Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51044.t1 | XP_003608997.2 | 95.8 | 285 | 12 | 0 | 1 | 285 | 1 | 285 | 7.20E-149 | 536.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51044.t1 | Q6L4S3 | 89.4 | 284 | 30 | 0 | 1 | 284 | 1 | 284 | 3.0e-143 | 509.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51044.t1 | G7JPW8 | 95.8 | 285 | 12 | 0 | 1 | 285 | 1 | 285 | 5.2e-149 | 536.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene68929 | MS.gene51044 | PPI |
| MS.gene51044 | MS.gene030984 | PPI |
| MS.gene51044 | MS.gene028857 | PPI |
| MS.gene31416 | MS.gene51044 | PPI |
| MS.gene043467 | MS.gene51044 | PPI |
| MS.gene51044 | MS.gene055768 | PPI |
| MS.gene20481 | MS.gene51044 | PPI |
| MS.gene51044 | MS.gene029948 | PPI |
| MS.gene51044 | MS.gene59292 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51044.t1 | MTR_4g107810 | 95.455 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 0.0 | 551 |
| MS.gene51044.t1 | MTR_4g107760 | 95.455 | 286 | 13 | 0 | 1 | 286 | 1 | 286 | 0.0 | 551 |
| MS.gene51044.t1 | MTR_4g107810 | 95.455 | 286 | 13 | 0 | 1 | 286 | 61 | 346 | 0.0 | 549 |
| MS.gene51044.t1 | MTR_4g107830 | 89.226 | 297 | 17 | 1 | 1 | 282 | 1 | 297 | 0.0 | 543 |
| MS.gene51044.t1 | MTR_4g107720 | 94.681 | 282 | 15 | 0 | 1 | 282 | 1 | 282 | 0.0 | 538 |
| MS.gene51044.t1 | MTR_6g011380 | 83.333 | 282 | 47 | 0 | 1 | 282 | 1 | 282 | 6.43e-179 | 494 |
| MS.gene51044.t1 | MTR_4g107730 | 87.676 | 284 | 29 | 2 | 1 | 282 | 1 | 280 | 7.39e-178 | 491 |
| MS.gene51044.t1 | MTR_8g469160 | 78.445 | 283 | 61 | 0 | 1 | 283 | 1 | 283 | 2.50e-175 | 485 |
| MS.gene51044.t1 | MTR_6g460470 | 56.338 | 284 | 122 | 1 | 1 | 282 | 1 | 284 | 6.35e-116 | 335 |
| MS.gene51044.t1 | MTR_4g107700 | 98.765 | 81 | 1 | 0 | 202 | 282 | 6 | 86 | 5.26e-51 | 162 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51044.t1 | AT5G62740 | 88.652 | 282 | 32 | 0 | 1 | 282 | 1 | 282 | 0.0 | 525 |
| MS.gene51044.t1 | AT3G01290 | 80.142 | 282 | 56 | 0 | 1 | 282 | 1 | 282 | 1.25e-171 | 476 |
| MS.gene51044.t1 | AT1G69840 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 2.05e-169 | 470 |
| MS.gene51044.t1 | AT1G69840 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 2.05e-169 | 470 |
| MS.gene51044.t1 | AT1G69840 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 2.05e-169 | 470 |
| MS.gene51044.t1 | AT1G69840 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 2.05e-169 | 470 |
| MS.gene51044.t1 | AT1G69840 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 2.05e-169 | 470 |
| MS.gene51044.t1 | AT1G69840 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 2.05e-169 | 470 |
| MS.gene51044.t1 | AT1G69840 | 80.851 | 282 | 54 | 0 | 1 | 282 | 1 | 282 | 2.05e-169 | 470 |
| MS.gene51044.t1 | AT5G51570 | 56.338 | 284 | 122 | 1 | 1 | 282 | 1 | 284 | 1.52e-119 | 344 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.235356 | 8.2:-17841684 | MS.gene51044:CDS |
| GCATCATCCAAGTTGAGTTT+TGG | 0.266671 | 8.2:+17842685 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.2:+17841595 | None:intergenic |
| CATTGCATGCCATGGTTTCT+TGG | 0.290257 | 8.2:-17843289 | MS.gene51044:CDS |
| TATTCTCATTGCAGTGATTA+GGG | 0.314464 | 8.2:-17842716 | MS.gene51044:intron |
| ATATTCTCATTGCAGTGATT+AGG | 0.341663 | 8.2:-17842717 | MS.gene51044:intron |
| CACTCTTCGGCTACAACAAT+TGG | 0.343058 | 8.2:-17843245 | MS.gene51044:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.360895 | 8.2:-17842543 | MS.gene51044:intron |
| AATGAACACAGCAGAAGATT+TGG | 0.365320 | 8.2:+17841653 | None:intergenic |
| TGCAAAAGATGTCATGGATA+TGG | 0.384185 | 8.2:-17841724 | MS.gene51044:CDS |
| TTTCTTGGAAAACGAATTGC+TGG | 0.394254 | 8.2:-17843274 | MS.gene51044:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.398028 | 8.2:-17843343 | MS.gene51044:CDS |
| GCCGTCTTCACATGCTGATC+TGG | 0.412070 | 8.2:+17842483 | None:intergenic |
| TTCTATTCAATACCGGGCCT+TGG | 0.414467 | 8.2:-17842904 | MS.gene51044:CDS |
| GTCTAAATATCTCTCTGGGC+TGG | 0.425139 | 8.2:-17841829 | MS.gene51044:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.2:-17841774 | MS.gene51044:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.2:-17841592 | MS.gene51044:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.451469 | 8.2:-17841834 | MS.gene51044:CDS |
| TTGTTGCTTCTATTCAATAC+CGG | 0.460578 | 8.2:-17842911 | MS.gene51044:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.2:-17843317 | MS.gene51044:CDS |
| TTGCTGGTCATCTCACTCTT+CGG | 0.485262 | 8.2:-17843258 | MS.gene51044:CDS |
| TCTAAATATCTCTCTGGGCT+GGG | 0.486024 | 8.2:-17841828 | MS.gene51044:CDS |
| TTGCCTTGTCTGCCAAGGCC+CGG | 0.495300 | 8.2:+17842892 | None:intergenic |
| CGGGATGCCATTGCATGCCA+TGG | 0.503619 | 8.2:-17843297 | MS.gene51044:CDS |
| ATCATTTGCCTTGTCTGCCA+AGG | 0.508438 | 8.2:+17842887 | None:intergenic |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.2:-17843316 | MS.gene51044:CDS |
| TGTGATCAGCTGCAAGATTG+AGG | 0.516144 | 8.2:-17841920 | MS.gene51044:intron |
| CAGCGTCAAGCCATTGTGGA+TGG | 0.520226 | 8.2:-17841795 | MS.gene51044:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.2:+17843298 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.2:-17841639 | MS.gene51044:CDS |
| TAACAAACCAACCTTTGTCT+TGG | 0.535367 | 8.2:+17843207 | None:intergenic |
| TGTTGCTTCTATTCAATACC+GGG | 0.541278 | 8.2:-17842910 | MS.gene51044:CDS |
| GCCAGATCAGCATGTGAAGA+CGG | 0.545669 | 8.2:-17842484 | MS.gene51044:CDS |
| AATTAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.2:-17841856 | MS.gene51044:CDS |
| GTGATCAGCTGCAAGATTGA+GGG | 0.554251 | 8.2:-17841919 | MS.gene51044:intron |
| GCTATGAATGAAATCAATGC+TGG | 0.556275 | 8.2:-17842462 | MS.gene51044:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.2:+17841621 | None:intergenic |
| GAACACAGCAGAAGATTTGG+AGG | 0.560535 | 8.2:+17841656 | None:intergenic |
| GACGACTGCAAAAGATGTCA+TGG | 0.572197 | 8.2:-17841730 | MS.gene51044:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.573023 | 8.2:-17841833 | MS.gene51044:CDS |
| TCTGCTGTGTTCATTCCACA+TGG | 0.577031 | 8.2:-17841645 | MS.gene51044:CDS |
| CAAGAAACCATGGCATGCAA+TGG | 0.579517 | 8.2:+17843290 | None:intergenic |
| AAATGAAATCGCAAAAGCTG+TGG | 0.586140 | 8.2:-17842650 | MS.gene51044:CDS |
| ATACCGGGCCTTGGCAGACA+AGG | 0.587410 | 8.2:-17842895 | MS.gene51044:CDS |
| CATCCACAATGGCTTGACGC+TGG | 0.591027 | 8.2:+17841796 | None:intergenic |
| TCTCAAGTGGCTATGAGAGA+AGG | 0.594736 | 8.2:-17843349 | MS.gene51044:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.2:+17841845 | None:intergenic |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.2:-17842632 | MS.gene51044:intron |
| AAGTGTTCCAAAACTCAACT+TGG | 0.607104 | 8.2:-17842692 | MS.gene51044:CDS |
| CATGATGAGTTAGAGAACCC+TGG | 0.607138 | 8.2:+17841574 | None:intergenic |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.2:-17843362 | MS.gene51044:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.2:-17841603 | MS.gene51044:CDS |
| TTGCAAATTAAGCGAGCCGA+GGG | 0.623495 | 8.2:-17841861 | MS.gene51044:CDS |
| GAGGGTGGCAGCGAATGAGA+AGG | 0.631840 | 8.2:-17841901 | MS.gene51044:CDS |
| TCGCCAGCGTCAAGCCATTG+TGG | 0.633446 | 8.2:-17841799 | MS.gene51044:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.2:-17841591 | MS.gene51044:CDS |
| CTTGCAAATTAAGCGAGCCG+AGG | 0.639259 | 8.2:-17841862 | MS.gene51044:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.2:-17843218 | MS.gene51044:intron |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8.2:+17841785 | None:intergenic |
| TTTACAAACTTAGCAATACG+AGG | 0.670765 | 8.2:-17842860 | MS.gene51044:CDS |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.2:+17841630 | None:intergenic |
| ATCAGCTGCAAGATTGAGGG+TGG | 0.703805 | 8.2:-17841916 | MS.gene51044:intron |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.2:+17841700 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAATAAGTATAAGAAAATA+TGG | + | chr8.2:17843009-17843028 | None:intergenic | 15.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | + | chr8.2:17841821-17841840 | None:intergenic | 15.0% |
| !!! | TTTAGCTAGAATATTTTTTT+AGG | - | chr8.2:17841840-17841859 | MS.gene51044:CDS | 15.0% |
| !! | AATATGCAAATTATCTACTA+AGG | - | chr8.2:17842206-17842225 | MS.gene51044:intron | 20.0% |
| !! | CTTATATGTTTGCTTAAATA+TGG | - | chr8.2:17841892-17841911 | MS.gene51044:CDS | 20.0% |
| !! | TTATACTTCATACAATATCT+AGG | + | chr8.2:17842901-17842920 | None:intergenic | 20.0% |
| !! | TTTAATATTTATTTGGTTGC+AGG | - | chr8.2:17842002-17842021 | MS.gene51044:intron | 20.0% |
| !!! | ACAAATAGTATTTACTGATT+AGG | - | chr8.2:17842356-17842375 | MS.gene51044:intron | 20.0% |
| !!! | GACTGGTTTTAATATTTATT+TGG | - | chr8.2:17841995-17842014 | MS.gene51044:intron | 20.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | + | chr8.2:17841812-17841831 | None:intergenic | 25.0% |
| ! | TCATATAGAAACAATGTTGT+GGG | + | chr8.2:17842545-17842564 | None:intergenic | 25.0% |
| ! | TTCATATAGAAACAATGTTG+TGG | + | chr8.2:17842546-17842565 | None:intergenic | 25.0% |
| ! | TTCCATTGCACAAATTATTT+AGG | - | chr8.2:17842774-17842793 | MS.gene51044:intron | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.2:17843270-17843289 | MS.gene51044:CDS | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | - | chr8.2:17841625-17841644 | MS.gene51044:CDS | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | + | chr8.2:17841943-17841962 | None:intergenic | 25.0% |
| AAAGAAGCAAAACAAACCAA+AGG | + | chr8.2:17842805-17842824 | None:intergenic | 30.0% | |
| AAGAAGCAAAACAAACCAAA+GGG | + | chr8.2:17842804-17842823 | None:intergenic | 30.0% | |
| AATCAAAATAACATAGCACC+AGG | + | chr8.2:17841872-17841891 | None:intergenic | 30.0% | |
| AATTATTTAGGCATTCCCTT+TGG | - | chr8.2:17842786-17842805 | MS.gene51044:intron | 30.0% | |
| ACATGTATGGAAAACTATTG+AGG | - | chr8.2:17842700-17842719 | MS.gene51044:CDS | 30.0% | |
| ATATGGCAATTCATGAACAA+AGG | + | chr8.2:17842992-17843011 | None:intergenic | 30.0% | |
| ATATTCTCATTGCAGTGATT+AGG | - | chr8.2:17842237-17842256 | MS.gene51044:intron | 30.0% | |
| ATCTCTTTCACTATTGTATC+AGG | - | chr8.2:17841917-17841936 | MS.gene51044:intron | 30.0% | |
| CATATAGAAACAATGTTGTG+GGG | + | chr8.2:17842544-17842563 | None:intergenic | 30.0% | |
| TACATGTATGACGAACTATA+AGG | + | chr8.2:17842687-17842706 | None:intergenic | 30.0% | |
| TACCATCAAAAACATAAGCT+TGG | + | chr8.2:17842128-17842147 | None:intergenic | 30.0% | |
| TATAGTTCGTCATACATGTA+TGG | - | chr8.2:17842687-17842706 | MS.gene51044:CDS | 30.0% | |
| TATGGCAATTCATGAACAAA+GGG | + | chr8.2:17842991-17843010 | None:intergenic | 30.0% | |
| TATTCTCATTGCAGTGATTA+GGG | - | chr8.2:17842238-17842257 | MS.gene51044:intron | 30.0% | |
| TGTGCAATGGAAATAGATTT+AGG | + | chr8.2:17842766-17842785 | None:intergenic | 30.0% | |
| TTTACAAACTTAGCAATACG+AGG | - | chr8.2:17842094-17842113 | MS.gene51044:intron | 30.0% | |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.2:17843202-17843221 | MS.gene51044:intron | 30.0% |
| ! | TAATTTTGAATCACCTCAAC+AGG | - | chr8.2:17842395-17842414 | MS.gene51044:intron | 30.0% |
| ! | TCTACATTTTTCTCATTGAC+TGG | - | chr8.2:17841978-17841997 | MS.gene51044:intron | 30.0% |
| ! | TGCCTAAATAATTTGTGCAA+TGG | + | chr8.2:17842779-17842798 | None:intergenic | 30.0% |
| ! | TTGTTGCTTCTATTCAATAC+CGG | - | chr8.2:17842043-17842062 | MS.gene51044:intron | 30.0% |
| ! | TTTTATCTTATTCCCCAAAG+AGG | - | chr8.2:17842604-17842623 | MS.gene51044:intron | 30.0% |
| !! | ATCCAAGCTTATGTTTTTGA+TGG | - | chr8.2:17842123-17842142 | MS.gene51044:intron | 30.0% |
| !!! | TATTTTTTTAGGTGTCATCC+TGG | - | chr8.2:17841851-17841870 | MS.gene51044:CDS | 30.0% |
| !!! | TGGTTTGTTTTGCTTCTTTA+GGG | - | chr8.2:17842806-17842825 | MS.gene51044:intron | 30.0% |
| !!! | TTGGTTTGTTTTGCTTCTTT+AGG | - | chr8.2:17842805-17842824 | MS.gene51044:intron | 30.0% |
| AAACACTTCTTGACCTCTTT+GGG | + | chr8.2:17842620-17842639 | None:intergenic | 35.0% | |
| AAATGAAATCGCAAAAGCTG+TGG | - | chr8.2:17842304-17842323 | MS.gene51044:intron | 35.0% | |
| AAGACAGTCATGCTATGATA+TGG | - | chr8.2:17842834-17842853 | MS.gene51044:CDS | 35.0% | |
| AAGTGTTCCAAAACTCAACT+TGG | - | chr8.2:17842262-17842281 | MS.gene51044:intron | 35.0% | |
| AATGAACACAGCAGAAGATT+TGG | + | chr8.2:17843304-17843323 | None:intergenic | 35.0% | |
| ACGAACTATAAGGAAGGAAA+AGG | + | chr8.2:17842677-17842696 | None:intergenic | 35.0% | |
| ATGGCAATTCATGAACAAAG+GGG | + | chr8.2:17842990-17843009 | None:intergenic | 35.0% | |
| CATGGAATGACATGAAGATT+TGG | + | chr8.2:17841794-17841813 | None:intergenic | 35.0% | |
| CGAACTATAAGGAAGGAAAA+GGG | + | chr8.2:17842676-17842695 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.2:17843121-17843140 | MS.gene51044:intron | 35.0% | |
| GATATTTGGCATATAGCACT+CGG | + | chr8.2:17842968-17842987 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.2:17842492-17842511 | MS.gene51044:CDS | 35.0% | |
| GGTAATACATAGATCACACA+AGG | + | chr8.2:17842880-17842899 | None:intergenic | 35.0% | |
| GTACATAAACATGCAACAAG+TGG | - | chr8.2:17842177-17842196 | MS.gene51044:intron | 35.0% | |
| TAAACACTTCTTGACCTCTT+TGG | + | chr8.2:17842621-17842640 | None:intergenic | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | + | chr8.2:17841750-17841769 | None:intergenic | 35.0% | |
| TCATGAACAAAGGGGATATT+TGG | + | chr8.2:17842982-17843001 | None:intergenic | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.2:17843230-17843249 | MS.gene51044:CDS | 35.0% | |
| TGTATGACGAACTATAAGGA+AGG | + | chr8.2:17842683-17842702 | None:intergenic | 35.0% | |
| TTGCATGTTTATGTACTGCT+AGG | + | chr8.2:17842173-17842192 | None:intergenic | 35.0% | |
| TTTCTTGGAAAACGAATTGC+TGG | - | chr8.2:17841680-17841699 | MS.gene51044:CDS | 35.0% | |
| ! | ATCATAGCATGACTGTCTTT+TGG | + | chr8.2:17842833-17842852 | None:intergenic | 35.0% |
| ! | ATTCGTTTTCCAAGAAACCA+TGG | + | chr8.2:17841677-17841696 | None:intergenic | 35.0% |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.2:17843201-17843220 | MS.gene51044:intron | 35.0% |
| ! | TGTTGCTTCTATTCAATACC+GGG | - | chr8.2:17842044-17842063 | MS.gene51044:intron | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.2:17843257-17843276 | None:intergenic | 35.0% |
| AACACTTCTTGACCTCTTTG+GGG | + | chr8.2:17842619-17842638 | None:intergenic | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.2:17841736-17841755 | MS.gene51044:CDS | 40.0% | |
| CTATAAGGAAGGAAAAGGGT+AGG | + | chr8.2:17842672-17842691 | None:intergenic | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.2:17843120-17843139 | MS.gene51044:intron | 40.0% | |
| TCTAAATATCTCTCTGGGCT+GGG | - | chr8.2:17843126-17843145 | MS.gene51044:intron | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.2:17842322-17842341 | MS.gene51044:intron | 40.0% | |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.2:17841637-17841656 | MS.gene51044:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.2:17841592-17841611 | MS.gene51044:CDS | 40.0% |
| !! | GCATCATCCAAGTTGAGTTT+TGG | + | chr8.2:17842272-17842291 | None:intergenic | 40.0% |
| AATGTTGTGGGGACATCTCA+CGG | + | chr8.2:17842533-17842552 | None:intergenic | 45.0% | |
| ATCATTTGCCTTGTCTGCCA+AGG | + | chr8.2:17842070-17842089 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.2:17842411-17842430 | MS.gene51044:intron | 45.0% | |
| CAAGAAACCATGGCATGCAA+TGG | + | chr8.2:17841667-17841686 | None:intergenic | 45.0% | |
| CACTCTTCGGCTACAACAAT+TGG | - | chr8.2:17841709-17841728 | MS.gene51044:CDS | 45.0% | |
| CATGATGAGTTAGAGAACCC+TGG | + | chr8.2:17843383-17843402 | None:intergenic | 45.0% | |
| CATTGCATGCCATGGTTTCT+TGG | - | chr8.2:17841665-17841684 | MS.gene51044:CDS | 45.0% | |
| GAACACAGCAGAAGATTTGG+AGG | + | chr8.2:17843301-17843320 | None:intergenic | 45.0% | |
| GACGACTGCAAAAGATGTCA+TGG | - | chr8.2:17843224-17843243 | MS.gene51044:CDS | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.2:17843362-17843381 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8.2:17843180-17843199 | MS.gene51044:intron | 45.0% | |
| GTCTAAATATCTCTCTGGGC+TGG | - | chr8.2:17843125-17843144 | MS.gene51044:intron | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | + | chr8.2:17843172-17843191 | None:intergenic | 45.0% | |
| GTGATCAGCTGCAAGATTGA+GGG | - | chr8.2:17843035-17843054 | MS.gene51044:intron | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.2:17843351-17843370 | MS.gene51044:CDS | 45.0% | |
| TAAGCTGACATAGCCTGTTG+AGG | + | chr8.2:17842411-17842430 | None:intergenic | 45.0% | |
| TAGCACTCGGTAGAGAAACA+TGG | + | chr8.2:17842955-17842974 | None:intergenic | 45.0% | |
| TCTCAAGTGGCTATGAGAGA+AGG | - | chr8.2:17841605-17841624 | MS.gene51044:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.2:17843309-17843328 | MS.gene51044:CDS | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | - | chr8.2:17841740-17841759 | MS.gene51044:CDS | 45.0% | |
| TGTGATCAGCTGCAAGATTG+AGG | - | chr8.2:17843034-17843053 | MS.gene51044:intron | 45.0% | |
| TTCTATTCAATACCGGGCCT+TGG | - | chr8.2:17842050-17842069 | MS.gene51044:intron | 45.0% | |
| TTGCAAATTAAGCGAGCCGA+GGG | - | chr8.2:17843093-17843112 | MS.gene51044:intron | 45.0% | |
| TTGCTGGTCATCTCACTCTT+CGG | - | chr8.2:17841696-17841715 | MS.gene51044:CDS | 45.0% | |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | - | chr8.2:17841611-17841630 | MS.gene51044:CDS | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.2:17843362-17843381 | MS.gene51044:CDS | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.2:17843363-17843382 | MS.gene51044:CDS | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.2:17841638-17841657 | MS.gene51044:CDS | 45.0% |
| ATCAGCTGCAAGATTGAGGG+TGG | - | chr8.2:17843038-17843057 | MS.gene51044:intron | 50.0% | |
| CTTGCAAATTAAGCGAGCCG+AGG | - | chr8.2:17843092-17843111 | MS.gene51044:intron | 50.0% | |
| GCCAGATCAGCATGTGAAGA+CGG | - | chr8.2:17842470-17842489 | MS.gene51044:CDS | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.2:17843315-17843334 | MS.gene51044:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.2:17843112-17843131 | None:intergenic | 50.0% | |
| ! | ACATCTTTTGCAGTCGTCCC+TGG | + | chr8.2:17843222-17843241 | None:intergenic | 50.0% |
| AATTAAGCGAGCCGAGGGTG+AGG | - | chr8.2:17843098-17843117 | MS.gene51044:intron | 55.0% | |
| CAGCGTCAAGCCATTGTGGA+TGG | - | chr8.2:17843159-17843178 | MS.gene51044:intron | 55.0% | |
| CATCCACAATGGCTTGACGC+TGG | + | chr8.2:17843161-17843180 | None:intergenic | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.2:17841659-17841678 | None:intergenic | 55.0% | |
| GCCGTCTTCACATGCTGATC+TGG | + | chr8.2:17842474-17842493 | None:intergenic | 55.0% | |
| ATACCGGGCCTTGGCAGACA+AGG | - | chr8.2:17842059-17842078 | MS.gene51044:intron | 60.0% | |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.2:17843327-17843346 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.2:17841657-17841676 | MS.gene51044:CDS | 60.0% | |
| GAGGGTGGCAGCGAATGAGA+AGG | - | chr8.2:17843053-17843072 | MS.gene51044:intron | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.2:17843336-17843355 | None:intergenic | 60.0% | |
| TCGCCAGCGTCAAGCCATTG+TGG | - | chr8.2:17843155-17843174 | MS.gene51044:intron | 60.0% | |
| TTGCCTTGTCTGCCAAGGCC+CGG | + | chr8.2:17842065-17842084 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 17841569 | 17843407 | 17841569 | ID=MS.gene51044 |
| chr8.2 | mRNA | 17841569 | 17843407 | 17841569 | ID=MS.gene51044.t1;Parent=MS.gene51044 |
| chr8.2 | exon | 17843219 | 17843407 | 17843219 | ID=MS.gene51044.t1.exon1;Parent=MS.gene51044.t1 |
| chr8.2 | CDS | 17843219 | 17843407 | 17843219 | ID=cds.MS.gene51044.t1;Parent=MS.gene51044.t1 |
| chr8.2 | exon | 17842832 | 17842952 | 17842832 | ID=MS.gene51044.t1.exon2;Parent=MS.gene51044.t1 |
| chr8.2 | CDS | 17842832 | 17842952 | 17842832 | ID=cds.MS.gene51044.t1;Parent=MS.gene51044.t1 |
| chr8.2 | exon | 17842633 | 17842724 | 17842633 | ID=MS.gene51044.t1.exon3;Parent=MS.gene51044.t1 |
| chr8.2 | CDS | 17842633 | 17842724 | 17842633 | ID=cds.MS.gene51044.t1;Parent=MS.gene51044.t1 |
| chr8.2 | exon | 17842463 | 17842559 | 17842463 | ID=MS.gene51044.t1.exon4;Parent=MS.gene51044.t1 |
| chr8.2 | CDS | 17842463 | 17842559 | 17842463 | ID=cds.MS.gene51044.t1;Parent=MS.gene51044.t1 |
| chr8.2 | exon | 17841569 | 17841933 | 17841569 | ID=MS.gene51044.t1.exon5;Parent=MS.gene51044.t1 |
| chr8.2 | CDS | 17841569 | 17841933 | 17841569 | ID=cds.MS.gene51044.t1;Parent=MS.gene51044.t1 |
| Gene Sequence |
| Protein sequence |
