Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49559.t1 | XP_003613608.1 | 87.6 | 751 | 59 | 2 | 1 | 751 | 1 | 717 | 2.80E-176 | 629 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49559.t1 | Q8L4D8 | 37.3 | 260 | 135 | 7 | 40 | 280 | 33 | 283 | 5.8e-13 | 77.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49559.t1 | G7KB25 | 87.6 | 751 | 59 | 2 | 1 | 751 | 1 | 717 | 2.0e-176 | 629.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049821 | MS.gene49559 | 0.811878 | 5.62E-51 | -1.69E-46 |
| MS.gene050807 | MS.gene49559 | 0.813547 | 2.42E-51 | -1.69E-46 |
| MS.gene050808 | MS.gene49559 | 0.802976 | 4.34E-49 | -1.69E-46 |
| MS.gene051328 | MS.gene49559 | 0.808703 | 2.72E-50 | -1.69E-46 |
| MS.gene051719 | MS.gene49559 | 0.829635 | 4.61E-55 | -1.69E-46 |
| MS.gene051720 | MS.gene49559 | 0.848103 | 7.59E-60 | -1.69E-46 |
| MS.gene052133 | MS.gene49559 | 0.820939 | 5.26E-53 | -1.69E-46 |
| MS.gene052516 | MS.gene49559 | 0.825768 | 3.91E-54 | -1.69E-46 |
| MS.gene052732 | MS.gene49559 | 0.805237 | 1.47E-49 | -1.69E-46 |
| MS.gene053122 | MS.gene49559 | 0.800343 | 1.51E-48 | -1.69E-46 |
| MS.gene053144 | MS.gene49559 | 0.841429 | 4.78E-58 | -1.69E-46 |
| MS.gene053581 | MS.gene49559 | 0.869677 | 2.59E-66 | -1.69E-46 |
| MS.gene054584 | MS.gene49559 | 0.828552 | 8.44E-55 | -1.69E-46 |
| MS.gene055465 | MS.gene49559 | 0.843473 | 1.37E-58 | -1.69E-46 |
| MS.gene055466 | MS.gene49559 | 0.854934 | 8.84E-62 | -1.69E-46 |
| MS.gene055467 | MS.gene49559 | 0.800815 | 1.21E-48 | -1.69E-46 |
| MS.gene055468 | MS.gene49559 | 0.854694 | 1.04E-61 | -1.69E-46 |
| MS.gene055469 | MS.gene49559 | 0.815447 | 9.20E-52 | -1.69E-46 |
| MS.gene055537 | MS.gene49559 | 0.807077 | 6.03E-50 | -1.69E-46 |
| MS.gene055580 | MS.gene49559 | -0.845686 | 3.48E-59 | -1.69E-46 |
| MS.gene055890 | MS.gene49559 | 0.801696 | 7.97E-49 | -1.69E-46 |
| MS.gene055891 | MS.gene49559 | 0.82211 | 2.82E-53 | -1.69E-46 |
| MS.gene056043 | MS.gene49559 | -0.829605 | 4.69E-55 | -1.69E-46 |
| MS.gene056308 | MS.gene49559 | 0.808213 | 3.46E-50 | -1.69E-46 |
| MS.gene057294 | MS.gene49559 | 0.804518 | 2.08E-49 | -1.69E-46 |
| MS.gene057705 | MS.gene49559 | 0.802342 | 5.87E-49 | -1.69E-46 |
| MS.gene058339 | MS.gene49559 | 0.806503 | 7.97E-50 | -1.69E-46 |
| MS.gene058852 | MS.gene49559 | 0.801711 | 7.92E-49 | -1.69E-46 |
| MS.gene060429 | MS.gene49559 | 0.814263 | 1.68E-51 | -1.69E-46 |
| MS.gene060587 | MS.gene49559 | 0.83028 | 3.21E-55 | -1.69E-46 |
| MS.gene060886 | MS.gene49559 | 0.800213 | 1.60E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49559.t1 | MTR_5g038620 | 87.517 | 753 | 56 | 4 | 1 | 751 | 1 | 717 | 0.0 | 1200 |
| MS.gene49559.t1 | MTR_4g108140 | 32.505 | 523 | 285 | 19 | 4 | 497 | 2 | 485 | 2.36e-47 | 177 |
| MS.gene49559.t1 | MTR_4g108140 | 50.962 | 104 | 49 | 1 | 648 | 751 | 474 | 575 | 1.05e-18 | 90.9 |
| MS.gene49559.t1 | MTR_4g108140 | 32.505 | 523 | 286 | 18 | 4 | 497 | 2 | 486 | 3.88e-47 | 177 |
| MS.gene49559.t1 | MTR_4g108140 | 50.962 | 104 | 49 | 1 | 648 | 751 | 475 | 576 | 1.08e-18 | 90.9 |
| MS.gene49559.t1 | MTR_1g023760 | 38.060 | 134 | 82 | 1 | 121 | 253 | 126 | 259 | 2.69e-17 | 87.0 |
| MS.gene49559.t1 | MTR_0019s0070 | 32.680 | 153 | 74 | 4 | 120 | 260 | 118 | 253 | 5.20e-14 | 75.5 |
| MS.gene49559.t1 | MTR_1g101330 | 33.103 | 145 | 81 | 4 | 116 | 253 | 110 | 245 | 6.42e-13 | 72.0 |
| MS.gene49559.t1 | MTR_8g102400 | 42.857 | 63 | 36 | 0 | 121 | 183 | 114 | 176 | 2.57e-11 | 67.0 |
| MS.gene49559.t1 | MTR_1g103070 | 44.118 | 68 | 38 | 0 | 121 | 188 | 138 | 205 | 3.26e-11 | 66.6 |
| MS.gene49559.t1 | MTR_8g024540 | 43.056 | 72 | 32 | 1 | 113 | 175 | 112 | 183 | 7.64e-11 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene49559.t1 | AT1G14380 | 31.702 | 429 | 225 | 11 | 4 | 405 | 2 | 389 | 1.44e-41 | 161 |
| MS.gene49559.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 489 | 594 | 8.58e-18 | 88.2 |
| MS.gene49559.t1 | AT1G14380 | 31.702 | 429 | 225 | 11 | 4 | 405 | 2 | 389 | 1.44e-41 | 161 |
| MS.gene49559.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 489 | 594 | 8.58e-18 | 88.2 |
| MS.gene49559.t1 | AT1G14380 | 31.702 | 429 | 225 | 11 | 4 | 405 | 2 | 389 | 1.44e-41 | 161 |
| MS.gene49559.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 489 | 594 | 8.58e-18 | 88.2 |
| MS.gene49559.t1 | AT1G14380 | 33.618 | 351 | 185 | 9 | 4 | 344 | 2 | 314 | 4.60e-41 | 160 |
| MS.gene49559.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 551 | 656 | 6.98e-18 | 88.6 |
| MS.gene49559.t1 | AT1G14380 | 33.618 | 351 | 185 | 9 | 4 | 344 | 2 | 314 | 4.60e-41 | 160 |
| MS.gene49559.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 551 | 656 | 6.98e-18 | 88.6 |
| MS.gene49559.t1 | AT1G14380 | 33.618 | 351 | 185 | 9 | 4 | 344 | 2 | 314 | 4.60e-41 | 160 |
| MS.gene49559.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 551 | 656 | 6.98e-18 | 88.6 |
| MS.gene49559.t1 | AT1G14380 | 33.618 | 351 | 185 | 9 | 4 | 344 | 2 | 314 | 7.42e-41 | 158 |
| MS.gene49559.t1 | AT1G14380 | 48.148 | 108 | 51 | 3 | 647 | 751 | 461 | 566 | 9.98e-18 | 87.8 |
| MS.gene49559.t1 | AT1G18840 | 40.086 | 232 | 112 | 6 | 121 | 329 | 111 | 338 | 1.82e-39 | 154 |
| MS.gene49559.t1 | AT1G18840 | 40.086 | 232 | 112 | 6 | 121 | 329 | 111 | 338 | 1.82e-39 | 154 |
| MS.gene49559.t1 | AT1G18840 | 40.086 | 232 | 112 | 6 | 121 | 329 | 111 | 338 | 1.82e-39 | 154 |
| MS.gene49559.t1 | AT1G74690 | 34.085 | 355 | 196 | 11 | 1 | 336 | 1 | 336 | 1.27e-37 | 149 |
| MS.gene49559.t1 | AT2G02790 | 34.048 | 373 | 189 | 9 | 1 | 356 | 1 | 333 | 2.90e-37 | 148 |
| MS.gene49559.t1 | AT2G02790 | 51.485 | 101 | 48 | 1 | 648 | 747 | 485 | 585 | 2.23e-21 | 99.4 |
| MS.gene49559.t1 | AT2G02790 | 34.048 | 373 | 189 | 9 | 1 | 356 | 1 | 333 | 2.90e-37 | 148 |
| MS.gene49559.t1 | AT2G02790 | 51.485 | 101 | 48 | 1 | 648 | 747 | 485 | 585 | 2.23e-21 | 99.4 |
| MS.gene49559.t1 | AT2G02790 | 34.048 | 373 | 189 | 9 | 1 | 356 | 1 | 333 | 8.82e-37 | 147 |
| MS.gene49559.t1 | AT2G02790 | 50.467 | 107 | 52 | 1 | 648 | 753 | 485 | 591 | 6.68e-22 | 101 |
| MS.gene49559.t1 | AT1G19870 | 36.232 | 138 | 77 | 3 | 117 | 253 | 29 | 156 | 3.70e-18 | 89.4 |
| MS.gene49559.t1 | AT1G19870 | 36.232 | 138 | 77 | 3 | 117 | 253 | 212 | 339 | 4.38e-18 | 89.7 |
| MS.gene49559.t1 | AT4G14750 | 30.526 | 190 | 104 | 6 | 1 | 183 | 1 | 169 | 3.83e-13 | 72.4 |
| MS.gene49559.t1 | AT4G14750 | 30.526 | 190 | 104 | 6 | 1 | 183 | 60 | 228 | 9.67e-13 | 71.6 |
| MS.gene49559.t1 | AT4G14750 | 30.526 | 190 | 104 | 6 | 1 | 183 | 60 | 228 | 1.08e-12 | 71.6 |
| MS.gene49559.t1 | AT5G07240 | 49.153 | 59 | 30 | 0 | 121 | 179 | 108 | 166 | 2.37e-11 | 67.0 |
| MS.gene49559.t1 | AT5G07240 | 49.153 | 59 | 30 | 0 | 121 | 179 | 154 | 212 | 3.15e-11 | 66.6 |
| MS.gene49559.t1 | AT3G51380 | 45.455 | 66 | 36 | 0 | 114 | 179 | 32 | 97 | 9.03e-11 | 59.7 |
Find 162 sgRNAs with CRISPR-Local
Find 247 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAAGTTTCTTCTTCAATTT+TGG | 0.131596 | 5.4:-28565179 | None:intergenic |
| GTAACAATGCCGATAGATTT+TGG | 0.176558 | 5.4:-28564324 | None:intergenic |
| TCCAAGACCTTTCTCTTCTT+TGG | 0.182427 | 5.4:-28565867 | None:intergenic |
| CTTTCACGGCAGGTGATTTC+CGG | 0.192974 | 5.4:-28565241 | None:intergenic |
| TCTGAGACCTTTCTCTTCTT+TGG | 0.196588 | 5.4:-28566173 | None:intergenic |
| CTGCCATTCAAGCTCTTCTT+TGG | 0.209892 | 5.4:-28566148 | None:intergenic |
| TCCAAGACTGTTCTCTTCTT+TGG | 0.245150 | 5.4:-28565714 | None:intergenic |
| CCACCATTTGAGCTCTTCTT+TGG | 0.254127 | 5.4:-28565611 | None:intergenic |
| GGCTTATCGTTGTTCTCTTC+TGG | 0.254394 | 5.4:-28565746 | None:intergenic |
| GTTGGACAAGGTCAAGCTTT+TGG | 0.259433 | 5.4:+28565147 | MS.gene49559:CDS |
| AAAGAATCCACAGTTGAAAT+TGG | 0.265796 | 5.4:-28563115 | None:intergenic |
| CCACCATTTAAGCTCTTCTT+TGG | 0.273624 | 5.4:-28565920 | None:intergenic |
| CTGCCATTTAAGCTCTTCTT+TGG | 0.277905 | 5.4:-28565689 | None:intergenic |
| TCCAAGACCTTTCTCTGCTT+TGG | 0.279284 | 5.4:-28566095 | None:intergenic |
| CCGCCACTTACGCTCTTCTT+TGG | 0.286225 | 5.4:-28565842 | None:intergenic |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.290170 | 5.4:-28565995 | None:intergenic |
| CAAATATCCGCACCAATATC+TGG | 0.291168 | 5.4:+28563139 | MS.gene49559:CDS |
| CCGCCATTTAAGCTCTTCTT+TGG | 0.309644 | 5.4:-28565767 | None:intergenic |
| CCGCCACTTAAGCTCTTCTT+TGG | 0.309857 | 5.4:-28566070 | None:intergenic |
| ATGCCAAAGAAGAGCTTAAA+TGG | 0.318366 | 5.4:+28565992 | MS.gene49559:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.320805 | 5.4:+28565686 | MS.gene49559:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.320805 | 5.4:+28565764 | MS.gene49559:CDS |
| AAGCCAAAGAAGAGCTTAAA+TGG | 0.322191 | 5.4:+28565917 | MS.gene49559:CDS |
| GCAACATTAGCTCCAGATAT+TGG | 0.324752 | 5.4:-28563151 | None:intergenic |
| CTGAAAAGGCACAAGTTAAA+AGG | 0.331400 | 5.4:+28565213 | MS.gene49559:CDS |
| GTCTGCTTGCAGAGGCTATC+AGG | 0.334525 | 5.4:+28563336 | MS.gene49559:CDS |
| AATGTTAGACGTTCTGATAC+TGG | 0.344668 | 5.4:+28564036 | MS.gene49559:CDS |
| CAGGCAGTGAAGCTCTTCTT+TGG | 0.344810 | 5.4:-28566330 | None:intergenic |
| GCTGATGAGGGCTCAAGTTC+TGG | 0.345997 | 5.4:+28565263 | MS.gene49559:CDS |
| GCCATATAACTCGGCACTCT+TGG | 0.374824 | 5.4:-28566397 | None:intergenic |
| CCTCTCAAATGGAGAGGAAA+AGG | 0.383865 | 5.4:+28563231 | MS.gene49559:CDS |
| TCCAAGAGTGCCGAGTTATA+TGG | 0.386156 | 5.4:+28566396 | MS.gene49559:CDS |
| AAGGTAGGAGATGAAGAAAT+AGG | 0.392384 | 5.4:+28566259 | MS.gene49559:CDS |
| TGACTCGGTGTCGGCTGAAA+AGG | 0.392618 | 5.4:+28565199 | MS.gene49559:CDS |
| AAAGGATTCAAATCACTCAT+TGG | 0.395796 | 5.4:+28565313 | MS.gene49559:CDS |
| ATGATATCAGTAGCAAATCT+TGG | 0.399401 | 5.4:-28566463 | None:intergenic |
| TGATCTTGGAGAACCTTACT+TGG | 0.410168 | 5.4:+28565106 | MS.gene49559:CDS |
| AACTTCATTGAAGGCTCGTC+AGG | 0.411117 | 5.4:+28563882 | MS.gene49559:intron |
| GTCAAAGAAGAGAAAGATCT+TGG | 0.414222 | 5.4:+28566019 | MS.gene49559:CDS |
| TGAGCCCTCATCAGCTTTCA+CGG | 0.420821 | 5.4:-28565255 | None:intergenic |
| TCTTCACTTAACAGCAAGTC+AGG | 0.421600 | 5.4:+28566523 | MS.gene49559:CDS |
| TGATATCAGTAGCAAATCTT+GGG | 0.424517 | 5.4:-28566462 | None:intergenic |
| GTCAAAGAAGAGAAAGGTCT+TGG | 0.427941 | 5.4:+28565635 | MS.gene49559:CDS |
| GAAAACAGTGATTTCAGAAA+AGG | 0.429652 | 5.4:+28563174 | MS.gene49559:CDS |
| ATAAATCTCTGTCATCTTCA+AGG | 0.431656 | 5.4:+28566608 | MS.gene49559:CDS |
| CTATCGCTAAATAGTGATCT+TGG | 0.432037 | 5.4:+28565092 | MS.gene49559:CDS |
| TTCTGTCCAAGACCTTTCTC+AGG | 0.432297 | 5.4:-28565563 | None:intergenic |
| GTCAAGGAAGAGAAAGATCT+TGG | 0.435270 | 5.4:+28565791 | MS.gene49559:CDS |
| GCCAAAGAAGAGAAAGGTCT+TGG | 0.435662 | 5.4:+28565866 | MS.gene49559:CDS |
| TCTTGCCCTGAGAAAGGTCT+TGG | 0.436010 | 5.4:+28565557 | MS.gene49559:CDS |
| AAGGAAGAAGTCCTGGGAAA+TGG | 0.438773 | 5.4:+28562786 | MS.gene49559:CDS |
| GCCAAAGCAGAGAAAGGTCT+TGG | 0.440912 | 5.4:+28566094 | MS.gene49559:CDS |
| TCACTCATTGGTTTCAGCTC+AGG | 0.453397 | 5.4:+28565325 | MS.gene49559:CDS |
| CTTCGAAGTGGCTTGACCGT+TGG | 0.453863 | 5.4:+28565129 | MS.gene49559:CDS |
| AGAAAAGAAAACACAGCTCT+AGG | 0.454796 | 5.4:+28565438 | MS.gene49559:CDS |
| GATGTTTCAGAGCAGGGGTC+AGG | 0.458195 | 5.4:+28565485 | MS.gene49559:CDS |
| TTCAAAGAAGAGAAAGATGT+TGG | 0.458543 | 5.4:+28565944 | MS.gene49559:CDS |
| GAGAGGGATATCCTCTCAAA+TGG | 0.462294 | 5.4:+28563220 | MS.gene49559:CDS |
| AAGCCAAAGAAGAGCTCAAA+TGG | 0.466804 | 5.4:+28565608 | MS.gene49559:CDS |
| CAGACAGAAAGCACTAGAAC+AGG | 0.470431 | 5.4:+28566192 | MS.gene49559:CDS |
| CTGATAACTTTGAGCGGAAG+AGG | 0.471793 | 5.4:+28566571 | MS.gene49559:CDS |
| TTTCACGGCAGGTGATTTCC+GGG | 0.473542 | 5.4:-28565240 | None:intergenic |
| CTCTGTCATCTTCAAGGGAC+GGG | 0.476009 | 5.4:+28566614 | MS.gene49559:CDS |
| ATCGAGTAACAAGGATGCAC+TGG | 0.476424 | 5.4:+28563066 | MS.gene49559:CDS |
| ATGGGGAAAGGAAGAAGTCC+TGG | 0.479376 | 5.4:+28562779 | MS.gene49559:CDS |
| AGCTCTTATTCGTGGTCACT+TGG | 0.479958 | 5.4:+28563939 | MS.gene49559:CDS |
| AAAGCGCAAGAAGAGAATAA+TGG | 0.480554 | 5.4:+28565893 | MS.gene49559:CDS |
| AAAGCGCAAGAAGAGAATAA+TGG | 0.480554 | 5.4:+28566121 | MS.gene49559:CDS |
| CCCTCATCAGCTTTCACGGC+AGG | 0.480653 | 5.4:-28565251 | None:intergenic |
| AAGCCAAAGAAGAGCTTGAA+TGG | 0.481386 | 5.4:+28566145 | MS.gene49559:CDS |
| TCTTGATCATTAAAATTAGC+AGG | 0.485135 | 5.4:-28566349 | None:intergenic |
| AGATCACTATTTAGCGATAG+AGG | 0.485199 | 5.4:-28565089 | None:intergenic |
| GGGCAAGACTCTTCTGACTT+TGG | 0.487465 | 5.4:-28565542 | None:intergenic |
| AGCCACTTCGAAGCCAAGTA+AGG | 0.490411 | 5.4:-28565119 | None:intergenic |
| GAAGTCCTGGGAAATGGATC+AGG | 0.490967 | 5.4:+28562792 | MS.gene49559:CDS |
| TGTTACTGATGTTTCAGAGC+AGG | 0.504504 | 5.4:+28565478 | MS.gene49559:CDS |
| AATCAGCAAAAGCTAGGCTA+AGG | 0.506190 | 5.4:+28566428 | MS.gene49559:CDS |
| TGGATCAGGAGCTTACTCTC+AGG | 0.507002 | 5.4:+28562806 | MS.gene49559:CDS |
| AAATGGAGAGGAAAAGGGTC+AGG | 0.512791 | 5.4:+28563237 | MS.gene49559:CDS |
| CTTACAGACTAGTGGGAAGA+AGG | 0.521678 | 5.4:+28566240 | MS.gene49559:CDS |
| ACCAAAGAAGAGAACAGTCT+TGG | 0.521726 | 5.4:+28565713 | MS.gene49559:CDS |
| GAAGAGTCTTGCCCTGAGAA+AGG | 0.521918 | 5.4:+28565551 | MS.gene49559:CDS |
| AAGCCAAAGAAGAGCTTAAG+TGG | 0.524060 | 5.4:+28566067 | MS.gene49559:CDS |
| CTCTCAAATGGAGAGGAAAA+GGG | 0.525376 | 5.4:+28563232 | MS.gene49559:CDS |
| TCTTGAGACACTCAGGCTTA+CGG | 0.526578 | 5.4:+28563294 | MS.gene49559:CDS |
| ATGTTAGACGTTCTGATACT+GGG | 0.528849 | 5.4:+28564037 | MS.gene49559:CDS |
| GTTACTGATGTTTCAGAGCA+GGG | 0.534754 | 5.4:+28565479 | MS.gene49559:CDS |
| CAGCTGCAAGCTCTTATTCG+TGG | 0.539642 | 5.4:+28563931 | MS.gene49559:CDS |
| TAACTCGGCACTCTTGGACT+TGG | 0.545077 | 5.4:-28566391 | None:intergenic |
| ATTGTTGACGTGATGGGGAA+AGG | 0.545375 | 5.4:+28562767 | None:intergenic |
| TTCTGCTTTATATTGTGTGA+AGG | 0.546023 | 5.4:+28563978 | MS.gene49559:CDS |
| ACTCAATGTCCAAAATCTAT+CGG | 0.549474 | 5.4:+28564315 | MS.gene49559:CDS |
| GAAAAGAAAACACAGCTCTA+GGG | 0.549824 | 5.4:+28565439 | MS.gene49559:CDS |
| GAGCTTAAATGGCGGTGTCA+AGG | 0.550330 | 5.4:+28565775 | MS.gene49559:CDS |
| AGAAAATGCCTTTGTTCACC+AGG | 0.551079 | 5.4:+28564371 | MS.gene49559:CDS |
| GGCGGTGCCAAAGCAGAGAA+AGG | 0.554921 | 5.4:+28566088 | MS.gene49559:CDS |
| CAGACTAGTGGGAAGAAGGT+AGG | 0.556305 | 5.4:+28566244 | MS.gene49559:CDS |
| CGACTGAATCAGCAAAAGCT+AGG | 0.556769 | 5.4:+28566422 | MS.gene49559:CDS |
| AATTGTTAAAGTGCAAGCAT+TGG | 0.557493 | 5.4:+28564002 | MS.gene49559:CDS |
| TCATCTTCAAGGGACGGGAC+TGG | 0.557763 | 5.4:+28566619 | MS.gene49559:CDS |
| ACGTTCTGATACTGGGCTTG+AGG | 0.558336 | 5.4:+28564044 | MS.gene49559:CDS |
| AAGCCAAAGAAGAGCGTAAG+TGG | 0.558887 | 5.4:+28565839 | MS.gene49559:CDS |
| TAATAAGTCATCACATGAGA+GGG | 0.560618 | 5.4:+28563204 | MS.gene49559:CDS |
| GATGCAGCATTAGCAAAGGC+TGG | 0.560730 | 5.4:-28563262 | None:intergenic |
| GTCTAATCCAATTTCAACTG+TGG | 0.561495 | 5.4:+28563108 | MS.gene49559:CDS |
| TCTGCTTTATATTGTGTGAA+GGG | 0.562073 | 5.4:+28563979 | MS.gene49559:CDS |
| ACCTGCCGTGAAAGCTGATG+AGG | 0.565649 | 5.4:+28565250 | MS.gene49559:CDS |
| GGTGGTGTCAAAGAAGAGAA+AGG | 0.565727 | 5.4:+28565629 | MS.gene49559:CDS |
| GGAGTTAGCGAAGACTTGAA+TGG | 0.567098 | 5.4:+28566280 | MS.gene49559:CDS |
| ATCAGCAAAAGCTAGGCTAA+GGG | 0.567639 | 5.4:+28566429 | MS.gene49559:CDS |
| AAAGCTAGGCTAAGGGGACA+AGG | 0.569700 | 5.4:+28566436 | MS.gene49559:CDS |
| TAAATCTCTGTCATCTTCAA+GGG | 0.577185 | 5.4:+28566609 | MS.gene49559:CDS |
| GGCAGTGCCAAAGAAGAGAA+AGG | 0.578082 | 5.4:+28566166 | MS.gene49559:CDS |
| AAGATGATCTTGAGACACTC+AGG | 0.580261 | 5.4:+28563287 | MS.gene49559:CDS |
| GGATCAGGAGCTTACTCTCA+GGG | 0.586360 | 5.4:+28562807 | MS.gene49559:CDS |
| GAAGAAACTTGACTCGGTGT+CGG | 0.588481 | 5.4:+28565190 | MS.gene49559:CDS |
| CTAGTCTGTAAGACAGCAGT+AGG | 0.589149 | 5.4:-28566229 | None:intergenic |
| TCTGTCCAAGACCTTTCTCA+GGG | 0.589944 | 5.4:-28565562 | None:intergenic |
| AAGCTCCTGATCCATTTCCC+AGG | 0.592908 | 5.4:-28562797 | None:intergenic |
| CCTGCCGTGAAAGCTGATGA+GGG | 0.596782 | 5.4:+28565251 | MS.gene49559:CDS |
| AACCTTACTTGGCTTCGAAG+TGG | 0.602005 | 5.4:+28565117 | MS.gene49559:CDS |
| CTGCTGTCTTACAGACTAGT+GGG | 0.602421 | 5.4:+28566233 | MS.gene49559:CDS |
| CACAAGTTAAAAGGACTACC+CGG | 0.602610 | 5.4:+28565222 | MS.gene49559:CDS |
| GGCGGTGCCAAAGAAGAGAA+AGG | 0.603794 | 5.4:+28565860 | MS.gene49559:CDS |
| AGATGAAAGTGAATGCCTCC+TGG | 0.603995 | 5.4:-28566503 | None:intergenic |
| TTAATAAGTCATCACATGAG+AGG | 0.605684 | 5.4:+28563203 | MS.gene49559:CDS |
| AAACTTCAGTCTGCTTGCAG+AGG | 0.606146 | 5.4:+28563328 | MS.gene49559:CDS |
| TCTCTGTCATCTTCAAGGGA+CGG | 0.611971 | 5.4:+28566613 | MS.gene49559:CDS |
| AAAAGCTTGACCTTGTCCAA+CGG | 0.615531 | 5.4:-28565145 | None:intergenic |
| AGTGGCTTGACCGTTGGACA+AGG | 0.615551 | 5.4:+28565135 | MS.gene49559:CDS |
| ACTGCTGTCTTACAGACTAG+TGG | 0.618141 | 5.4:+28566232 | MS.gene49559:CDS |
| TCGAGTAACAAGGATGCACT+GGG | 0.620971 | 5.4:+28563067 | MS.gene49559:CDS |
| TTACTGATGTTTCAGAGCAG+GGG | 0.624869 | 5.4:+28565480 | MS.gene49559:CDS |
| TTGAGATGCAGCATTAGCAA+AGG | 0.627247 | 5.4:-28563266 | None:intergenic |
| TGAGGTCCTGAAAGTTCGCA+AGG | 0.629107 | 5.4:+28564062 | MS.gene49559:CDS |
| TTAGCGATAGAGGAAACGCA+TGG | 0.630241 | 5.4:-28565079 | None:intergenic |
| ATCAGGAGCTTACTCTCAGG+GGG | 0.630920 | 5.4:+28562809 | MS.gene49559:CDS |
| TGAGCGGAAGAGGAGTTGCA+AGG | 0.636898 | 5.4:+28566581 | MS.gene49559:CDS |
| GGATATCCTCTCAAATGGAG+AGG | 0.637059 | 5.4:+28563225 | MS.gene49559:CDS |
| AAAGTGCAAGCATTGGCTCG+TGG | 0.637631 | 5.4:+28564009 | MS.gene49559:CDS |
| TCAGCAAAAGCTAGGCTAAG+GGG | 0.647323 | 5.4:+28566430 | MS.gene49559:CDS |
| AGTTCCTACCTGGTGAACAA+AGG | 0.648285 | 5.4:-28564379 | None:intergenic |
| GAAAAGCTGATAACTTTGAG+CGG | 0.650199 | 5.4:+28566565 | MS.gene49559:CDS |
| TGGGGAAAGGAAGAAGTCCT+GGG | 0.653494 | 5.4:+28562780 | MS.gene49559:CDS |
| CGGCATTGTTACATCTACAC+CGG | 0.653591 | 5.4:+28564335 | MS.gene49559:CDS |
| CCAAAGAAGAGCTTAAATGG+TGG | 0.659702 | 5.4:+28565920 | MS.gene49559:CDS |
| GTAGAAATCATCGAGTAACA+AGG | 0.661255 | 5.4:+28563057 | MS.gene49559:intron |
| TCAGTCGGAGCCATATAACT+CGG | 0.661998 | 5.4:-28566406 | None:intergenic |
| CCAAAGAAGAGCTCAAATGG+TGG | 0.663791 | 5.4:+28565611 | MS.gene49559:CDS |
| GATATCAGTAGCAAATCTTG+GGG | 0.666334 | 5.4:-28566461 | None:intergenic |
| CAGAAAGCACTAGAACAGGA+AGG | 0.674738 | 5.4:+28566196 | MS.gene49559:CDS |
| TAGCGATAGAGGAAACGCAT+GGG | 0.677774 | 5.4:-28565078 | None:intergenic |
| TGAGAAAATGAAAGAAACGA+CGG | 0.688170 | 5.4:+28565517 | MS.gene49559:CDS |
| ATTGAAGAAGAAACTTGACT+CGG | 0.691260 | 5.4:+28565184 | MS.gene49559:CDS |
| CCAAAGAAGAGCGTAAGTGG+CGG | 0.702919 | 5.4:+28565842 | MS.gene49559:CDS |
| GATCAGGAGCTTACTCTCAG+GGG | 0.703576 | 5.4:+28562808 | MS.gene49559:CDS |
| CCAAAGAAGAGCTTAAGTGG+CGG | 0.710668 | 5.4:+28566070 | MS.gene49559:CDS |
| GTTAGCGAAGACTTGAATGG+CGG | 0.720405 | 5.4:+28566283 | MS.gene49559:CDS |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.723218 | 5.4:+28565995 | MS.gene49559:CDS |
| ATTAGCTCCAGATATTGGTG+CGG | 0.724836 | 5.4:-28563146 | None:intergenic |
| CCAAAGAAGAGCTTAAATGG+CGG | 0.731508 | 5.4:+28565767 | MS.gene49559:CDS |
| TCAGGAGCTTACTCTCAGGG+GGG | 0.780339 | 5.4:+28562810 | MS.gene49559:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AACATAAATGTAAAATTACA+GGG | - | chr5.4:28563370-28563389 | None:intergenic | 15.0% |
| !! | AGTATTAATTGAATTAAAGA+AGG | + | chr5.4:28564585-28564604 | MS.gene49559:intron | 15.0% |
| !! | ATTTAGTGTTATGATATATT+TGG | + | chr5.4:28563750-28563769 | MS.gene49559:intron | 15.0% |
| !! | TAATTATTTGAAAAATGTCA+TGG | + | chr5.4:28563573-28563592 | MS.gene49559:intron | 15.0% |
| !! | TATTTAAACTAAATTTGCAT+AGG | + | chr5.4:28563667-28563686 | MS.gene49559:intron | 15.0% |
| !! | TCATTATTTATCATCTATAT+CGG | - | chr5.4:28564424-28564443 | None:intergenic | 15.0% |
| !!! | AAATAATGATAGATTGTTTT+AGG | + | chr5.4:28564435-28564454 | MS.gene49559:intron | 15.0% |
| !!! | AATTTTATATTCGATATGAA+TGG | + | chr5.4:28564901-28564920 | MS.gene49559:intron | 15.0% |
| !!! | ATGTTATAATTGTTACTTAT+AGG | + | chr5.4:28562975-28562994 | MS.gene49559:intron | 15.0% |
| !!! | TGTTATAATTGTTACTTATA+GGG | + | chr5.4:28562976-28562995 | MS.gene49559:intron | 15.0% |
| !!! | TTTTGTTTATGCAATTTTAT+TGG | + | chr5.4:28563722-28563741 | MS.gene49559:intron | 15.0% |
| !! | AAATAAAAGTGAAATAGATG+TGG | - | chr5.4:28563652-28563671 | None:intergenic | 20.0% |
| !! | ACATAAATGTAAAATTACAG+GGG | - | chr5.4:28563369-28563388 | None:intergenic | 20.0% |
| !! | CAACATAAATGTAAAATTAC+AGG | - | chr5.4:28563371-28563390 | None:intergenic | 20.0% |
| !! | GAAATTATATGAAGAAACTT+CGG | - | chr5.4:28564770-28564789 | None:intergenic | 20.0% |
| !! | TATATAACAAAGACAAATTC+AGG | - | chr5.4:28564648-28564667 | None:intergenic | 20.0% |
| !! | TCTTCATATAATTTCAGTTA+AGG | + | chr5.4:28564775-28564794 | MS.gene49559:intron | 20.0% |
| !! | TGTTATAAGGAAACTATTAA+AGG | + | chr5.4:28562945-28562964 | MS.gene49559:intron | 20.0% |
| !! | TGTTCTTTATGTATGATTAA+TGG | + | chr5.4:28563854-28563873 | MS.gene49559:intron | 20.0% |
| !! | TTAGTCATATTTCAGATATT+AGG | - | chr5.4:28564465-28564484 | None:intergenic | 20.0% |
| !!! | AATTTTACATTTATGTTGTG+CGG | + | chr5.4:28563373-28563392 | MS.gene49559:intron | 20.0% |
| !!! | AGTACTTTGAATTTTGAAAT+AGG | + | chr5.4:28563003-28563022 | MS.gene49559:intron | 20.0% |
| !!! | ATAATTTTATTGTTCATGGA+AGG | + | chr5.4:28564525-28564544 | MS.gene49559:intron | 20.0% |
| !!! | GTTGATAATTTTATTGTTCA+TGG | + | chr5.4:28564521-28564540 | MS.gene49559:intron | 20.0% |
| !!! | GTTTTGAAATTAAATTGTCT+TGG | + | chr5.4:28564991-28565010 | MS.gene49559:intron | 20.0% |
| !!! | TTTTCTCAATTTCTTTCTTT+GGG | - | chr5.4:28565361-28565380 | None:intergenic | 20.0% |
| ! | AACTAAATTTGCATAGGAAA+AGG | + | chr5.4:28563673-28563692 | MS.gene49559:intron | 25.0% |
| ! | ATGAATGGTATAACAAAGTT+TGG | + | chr5.4:28564916-28564935 | MS.gene49559:intron | 25.0% |
| ! | ATGGTTAATAACTTCATTGA+AGG | + | chr5.4:28563873-28563892 | MS.gene49559:intron | 25.0% |
| ! | GAATTTCTTAGTGAAAATGT+TGG | + | chr5.4:28564139-28564158 | MS.gene49559:intron | 25.0% |
| ! | TAATAGTTTCCTTATAACAG+AGG | - | chr5.4:28562944-28562963 | None:intergenic | 25.0% |
| ! | TCTTGATCATTAAAATTAGC+AGG | - | chr5.4:28566352-28566371 | None:intergenic | 25.0% |
| ! | TGTCAACTTAAAATCATAAC+AGG | - | chr5.4:28564853-28564872 | None:intergenic | 25.0% |
| ! | TTAATACTAGTAGTGTTTAC+CGG | - | chr5.4:28564573-28564592 | None:intergenic | 25.0% |
| !! | ATCAACTGATAACATTTTCA+TGG | - | chr5.4:28564507-28564526 | None:intergenic | 25.0% |
| !! | ATTTTACATTTATGTTGTGC+GGG | + | chr5.4:28563374-28563393 | MS.gene49559:intron | 25.0% |
| !! | CTTTTCTCAATTTCTTTCTT+TGG | - | chr5.4:28565362-28565381 | None:intergenic | 25.0% |
| !! | GTATATTCTTTTTGTATGAC+AGG | - | chr5.4:28564196-28564215 | None:intergenic | 25.0% |
| !! | TCAAGTTTCTTCTTCAATTT+TGG | - | chr5.4:28565182-28565201 | None:intergenic | 25.0% |
| !! | TGTTAAGTGAAAAGTTGTTT+TGG | + | chr5.4:28564808-28564827 | MS.gene49559:intron | 25.0% |
| !!! | ATTTTTTTTTTCTTTCCCTC+TGG | + | chr5.4:28564947-28564966 | MS.gene49559:intron | 25.0% |
| !!! | TATTTTTGTAAGTGTTTTCG+TGG | + | chr5.4:28562874-28562893 | MS.gene49559:intron | 25.0% |
| !!! | TCTTAGTATTGGTACTTTAT+TGG | + | chr5.4:28563829-28563848 | MS.gene49559:intron | 25.0% |
| AAAGAATCCACAGTTGAAAT+TGG | - | chr5.4:28563118-28563137 | None:intergenic | 30.0% | |
| AAAGGATTCAAATCACTCAT+TGG | + | chr5.4:28565313-28565332 | MS.gene49559:CDS | 30.0% | |
| AATTGTTAAAGTGCAAGCAT+TGG | + | chr5.4:28564002-28564021 | MS.gene49559:CDS | 30.0% | |
| ACAAAAACAACGTCCAAAAA+AGG | + | chr5.4:28565295-28565314 | MS.gene49559:CDS | 30.0% | |
| ACTCAATGTCCAAAATCTAT+CGG | + | chr5.4:28564315-28564334 | MS.gene49559:CDS | 30.0% | |
| ATAAATCTCTGTCATCTTCA+AGG | + | chr5.4:28566608-28566627 | MS.gene49559:CDS | 30.0% | |
| ATGATATCAGTAGCAAATCT+TGG | - | chr5.4:28566466-28566485 | None:intergenic | 30.0% | |
| ATTAATTAGAAGTTCCTACC+TGG | - | chr5.4:28564392-28564411 | None:intergenic | 30.0% | |
| ATTGAAGAAGAAACTTGACT+CGG | + | chr5.4:28565184-28565203 | MS.gene49559:CDS | 30.0% | |
| CAACTTAAAATCATAACAGG+AGG | - | chr5.4:28564850-28564869 | None:intergenic | 30.0% | |
| CATGCAATTTGTCTTAGTAT+TGG | + | chr5.4:28563818-28563837 | MS.gene49559:intron | 30.0% | |
| GAAAACAGTGATTTCAGAAA+AGG | + | chr5.4:28563174-28563193 | MS.gene49559:CDS | 30.0% | |
| TAAATCTCTGTCATCTTCAA+GGG | + | chr5.4:28566609-28566628 | MS.gene49559:CDS | 30.0% | |
| TAATAAGTCATCACATGAGA+GGG | + | chr5.4:28563204-28563223 | MS.gene49559:CDS | 30.0% | |
| TAATACTAGTAGTGTTTACC+GGG | - | chr5.4:28564572-28564591 | None:intergenic | 30.0% | |
| TAGACAAAAACAGTTTAACC+AGG | + | chr5.4:28566485-28566504 | MS.gene49559:CDS | 30.0% | |
| TAGTTAGTGAAGCAATACAA+GGG | - | chr5.4:28564272-28564291 | None:intergenic | 30.0% | |
| TCTGCTTTATATTGTGTGAA+GGG | + | chr5.4:28563979-28563998 | MS.gene49559:CDS | 30.0% | |
| TGAGAAAATGAAAGAAACGA+CGG | + | chr5.4:28565517-28565536 | MS.gene49559:CDS | 30.0% | |
| TGATATCAGTAGCAAATCTT+GGG | - | chr5.4:28566465-28566484 | None:intergenic | 30.0% | |
| TTAATAAGTCATCACATGAG+AGG | + | chr5.4:28563203-28563222 | MS.gene49559:CDS | 30.0% | |
| TTCAAAGAAGAGAAAGATGT+TGG | + | chr5.4:28565944-28565963 | MS.gene49559:CDS | 30.0% | |
| TTCTGCTTTATATTGTGTGA+AGG | + | chr5.4:28563978-28563997 | MS.gene49559:CDS | 30.0% | |
| TTGTATGACAGGAAATCTAT+TGG | - | chr5.4:28564185-28564204 | None:intergenic | 30.0% | |
| TTTACCGGGAGAAAAAAAAA+GGG | - | chr5.4:28564558-28564577 | None:intergenic | 30.0% | |
| ! | TTATCAGCTTTTCTACTCTT+GGG | - | chr5.4:28566558-28566577 | None:intergenic | 30.0% |
| ! | TTCTTTCATTTTCTCAGAAG+AGG | - | chr5.4:28565513-28565532 | None:intergenic | 30.0% |
| !! | TACTTCAATCTACTTTTCTC+AGG | + | chr5.4:28564290-28564309 | MS.gene49559:intron | 30.0% |
| !! | TTCTTCTTCAATTTTGGAAG+AGG | - | chr5.4:28565176-28565195 | None:intergenic | 30.0% |
| !!! | GAGTGATTTGAATCCTTTTT+TGG | - | chr5.4:28565311-28565330 | None:intergenic | 30.0% |
| AAACTAAACCAAACAACCAG+AGG | - | chr5.4:28564966-28564985 | None:intergenic | 35.0% | |
| AAAGCGCAAGAAGAGAATAA+TGG | + | chr5.4:28565893-28565912 | MS.gene49559:CDS | 35.0% | |
| AACTAAACCAAACAACCAGA+GGG | - | chr5.4:28564965-28564984 | None:intergenic | 35.0% | |
| AAGCCAAAGAAGAGCTTAAA+TGG | + | chr5.4:28565686-28565705 | MS.gene49559:CDS | 35.0% | |
| AAGGTAGGAGATGAAGAAAT+AGG | + | chr5.4:28566259-28566278 | MS.gene49559:CDS | 35.0% | |
| AATCATAACAGGAGGTTGAA+TGG | - | chr5.4:28564842-28564861 | None:intergenic | 35.0% | |
| AATGTTAGACGTTCTGATAC+TGG | + | chr5.4:28564036-28564055 | MS.gene49559:CDS | 35.0% | |
| ACAAAAACAGTTTAACCAGG+AGG | + | chr5.4:28566488-28566507 | MS.gene49559:CDS | 35.0% | |
| AGAAAAGAAAACACAGCTCT+AGG | + | chr5.4:28565438-28565457 | MS.gene49559:CDS | 35.0% | |
| AGATCACTATTTAGCGATAG+AGG | - | chr5.4:28565092-28565111 | None:intergenic | 35.0% | |
| ATGCCAAAGAAGAGCTTAAA+TGG | + | chr5.4:28565992-28566011 | MS.gene49559:CDS | 35.0% | |
| ATGTTAGACGTTCTGATACT+GGG | + | chr5.4:28564037-28564056 | MS.gene49559:CDS | 35.0% | |
| CAGCTGAAATGGATATCATA+TGG | - | chr5.4:28565045-28565064 | None:intergenic | 35.0% | |
| CTAAGACAAATTGCATGTGA+TGG | - | chr5.4:28563815-28563834 | None:intergenic | 35.0% | |
| CTATCGCTAAATAGTGATCT+TGG | + | chr5.4:28565092-28565111 | MS.gene49559:CDS | 35.0% | |
| GAAAAGAAAACACAGCTCTA+GGG | + | chr5.4:28565439-28565458 | MS.gene49559:CDS | 35.0% | |
| GAAAAGCTGATAACTTTGAG+CGG | + | chr5.4:28566565-28566584 | MS.gene49559:CDS | 35.0% | |
| GATATCAGTAGCAAATCTTG+GGG | - | chr5.4:28566464-28566483 | None:intergenic | 35.0% | |
| GTAGAAATCATCGAGTAACA+AGG | + | chr5.4:28563057-28563076 | MS.gene49559:intron | 35.0% | |
| GTAGTTAGTGAAGCAATACA+AGG | - | chr5.4:28564273-28564292 | None:intergenic | 35.0% | |
| GTCAAAGAAGAGAAAGATCT+TGG | + | chr5.4:28566019-28566038 | MS.gene49559:CDS | 35.0% | |
| GTCTAATCCAATTTCAACTG+TGG | + | chr5.4:28563108-28563127 | MS.gene49559:CDS | 35.0% | |
| GTTTACCGGGAGAAAAAAAA+AGG | - | chr5.4:28564559-28564578 | None:intergenic | 35.0% | |
| TAATTGCTGCCTCTGTTATA+AGG | + | chr5.4:28562932-28562951 | MS.gene49559:intron | 35.0% | |
| TGAAATAGATGTGGTTGCAT+TGG | - | chr5.4:28563643-28563662 | None:intergenic | 35.0% | |
| TTACCGGGAGAAAAAAAAAG+GGG | - | chr5.4:28564557-28564576 | None:intergenic | 35.0% | |
| TTCGCAAGGTAAAAGTTCTT+TGG | + | chr5.4:28564076-28564095 | MS.gene49559:intron | 35.0% | |
| TTGTCAAATAGCAGCTATAG+CGG | - | chr5.4:28563463-28563482 | None:intergenic | 35.0% | |
| ! | CTGAAAAGGCACAAGTTAAA+AGG | + | chr5.4:28565213-28565232 | MS.gene49559:CDS | 35.0% |
| ! | GTAACAATGCCGATAGATTT+TGG | - | chr5.4:28564327-28564346 | None:intergenic | 35.0% |
| ! | GTTATCAGCTTTTCTACTCT+TGG | - | chr5.4:28566559-28566578 | None:intergenic | 35.0% |
| ! | TATCAGCTTTTCTACTCTTG+GGG | - | chr5.4:28566557-28566576 | None:intergenic | 35.0% |
| ! | TTGTTCTCTTCTGGTGTTTT+CGG | - | chr5.4:28565740-28565759 | None:intergenic | 35.0% |
| !! | GTACTCACTGATTCTCTATT+TGG | + | chr5.4:28563785-28563804 | MS.gene49559:intron | 35.0% |
| AAAAGCTTGACCTTGTCCAA+CGG | - | chr5.4:28565148-28565167 | None:intergenic | 40.0% | |
| AAGATGATCTTGAGACACTC+AGG | + | chr5.4:28563287-28563306 | MS.gene49559:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTCAAA+TGG | + | chr5.4:28565608-28565627 | MS.gene49559:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTTAAG+TGG | + | chr5.4:28566067-28566086 | MS.gene49559:CDS | 40.0% | |
| AAGCCAAAGAAGAGCTTGAA+TGG | + | chr5.4:28566145-28566164 | MS.gene49559:CDS | 40.0% | |
| AATCAGCAAAAGCTAGGCTA+AGG | + | chr5.4:28566428-28566447 | MS.gene49559:CDS | 40.0% | |
| ACCAAAGAAGAGAACAGTCT+TGG | + | chr5.4:28565713-28565732 | MS.gene49559:CDS | 40.0% | |
| AGAAAATGCCTTTGTTCACC+AGG | + | chr5.4:28564371-28564390 | MS.gene49559:CDS | 40.0% | |
| ATCAGCAAAAGCTAGGCTAA+GGG | + | chr5.4:28566429-28566448 | MS.gene49559:CDS | 40.0% | |
| ATGATATCCATTTCAGCTGC+TGG | + | chr5.4:28565046-28565065 | MS.gene49559:intron | 40.0% | |
| ATTAGCTCCAGATATTGGTG+CGG | - | chr5.4:28563149-28563168 | None:intergenic | 40.0% | |
| CAAATATCCGCACCAATATC+TGG | + | chr5.4:28563139-28563158 | MS.gene49559:CDS | 40.0% | |
| CACAAGTTAAAAGGACTACC+CGG | + | chr5.4:28565222-28565241 | MS.gene49559:CDS | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+CGG | + | chr5.4:28565689-28565708 | MS.gene49559:CDS | 40.0% | |
| CCAAAGAAGAGCTTAAATGG+TGG | + | chr5.4:28565689-28565708 | MS.gene49559:CDS | 40.0% | |
| CCACCATTTAAGCTCTTCTT+TGG | - | chr5.4:28565923-28565942 | None:intergenic | 40.0% | |
| CTCTCAAATGGAGAGGAAAA+GGG | + | chr5.4:28563232-28563251 | MS.gene49559:CDS | 40.0% | |
| GACTCATAGAACATACTCTG+CGG | + | chr5.4:28564220-28564239 | MS.gene49559:intron | 40.0% | |
| GCAACATTAGCTCCAGATAT+TGG | - | chr5.4:28563154-28563173 | None:intergenic | 40.0% | |
| GTCAAAGAAGAGAAAGGTCT+TGG | + | chr5.4:28565635-28565654 | MS.gene49559:CDS | 40.0% | |
| GTCAAGGAAGAGAAAGATCT+TGG | + | chr5.4:28565791-28565810 | MS.gene49559:CDS | 40.0% | |
| GTTACTGATGTTTCAGAGCA+GGG | + | chr5.4:28565479-28565498 | MS.gene49559:CDS | 40.0% | |
| TAAACAGCGCAATAGCATAG+AGG | - | chr5.4:28563536-28563555 | None:intergenic | 40.0% | |
| TCCAAGACCTTTCTCTTCTT+TGG | - | chr5.4:28565639-28565658 | None:intergenic | 40.0% | |
| TCCAAGACTGTTCTCTTCTT+TGG | - | chr5.4:28565717-28565736 | None:intergenic | 40.0% | |
| TCTTCACTTAACAGCAAGTC+AGG | + | chr5.4:28566523-28566542 | MS.gene49559:CDS | 40.0% | |
| TGATCTTGGAGAACCTTACT+TGG | + | chr5.4:28565106-28565125 | MS.gene49559:CDS | 40.0% | |
| TGTTACTGATGTTTCAGAGC+AGG | + | chr5.4:28565478-28565497 | MS.gene49559:CDS | 40.0% | |
| TTACTGATGTTTCAGAGCAG+GGG | + | chr5.4:28565480-28565499 | MS.gene49559:CDS | 40.0% | |
| TTCCACTTAACAGCGTATCA+CGG | + | chr5.4:28563487-28563506 | MS.gene49559:intron | 40.0% | |
| TTGAGATGCAGCATTAGCAA+AGG | - | chr5.4:28563269-28563288 | None:intergenic | 40.0% | |
| TTTCTTTCCCTCTGGTTGTT+TGG | + | chr5.4:28564955-28564974 | MS.gene49559:intron | 40.0% | |
| ! | CTGCCATTTAAGCTCTTCTT+TGG | - | chr5.4:28565692-28565711 | None:intergenic | 40.0% |
| ! | CTTTTACCTTGCGAACTTTC+AGG | - | chr5.4:28564071-28564090 | None:intergenic | 40.0% |
| ! | TCTGAGACCTTTCTCTTCTT+TGG | - | chr5.4:28566176-28566195 | None:intergenic | 40.0% |
| ! | TTGGACAAGGTCAAGCTTTT+GGG | + | chr5.4:28565148-28565167 | MS.gene49559:CDS | 40.0% |
| ! | TTTTCTGACAGCTTGTCTTC+CGG | - | chr5.4:28564357-28564376 | None:intergenic | 40.0% |
| !!! | CTAGCTTTTGCTGATTCAGT+CGG | - | chr5.4:28566424-28566443 | None:intergenic | 40.0% |
| AAACTTCAGTCTGCTTGCAG+AGG | + | chr5.4:28563328-28563347 | MS.gene49559:CDS | 45.0% | |
| AAATGGAGAGGAAAAGGGTC+AGG | + | chr5.4:28563237-28563256 | MS.gene49559:CDS | 45.0% | |
| AACCTTACTTGGCTTCGAAG+TGG | + | chr5.4:28565117-28565136 | MS.gene49559:CDS | 45.0% | |
| AACTTCATTGAAGGCTCGTC+AGG | + | chr5.4:28563882-28563901 | MS.gene49559:intron | 45.0% | |
| AAGGAAGAAGTCCTGGGAAA+TGG | + | chr5.4:28562786-28562805 | MS.gene49559:CDS | 45.0% | |
| AATGCCTTTGTTCACCAGGT+AGG | + | chr5.4:28564375-28564394 | MS.gene49559:intron | 45.0% | |
| ACTGCTGTCTTACAGACTAG+TGG | + | chr5.4:28566232-28566251 | MS.gene49559:CDS | 45.0% | |
| AGAAACTTCGGACTCAGTTG+AGG | - | chr5.4:28564758-28564777 | None:intergenic | 45.0% | |
| AGATGAAAGTGAATGCCTCC+TGG | - | chr5.4:28566506-28566525 | None:intergenic | 45.0% | |
| AGCTCTTATTCGTGGTCACT+TGG | + | chr5.4:28563939-28563958 | MS.gene49559:CDS | 45.0% | |
| AGTTCCTACCTGGTGAACAA+AGG | - | chr5.4:28564382-28564401 | None:intergenic | 45.0% | |
| ATCGAGTAACAAGGATGCAC+TGG | + | chr5.4:28563066-28563085 | MS.gene49559:CDS | 45.0% | |
| CCAAAGAAGAGCTCAAATGG+TGG | + | chr5.4:28565611-28565630 | MS.gene49559:CDS | 45.0% | |
| CCAAAGAAGAGCTTAAGTGG+CGG | + | chr5.4:28566070-28566089 | MS.gene49559:CDS | 45.0% | |
| CCACCATTTGAGCTCTTCTT+TGG | - | chr5.4:28565614-28565633 | None:intergenic | 45.0% | |
| CCGCCATTTAAGCTCTTCTT+TGG | - | chr5.4:28565770-28565789 | None:intergenic | 45.0% | |
| CCTCTCAAATGGAGAGGAAA+AGG | + | chr5.4:28563231-28563250 | MS.gene49559:CDS | 45.0% | |
| CGACTGAATCAGCAAAAGCT+AGG | + | chr5.4:28566422-28566441 | MS.gene49559:CDS | 45.0% | |
| CGGCATTGTTACATCTACAC+CGG | + | chr5.4:28564335-28564354 | MS.gene49559:CDS | 45.0% | |
| CTAGTCTGTAAGACAGCAGT+AGG | - | chr5.4:28566232-28566251 | None:intergenic | 45.0% | |
| CTGATAACTTTGAGCGGAAG+AGG | + | chr5.4:28566571-28566590 | MS.gene49559:CDS | 45.0% | |
| CTGCCATTCAAGCTCTTCTT+TGG | - | chr5.4:28566151-28566170 | None:intergenic | 45.0% | |
| CTGCTGTCTTACAGACTAGT+GGG | + | chr5.4:28566233-28566252 | MS.gene49559:CDS | 45.0% | |
| CTTACAGACTAGTGGGAAGA+AGG | + | chr5.4:28566240-28566259 | MS.gene49559:CDS | 45.0% | |
| GAGAGGGATATCCTCTCAAA+TGG | + | chr5.4:28563220-28563239 | MS.gene49559:CDS | 45.0% | |
| GCCAAAGAAGAGAAAGGTCT+TGG | + | chr5.4:28565866-28565885 | MS.gene49559:CDS | 45.0% | |
| GGAGTTAGCGAAGACTTGAA+TGG | + | chr5.4:28566280-28566299 | MS.gene49559:CDS | 45.0% | |
| GGATATCCTCTCAAATGGAG+AGG | + | chr5.4:28563225-28563244 | MS.gene49559:CDS | 45.0% | |
| GGCTTATCGTTGTTCTCTTC+TGG | - | chr5.4:28565749-28565768 | None:intergenic | 45.0% | |
| GTTAGCGAAGACTTGAATGG+CGG | + | chr5.4:28566283-28566302 | MS.gene49559:CDS | 45.0% | |
| TAGCGATAGAGGAAACGCAT+GGG | - | chr5.4:28565081-28565100 | None:intergenic | 45.0% | |
| TCAGCAAAAGCTAGGCTAAG+GGG | + | chr5.4:28566430-28566449 | MS.gene49559:CDS | 45.0% | |
| TCAGTCGGAGCCATATAACT+CGG | - | chr5.4:28566409-28566428 | None:intergenic | 45.0% | |
| TCCAAGACCTTTCTCTGCTT+TGG | - | chr5.4:28566098-28566117 | None:intergenic | 45.0% | |
| TCGAGTAACAAGGATGCACT+GGG | + | chr5.4:28563067-28563086 | MS.gene49559:CDS | 45.0% | |
| TCTCTGTCATCTTCAAGGGA+CGG | + | chr5.4:28566613-28566632 | MS.gene49559:CDS | 45.0% | |
| TCTGTCCAAGACCTTTCTCA+GGG | - | chr5.4:28565565-28565584 | None:intergenic | 45.0% | |
| TCTTGAGACACTCAGGCTTA+CGG | + | chr5.4:28563294-28563313 | MS.gene49559:CDS | 45.0% | |
| TTAGCGATAGAGGAAACGCA+TGG | - | chr5.4:28565082-28565101 | None:intergenic | 45.0% | |
| TTCCGTGATACGCTGTTAAG+TGG | - | chr5.4:28563492-28563511 | None:intergenic | 45.0% | |
| TTCTGTCCAAGACCTTTCTC+AGG | - | chr5.4:28565566-28565585 | None:intergenic | 45.0% | |
| ! | AAGCCAAAGAAGAGCGTAAG+TGG | + | chr5.4:28565839-28565858 | MS.gene49559:CDS | 45.0% |
| ! | CCTTTTCCTCTCCATTTGAG+AGG | - | chr5.4:28563234-28563253 | None:intergenic | 45.0% |
| ! | GGTGGTGTCAAAGAAGAGAA+AGG | + | chr5.4:28565629-28565648 | MS.gene49559:CDS | 45.0% |
| ! | GTTGGACAAGGTCAAGCTTT+TGG | + | chr5.4:28565147-28565166 | MS.gene49559:CDS | 45.0% |
| !! | CACTCTCGACTCGACTTTTA+GGG | + | chr5.4:28564621-28564640 | MS.gene49559:intron | 45.0% |
| !! | CAGAAAGCACTAGAACAGGA+AGG | + | chr5.4:28566196-28566215 | MS.gene49559:CDS | 45.0% |
| !! | CAGACAGAAAGCACTAGAAC+AGG | + | chr5.4:28566192-28566211 | MS.gene49559:CDS | 45.0% |
| !! | GAAGAAACTTGACTCGGTGT+CGG | + | chr5.4:28565190-28565209 | MS.gene49559:CDS | 45.0% |
| !! | TCACTCATTGGTTTCAGCTC+AGG | + | chr5.4:28565325-28565344 | MS.gene49559:CDS | 45.0% |
| !! | TCACTCTCGACTCGACTTTT+AGG | + | chr5.4:28564620-28564639 | MS.gene49559:intron | 45.0% |
| !! | TCCAAGAGTGCCGAGTTATA+TGG | + | chr5.4:28566396-28566415 | MS.gene49559:CDS | 45.0% |
| !!! | CCTCCCCTTTTTTTTTCTCC+CGG | + | chr5.4:28564551-28564570 | MS.gene49559:intron | 45.0% |
| AAAGCTAGGCTAAGGGGACA+AGG | + | chr5.4:28566436-28566455 | MS.gene49559:CDS | 50.0% | |
| AAGCTCCTGATCCATTTCCC+AGG | - | chr5.4:28562800-28562819 | None:intergenic | 50.0% | |
| ACGTTCTGATACTGGGCTTG+AGG | + | chr5.4:28564044-28564063 | MS.gene49559:CDS | 50.0% | |
| AGCCACTTCGAAGCCAAGTA+AGG | - | chr5.4:28565122-28565141 | None:intergenic | 50.0% | |
| ATCAGGAGCTTACTCTCAGG+GGG | + | chr5.4:28562809-28562828 | MS.gene49559:CDS | 50.0% | |
| ATGGGGAAAGGAAGAAGTCC+TGG | + | chr5.4:28562779-28562798 | MS.gene49559:CDS | 50.0% | |
| CAGACTAGTGGGAAGAAGGT+AGG | + | chr5.4:28566244-28566263 | MS.gene49559:CDS | 50.0% | |
| CAGCTGCAAGCTCTTATTCG+TGG | + | chr5.4:28563931-28563950 | MS.gene49559:CDS | 50.0% | |
| CAGGCAGTGAAGCTCTTCTT+TGG | - | chr5.4:28566333-28566352 | None:intergenic | 50.0% | |
| CCGCCACTTAAGCTCTTCTT+TGG | - | chr5.4:28566073-28566092 | None:intergenic | 50.0% | |
| CCGGGAGAAAAAAAAAGGGG+AGG | - | chr5.4:28564554-28564573 | None:intergenic | 50.0% | |
| CTCTGTCATCTTCAAGGGAC+GGG | + | chr5.4:28566614-28566633 | MS.gene49559:CDS | 50.0% | |
| CTTTCACGGCAGGTGATTTC+CGG | - | chr5.4:28565244-28565263 | None:intergenic | 50.0% | |
| GAAGAGTCTTGCCCTGAGAA+AGG | + | chr5.4:28565551-28565570 | MS.gene49559:CDS | 50.0% | |
| GAAGTCCTGGGAAATGGATC+AGG | + | chr5.4:28562792-28562811 | MS.gene49559:CDS | 50.0% | |
| GATCAGGAGCTTACTCTCAG+GGG | + | chr5.4:28562808-28562827 | MS.gene49559:CDS | 50.0% | |
| GATGAAGCCAGCAGCTGAAA+TGG | - | chr5.4:28565056-28565075 | None:intergenic | 50.0% | |
| GATGCAGCATTAGCAAAGGC+TGG | - | chr5.4:28563265-28563284 | None:intergenic | 50.0% | |
| GCCAAAGCAGAGAAAGGTCT+TGG | + | chr5.4:28566094-28566113 | MS.gene49559:CDS | 50.0% | |
| GCCATATAACTCGGCACTCT+TGG | - | chr5.4:28566400-28566419 | None:intergenic | 50.0% | |
| GGATCAGGAGCTTACTCTCA+GGG | + | chr5.4:28562807-28562826 | MS.gene49559:CDS | 50.0% | |
| GGCAGTGCCAAAGAAGAGAA+AGG | + | chr5.4:28566166-28566185 | MS.gene49559:CDS | 50.0% | |
| GGGCAAGACTCTTCTGACTT+TGG | - | chr5.4:28565545-28565564 | None:intergenic | 50.0% | |
| TAACTCGGCACTCTTGGACT+TGG | - | chr5.4:28566394-28566413 | None:intergenic | 50.0% | |
| TAGAACATACTCTGCGGCGT+AGG | + | chr5.4:28564226-28564245 | MS.gene49559:intron | 50.0% | |
| TCTTGCCCTGAGAAAGGTCT+TGG | + | chr5.4:28565557-28565576 | MS.gene49559:CDS | 50.0% | |
| TGAGCCCTCATCAGCTTTCA+CGG | - | chr5.4:28565258-28565277 | None:intergenic | 50.0% | |
| TGAGGTCCTGAAAGTTCGCA+AGG | + | chr5.4:28564062-28564081 | MS.gene49559:CDS | 50.0% | |
| TGGATCAGGAGCTTACTCTC+AGG | + | chr5.4:28562806-28562825 | MS.gene49559:CDS | 50.0% | |
| TGGGGAAAGGAAGAAGTCCT+GGG | + | chr5.4:28562780-28562799 | MS.gene49559:CDS | 50.0% | |
| TTTCACGGCAGGTGATTTCC+GGG | - | chr5.4:28565243-28565262 | None:intergenic | 50.0% | |
| ! | CCAAAGAAGAGCGTAAGTGG+CGG | + | chr5.4:28565842-28565861 | MS.gene49559:CDS | 50.0% |
| ! | GAGCTTAAATGGCGGTGTCA+AGG | + | chr5.4:28565775-28565794 | MS.gene49559:CDS | 50.0% |
| !! | AAAGTGCAAGCATTGGCTCG+TGG | + | chr5.4:28564009-28564028 | MS.gene49559:CDS | 50.0% |
| ACCTGCCGTGAAAGCTGATG+AGG | + | chr5.4:28565250-28565269 | MS.gene49559:CDS | 55.0% | |
| AGTGGCTTGACCGTTGGACA+AGG | + | chr5.4:28565135-28565154 | MS.gene49559:CDS | 55.0% | |
| CCGCCACTTACGCTCTTCTT+TGG | - | chr5.4:28565845-28565864 | None:intergenic | 55.0% | |
| CCTGCCGTGAAAGCTGATGA+GGG | + | chr5.4:28565251-28565270 | MS.gene49559:CDS | 55.0% | |
| CTTCGAAGTGGCTTGACCGT+TGG | + | chr5.4:28565129-28565148 | MS.gene49559:CDS | 55.0% | |
| GATGTTTCAGAGCAGGGGTC+AGG | + | chr5.4:28565485-28565504 | MS.gene49559:CDS | 55.0% | |
| GCTGATGAGGGCTCAAGTTC+TGG | + | chr5.4:28565263-28565282 | MS.gene49559:CDS | 55.0% | |
| GTCTGCTTGCAGAGGCTATC+AGG | + | chr5.4:28563336-28563355 | MS.gene49559:CDS | 55.0% | |
| TCAGGAGCTTACTCTCAGGG+GGG | + | chr5.4:28562810-28562829 | MS.gene49559:CDS | 55.0% | |
| TCATCTTCAAGGGACGGGAC+TGG | + | chr5.4:28566619-28566638 | MS.gene49559:CDS | 55.0% | |
| TGAGCGGAAGAGGAGTTGCA+AGG | + | chr5.4:28566581-28566600 | MS.gene49559:CDS | 55.0% | |
| ! | GGCGGTGCCAAAGAAGAGAA+AGG | + | chr5.4:28565860-28565879 | MS.gene49559:CDS | 55.0% |
| !! | TGACTCGGTGTCGGCTGAAA+AGG | + | chr5.4:28565199-28565218 | MS.gene49559:CDS | 55.0% |
| CCCTCATCAGCTTTCACGGC+AGG | - | chr5.4:28565254-28565273 | None:intergenic | 60.0% | |
| ! | GGCGGTGCCAAAGCAGAGAA+AGG | + | chr5.4:28566088-28566107 | MS.gene49559:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 28562779 | 28566654 | 28562779 | ID=MS.gene49559 |
| chr5.4 | mRNA | 28562779 | 28566654 | 28562779 | ID=MS.gene49559.t1;Parent=MS.gene49559 |
| chr5.4 | exon | 28562779 | 28562880 | 28562779 | ID=MS.gene49559.t1.exon1;Parent=MS.gene49559.t1 |
| chr5.4 | CDS | 28562779 | 28562880 | 28562779 | ID=cds.MS.gene49559.t1;Parent=MS.gene49559.t1 |
| chr5.4 | exon | 28563061 | 28563357 | 28563061 | ID=MS.gene49559.t1.exon2;Parent=MS.gene49559.t1 |
| chr5.4 | CDS | 28563061 | 28563357 | 28563061 | ID=cds.MS.gene49559.t1;Parent=MS.gene49559.t1 |
| chr5.4 | exon | 28563895 | 28564083 | 28563895 | ID=MS.gene49559.t1.exon3;Parent=MS.gene49559.t1 |
| chr5.4 | CDS | 28563895 | 28564083 | 28563895 | ID=cds.MS.gene49559.t1;Parent=MS.gene49559.t1 |
| chr5.4 | exon | 28564312 | 28564392 | 28564312 | ID=MS.gene49559.t1.exon4;Parent=MS.gene49559.t1 |
| chr5.4 | CDS | 28564312 | 28564392 | 28564312 | ID=cds.MS.gene49559.t1;Parent=MS.gene49559.t1 |
| chr5.4 | exon | 28565062 | 28566654 | 28565062 | ID=MS.gene49559.t1.exon5;Parent=MS.gene49559.t1 |
| chr5.4 | CDS | 28565062 | 28566654 | 28565062 | ID=cds.MS.gene49559.t1;Parent=MS.gene49559.t1 |
| Gene Sequence |
| Protein sequence |
