30.0% |
| ! | TACATGTAGAACTTTTCCAT+TGG | - | chr4.1:11011202-11011221 | None:intergenic | 30.0% |
| ! | TCCAGTAACTAAATTGACTT+AGG | - | chr4.1:11009258-11009277 | None:intergenic | 30.0% |
| ! | TCTTTGGAAAGATGAAACAT+GGG | + | chr4.1:11010122-11010141 | MS.gene47963:CDS | 30.0% |
| ! | TTATCCTTTCTCTAGCTTAA+GGG | + | chr4.1:11010092-11010111 | MS.gene47963:CDS | 30.0% |
| !! | ATAATCATTTTTCTGCCTTC+AGG | + | chr4.1:11009678-11009697 | MS.gene47963:intron | 30.0% |
| !! | CAACAATAATTTGGTTCTTC+TGG | + | chr4.1:11010828-11010847 | MS.gene47963:CDS | 30.0% |
| !! | TTATTCCTAGTGCTGTTTAT+TGG | + | chr4.1:11008886-11008905 | MS.gene47963:CDS | 30.0% |
| !!! | AAATATTCGGTTTTTAGTGC+CGG | - | chr4.1:11008441-11008460 | None:intergenic | 30.0% |
| !!! | AGTTGCTAATTTTGATTGTC+CGG | - | chr4.1:11010539-11010558 | None:intergenic | 30.0% |
| !!! | ATTCTTTTAACTTTCTGTCC+TGG | - | chr4.1:11010761-11010780 | None:intergenic | 30.0% |
| !!! | CTCAAACTTCTGTTTTGTTT+CGG | - | chr4.1:11009887-11009906 | None:intergenic | 30.0% |
| !!! | TTCTTTTAACTTTCTGTCCT+GGG | - | chr4.1:11010760-11010779 | None:intergenic | 30.0% |
| AACAACCACATCATTGTAAC+AGG | + | chr4.1:11011113-11011132 | MS.gene47963:CDS | 35.0% | |
| AACTGTCGTGTATTTGATGA+AGG | - | chr4.1:11010300-11010319 | None:intergenic | 35.0% | |
| AAGAACTCTACAAATTCCAC+TGG | + | chr4.1:11010709-11010728 | MS.gene47963:CDS | 35.0% | |
| AAGGGTGATGTGAATGATAA+AGG | + | chr4.1:11011052-11011071 | MS.gene47963:CDS | 35.0% | |
| AAGTATCAGGTACATTAAGG+AGG | + | chr4.1:11009966-11009985 | MS.gene47963:CDS | 35.0% | |
| ACTTGTTTGGATTCCAATTG+TGG | + | chr4.1:11009843-11009862 | MS.gene47963:CDS | 35.0% | |
| AGTACACATGATGTGGATTT+GGG | + | chr4.1:11010059-11010078 | MS.gene47963:CDS | 35.0% | |
| ATACATATGCTTGTATGGAG+GGG | + | chr4.1:11010637-11010656 | MS.gene47963:CDS | 35.0% | |
| ATCTCACCAGGATAACATTA+AGG | + | chr4.1:11009442-11009461 | MS.gene47963:CDS | 35.0% | |
| CAACCTCTTGATCAGATATA+TGG | - | chr4.1:11009759-11009778 | None:intergenic | 35.0% | |
| CACTGGAAATGATGTATGTA+GGG | + | chr4.1:11010726-11010745 | MS.gene47963:CDS | 35.0% | |
| CATCTGCATCGTAACATATT+TGG | - | chr4.1:11009373-11009392 | None:intergenic | 35.0% | |
| CTAACCCAATCAAAGAGTAA+TGG | - | chr4.1:11010177-11010196 | None:intergenic | 35.0% | |
| GAACCAAATTATTGTTGGGT+CGG | - | chr4.1:11010825-11010844 | None:intergenic | 35.0% | |
| GATATCTTGCAAGTGTATGA+TGG | + | chr4.1:11008518-11008537 | MS.gene47963:intron | 35.0% | |
| GCAATGGATGATTACATACA+AGG | + | chr4.1:11011085-11011104 | MS.gene47963:CDS | 35.0% | |
| GCCTAAGTCAATTTAGTTAC+TGG | + | chr4.1:11009254-11009273 | MS.gene47963:intron | 35.0% | |
| GCTATTGTCATAAGCTATCT+TGG | + | chr4.1:11008302-11008321 | MS.gene47963:intron | 35.0% | |
| GGCAAATACATATGCTTGTA+TGG | + | chr4.1:11010632-11010651 | MS.gene47963:CDS | 35.0% | |
| GTCCTAAAGATAGACTGATA+GGG | + | chr4.1:11010337-11010356 | MS.gene47963:intron | 35.0% | |
| GTGTATTTGATGAAGGAGAA+AGG | - | chr4.1:11010293-11010312 | None:intergenic | 35.0% | |
| GTGTGTTAATCATGAAGATG+AGG | + | chr4.1:11009294-11009313 | MS.gene47963:intron | 35.0% | |
| TCCTAAAGATAGACTGATAG+GGG | + | chr4.1:11010338-11010357 | MS.gene47963:intron | 35.0% | |
| TGGATTCCAATTGTGGAAAA+GGG | + | chr4.1:11009850-11009869 | MS.gene47963:CDS | 35.0% | |
| TGTAACAGGTTAATACTTCC+AGG | + | chr4.1:11011127-11011146 | MS.gene47963:CDS | 35.0% | |
| TGTATGTAATCATCCATTGC+AGG | - | chr4.1:11011085-11011104 | None:intergenic | 35.0% | |
| TGTTACAATGATGTGGTTGT+TGG | - | chr4.1:11011114-11011133 | None:intergenic | 35.0% | |
| TTAATACTTCCAGGAGTTGA+TGG | + | chr4.1:11011136-11011155 | MS.gene47963:CDS | 35.0% | |
| TTAATGTACCTGATACTTGC+CGG | - | chr4.1:11009964-11009983 | None:intergenic | 35.0% | |
| TTGGATTCCAATTGTGGAAA+AGG | + | chr4.1:11009849-11009868 | MS.gene47963:CDS | 35.0% | |
| TTGGTAGAACCATCAAACAA+TGG | - | chr4.1:11009506-11009525 | None:intergenic | 35.0% | |
| TTTGATTGTCCGGTCTAAAT+CGG | - | chr4.1:11010529-11010548 | None:intergenic | 35.0% | |
| ! | AAATTTTACACAGGGAAAGC+AGG | + | chr4.1:11008088-11008107 | MS.gene47963:intron | 35.0% |
| ! | CTATCAGTCTATCTTTAGGA+CGG | - | chr4.1:11010338-11010357 | None:intergenic | 35.0% |
| ! | CTCTTTGGAAAGATGAAACA+TGG | + | chr4.1:11010121-11010140 | MS.gene47963:CDS | 35.0% |
| ! | CTTATCCTTTCTCTAGCTTA+AGG | + | chr4.1:11010091-11010110 | MS.gene47963:CDS | 35.0% |
| ! | CTTTGGAAAGATGAAACATG+GGG | + | chr4.1:11010123-11010142 | MS.gene47963:CDS | 35.0% |
| ! | GCTCAGATTTTCGTCATATA+TGG | - | chr4.1:11010792-11010811 | None:intergenic | 35.0% |
| ! | TTTAAAGTGCCTTGATGAGT+TGG | + | chr4.1:11011021-11011040 | MS.gene47963:CDS | 35.0% |
| !! | AAGATATTTGTTGTTGGTGC+AGG | - | chr4.1:11009007-11009026 | None:intergenic | 35.0% |
| !! | TAATTTGGTTCTTCTGGGTT+AGG | + | chr4.1:11010834-11010853 | MS.gene47963:CDS | 35.0% |
| !! | TGCTAAAATATAGCGGATAG+CGG | + | chr4.1:11009208-11009227 | MS.gene47963:intron | 35.0% |
| AACAGCACTAGGAATAAGAG+TGG | - | chr4.1:11008883-11008902 | None:intergenic | 40.0% | |
| AAGATTGTATGTGCTGAGTG+TGG | + | chr4.1:11011172-11011191 | MS.gene47963:CDS | 40.0% | |
| ACACATACCTGAATGATGTC+AGG | - | chr4.1:11007995-11008014 | None:intergenic | 40.0% | |
| ACATCATGTGTACTGCATTC+AGG | - | chr4.1:11010053-11010072 | None:intergenic | 40.0% | |
| ACCTAAATGTTGACGACAGA+TGG | - | chr4.1:11009173-11009192 | None:intergenic | 40.0% | |
| AGCCAATGATGCCGAAAATA+TGG | - | chr4.1:11008941-11008960 | None:intergenic | 40.0% | |
| AGTTTATGACCCTTCACTTC+TGG | + | chr4.1:11009936-11009955 | MS.gene47963:CDS | 40.0% | |
| ATCGTCCAATAAACAGCACT+AGG | - | chr4.1:11008894-11008913 | None:intergenic | 40.0% | |
| CACATACCTGAATGATGTCA+GGG | - | chr4.1:11007994-11008013 | None:intergenic | 40.0% | |
| CAGTACACATGATGTGGATT+TGG | + | chr4.1:11010058-11010077 | MS.gene47963:CDS | 40.0% | |
| CATGTAATTCCCATGGAATC+TGG | - | chr4.1:11010413-11010432 | None:intergenic | 40.0% | |
| CCACCATATATCTGATCAAG+AGG | + | chr4.1:11009753-11009772 | MS.gene47963:CDS | 40.0% | |
| CCACTGGAAATGATGTATGT+AGG | + | chr4.1:11010725-11010744 | MS.gene47963:CDS | 40.0% | |
| CCTACATACATCATTTCCAG+TGG | - | chr4.1:11010728-11010747 | None:intergenic | 40.0% | |
| CCTCTTGATCAGATATATGG+TGG | - | chr4.1:11009756-11009775 | None:intergenic | 40.0% | |
| CGTCCTAAAGATAGACTGAT+AGG | + | chr4.1:11010336-11010355 | MS.gene47963:intron | 40.0% | |
| CTTGATCAGATATATGGTGG+AGG | - | chr4.1:11009753-11009772 | None:intergenic | 40.0% | |
| GAACCATCAAACAATGGCAA+CGG | - | chr4.1:11009500-11009519 | None:intergenic | 40.0% | |
| GACATCAACAACAGAGACAT+GGG | + | chr4.1:11009087-11009106 | MS.gene47963:CDS | 40.0% | |
| GATCACTGCTATCAAAGCTT+AGG | - | chr4.1:11010940-11010959 | None:intergenic | 40.0% | |
| GATGAGGAAGAAACACTGTA+TGG | + | chr4.1:11009310-11009329 | MS.gene47963:intron | 40.0% | |
| GCAATCAGTAACATCCAACA+TGG | - | chr4.1:11008793-11008812 | None:intergenic | 40.0% | |
| GCCAATGATGCCGAAAATAT+GGG | - | chr4.1:11008940-11008959 | None:intergenic | 40.0% | |
| GGCAAGTATCAGGTACATTA+AGG | + | chr4.1:11009963-11009982 | MS.gene47963:CDS | 40.0% | |
| GGTTGGGCTATAATAAGTCA+AGG | + | chr4.1:11010962-11010981 | MS.gene47963:CDS | 40.0% | |
| GTACACATGATGTGGATTTG+GGG | + | chr4.1:11010060-11010079 | MS.gene47963:CDS | 40.0% | |
| GTCAAATAAGTCAGACTCGT+TGG | - | chr4.1:11008141-11008160 | None:intergenic | 40.0% | |
| TCAGCACATACAATCTTGTC+TGG | - | chr4.1:11011169-11011188 | None:intergenic | 40.0% | |
| TCCCCTATCAGTCTATCTTT+AGG | - | chr4.1:11010342-11010361 | None:intergenic | 40.0% | |
| TGAATGCAGTACACATGATG+TGG | + | chr4.1:11010052-11010071 | MS.gene47963:CDS | 40.0% | |
| TGACATCAACAACAGAGACA+TGG | + | chr4.1:11009086-11009105 | MS.gene47963:CDS | 40.0% | |
| TGATAGCAGTGATCTTGGTT+GGG | + | chr4.1:11010946-11010965 | MS.gene47963:CDS | 40.0% | |
| TGGTTCACAGCTTCGAATTT+AGG | - | chr4.1:11008759-11008778 | None:intergenic | 40.0% | |
| TTCTATGCTAACCCTTTGCT+TGG | - | chr4.1:11009525-11009544 | None:intergenic | 40.0% | |
| TTCTTCAATTGGAGCATGAG+TGG | - | chr4.1:11007906-11007925 | None:intergenic | 40.0% | |
| ! | AAAAGCTTTGATTCGCTGCA+AGG | + | chr4.1:11009469-11009488 | MS.gene47963:CDS | 40.0% |
| ! | AGCTTTGATAGCAGTGATCT+TGG | + | chr4.1:11010941-11010960 | MS.gene47963:CDS | 40.0% |
| ! | ATGCAACCGATTTAGCAAGA+CGG | - | chr4.1:11008689-11008708 | None:intergenic | 40.0% |
| ! | CACAAGTGCTGCAAAATCAA+TGG | + | chr4.1:11010685-11010704 | MS.gene47963:CDS | 40.0% |
| ! | GCATGTGCATCCCATATTTT+CGG | + | chr4.1:11008927-11008946 | MS.gene47963:CDS | 40.0% |
| ! | GTTTTCGGCATCAGATGATA+CGG | + | chr4.1:11007859-11007878 | MS.gene47963:CDS | 40.0% |
| ! | TAAAGGAGTTTTGCCTGCAA+TGG | + | chr4.1:11011069-11011088 | MS.gene47963:CDS | 40.0% |
| ! | TCATGGTCAATGTACTGATC+AGG | - | chr4.1:11008837-11008856 | None:intergenic | 40.0% |
| ! | TCCCATATTTTCGGCATCAT+TGG | + | chr4.1:11008936-11008955 | MS.gene47963:CDS | 40.0% |
| ! | TGATGGTTCTACCAAGCAAA+GGG | + | chr4.1:11009511-11009530 | MS.gene47963:CDS | 40.0% |
| ! | TGTAGAACTTTTCCATTGGC+TGG | - | chr4.1:11011198-11011217 | None:intergenic | 40.0% |
| ! | TTGATAGCAGTGATCTTGGT+TGG | + | chr4.1:11010945-11010964 | MS.gene47963:CDS | 40.0% |
| ! | TTGATGGTTCTACCAAGCAA+AGG | + | chr4.1:11009510-11009529 | MS.gene47963:CDS | 40.0% |
| !! | GTGCTGTTTATTGGACGATT+AGG | + | chr4.1:11008895-11008914 | MS.gene47963:CDS | 40.0% |
| !! | TATTTTCGGCATCATTGGCT+TGG | + | chr4.1:11008941-11008960 | MS.gene47963:CDS | 40.0% |
| !! | TTGGACGATTAGGAGTATTG+TGG | + | chr4.1:11008905-11008924 | MS.gene47963:CDS | 40.0% |
| !!! | ATTTTCGGCATCATTGGCTT+GGG | + | chr4.1:11008942-11008961 | MS.gene47963:CDS | 40.0% |
| !!! | TTTTGGGATCCAGATTCCAT+GGG | + | chr4.1:11010401-11010420 | MS.gene47963:intron | 40.0% |
| AAAGCCTATGCTTGTGGTGT+TGG | + | chr4.1:11010005-11010024 | MS.gene47963:CDS | 45.0% | |
| AACATGGGGACTTGCACTAT+TGG | + | chr4.1:11010137-11010156 | MS.gene47963:CDS | 45.0% | |
| AAGCTATTCATGGGATGCCA+AGG | + | chr4.1:11008590-11008609 | MS.gene47963:CDS | 45.0% | |
| AATCGCGCCAAGATTCAACA+AGG | + | chr4.1:11009803-11009822 | MS.gene47963:CDS | 45.0% | |
| ACACCTCAATGCTAACCTGA+AGG | - | chr4.1:11009696-11009715 | None:intergenic | 45.0% | |
| AGCTGTGAACCATCTTCTCA+AGG | + | chr4.1:11008767-11008786 | MS.gene47963:CDS | 45.0% | |
| AGGCACAGTAAGAATGACAC+AGG | + | chr4.1:11010982-11011001 | MS.gene47963:CDS | 45.0% | |
| ATGGAGGGGATGATATGGAA+TGG | + | chr4.1:11010651-11010670 | MS.gene47963:CDS | 45.0% | |
| CAACACAAAGCCTATGCTTG+TGG | + | chr4.1:11009999-11010018 | MS.gene47963:CDS | 45.0% | |
| CACCAACCGTCTTGCTAAAT+CGG | + | chr4.1:11008680-11008699 | MS.gene47963:CDS | 45.0% | |
| CAGAAGCTAGACAGCATGAA+TGG | + | chr4.1:11009127-11009146 | MS.gene47963:CDS | 45.0% | |
| CATCTGATGCCGAAAACATG+TGG | - | chr4.1:11007856-11007875 | None:intergenic | 45.0% | |
| CCTGGTGAGATGTCTCAAAA+AGG | - | chr4.1:11009433-11009452 | None:intergenic | 45.0% | |
| CTTGTATGGAGGGGATGATA+TGG | + | chr4.1:11010646-11010665 | MS.gene47963:CDS | 45.0% | |
| GACTGCAATCAATGATGCCA+TGG | + | chr4.1:11009908-11009927 | MS.gene47963:CDS | 45.0% | |
| GATCCGTTGCCATTGTTTGA+TGG | + | chr4.1:11009494-11009513 | MS.gene47963:CDS | 45.0% | |
| GCATGCTAATGCATGGAGAT+GGG | - | chr4.1:11008217-11008236 | None:intergenic | 45.0% | |
| GCCATCTGTCGTCAACATTT+AGG | + | chr4.1:11009169-11009188 | MS.gene47963:CDS | 45.0% | |
| GGAATTGTTCCATCAACTCC+TGG | - | chr4.1:11011148-11011167 | None:intergenic | 45.0% | |
| GGCACAGTAAGAATGACACA+GGG | + | chr4.1:11010983-11011002 | MS.gene47963:CDS | 45.0% | |
| GGGATGATATGGAATGGATC+AGG | + | chr4.1:11010657-11010676 | MS.gene47963:CDS | 45.0% | |
| GGGTCATAAACTGAGTACCA+TGG | - | chr4.1:11009928-11009947 | None:intergenic | 45.0% | |
| GTAAGAATGACACAGGGCAA+AGG | + | chr4.1:11010989-11011008 | MS.gene47963:CDS | 45.0% | |
| TATGTAGGGAAAAGCAACCC+AGG | + | chr4.1:11010740-11010759 | MS.gene47963:CDS | 45.0% | |
| TCAGGTACATTAAGGAGGTG+TGG | + | chr4.1:11009971-11009990 | MS.gene47963:CDS | 45.0% | |
| TCCAAGTATTCCTATGGCTG+TGG | - | chr4.1:11008562-11008581 | None:intergenic | 45.0% | |
| TCCACTCATCCAACTCATCA+AGG | - | chr4.1:11011033-11011052 | None:intergenic | 45.0% | |
| TCCTCCCTTAAGCTAGAGAA+AGG | - | chr4.1:11010099-11010118 | None:intergenic | 45.0% | |
| TCGCCGACCCAACAATAATT+TGG | + | chr4.1:11010819-11010838 | MS.gene47963:CDS | 45.0% | |
| TCTCATCCCTGACATCATTC+AGG | + | chr4.1:11007985-11008004 | MS.gene47963:CDS | 45.0% | |
| TGCATGCTAATGCATGGAGA+TGG | - | chr4.1:11008218-11008237 | None:intergenic | 45.0% | |
| TGCTAATGCTATCACCACCT+TGG | - | chr4.1:11008610-11008629 | None:intergenic | 45.0% | |
| ! | AACCGATTTAGCAAGACGGT+TGG | - | chr4.1:11008685-11008704 | None:intergenic | 45.0% |
| ! | AAGGCTCCCTTTTCCACAAT+TGG | - | chr4.1:11009859-11009878 | None:intergenic | 45.0% |
| ! | AGCTATGCGCCACATGTTTT+CGG | + | chr4.1:11007844-11007863 | MS.gene47963:CDS | 45.0% |
| ! | GATGAGTTGGATGAGTGGAA+GGG | + | chr4.1:11011034-11011053 | MS.gene47963:CDS | 45.0% |
| ! | GTCTAGCTTCTGAGTCAAAC+TGG | - | chr4.1:11009119-11009138 | None:intergenic | 45.0% |
| ! | TCAACGTTTCAGGTGCTTCA+TGG | - | chr4.1:11008854-11008873 | None:intergenic | 45.0% |
| ! | TCATTGTTTCAGGTAACGGC+AGG | + | chr4.1:11010611-11010630 | MS.gene47963:intron | 45.0% |
| ! | TCCTTTCTCTAGCTTAAGGG+AGG | + | chr4.1:11010095-11010114 | MS.gene47963:CDS | 45.0% |
| ! | TCTTGCAAGTGTATGATGGG+TGG | + | chr4.1:11008522-11008541 | MS.gene47963:CDS | 45.0% |
| ! | TGATGAGTTGGATGAGTGGA+AGG | + | chr4.1:11011033-11011052 | MS.gene47963:CDS | 45.0% |
| !! | AGATGGCGAGCTGATTTTGA+AGG | - | chr4.1:11009156-11009175 | None:intergenic | 45.0% |
| !! | AGGTTAGCATTGAGGTGTTG+AGG | + | chr4.1:11009698-11009717 | MS.gene47963:intron | 45.0% |
| !! | AGTCTATCTTTAGGACGGTG+AGG | - | chr4.1:11010333-11010352 | None:intergenic | 45.0% |
| !! | CTTGCAAGTGTATGATGGGT+GGG | + | chr4.1:11008523-11008542 | MS.gene47963:CDS | 45.0% |
| !! | GGTGCAAATGGGTGTCATTA+AGG | + | chr4.1:11008109-11008128 | MS.gene47963:CDS | 45.0% |
| !! | TTGCAAGTGTATGATGGGTG+GGG | + | chr4.1:11008524-11008543 | MS.gene47963:CDS | 45.0% |
| !!! | CCTTTTTGAGACATCTCACC+AGG | + | chr4.1:11009430-11009449 | MS.gene47963:CDS | 45.0% |
| !!! | CTGTTTTGTTTCGGTCCACA+AGG | - | chr4.1:11009878-11009897 | None:intergenic | 45.0% |
| !!! | CTTTTGGGATCCAGATTCCA+TGG | + | chr4.1:11010400-11010419 | MS.gene47963:intron | 45.0% |
| AAGCCAGAATTCCCCTAGGT+TGG | - | chr4.1:11008643-11008662 | None:intergenic | 50.0% | |
| ACAGGGAAAGCAGGTGCAAA+TGG | + | chr4.1:11008097-11008116 | MS.gene47963:intron | 50.0% | |
| AGCATTTGCAGCCAACCTAG+GGG | + | chr4.1:11008629-11008648 | MS.gene47963:CDS | 50.0% | |
| CAGCATTTGCAGCCAACCTA+GGG | + | chr4.1:11008628-11008647 | MS.gene47963:CDS | 50.0% | |
| CAGGGAAAGCAGGTGCAAAT+GGG | + | chr4.1:11008098-11008117 | MS.gene47963:intron | 50.0% | |
| CCATCTTCTCAAGGCCATGT+TGG | + | chr4.1:11008776-11008795 | MS.gene47963:CDS | 50.0% | |
| CGATTTAGCAAGACGGTTGG+TGG | - | chr4.1:11008682-11008701 | None:intergenic | 50.0% | |
| CTACAAGCCAGAATTCCCCT+AGG | - | chr4.1:11008647-11008666 | None:intergenic | 50.0% | |
| CTATTCATGGGATGCCAAGG+TGG | + | chr4.1:11008593-11008612 | MS.gene47963:CDS | 50.0% | |
| GATGTGGATTTGGGGAAGCA+TGG | + | chr4.1:11010068-11010087 | MS.gene47963:CDS | 50.0% | |
| GATTGTCCGGTCTAAATCGG+TGG | - | chr4.1:11010526-11010545 | None:intergenic | 50.0% | |
| GCCACAGCCATAGGAATACT+TGG | + | chr4.1:11008558-11008577 | MS.gene47963:CDS | 50.0% | |
| GCTAATGCATGGAGATGGGA+GGG | - | chr4.1:11008213-11008232 | None:intergenic | 50.0% | |
| GCTTAAGGGAGGAAGCTCTT+TGG | + | chr4.1:11010106-11010125 | MS.gene47963:CDS | 50.0% | |
| GGATCCAACACCACAAGCAT+AGG | - | chr4.1:11010012-11010031 | None:intergenic | 50.0% | |
| GTGGAAGCAGTCAACGTTTC+AGG | - | chr4.1:11008864-11008883 | None:intergenic | 50.0% | |
| TGCGTCACGCAATTACTGCA+TGG | + | chr4.1:11010558-11010577 | MS.gene47963:intron | 50.0% | |
| TGCTAATGCATGGAGATGGG+AGG | - | chr4.1:11008214-11008233 | None:intergenic | 50.0% | |
| TTGTGGAAAAGGGAGCCTTG+TGG | + | chr4.1:11009860-11009879 | MS.gene47963:CDS | 50.0% | |
| ! | CCAACATGGCCTTGAGAAGA+TGG | - | chr4.1:11008779-11008798 | None:intergenic | 50.0% |
| ! | CTGCCTTCAGGTTAGCATTG+AGG | + | chr4.1:11009690-11009709 | MS.gene47963:intron | 50.0% |
| ! | CTTGTGGTGTTGGATCCACA+GGG | + | chr4.1:11010015-11010034 | MS.gene47963:CDS | 50.0% |
| ! | GCCTTGATGAGTTGGATGAG+TGG | + | chr4.1:11011029-11011048 | MS.gene47963:CDS | 50.0% |
| ! | GCTCTAGATTGGTTCTTCCG+TGG | - | chr4.1:11007827-11007846 | None:intergenic | 50.0% |
| ! | GGGTTAGGCTTGAAAGCATG+TGG | + | chr4.1:11010849-11010868 | MS.gene47963:CDS | 50.0% |
| ! | TTGTGGTGTTGGATCCACAG+GGG | + | chr4.1:11010016-11010035 | MS.gene47963:CDS | 50.0% |
| !! | GCATCATTGGCTTGGGTCAA+GGG | + | chr4.1:11008949-11008968 | MS.gene47963:CDS | 50.0% |
| !! | TCTTGGCCACCGATTTAGAC+CGG | + | chr4.1:11010517-11010536 | MS.gene47963:intron | 50.0% |
| !! | TGCAAGTGTATGATGGGTGG+GGG | + | chr4.1:11008525-11008544 | MS.gene47963:CDS | 50.0% |
| !! | TGTGGCGCATAGCTCTAGAT+TGG | - | chr4.1:11007838-11007857 | None:intergenic | 50.0% |
| AGGTTCACAACCTTCCCCTG+TGG | - | chr4.1:11010033-11010052 | None:intergenic | 55.0% | |
| CAATTGGAGCATGAGTGGCG+CGG | - | chr4.1:11007901-11007920 | None:intergenic | 55.0% | |
| CAGCCAACCTAGGGGAATTC+TGG | + | chr4.1:11008637-11008656 | MS.gene47963:CDS | 55.0% | |
| CAGGGATGAGAGAAGCTGCA+TGG | - | chr4.1:11007976-11007995 | None:intergenic | 55.0% | |
| GATGCTCATGCCACAGCCAT+AGG | + | chr4.1:11008549-11008568 | MS.gene47963:CDS | 55.0% | |
| GCAGCATTTGCAGCCAACCT+AGG | + | chr4.1:11008627-11008646 | MS.gene47963:CDS | 55.0% | |
| ! | GCTTGTGGTGTTGGATCCAC+AGG | + | chr4.1:11010014-11010033 | MS.gene47963:CDS | 55.0% |
| !! | GGCATCATTGGCTTGGGTCA+AGG | + | chr4.1:11008948-11008967 | MS.gene47963:CDS | 55.0% |
| !! | TGACCCTTCACTTCTGGAGC+CGG | + | chr4.1:11009942-11009961 | MS.gene47963:CDS | 55.0% |
| !! | TTCTGGAGCCGGCAAGTATC+AGG | + | chr4.1:11009953-11009972 | MS.gene47963:CDS | 55.0% |
| !! | TTGCCGGCTCCAGAAGTGAA+GGG | - | chr4.1:11009948-11009967 | None:intergenic | 55.0% |
| TGCTGAGTGTGGCCAGCCAA+TGG | + | chr4.1:11011183-11011202 | MS.gene47963:CDS | 60.0% | |
| ! | GGTGTTGGATCCACAGGGGA+AGG | + | chr4.1:11010020-11010039 | MS.gene47963:CDS | 60.0% |
| !! | CTTGCCGGCTCCAGAAGTGA+AGG | - | chr4.1:11009949-11009968 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 11007812 | 11011240 | 11007812 | ID=MS.gene47963 |
| chr4.1 | mRNA | 11007812 | 11011240 | 11007812 | ID=MS.gene47963.t1;Parent=MS.gene47963 |
| chr4.1 | exon | 11007812 | 11008006 | 11007812 | ID=MS.gene47963.t1.exon1;Parent=MS.gene47963.t1 |
| chr4.1 | CDS | 11007812 | 11008006 | 11007812 | ID=cds.MS.gene47963.t1;Parent=MS.gene47963.t1 |
| chr4.1 | exon | 11008101 | 11008205 | 11008101 | ID=MS.gene47963.t1.exon2;Parent=MS.gene47963.t1 |
| chr4.1 | CDS | 11008101 | 11008205 | 11008101 | ID=cds.MS.gene47963.t1;Parent=MS.gene47963.t1 |
| chr4.1 | exon | 11008519 | 11008970 | 11008519 | ID=MS.gene47963.t1.exon3;Parent=MS.gene47963.t1 |
| chr4.1 | CDS | 11008519 | 11008970 | 11008519 | ID=cds.MS.gene47963.t1;Parent=MS.gene47963.t1 |
| chr4.1 | exon | 11009081 | 11009190 | 11009081 | ID=MS.gene47963.t1.exon4;Parent=MS.gene47963.t1 |
| chr4.1 | CDS | 11009081 | 11009190 | 11009081 | ID=cds.MS.gene47963.t1;Parent=MS.gene47963.t1 |
| chr4.1 | exon | 11009390 | 11009532 | 11009390 | ID=MS.gene47963.t1.exon5;Parent=MS.gene47963.t1 |
| chr4.1 | CDS | 11009390 | 11009532 | 11009390 | ID=cds.MS.gene47963.t1;Parent=MS.gene47963.t1 |
| chr4.1 | exon | 11009700 | 11010191 | 11009700 | ID=MS.gene47963.t1.exon6;Parent=MS.gene47963.t1 |
| chr4.1 | CDS | 11009700 | 11010191 | 11009700 | ID=cds.MS.gene47963.t1;Parent=MS.gene47963.t1 |
| chr4.1 | exon | 11010623 | 11011240 | 11010623 | ID=MS.gene47963.t1.exon7;Parent=MS.gene47963.t1 |
| chr4.1 | CDS | 11010623 | 11011240 | 11010623 | ID=cds.MS.gene47963.t1;Parent=MS.gene47963.t1 |
| Gene Sequence |
| Protein sequence |
