AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060247


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060247.t1 MTR_5g074130 89.365 677 71 1 1 676 1 677 0.0 1246
MS.gene060247.t1 MTR_5g073920 55.310 678 275 7 3 673 2 658 0.0 727
MS.gene060247.t1 MTR_3g464010 51.590 692 294 10 3 676 2 670 0.0 662
MS.gene060247.t1 MTR_5g093530 82.254 355 40 1 323 677 244 575 0.0 600
MS.gene060247.t1 MTR_5g093530 86.719 256 33 1 1 255 1 256 1.50e-149 446
MS.gene060247.t1 MTR_5g073460 49.354 697 318 13 3 672 2 690 0.0 600
MS.gene060247.t1 MTR_5g073480 52.345 533 225 12 9 516 6 534 9.64e-171 502
MS.gene060247.t1 MTR_5g073620 48.818 592 245 11 9 555 6 584 8.42e-168 509
MS.gene060247.t1 MTR_5g073620 37.870 338 181 7 342 673 753 1067 8.27e-56 206
MS.gene060247.t1 MTR_5g073960 52.927 427 184 6 3 424 2 416 7.32e-137 408
MS.gene060247.t1 MTR_5g073450 47.273 440 210 9 248 672 199 631 4.97e-114 357
MS.gene060247.t1 MTR_3g031130 46.171 444 207 11 247 672 188 617 2.03e-105 334
MS.gene060247.t1 MTR_5g073810 43.791 459 187 9 5 434 4 420 4.70e-105 326
MS.gene060247.t1 MTR_5g073770 42.263 433 174 12 9 424 6 379 2.33e-85 273
MS.gene060247.t1 MTR_5g073610 48.012 327 143 8 10 326 7 316 5.69e-85 271
MS.gene060247.t1 MTR_5g073880 56.044 273 93 6 1 268 1 251 1.03e-84 268
MS.gene060247.t1 MTR_5g074450 60.976 246 72 6 7 228 6 251 1.50e-83 273
MS.gene060247.t1 MTR_5g073750 51.087 276 128 4 10 278 7 282 6.79e-82 261
MS.gene060247.t1 MTR_5g073470 44.237 321 119 6 5 320 4 269 3.76e-74 240
MS.gene060247.t1 MTR_5g074190 71.098 173 46 2 5 176 1 170 7.14e-72 241
MS.gene060247.t1 MTR_5g074190 31.271 291 135 6 386 675 184 410 2.20e-30 125
MS.gene060247.t1 MTR_5g073900 39.948 383 192 9 268 648 1 347 1.14e-71 236
MS.gene060247.t1 MTR_5g073840 55.769 208 86 3 4 205 3 210 1.07e-68 226
MS.gene060247.t1 MTR_5g073820 33.210 542 186 16 12 519 30 429 5.97e-63 217
MS.gene060247.t1 MTR_5g074150 65.605 157 53 1 14 169 24 180 3.15e-60 202
MS.gene060247.t1 MTR_5g073780 45.339 236 115 3 438 673 1 222 1.02e-59 200
MS.gene060247.t1 MTR_1g090620 29.677 465 288 10 232 672 190 639 5.91e-59 210
MS.gene060247.t1 MTR_5g074090 61.392 158 59 1 14 169 13 170 9.77e-59 198
MS.gene060247.t1 MTR_5g073650 38.483 356 150 7 106 434 5 318 1.88e-58 200
MS.gene060247.t1 MTR_7g026630 30.819 464 284 11 232 672 199 648 9.56e-56 201
MS.gene060247.t1 MTR_1g057560 31.323 431 276 8 253 672 202 623 2.43e-55 200
MS.gene060247.t1 MTR_8g021330 28.125 448 292 10 250 672 161 603 9.56e-52 189
MS.gene060247.t1 MTR_5g074200 51.053 190 92 1 5 193 1 190 2.28e-50 178
MS.gene060247.t1 MTR_5g073860 48.205 195 92 2 4 192 17 208 2.86e-50 180
MS.gene060247.t1 MTR_4g103540 29.120 443 292 9 245 672 243 678 3.59e-49 183
MS.gene060247.t1 MTR_5g073660 41.852 270 87 6 12 251 30 259 1.89e-48 172
MS.gene060247.t1 MTR_6g033310 28.635 447 278 10 256 672 288 723 1.83e-44 170
MS.gene060247.t1 MTR_7g013770 26.726 449 295 10 249 672 225 664 2.02e-42 164
MS.gene060247.t1 MTR_5g074070 44.608 204 77 5 4 204 3 173 2.41e-42 154
MS.gene060247.t1 MTR_1g117090 25.957 470 280 12 261 673 209 667 1.41e-37 149
MS.gene060247.t1 MTR_6g078770 40.816 196 113 3 19 211 109 304 1.49e-34 135
MS.gene060247.t1 MTR_5g073500 48.366 153 49 2 14 166 1 123 1.83e-34 127
MS.gene060247.t1 MTR_3g025900 25.799 438 298 9 250 672 181 606 2.28e-33 136
MS.gene060247.t1 MTR_1g067480 23.503 451 301 10 250 672 166 600 2.84e-33 135
MS.gene060247.t1 MTR_1g067460 24.070 457 296 13 250 674 164 601 4.04e-33 135
MS.gene060247.t1 MTR_6g078610 43.678 174 96 2 18 189 593 766 3.20e-32 134
MS.gene060247.t1 MTR_2g096230 21.973 446 312 9 245 672 152 579 3.89e-31 129
MS.gene060247.t1 MTR_4g062330 24.263 441 286 11 261 672 181 602 6.34e-31 129
MS.gene060247.t1 MTR_5g093540 44.805 154 60 2 5 158 1 129 4.78e-29 116
MS.gene060247.t1 MTR_6g075870 39.429 175 102 4 1 172 596 769 5.81e-27 117
MS.gene060247.t1 MTR_5g073490 37.576 165 84 3 509 671 4 151 7.80e-24 98.6
MS.gene060247.t1 MTR_4g019260 73.333 60 16 0 331 390 10 69 1.13e-23 95.1
MS.gene060247.t1 MTR_4g023690 57.500 80 32 2 63 141 8 86 1.38e-21 89.7
MS.gene060247.t1 MTR_1g009620 20.588 476 350 10 206 668 187 647 1.02e-18 90.9
MS.gene060247.t1 MTR_6g078770 31.633 196 100 4 19 211 109 273 2.70e-18 87.0
MS.gene060247.t1 MTR_6g078620 33.523 176 87 3 6 180 79 225 6.82e-18 84.0
MS.gene060247.t1 MTR_4g008260 22.917 384 260 11 308 672 273 639 5.25e-17 85.5
MS.gene060247.t1 MTR_5g073830 52.500 80 37 1 8 86 7 86 1.57e-16 79.7
MS.gene060247.t1 MTR_5g073850 36.879 141 74 2 85 225 14 139 5.99e-14 70.9
MS.gene060247.t1 MTR_0229s0040 23.837 172 129 1 499 668 31 202 6.74e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060247.t1 AT5G58430 44.912 452 225 11 234 672 176 616 8.06e-104 329
MS.gene060247.t1 AT1G07000 36.054 441 254 12 248 677 176 599 1.14e-67 233
MS.gene060247.t1 AT5G50380 30.562 445 287 10 245 672 230 669 2.58e-56 203
MS.gene060247.t1 AT5G52340 30.415 434 274 11 253 672 202 621 1.01e-54 198
MS.gene060247.t1 AT5G03540 29.655 435 283 8 253 672 87 513 5.48e-53 191
MS.gene060247.t1 AT5G03540 29.655 435 283 8 253 672 202 628 4.07e-52 191
MS.gene060247.t1 AT5G03540 29.655 435 283 8 253 672 228 654 5.06e-52 191
MS.gene060247.t1 AT1G72470 30.649 447 281 11 250 672 178 619 5.39e-51 187
MS.gene060247.t1 AT1G54090 28.859 447 287 11 250 672 170 609 1.52e-50 186
MS.gene060247.t1 AT5G13150 29.754 447 272 12 255 672 209 642 1.42e-49 184
MS.gene060247.t1 AT3G14090 28.146 437 288 11 250 665 173 604 8.22e-49 181
MS.gene060247.t1 AT5G13990 26.908 498 324 15 189 672 208 679 2.34e-43 167
MS.gene060247.t1 AT5G52350 28.140 430 289 10 253 672 156 575 6.43e-42 161
MS.gene060247.t1 AT2G39380 25.322 466 316 9 229 672 153 608 2.56e-39 154
MS.gene060247.t1 AT3G29400 25.216 464 297 10 247 672 194 645 8.93e-37 147
MS.gene060247.t1 AT3G55150 27.107 439 284 11 257 672 183 608 4.04e-35 141
MS.gene060247.t1 AT5G61010 25.169 445 285 12 251 672 205 624 3.70e-33 135
MS.gene060247.t1 AT5G61010 25.169 445 285 12 251 672 205 624 3.70e-33 135
MS.gene060247.t1 AT1G07725 25.248 404 268 8 256 641 175 562 1.94e-32 133
MS.gene060247.t1 AT2G28640 25.227 440 290 11 256 673 155 577 2.34e-31 130
MS.gene060247.t1 AT3G09520 23.297 455 307 12 248 672 162 604 2.38e-31 130
MS.gene060247.t1 AT3G09530 23.673 452 310 12 248 672 157 600 8.53e-30 125
MS.gene060247.t1 AT5G59730 24.053 449 292 14 256 672 165 596 1.01e-27 119
MS.gene060247.t1 AT5G59730 24.053 449 292 14 256 672 165 596 1.44e-27 118
MS.gene060247.t1 AT4G31540 23.404 376 254 10 319 673 293 655 2.02e-20 96.7
MS.gene060247.t1 AT2G28650 24.427 393 270 10 265 646 156 532 6.69e-20 94.4
MS.gene060247.t1 AT1G51640 24.425 348 236 8 319 645 253 594 2.67e-14 77.0

Find 106 sgRNAs with CRISPR-Local

Find 127 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAGTATATGGAATCTTTAT+TGG 0.197903 5.4:+59987397 MS.gene060247:CDS
TTGCTTCTCCTAATCTGTTT+TGG 0.232404 5.4:-59986739 None:intergenic
GAACCAATCGTTACCAAATA+TGG 0.238501 5.4:-59987116 None:intergenic
TTTAATTAAAAGGTGGGATT+TGG 0.239403 5.4:+59987090 MS.gene060247:CDS
TGGGATTTGGAAACCATATT+TGG 0.243486 5.4:+59987103 MS.gene060247:CDS
AAGTTGCAGTTATTCATTAT+TGG 0.254047 5.4:+59985945 MS.gene060247:CDS
AATACCTTGCTGCCAGTATA+TGG 0.291063 5.4:+59987385 MS.gene060247:CDS
AGCAAGGTCTCTGTACTCTT+TGG 0.301069 5.4:-59987023 None:intergenic
TGTCTAATCAATAGATTATT+CGG 0.316039 5.4:+59986365 MS.gene060247:CDS
ACATAGAAGATTTAATTAAA+AGG 0.323041 5.4:+59987080 MS.gene060247:CDS
CCACTTGGGTGCTGATTCTT+CGG 0.339621 5.4:+59986694 MS.gene060247:CDS
ACAACAGATGAAATGGATAA+TGG 0.343765 5.4:+59986970 MS.gene060247:CDS
GATAATTTAGTTTCAAGAAT+AGG 0.346022 5.4:-59986769 None:intergenic
TGCTTCAGCTGCTGTTGGAC+TGG 0.347370 5.4:+59985563 MS.gene060247:CDS
CTCTGATGCCACATCATCAT+TGG 0.349680 5.4:-59987245 None:intergenic
GACTCTGATTTGATGTTGCC+TGG 0.369550 5.4:+59986203 MS.gene060247:CDS
ACTACTCCATTATTCACCTT+TGG 0.373276 5.4:-59986929 None:intergenic
TGAATTCCAAGATGAAAATT+CGG 0.373996 5.4:+59986037 MS.gene060247:CDS
GCTAATCAGTATATTAGATA+TGG 0.374693 5.4:+59987448 MS.gene060247:CDS
GTTGGACAACAGTGACTATC+TGG 0.377423 5.4:+59987219 MS.gene060247:CDS
CGAGCAACTTTCTTTGCTGC+TGG 0.378507 5.4:-59986806 None:intergenic
TGAAGGGAGTTGATCAAATC+TGG 0.381983 5.4:-59986254 None:intergenic
CTTTCTTTGCTGCTGGGACT+CGG 0.390404 5.4:-59986799 None:intergenic
CCAATAAAGATTCCATATAC+TGG 0.390848 5.4:-59987397 None:intergenic
TATAAAGATTAAGGTCTTGT+TGG 0.392269 5.4:-59987159 None:intergenic
GAATATCCAAAGGTGAATAA+TGG 0.394530 5.4:+59986923 MS.gene060247:CDS
CTGATGGAAGCCCTTCCATT+TGG 0.396769 5.4:+59986615 MS.gene060247:CDS
TCATGAAACCGCGAAGTTCA+TGG 0.399822 5.4:+59986274 MS.gene060247:CDS
ACAGATTAGGAGAAGCAATC+AGG 0.400494 5.4:+59986744 MS.gene060247:CDS
AACTCATCGATCATGATGTT+AGG 0.400629 5.4:-59986227 None:intergenic
TGTATATGATAAGAAGCTTA+AGG 0.401177 5.4:+59987339 MS.gene060247:CDS
TGTACAGAGTTCAGTCGAAT+TGG 0.407634 5.4:+59987314 MS.gene060247:CDS
GTTTCTGATCGAAAGCAGTT+AGG 0.430631 5.4:+59987504 MS.gene060247:CDS
TCACAGAGTCGTTGTTCAAA+TGG 0.432437 5.4:-59986494 None:intergenic
GGATTTGCTTCAGCTGCTGT+TGG 0.441246 5.4:+59985558 MS.gene060247:CDS
CAGTTATTCATTATTGGAGC+AGG 0.449950 5.4:+59985951 MS.gene060247:CDS
AGAAGATTTAATTAAAAGGT+GGG 0.450847 5.4:+59987084 MS.gene060247:CDS
GTTACAGTCCAAAACAGATT+AGG 0.467068 5.4:+59986731 MS.gene060247:CDS
AATTTCTTCTACAGAAGAAA+AGG 0.469100 5.4:-59986006 None:intergenic
CCATTGCAGAAGGAAATGTT+TGG 0.471945 5.4:+59986337 MS.gene060247:CDS
GCGAAGTTCATGGTAAGTGC+TGG 0.476769 5.4:+59986284 MS.gene060247:CDS
AAACCATATTTGGTAACGAT+TGG 0.478817 5.4:+59987113 MS.gene060247:CDS
GAGCAACTTTCTTTGCTGCT+GGG 0.482217 5.4:-59986805 None:intergenic
TTGAATAAGCACCAAATGGA+AGG 0.483668 5.4:-59986626 None:intergenic
AAGCGACGTAGCTAATGATC+TGG 0.484649 5.4:-59986859 None:intergenic
CCAAACATTTCCTTCTGCAA+TGG 0.491403 5.4:-59986337 None:intergenic
GAAATGAGGCTATATGCATC+TGG 0.496530 5.4:-59985807 None:intergenic
GGAAGGTTCCGTGATTGTCT+TGG 0.497714 5.4:+59987418 MS.gene060247:CDS
CTAATGATCTGGACCACCAT+TGG 0.498577 5.4:-59986848 None:intergenic
GAGTTTGTCGAGGCAAACTC+AGG 0.499709 5.4:+59985857 MS.gene060247:CDS
TATATGGAATCTTTATTGGA+AGG 0.500016 5.4:+59987401 MS.gene060247:CDS
ACGAAGGTATGGAGATTTGT+CGG 0.506373 5.4:+59985537 MS.gene060247:CDS
TTCGCTGATGCAGTTGCTGA+TGG 0.507020 5.4:+59986599 MS.gene060247:CDS
GGCTGATGCAGACGAAGGTA+TGG 0.509287 5.4:+59985526 MS.gene060247:CDS
CATGGTAAGTGCTGGGTTCG+AGG 0.512449 5.4:+59986292 MS.gene060247:CDS
TCTGATGCCACATCATCATT+GGG 0.515118 5.4:-59987244 None:intergenic
AAGAAAGTTGCTCGGTCTGA+TGG 0.517438 5.4:+59986815 MS.gene060247:CDS
ACTCATCGATCATGATGTTA+GGG 0.526299 5.4:-59986226 None:intergenic
GGAAAGAGTCTAGAAGTCTT+CGG 0.536286 5.4:+59985706 MS.gene060247:CDS
CAGATTAGGAGAAGCAATCA+GGG 0.537526 5.4:+59986745 MS.gene060247:CDS
GGGTGCTGATTCTTCGGTGA+AGG 0.537582 5.4:+59986700 MS.gene060247:CDS
GAACTTCGCGGTTTCATGAA+GGG 0.539523 5.4:-59986270 None:intergenic
TGAACTTCGCGGTTTCATGA+AGG 0.542330 5.4:-59986271 None:intergenic
ACATCGGGAATGAAAATCAA+AGG 0.543866 5.4:+59986402 MS.gene060247:CDS
TGAATAAGCACCAAATGGAA+GGG 0.545777 5.4:-59986625 None:intergenic
TAGAAGATTTAATTAAAAGG+TGG 0.546097 5.4:+59987083 MS.gene060247:CDS
TCGATCATGATGTTAGGGCC+AGG 0.553016 5.4:-59986221 None:intergenic
TTGCAGAAGGAAATGTTTGG+AGG 0.555339 5.4:+59986340 MS.gene060247:CDS
CAAAGGCAGCACAAGAAATG+AGG 0.556020 5.4:-59985821 None:intergenic
CGATCAGAAACAAATTGTTG+AGG 0.556368 5.4:-59987492 None:intergenic
GATTGCAGAAGATTAACATC+GGG 0.561302 5.4:+59986387 MS.gene060247:CDS
CGAAGTTCATGGTAAGTGCT+GGG 0.566318 5.4:+59986285 MS.gene060247:CDS
GCTACGTCGCTTCTGCATGT+AGG 0.571994 5.4:+59986870 MS.gene060247:CDS
TGAAAAGATTGCGCAAAGCA+AGG 0.573006 5.4:-59987039 None:intergenic
CATCGGGAATGAAAATCAAA+GGG 0.583551 5.4:+59986403 MS.gene060247:CDS
AGCACTTACCATGAACTTCG+CGG 0.585018 5.4:-59986282 None:intergenic
ATGTATACATCCATTGCAGA+AGG 0.591121 5.4:+59986327 MS.gene060247:CDS
GGAAGAAATAATAATATCAG+TGG 0.606646 5.4:+59987360 MS.gene060247:CDS
TTGATATCGAAATTCCACTT+GGG 0.612668 5.4:+59986680 MS.gene060247:CDS
TTTGATATCGAAATTCCACT+TGG 0.613822 5.4:+59986679 MS.gene060247:CDS
AAACAACGAGTAGCAGAGGA+GGG 0.616280 5.4:-59986536 None:intergenic
AACTCAGGGTGGATTCGAAG+TGG 0.619524 5.4:+59985872 MS.gene060247:CDS
CAGCAGCAAAGAAAGTTGCT+CGG 0.622781 5.4:+59986807 MS.gene060247:CDS
TGATGGTCGACATCATCCAA+TGG 0.628831 5.4:+59986832 MS.gene060247:CDS
CATGAATACCAAGACAATCA+CGG 0.629179 5.4:-59987426 None:intergenic
CCGAAGAATCAGCACCCAAG+TGG 0.635114 5.4:-59986694 None:intergenic
GATTCCATATACTGGCAGCA+AGG 0.639874 5.4:-59987389 None:intergenic
TCAGCCATGTCTGAATTCTG+AGG 0.645050 5.4:-59985509 None:intergenic
GAAACAACGAGTAGCAGAGG+AGG 0.648023 5.4:-59986537 None:intergenic
GGATTGCAGAAGATTAACAT+CGG 0.649736 5.4:+59986386 MS.gene060247:CDS
TTGTCGAGGCAAACTCAGGG+TGG 0.654077 5.4:+59985861 MS.gene060247:CDS
AGTTTGTCGAGGCAAACTCA+GGG 0.654386 5.4:+59985858 MS.gene060247:CDS
TGTGAAACAACGAGTAGCAG+AGG 0.656858 5.4:-59986540 None:intergenic
TCTGGCACCCAATGATGATG+TGG 0.663170 5.4:+59987237 MS.gene060247:CDS
TGCTACTCGTTGTTTCACAG+AGG 0.669048 5.4:+59986544 MS.gene060247:CDS
GACATGGCTGATGCAGACGA+AGG 0.670723 5.4:+59985521 MS.gene060247:CDS
GAAGCTGAAACGTTGCTCCG+TGG 0.670987 5.4:-59986571 None:intergenic
GCAAAACTTGTTCTAGCGTG+CGG 0.672133 5.4:-59986898 None:intergenic
ACTCAGTGACATGATAGCAA+AGG 0.674248 5.4:-59985838 None:intergenic
AACAACGAGTAGCAGAGGAG+GGG 0.675729 5.4:-59986535 None:intergenic
TCATGTCACTGAGTTTGTCG+AGG 0.676612 5.4:+59985847 MS.gene060247:CDS
TGGTCGACATCATCCAATGG+TGG 0.692831 5.4:+59986835 MS.gene060247:CDS
AGGGAGTTGATCAAATCTGG+AGG 0.695828 5.4:-59986251 None:intergenic
GAAGTAAAACGAATAGACAG+AGG 0.696789 5.4:-59985766 None:intergenic
TATAAGGAAGAACATGACAG+TGG 0.703912 5.4:+59985479 None:intergenic
TGTTCCTCAGAATTCAGACA+TGG 0.707083 5.4:+59985505 MS.gene060247:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATAGAAGATTTAATTAAA+AGG + chr5.4:59987080-59987099 MS.gene060247:CDS 15.0%
!! ATCTTTATAAAAAAAAATCG+TGG + chr5.4:59987173-59987192 MS.gene060247:CDS 15.0%
!! TAGATATTGTGATTAAAAAA+TGG + chr5.4:59986435-59986454 MS.gene060247:CDS 15.0%
!!! TGATTTTGTATGAAAATATA+TGG + chr5.4:59985685-59985704 MS.gene060247:CDS 15.0%
!! AGAAGATTTAATTAAAAGGT+GGG + chr5.4:59987084-59987103 MS.gene060247:CDS 20.0%
!! TAAAAAAAAATCGTGGAATA+TGG + chr5.4:59987180-59987199 MS.gene060247:CDS 20.0%
!! TAGAAGATTTAATTAAAAGG+TGG + chr5.4:59987083-59987102 MS.gene060247:CDS 20.0%
!! TGTCTAATCAATAGATTATT+CGG + chr5.4:59986365-59986384 MS.gene060247:CDS 20.0%
!!! ATCTTTTCATGATGAATAAT+AGG + chr5.4:59987053-59987072 MS.gene060247:CDS 20.0%
!!! GATAATTTAGTTTCAAGAAT+AGG - chr5.4:59986772-59986791 None:intergenic 20.0%
! AAGTTGCAGTTATTCATTAT+TGG + chr5.4:59985945-59985964 MS.gene060247:CDS 25.0%
! AATTTCTTCTACAGAAGAAA+AGG - chr5.4:59986009-59986028 None:intergenic 25.0%
! GCTAATCAGTATATTAGATA+TGG + chr5.4:59987448-59987467 MS.gene060247:CDS 25.0%
! GGAAGAAATAATAATATCAG+TGG + chr5.4:59987360-59987379 MS.gene060247:CDS 25.0%
! GGAAGAATGAAAAATGATAA+CGG - chr5.4:59985988-59986007 None:intergenic 25.0%
! TATATGGAATCTTTATTGGA+AGG + chr5.4:59987401-59987420 MS.gene060247:CDS 25.0%
! TGAATTCCAAGATGAAAATT+CGG + chr5.4:59986037-59986056 MS.gene060247:CDS 25.0%
! TGTATATGATAAGAAGCTTA+AGG + chr5.4:59987339-59987358 MS.gene060247:CDS 25.0%
! TTTAATTAAAAGGTGGGATT+TGG + chr5.4:59987090-59987109 MS.gene060247:CDS 25.0%
!! CTTTTATACAACAGATGAAA+TGG + chr5.4:59986963-59986982 MS.gene060247:CDS 25.0%
!! TAATTACCGAATTTTCATCT+TGG - chr5.4:59986046-59986065 None:intergenic 25.0%
!! TATAAAGATTAAGGTCTTGT+TGG - chr5.4:59987162-59987181 None:intergenic 25.0%
!! TTTTACTTCGATAAAGTGAA+CGG + chr5.4:59985780-59985799 MS.gene060247:CDS 25.0%
!! TTTTCATGATGAATAATAGG+AGG + chr5.4:59987056-59987075 MS.gene060247:CDS 25.0%
!! TTTTCTTCTGTAGAAGAAAT+TGG + chr5.4:59986008-59986027 MS.gene060247:CDS 25.0%
!!! GATCTTCTTTACTTTTTTCT+CGG + chr5.4:59985894-59985913 MS.gene060247:CDS 25.0%
ACAACAGATGAAATGGATAA+TGG + chr5.4:59986970-59986989 MS.gene060247:CDS 30.0%
ACTACCAAAAAGATAGTTGA+AGG - chr5.4:59985610-59985629 None:intergenic 30.0%
CCAATAAAGATTCCATATAC+TGG - chr5.4:59987400-59987419 None:intergenic 30.0%
CCAGTATATGGAATCTTTAT+TGG + chr5.4:59987397-59987416 MS.gene060247:CDS 30.0%
GAATATCCAAAGGTGAATAA+TGG + chr5.4:59986923-59986942 MS.gene060247:CDS 30.0%
TTGATATCGAAATTCCACTT+GGG + chr5.4:59986680-59986699 MS.gene060247:CDS 30.0%
TTTGATATCGAAATTCCACT+TGG + chr5.4:59986679-59986698 MS.gene060247:CDS 30.0%
! CATTTTGAATAAGCACCAAA+TGG - chr5.4:59986633-59986652 None:intergenic 30.0%
! GGAATTTTGCTTGATTTTTC+TGG - chr5.4:59987141-59987160 None:intergenic 30.0%
! TCTTCCTTCAACTATCTTTT+TGG + chr5.4:59985603-59985622 MS.gene060247:CDS 30.0%
!! AAACCATATTTGGTAACGAT+TGG + chr5.4:59987113-59987132 MS.gene060247:CDS 30.0%
!! TCAACTATCTTTTTGGTAGT+TGG + chr5.4:59985610-59985629 MS.gene060247:CDS 30.0%
AACTCATCGATCATGATGTT+AGG - chr5.4:59986230-59986249 None:intergenic 35.0%
ACATCGGGAATGAAAATCAA+AGG + chr5.4:59986402-59986421 MS.gene060247:CDS 35.0%
ACTACTCCATTATTCACCTT+TGG - chr5.4:59986932-59986951 None:intergenic 35.0%
ACTCATCGATCATGATGTTA+GGG - chr5.4:59986229-59986248 None:intergenic 35.0%
ATGTATACATCCATTGCAGA+AGG + chr5.4:59986327-59986346 MS.gene060247:CDS 35.0%
CAGTTATTCATTATTGGAGC+AGG + chr5.4:59985951-59985970 MS.gene060247:CDS 35.0%
CATCGGGAATGAAAATCAAA+GGG + chr5.4:59986403-59986422 MS.gene060247:CDS 35.0%
CATGAATACCAAGACAATCA+CGG - chr5.4:59987429-59987448 None:intergenic 35.0%
CGATCAGAAACAAATTGTTG+AGG - chr5.4:59987495-59987514 None:intergenic 35.0%
GAACCAATCGTTACCAAATA+TGG - chr5.4:59987119-59987138 None:intergenic 35.0%
GAAGTAAAACGAATAGACAG+AGG - chr5.4:59985769-59985788 None:intergenic 35.0%
GATTGCAGAAGATTAACATC+GGG + chr5.4:59986387-59986406 MS.gene060247:CDS 35.0%
GGATTGCAGAAGATTAACAT+CGG + chr5.4:59986386-59986405 MS.gene060247:CDS 35.0%
GTTACAGTCCAAAACAGATT+AGG + chr5.4:59986731-59986750 MS.gene060247:CDS 35.0%
TGAATAAGCACCAAATGGAA+GGG - chr5.4:59986628-59986647 None:intergenic 35.0%
TGGGATTTGGAAACCATATT+TGG + chr5.4:59987103-59987122 MS.gene060247:CDS 35.0%
TTGAATAAGCACCAAATGGA+AGG - chr5.4:59986629-59986648 None:intergenic 35.0%
! AGTTTTGCAGGAATATCCAA+AGG + chr5.4:59986913-59986932 MS.gene060247:CDS 35.0%
! TTGCTTCTCCTAATCTGTTT+TGG - chr5.4:59986742-59986761 None:intergenic 35.0%
!!! GGTGTTTGAGTTTTTGAAGT+TGG + chr5.4:59987201-59987220 MS.gene060247:CDS 35.0%
AATACCTTGCTGCCAGTATA+TGG + chr5.4:59987385-59987404 MS.gene060247:CDS 40.0%
ACAGATTAGGAGAAGCAATC+AGG + chr5.4:59986744-59986763 MS.gene060247:CDS 40.0%
ACTCAGTGACATGATAGCAA+AGG - chr5.4:59985841-59985860 None:intergenic 40.0%
CAGATTAGGAGAAGCAATCA+GGG + chr5.4:59986745-59986764 MS.gene060247:CDS 40.0%
CCAAACATTTCCTTCTGCAA+TGG - chr5.4:59986340-59986359 None:intergenic 40.0%
CCATTGCAGAAGGAAATGTT+TGG + chr5.4:59986337-59986356 MS.gene060247:CDS 40.0%
GAAATGAGGCTATATGCATC+TGG - chr5.4:59985810-59985829 None:intergenic 40.0%
GGAAAGAGTCTAGAAGTCTT+CGG + chr5.4:59985706-59985725 MS.gene060247:CDS 40.0%
TCACAGAGTCGTTGTTCAAA+TGG - chr5.4:59986497-59986516 None:intergenic 40.0%
TCTGATGCCACATCATCATT+GGG - chr5.4:59987247-59987266 None:intergenic 40.0%
TGAAAAGATTGCGCAAAGCA+AGG - chr5.4:59987042-59987061 None:intergenic 40.0%
TGTACAGAGTTCAGTCGAAT+TGG + chr5.4:59987314-59987333 MS.gene060247:CDS 40.0%
TGTTCCTCAGAATTCAGACA+TGG + chr5.4:59985505-59985524 MS.gene060247:CDS 40.0%
TTGCAGAAGGAAATGTTTGG+AGG + chr5.4:59986340-59986359 MS.gene060247:CDS 40.0%
! ACGAAGGTATGGAGATTTGT+CGG + chr5.4:59985537-59985556 MS.gene060247:CDS 40.0%
! CTCTGTGATCATGTCTTTTC+AGG + chr5.4:59986509-59986528 MS.gene060247:CDS 40.0%
! TGAAGGGAGTTGATCAAATC+TGG - chr5.4:59986257-59986276 None:intergenic 40.0%
! TGTTTCACAGAGGTTTTCCA+CGG + chr5.4:59986554-59986573 MS.gene060247:CDS 40.0%
AAACAACGAGTAGCAGAGGA+GGG - chr5.4:59986539-59986558 None:intergenic 45.0%
AAGAAAGTTGCTCGGTCTGA+TGG + chr5.4:59986815-59986834 MS.gene060247:CDS 45.0%
AAGCGACGTAGCTAATGATC+TGG - chr5.4:59986862-59986881 None:intergenic 45.0%
AGCAAGGTCTCTGTACTCTT+TGG - chr5.4:59987026-59987045 None:intergenic 45.0%
AGCACTTACCATGAACTTCG+CGG - chr5.4:59986285-59986304 None:intergenic 45.0%
AGTTTGTCGAGGCAAACTCA+GGG + chr5.4:59985858-59985877 MS.gene060247:CDS 45.0%
CAAAGGCAGCACAAGAAATG+AGG - chr5.4:59985824-59985843 None:intergenic 45.0%
CAGCAGCAAAGAAAGTTGCT+CGG + chr5.4:59986807-59986826 MS.gene060247:CDS 45.0%
CGAAGTTCATGGTAAGTGCT+GGG + chr5.4:59986285-59986304 MS.gene060247:CDS 45.0%
CTAATGATCTGGACCACCAT+TGG - chr5.4:59986851-59986870 None:intergenic 45.0%
CTCTGATGCCACATCATCAT+TGG - chr5.4:59987248-59987267 None:intergenic 45.0%
GAACTTCGCGGTTTCATGAA+GGG - chr5.4:59986273-59986292 None:intergenic 45.0%
GAGCAACTTTCTTTGCTGCT+GGG - chr5.4:59986808-59986827 None:intergenic 45.0%
GATTCCATATACTGGCAGCA+AGG - chr5.4:59987392-59987411 None:intergenic 45.0%
GTTGGACAACAGTGACTATC+TGG + chr5.4:59987219-59987238 MS.gene060247:CDS 45.0%
TCAGCCATGTCTGAATTCTG+AGG - chr5.4:59985512-59985531 None:intergenic 45.0%
TCATGAAACCGCGAAGTTCA+TGG + chr5.4:59986274-59986293 MS.gene060247:CDS 45.0%
TCATGTCACTGAGTTTGTCG+AGG + chr5.4:59985847-59985866 MS.gene060247:CDS 45.0%
TGAACTTCGCGGTTTCATGA+AGG - chr5.4:59986274-59986293 None:intergenic 45.0%
TGATGGTCGACATCATCCAA+TGG + chr5.4:59986832-59986851 MS.gene060247:CDS 45.0%
TGTGAAACAACGAGTAGCAG+AGG - chr5.4:59986543-59986562 None:intergenic 45.0%
! AGGGAGTTGATCAAATCTGG+AGG - chr5.4:59986254-59986273 None:intergenic 45.0%
! CACGCTAGAACAAGTTTTGC+AGG + chr5.4:59986901-59986920 MS.gene060247:CDS 45.0%
! GACTCTGATTTGATGTTGCC+TGG + chr5.4:59986203-59986222 MS.gene060247:CDS 45.0%
! GCAAAACTTGTTCTAGCGTG+CGG - chr5.4:59986901-59986920 None:intergenic 45.0%
! TGCTACTCGTTGTTTCACAG+AGG + chr5.4:59986544-59986563 MS.gene060247:CDS 45.0%
!!! ATTTTTTTTTATAAAGATTA+AGG - chr5.4:59987171-59987190 None:intergenic 5.0%
AACAACGAGTAGCAGAGGAG+GGG - chr5.4:59986538-59986557 None:intergenic 50.0%
CGAGCAACTTTCTTTGCTGC+TGG - chr5.4:59986809-59986828 None:intergenic 50.0%
CTGATGGAAGCCCTTCCATT+TGG + chr5.4:59986615-59986634 MS.gene060247:CDS 50.0%
CTTTCTTTGCTGCTGGGACT+CGG - chr5.4:59986802-59986821 None:intergenic 50.0%
GAAACAACGAGTAGCAGAGG+AGG - chr5.4:59986540-59986559 None:intergenic 50.0%
GAGTTTGTCGAGGCAAACTC+AGG + chr5.4:59985857-59985876 MS.gene060247:CDS 50.0%
GCGAAGTTCATGGTAAGTGC+TGG + chr5.4:59986284-59986303 MS.gene060247:CDS 50.0%
GGAAGGTTCCGTGATTGTCT+TGG + chr5.4:59987418-59987437 MS.gene060247:CDS 50.0%
TCGATCATGATGTTAGGGCC+AGG - chr5.4:59986224-59986243 None:intergenic 50.0%
TGGTCGACATCATCCAATGG+TGG + chr5.4:59986835-59986854 MS.gene060247:CDS 50.0%
TTCGCTGATGCAGTTGCTGA+TGG + chr5.4:59986599-59986618 MS.gene060247:CDS 50.0%
! AACTCAGGGTGGATTCGAAG+TGG + chr5.4:59985872-59985891 MS.gene060247:CDS 50.0%
! GGATTTGCTTCAGCTGCTGT+TGG + chr5.4:59985558-59985577 MS.gene060247:CDS 50.0%
! TCTGGCACCCAATGATGATG+TGG + chr5.4:59987237-59987256 MS.gene060247:CDS 50.0%
!! CCACTTGGGTGCTGATTCTT+CGG + chr5.4:59986694-59986713 MS.gene060247:CDS 50.0%
CCGAAGAATCAGCACCCAAG+TGG - chr5.4:59986697-59986716 None:intergenic 55.0%
GAAGCTGAAACGTTGCTCCG+TGG - chr5.4:59986574-59986593 None:intergenic 55.0%
GACATGGCTGATGCAGACGA+AGG + chr5.4:59985521-59985540 MS.gene060247:CDS 55.0%
GCTACGTCGCTTCTGCATGT+AGG + chr5.4:59986870-59986889 MS.gene060247:CDS 55.0%
GGCTGATGCAGACGAAGGTA+TGG + chr5.4:59985526-59985545 MS.gene060247:CDS 55.0%
TGCTTCAGCTGCTGTTGGAC+TGG + chr5.4:59985563-59985582 MS.gene060247:CDS 55.0%
TTGTCGAGGCAAACTCAGGG+TGG + chr5.4:59985861-59985880 MS.gene060247:CDS 55.0%
!! CATGGTAAGTGCTGGGTTCG+AGG + chr5.4:59986292-59986311 MS.gene060247:CDS 55.0%
!! GGGTGCTGATTCTTCGGTGA+AGG + chr5.4:59986700-59986719 MS.gene060247:CDS 55.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 59985492 59987525 59985492 ID=MS.gene060247
chr5.4 mRNA 59985492 59987525 59985492 ID=MS.gene060247.t1;Parent=MS.gene060247
chr5.4 exon 59985492 59987525 59985492 ID=MS.gene060247.t1.exon1;Parent=MS.gene060247.t1
chr5.4 CDS 59985492 59987525 59985492 ID=cds.MS.gene060247.t1;Parent=MS.gene060247.t1
Gene Sequence

>MS.gene060247

ATGACAGTGGACATGTTCCTCAGAATTCAGACATGGCTGATGCAGACGAAGGTATGGAGATTTGTCGGATTTGCTTCAGCTGCTGTTGGACTGGTTTGTTATACTCTAAGCTCTTCCTTCAACTATCTTTTTGGTAGTTGGAATTTGTTGAAGATAATTCTTTACACTGTTTTCAGTTTCATCATTTGCATCATGATTTTGTATGAAAATATATGGAAAGAGTCTAGAAGTCTTCGGTTCAAAGCTCATACAGCTTTTTTAGTATTGACAATCACCTCTGTCTATTCGTTTTACTTCGATAAAGTGAACGGAAAACCAGATGCATATAGCCTCATTTCTTGTGCTGCCTTTGCTATCATGTCACTGAGTTTGTCGAGGCAAACTCAGGGTGGATTCGAAGTGGATCTTCTTTACTTTTTTCTCGGATGTCTAACTATGTTACTCATGAAGATTAAGTTGCAGTTATTCATTATTGGAGCAGGTTTGAGTTACTCCGTTATCATTTTTCATTCTTCCTTTTCTTCTGTAGAAGAAATTGGATTCTTTGAATTCCAAGATGAAAATTCGGTAATTATTGATGTAGATTCGCAACAACTAGCTAATACTGATATTGCTAGTACGATTGAACAACTAAAAAATTATCTTAACATGCTTCAGCAGAAAAATTTGAACATCGTCGACATGCTTTTGAAGCATGTGAATGAATATGATGACTCTGATTTGATGTTGCCTGGCCCTAACATCATGATCGATGAGTTGCCTCCAGATTTGATCAACTCCCTTCATGAAACCGCGAAGTTCATGGTAAGTGCTGGGTTCGAGGAAGAGTTTTCTAATGTATACATCCATTGCAGAAGGAAATGTTTGGAGGAGTGTCTAATCAATAGATTATTCGGATTGCAGAAGATTAACATCGGGAATGAAAATCAAAGGGCGAGATATGTAGATATTGTGATTAAAAAATGGATCACAGCATCAGAAATCGCTCTTAAGATTCTATTTCCATTTGAACAACGACTCTGTGATCATGTCTTTTCAGGTTTCCCCTCCTCTGCTACTCGTTGTTTCACAGAGGTTTTCCACGGAGCAACGTTTCAGCTTCTGAATTTCGCTGATGCAGTTGCTGATGGAAGCCCTTCCATTTGGTGCTTATTCAAAATGCTCGCAGTCTTTGAGACATTGCATTATTTGATATCGAAATTCCACTTGGGTGCTGATTCTTCGGTGAAGGAAGCTGCAGTTACAGTCCAAAACAGATTAGGAGAAGCAATCAGGGACCTATTCTTGAAACTAAATTATCTGACTTTCCGAGTCCCAGCAGCAAAGAAAGTTGCTCGGTCTGATGGTCGACATCATCCAATGGTGGTCCAGATCATTAGCTACGTCGCTTCTGCATGTAGGTCACGCCGCACGCTAGAACAAGTTTTGCAGGAATATCCAAAGGTGAATAATGGAGTAGTACTGAAAGAATCTTTTATACAACAGATGAAATGGATAATGGATATGTTAGAGAAAAGATTGAACTGTAAATCCAAAGAGTACAGAGACCTTGCTTTGCGCAATCTTTTCATGATGAATAATAGGAGGCACATAGAAGATTTAATTAAAAGGTGGGATTTGGAAACCATATTTGGTAACGATTGGTTCCAGAAAAATCAAGCAAAATTCCAACAAGACCTTAATCTTTATAAAAAAAAATCGTGGAATATGGTGTTTGAGTTTTTGAAGTTGGACAACAGTGACTATCTGGCACCCAATGATGATGTGGCATCAGAGTTTATGAAAGATAAGCTAAAATTGTTCAACAAGCACTTTGAAGAGATGTACAGAGTTCAGTCGAATTGGTTTGTATATGATAAGAAGCTTAAGGAAGAAATAATAATATCAGTGGCAAATACCTTGCTGCCAGTATATGGAATCTTTATTGGAAGGTTCCGTGATTGTCTTGGTATTCATGCTAATCAGTATATTAGATATGGAATGTTTGAGATTCAAGATCGCCTCAACAATTTGTTTCTGATCGAAAGCAGTTAG

Protein sequence

>MS.gene060247.t1

MTVDMFLRIQTWLMQTKVWRFVGFASAAVGLVCYTLSSSFNYLFGSWNLLKIILYTVFSFIICIMILYENIWKESRSLRFKAHTAFLVLTITSVYSFYFDKVNGKPDAYSLISCAAFAIMSLSLSRQTQGGFEVDLLYFFLGCLTMLLMKIKLQLFIIGAGLSYSVIIFHSSFSSVEEIGFFEFQDENSVIIDVDSQQLANTDIASTIEQLKNYLNMLQQKNLNIVDMLLKHVNEYDDSDLMLPGPNIMIDELPPDLINSLHETAKFMVSAGFEEEFSNVYIHCRRKCLEECLINRLFGLQKINIGNENQRARYVDIVIKKWITASEIALKILFPFEQRLCDHVFSGFPSSATRCFTEVFHGATFQLLNFADAVADGSPSIWCLFKMLAVFETLHYLISKFHLGADSSVKEAAVTVQNRLGEAIRDLFLKLNYLTFRVPAAKKVARSDGRHHPMVVQIISYVASACRSRRTLEQVLQEYPKVNNGVVLKESFIQQMKWIMDMLEKRLNCKSKEYRDLALRNLFMMNNRRHIEDLIKRWDLETIFGNDWFQKNQAKFQQDLNLYKKKSWNMVFEFLKLDNSDYLAPNDDVASEFMKDKLKLFNKHFEEMYRVQSNWFVYDKKLKEEIIISVANTLLPVYGIFIGRFRDCLGIHANQYIRYGMFEIQDRLNNLFLIESS