Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48777.t1 | KEH29237.1 | 96.7 | 822 | 27 | 0 | 134 | 955 | 217 | 1038 | 7.50E-243 | 850.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48777.t1 | Q9SD62 | 37.8 | 405 | 219 | 13 | 573 | 944 | 612 | 1016 | 5.7e-66 | 254.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene48777.t1 | A0A072UHT4 | 96.7 | 822 | 27 | 0 | 134 | 955 | 217 | 1038 | 5.4e-243 | 850.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049993 | MS.gene48777 | 0.807077 | 6.03E-50 | -1.69E-46 |
| MS.gene050640 | MS.gene48777 | 0.825353 | 4.91E-54 | -1.69E-46 |
| MS.gene052011 | MS.gene48777 | -0.858926 | 5.89E-63 | -1.69E-46 |
| MS.gene052253 | MS.gene48777 | 0.845233 | 4.62E-59 | -1.69E-46 |
| MS.gene054102 | MS.gene48777 | 0.808909 | 2.46E-50 | -1.69E-46 |
| MS.gene054183 | MS.gene48777 | 0.856856 | 2.42E-62 | -1.69E-46 |
| MS.gene055217 | MS.gene48777 | 0.808853 | 2.53E-50 | -1.69E-46 |
| MS.gene056514 | MS.gene48777 | 0.80639 | 8.42E-50 | -1.69E-46 |
| MS.gene056659 | MS.gene48777 | 0.814623 | 1.40E-51 | -1.69E-46 |
| MS.gene056723 | MS.gene48777 | 0.803928 | 2.76E-49 | -1.69E-46 |
| MS.gene057476 | MS.gene48777 | 0.863389 | 2.58E-64 | -1.69E-46 |
| MS.gene057749 | MS.gene48777 | 0.805511 | 1.29E-49 | -1.69E-46 |
| MS.gene057825 | MS.gene48777 | 0.80919 | 2.14E-50 | -1.69E-46 |
| MS.gene05886 | MS.gene48777 | 0.832441 | 9.44E-56 | -1.69E-46 |
| MS.gene059420 | MS.gene48777 | 0.840473 | 8.51E-58 | -1.69E-46 |
| MS.gene059820 | MS.gene48777 | 0.804371 | 2.23E-49 | -1.69E-46 |
| MS.gene060038 | MS.gene48777 | 0.849712 | 2.71E-60 | -1.69E-46 |
| MS.gene060247 | MS.gene48777 | 0.80205 | 6.74E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 185 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAACACCAGTTAACATATTT+TGG | 0.068168 | 4.4:-73284192 | None:intergenic |
| CCTTAAATTTCCAACAAAAT+TGG | 0.117721 | 4.4:-73283417 | None:intergenic |
| TACCATTTGACCAAGTAATT+TGG | 0.142490 | 4.4:-73284146 | None:intergenic |
| GTTGCACATGTTAGCGATTT+TGG | 0.157375 | 4.4:+73284994 | MS.gene48777:CDS |
| TCTAATTTAGTCCAACTAAA+TGG | 0.163345 | 4.4:+73285457 | MS.gene48777:CDS |
| CGGAATAATTCCATCAAATA+TGG | 0.168128 | 4.4:+73283259 | MS.gene48777:CDS |
| ACAAGTGATTCTAAGGATTT+TGG | 0.177828 | 4.4:-73284217 | None:intergenic |
| CCAATACCTAGTACATTTAA+AGG | 0.190884 | 4.4:+73283707 | MS.gene48777:CDS |
| CTTGGCAATAACAATTTAAA+TGG | 0.191964 | 4.4:+73272584 | MS.gene48777:CDS |
| GAGCTTTGGCTCTGTGTATC+AGG | 0.197778 | 4.4:+73284621 | MS.gene48777:CDS |
| GAAGAGTTGAATATACTATT+TGG | 0.202154 | 4.4:-73283344 | None:intergenic |
| CAACTTCAATATTTGTTTCT+TGG | 0.206535 | 4.4:+73271225 | MS.gene48777:CDS |
| TGATGACATGTTGAAGATTT+TGG | 0.211435 | 4.4:-73283201 | None:intergenic |
| CTAGAATACCTTTATCTCTT+TGG | 0.224653 | 4.4:+73283921 | MS.gene48777:CDS |
| CTTTATCTCTTTGGAGTCTT+GGG | 0.234378 | 4.4:+73283930 | MS.gene48777:CDS |
| GTTAGGTTTCCAATTGATTT+AGG | 0.240325 | 4.4:-73283572 | None:intergenic |
| TAATATGAAGAACCTTTAAT+TGG | 0.244562 | 4.4:-73271152 | None:intergenic |
| CTTTGGTTCTTGGTGCAAAC+TGG | 0.256720 | 4.4:+73285605 | MS.gene48777:CDS |
| AAAATAAAGACTTTGGTTCT+TGG | 0.266854 | 4.4:+73285595 | MS.gene48777:CDS |
| GTGAATCTTCGCAACAATTC+AGG | 0.271267 | 4.4:-73285528 | None:intergenic |
| ACCTAACAGCAGAATTCTTC+TGG | 0.275623 | 4.4:+73283588 | MS.gene48777:CDS |
| TGCTCATGTTTCCAACTTCT+AGG | 0.278810 | 4.4:-73283643 | None:intergenic |
| TAAAATGGCTGACACAACTA+TGG | 0.280762 | 4.4:-73284440 | None:intergenic |
| ATGTCGGCTGCGCCAATTAA+AGG | 0.286692 | 4.4:+73271140 | MS.gene48777:CDS |
| ATCATTGCCTAATGCAATTA+TGG | 0.290621 | 4.4:+73285423 | MS.gene48777:CDS |
| ACACAAACTTTAGCTACTAT+TGG | 0.292115 | 4.4:+73285057 | MS.gene48777:CDS |
| TTGAAATATGATTTCTTGAT+AGG | 0.295936 | 4.4:-73284042 | None:intergenic |
| TGTCTTGTTGGATGAAAATA+TGG | 0.299504 | 4.4:+73284972 | MS.gene48777:CDS |
| AAGATGCACAAGTGATTCTA+AGG | 0.306063 | 4.4:-73284224 | None:intergenic |
| CATATTTGATGGAATTATTC+CGG | 0.308214 | 4.4:-73283258 | None:intergenic |
| GCTTCCTTCAAATTGATTGT+AGG | 0.309402 | 4.4:-73272663 | None:intergenic |
| CCAATTGATTTAGGAAGATT+TGG | 0.320328 | 4.4:-73283563 | None:intergenic |
| ACCATTTGACCAAGTAATTT+GGG | 0.321545 | 4.4:-73284145 | None:intergenic |
| TCATCCAACAAGACATTAGA+AGG | 0.325647 | 4.4:-73284964 | None:intergenic |
| CCTTTATCTCTTTGGAGTCT+TGG | 0.326955 | 4.4:+73283929 | MS.gene48777:CDS |
| CTTTCTGTGAATAATATAAC+TGG | 0.336245 | 4.4:+73283683 | MS.gene48777:CDS |
| GATGAATGCAACAATTAAAA+TGG | 0.337488 | 4.4:-73284455 | None:intergenic |
| GAAATATGACTTCTCTTATA+AGG | 0.345166 | 4.4:+73283870 | MS.gene48777:CDS |
| CTAATTTAGTCCAACTAAAT+GGG | 0.346349 | 4.4:+73285458 | MS.gene48777:CDS |
| CTTAAATTTCCAACAAAATT+GGG | 0.355377 | 4.4:-73283416 | None:intergenic |
| TTGTATAACAACAGCTTTAG+TGG | 0.358938 | 4.4:+73283167 | MS.gene48777:CDS |
| CCAAGACTCCAAAGAGATAA+AGG | 0.359672 | 4.4:-73283929 | None:intergenic |
| GCCATATCGATTCTTGCTTC+AGG | 0.364487 | 4.4:-73285550 | None:intergenic |
| ACTAGTCACAACAGCCTGTC+TGG | 0.369024 | 4.4:+73271315 | MS.gene48777:CDS |
| CAGCTATGGGATTATGCTAA+TGG | 0.375311 | 4.4:+73285327 | MS.gene48777:CDS |
| CAATTTGGTCCCCATTTAGT+TGG | 0.378525 | 4.4:-73285468 | None:intergenic |
| GCAGCAAACATATCATTTGT+TGG | 0.381727 | 4.4:-73285370 | None:intergenic |
| CCAAATCTTCCTAAATCAAT+TGG | 0.383025 | 4.4:+73283563 | MS.gene48777:CDS |
| TTGTCCCAAAATATGTTAAC+TGG | 0.388895 | 4.4:+73284187 | MS.gene48777:CDS |
| TGCAAACTGGGTCAAGTTAT+AGG | 0.391415 | 4.4:+73285618 | MS.gene48777:CDS |
| TGTGAAACAATAGATCAATT+TGG | 0.393770 | 4.4:-73285483 | None:intergenic |
| CCTTTAAATGTACTAGGTAT+TGG | 0.395797 | 4.4:-73283707 | None:intergenic |
| GTTTGCCACAAGGTGGTACT+TGG | 0.398398 | 4.4:-73284366 | None:intergenic |
| TCCCAAATTACTTGGTCAAA+TGG | 0.400316 | 4.4:+73284144 | MS.gene48777:CDS |
| GTTTGAAATCGTTTGAGGTA+TGG | 0.401142 | 4.4:-73271340 | None:intergenic |
| CCCAGAAGAATTCTGCTGTT+AGG | 0.401376 | 4.4:-73283589 | None:intergenic |
| GATACAAATGTAGATATTGT+AGG | 0.405664 | 4.4:-73283298 | None:intergenic |
| AAAGCCTTCTAATGTCTTGT+TGG | 0.406579 | 4.4:+73284960 | MS.gene48777:CDS |
| ACCTGAAGCAAGAATCGATA+TGG | 0.410716 | 4.4:+73285549 | MS.gene48777:CDS |
| ACTTTGTGAAATGAAGAGTT+TGG | 0.411576 | 4.4:+73283793 | MS.gene48777:CDS |
| GGTACTCTTCCACCTGAGAT+TGG | 0.416360 | 4.4:+73283992 | MS.gene48777:CDS |
| CGCAGCCGACATAACTCTCT+TGG | 0.419496 | 4.4:-73271129 | None:intergenic |
| TCTAATCAAAATAAAGACTT+TGG | 0.423550 | 4.4:+73285588 | MS.gene48777:CDS |
| TTTGAAATCGTTTGAGGTAT+GGG | 0.423931 | 4.4:-73271339 | None:intergenic |
| CTTATTGAATTTCGACTGGC+TGG | 0.427023 | 4.4:+73283371 | MS.gene48777:CDS |
| AAATCATGATTTCAAAGCAT+TGG | 0.427108 | 4.4:+73284780 | MS.gene48777:CDS |
| GGAAGCATTCCAAGATCAAT+TGG | 0.431449 | 4.4:+73272680 | MS.gene48777:CDS |
| TGTTGAAAATACTCTTGAAA+GGG | 0.432749 | 4.4:+73284504 | MS.gene48777:CDS |
| TTAACAACATGACTTCTTTG+AGG | 0.439899 | 4.4:+73272552 | MS.gene48777:CDS |
| GGTTCTATACTTGAGGAGAT+TGG | 0.440698 | 4.4:+73283116 | MS.gene48777:intron |
| AGTAATATCATCTTTGCCAT+TGG | 0.441496 | 4.4:-73284403 | None:intergenic |
| AAATCTACGACATCGAAATC+TGG | 0.442177 | 4.4:+73284735 | MS.gene48777:CDS |
| GGATCAATTCCCAAATTACT+TGG | 0.443794 | 4.4:+73284136 | MS.gene48777:CDS |
| GTGCAGTTACCAATTGATCT+TGG | 0.444621 | 4.4:-73272689 | None:intergenic |
| CTTGAAAAGAATAACCTCTC+TGG | 0.445313 | 4.4:+73283827 | MS.gene48777:CDS |
| TTAAATTGTTATTGCCAAGT+TGG | 0.448081 | 4.4:-73272580 | None:intergenic |
| AGGCTATATCCCATATTTGA+TGG | 0.449736 | 4.4:-73283269 | None:intergenic |
| TAACAACATGACTTCTTTGA+GGG | 0.449778 | 4.4:+73272553 | MS.gene48777:CDS |
| GCTCATGTTTCCAACTTCTA+GGG | 0.451916 | 4.4:-73283642 | None:intergenic |
| CAATACCTAGTACATTTAAA+GGG | 0.452674 | 4.4:+73283708 | MS.gene48777:CDS |
| CATGCAGAGTACGGATCTAA+AGG | 0.453592 | 4.4:+73285277 | MS.gene48777:intron |
| AGCTTTGGCTCTGTGTATCA+GGG | 0.454537 | 4.4:+73284622 | MS.gene48777:CDS |
| AGGTGGAATTCCTGTAGCCT+TGG | 0.454779 | 4.4:+73271191 | MS.gene48777:CDS |
| TTAGCCTACAATCAATTTGA+AGG | 0.454947 | 4.4:+73272659 | MS.gene48777:CDS |
| TTCTTGAAAGGTCCACCATC+AGG | 0.455010 | 4.4:-73284289 | None:intergenic |
| CTTTGTGAAATGAAGAGTTT+GGG | 0.456023 | 4.4:+73283794 | MS.gene48777:CDS |
| GGTGGAATTCCTGTAGCCTT+GGG | 0.458957 | 4.4:+73271192 | MS.gene48777:CDS |
| AAAGGAATTGTTTCTGTCAA+AGG | 0.461692 | 4.4:+73285295 | MS.gene48777:CDS |
| GAGAATCTGCAACGTGAGTA+AGG | 0.464558 | 4.4:-73284089 | None:intergenic |
| TTAGCAGAAAATGAACTGAA+TGG | 0.466013 | 4.4:+73284115 | MS.gene48777:CDS |
| TGCAACCCTTTAAATGTACT+AGG | 0.466627 | 4.4:-73283713 | None:intergenic |
| ATTAGTTCTAACGAGTTTGA+AGG | 0.468593 | 4.4:+73271171 | MS.gene48777:CDS |
| TCTGAAGGTTTCCAATAGAC+TGG | 0.469019 | 4.4:-73271275 | None:intergenic |
| GGTAATATTCCCCTAGAAGT+TGG | 0.469069 | 4.4:+73283632 | MS.gene48777:CDS |
| GAACTTGTGCAAGCAACAAA+TGG | 0.469768 | 4.4:+73284568 | MS.gene48777:CDS |
| AAAGGAGACGTGTACAGCTA+TGG | 0.472616 | 4.4:+73285313 | MS.gene48777:CDS |
| AGTAAGGAATTGATGGTTGT+TGG | 0.473059 | 4.4:-73284073 | None:intergenic |
| GGAATAATTCCATCAAATAT+GGG | 0.476374 | 4.4:+73283260 | MS.gene48777:CDS |
| GTACTCTTCCACCTGAGATT+GGG | 0.477147 | 4.4:+73283993 | MS.gene48777:CDS |
| GCTCTCAAATTCCCAATCTC+AGG | 0.477176 | 4.4:-73284004 | None:intergenic |
| CCTAACAGCAGAATTCTTCT+GGG | 0.478613 | 4.4:+73283589 | MS.gene48777:CDS |
| TTATCATATAATAGACTAGT+AGG | 0.479376 | 4.4:+73284259 | MS.gene48777:CDS |
| ATGAGAGTAATTTACTTGGA+AGG | 0.480017 | 4.4:+73284596 | MS.gene48777:CDS |
| CTTAGCAGCAATGGACTACA+AGG | 0.483614 | 4.4:+73283755 | MS.gene48777:CDS |
| TACTAGTCTATTATATGATA+AGG | 0.484012 | 4.4:-73284257 | None:intergenic |
| AGGTGGAAGAGTACCACTTA+AGG | 0.486735 | 4.4:-73283984 | None:intergenic |
| TAATCTTATTGAATTTCGAC+TGG | 0.489469 | 4.4:+73283367 | MS.gene48777:CDS |
| TTCTTATCTTGTTTGCCACA+AGG | 0.490763 | 4.4:-73284376 | None:intergenic |
| TGAGAGTAATTTACTTGGAA+GGG | 0.492856 | 4.4:+73284597 | MS.gene48777:CDS |
| AATGGTAGGCTTGATCTCCT+TGG | 0.494074 | 4.4:+73284162 | MS.gene48777:CDS |
| TTTGGTTCTTGGTGCAAACT+GGG | 0.494287 | 4.4:+73285606 | MS.gene48777:CDS |
| ATTGCTTAAATTTCTTGCAA+AGG | 0.498710 | 4.4:+73284857 | MS.gene48777:CDS |
| TGATTTCAAAGCATTGGTGC+TGG | 0.499941 | 4.4:+73284786 | MS.gene48777:CDS |
| GTGCTGGAGTTCATGTCAAA+TGG | 0.501179 | 4.4:+73284802 | MS.gene48777:CDS |
| GACATGTTTGAAATCGTTTG+AGG | 0.501529 | 4.4:-73271345 | None:intergenic |
| CAACGTGAGTAAGGAATTGA+TGG | 0.504037 | 4.4:-73284080 | None:intergenic |
| ACTGCAATCATCTCACTGTC+AGG | 0.504144 | 4.4:-73284652 | None:intergenic |
| TTCAATGAGAGTAATTTACT+TGG | 0.504857 | 4.4:+73284592 | MS.gene48777:CDS |
| TGAATCTTCGCAACAATTCA+GGG | 0.505796 | 4.4:-73285527 | None:intergenic |
| TCTTTGAGGGTGGTCCAACT+TGG | 0.509831 | 4.4:+73272566 | MS.gene48777:CDS |
| GTAGATATTGTAGGCTAGGA+AGG | 0.510005 | 4.4:-73283289 | None:intergenic |
| AAATGTAGATATTGTAGGCT+AGG | 0.510684 | 4.4:-73283293 | None:intergenic |
| TTTATCTCTTTGGAGTCTTG+GGG | 0.511364 | 4.4:+73283931 | MS.gene48777:CDS |
| CTGAAGGTTTCCAATAGACT+GGG | 0.514131 | 4.4:-73271274 | None:intergenic |
| GCAGCATCATGTGGAATTGA+TGG | 0.514436 | 4.4:+73283611 | MS.gene48777:CDS |
| ATGTTGAAAATACTCTTGAA+AGG | 0.520072 | 4.4:+73284503 | MS.gene48777:CDS |
| ATTTCCAGGTTCTATACTTG+AGG | 0.520589 | 4.4:+73283109 | MS.gene48777:intron |
| CTCATGTTTCCAACTTCTAG+GGG | 0.522550 | 4.4:-73283641 | None:intergenic |
| AAATTACTTGGTCAAATGGT+AGG | 0.523579 | 4.4:+73284148 | MS.gene48777:CDS |
| TGCCACAAGGTGGTACTTGG+AGG | 0.524350 | 4.4:-73284363 | None:intergenic |
| GTCATATTTCCCATACATGT+TGG | 0.526565 | 4.4:-73283857 | None:intergenic |
| CAGAACTAAGCTTGAAGACA+TGG | 0.526941 | 4.4:+73285392 | MS.gene48777:CDS |
| CTTGAAATAAATCAACTCTC+CGG | 0.526949 | 4.4:+73283239 | MS.gene48777:CDS |
| TAATGCAATTATGGAGGTGT+TGG | 0.531148 | 4.4:+73285432 | MS.gene48777:CDS |
| GAGAGTAATTTACTTGGAAG+GGG | 0.534355 | 4.4:+73284598 | MS.gene48777:CDS |
| TTGTCCTTCATCCATGAGCT+TGG | 0.541213 | 4.4:-73285022 | None:intergenic |
| AAGGAGACGTGTACAGCTAT+GGG | 0.542725 | 4.4:+73285314 | MS.gene48777:CDS |
| GAAGTCATGTTGTTAAGCGA+TGG | 0.543750 | 4.4:-73272545 | None:intergenic |
| GATAGATGTTGCATCTGCAT+TGG | 0.547489 | 4.4:+73284891 | MS.gene48777:CDS |
| GTTGAAAATACTCTTGAAAG+GGG | 0.548932 | 4.4:+73284505 | MS.gene48777:CDS |
| CTAGTCACAACAGCCTGTCT+GGG | 0.549993 | 4.4:+73271316 | MS.gene48777:CDS |
| CTTGGTGTTAACAATTTCAG+TGG | 0.551700 | 4.4:+73271243 | MS.gene48777:CDS |
| TGAGCTGTGAATTTCTTGAA+AGG | 0.553318 | 4.4:-73284301 | None:intergenic |
| ATTGCCAAGCTCATGGATGA+AGG | 0.555712 | 4.4:+73285018 | MS.gene48777:CDS |
| AGTGAAAGTAATTGATTCAG+AGG | 0.556847 | 4.4:+73284672 | MS.gene48777:CDS |
| TTCTTCTGGGCAGCATCATG+TGG | 0.558333 | 4.4:+73283602 | MS.gene48777:CDS |
| TTTGAGGTATGGGCCCAGAC+AGG | 0.558902 | 4.4:-73271329 | None:intergenic |
| CTCAAATTCCCAATCTCAGG+TGG | 0.560204 | 4.4:-73284001 | None:intergenic |
| AACACCTCCATAATTGCATT+AGG | 0.576041 | 4.4:-73285430 | None:intergenic |
| CAACATGACTTCTTTGAGGG+TGG | 0.583208 | 4.4:+73272556 | MS.gene48777:CDS |
| TTCAACATGTCATCACTCAA+AGG | 0.584272 | 4.4:+73283209 | MS.gene48777:CDS |
| GCATTGGAATATCTCCATCA+TGG | 0.584950 | 4.4:+73284907 | MS.gene48777:CDS |
| CAAATTTCTACAATTTGACA+AGG | 0.586435 | 4.4:-73283507 | None:intergenic |
| CAAATGGAAGTGTGGACGAT+TGG | 0.587061 | 4.4:+73284818 | MS.gene48777:CDS |
| TCATGGTTCTTCAATACCCG+TGG | 0.598925 | 4.4:+73284924 | MS.gene48777:CDS |
| AAAATGGCTGACACAACTAT+GGG | 0.602377 | 4.4:-73284439 | None:intergenic |
| AGTTCTAACGAGTTTGAAGG+TGG | 0.604646 | 4.4:+73271174 | MS.gene48777:CDS |
| AGTTTCCAAGAGAGTTATGT+CGG | 0.605112 | 4.4:+73271124 | MS.gene48777:CDS |
| CGGGTATTGAAGAACCATGA+TGG | 0.605653 | 4.4:-73284921 | None:intergenic |
| ACAAGATAAGAAAATGCCAA+TGG | 0.608249 | 4.4:+73284387 | MS.gene48777:CDS |
| AGAAGAAATGACCTGGTGCA+AGG | 0.611045 | 4.4:-73285083 | None:intergenic |
| TCTCTTATAAGGATACATGT+AGG | 0.612329 | 4.4:+73283881 | MS.gene48777:CDS |
| TAATTTAGTCCAACTAAATG+GGG | 0.612379 | 4.4:+73285459 | MS.gene48777:CDS |
| CAAGGTGGTACTTGGAGGCG+AGG | 0.613531 | 4.4:-73284358 | None:intergenic |
| CTGGCTGGCAATGCATTCAG+TGG | 0.615209 | 4.4:+73283386 | MS.gene48777:CDS |
| GCTTTGGCTCTGTGTATCAG+GGG | 0.615606 | 4.4:+73284623 | MS.gene48777:CDS |
| TGGAATTCCTGTAGCCTTGG+GGG | 0.616383 | 4.4:+73271194 | MS.gene48777:CDS |
| GTGGAATTCCTGTAGCCTTG+GGG | 0.618080 | 4.4:+73271193 | MS.gene48777:CDS |
| CTAGTAGGAGAGATTCCTGA+TGG | 0.619190 | 4.4:+73284274 | MS.gene48777:CDS |
| GCTATCTTGATAAACTTGAG+TGG | 0.619419 | 4.4:+73283138 | MS.gene48777:CDS |
| CGCCTCCAAGTACCACCTTG+TGG | 0.621596 | 4.4:+73284361 | MS.gene48777:CDS |
| TTTAGATCACAATGAACCAC+GGG | 0.630768 | 4.4:-73284940 | None:intergenic |
| AGCTTGAAGACATGGATCAG+TGG | 0.633639 | 4.4:+73285400 | MS.gene48777:CDS |
| TTATCTTGTTTGCCACAAGG+TGG | 0.634543 | 4.4:-73284373 | None:intergenic |
| GTAGGAGAGATTCCTGATGG+TGG | 0.640402 | 4.4:+73284277 | MS.gene48777:CDS |
| AGTCTATTGGAAACCTTCAG+AGG | 0.645257 | 4.4:+73271277 | MS.gene48777:CDS |
| ACTATTGGATACCTTGCACC+AGG | 0.647071 | 4.4:+73285072 | MS.gene48777:CDS |
| AGAGTAATTTACTTGGAAGG+GGG | 0.655007 | 4.4:+73284599 | MS.gene48777:CDS |
| ATTGCCTAATGCAATTATGG+AGG | 0.668436 | 4.4:+73285426 | MS.gene48777:CDS |
| GAAGGTTTCCAATAGACTGG+GGG | 0.675344 | 4.4:-73271272 | None:intergenic |
| TGAAGGTTTCCAATAGACTG+GGG | 0.678678 | 4.4:-73271273 | None:intergenic |
| CTTTAGATCACAATGAACCA+CGG | 0.682084 | 4.4:-73284941 | None:intergenic |
| GTTCATGTCAAATGGAAGTG+TGG | 0.686012 | 4.4:+73284810 | MS.gene48777:CDS |
| TTGCACAATGGAGTACTCTG+CGG | 0.701160 | 4.4:+73284331 | MS.gene48777:CDS |
| ATGTTGGTAAAACTCCAGAG+AGG | 0.774434 | 4.4:-73283841 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 73271088 | 73285639 | 73271088 | ID=MS.gene48777 |
| chr4.4 | mRNA | 73271088 | 73285639 | 73271088 | ID=MS.gene48777.t1;Parent=MS.gene48777 |
| chr4.4 | exon | 73271088 | 73271408 | 73271088 | ID=MS.gene48777.t1.exon1;Parent=MS.gene48777.t1 |
| chr4.4 | CDS | 73271088 | 73271408 | 73271088 | ID=cds.MS.gene48777.t1;Parent=MS.gene48777.t1 |
| chr4.4 | exon | 73272537 | 73272752 | 73272537 | ID=MS.gene48777.t1.exon2;Parent=MS.gene48777.t1 |
| chr4.4 | CDS | 73272537 | 73272752 | 73272537 | ID=cds.MS.gene48777.t1;Parent=MS.gene48777.t1 |
| chr4.4 | exon | 73283117 | 73285093 | 73283117 | ID=MS.gene48777.t1.exon3;Parent=MS.gene48777.t1 |
| chr4.4 | CDS | 73283117 | 73285093 | 73283117 | ID=cds.MS.gene48777.t1;Parent=MS.gene48777.t1 |
| chr4.4 | exon | 73285284 | 73285639 | 73285284 | ID=MS.gene48777.t1.exon4;Parent=MS.gene48777.t1 |
| chr4.4 | CDS | 73285284 | 73285639 | 73285284 | ID=cds.MS.gene48777.t1;Parent=MS.gene48777.t1 |
| Gene Sequence |
| Protein sequence |
