Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51045.t1 | RHN63602.1 | 99.3 | 284 | 2 | 0 | 1 | 284 | 6 | 289 | 2.10E-153 | 551.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51045.t1 | Q9FM19 | 88.7 | 282 | 32 | 0 | 1 | 282 | 1 | 282 | 2.3e-140 | 499.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51045.t1 | G7JPW1 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 1.5e-153 | 551.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51045 | MS.gene029948 | PPI |
| MS.gene51045 | MS.gene028857 | PPI |
| MS.gene51045 | MS.gene59292 | PPI |
| MS.gene51045 | MS.gene030984 | PPI |
| MS.gene51045 | MS.gene043467 | PPI |
| MS.gene51045 | MS.gene20481 | PPI |
| MS.gene31416 | MS.gene51045 | PPI |
| MS.gene51045 | MS.gene055768 | PPI |
| MS.gene51045 | MS.gene68929 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51045.t1 | MTR_4g107720 | 99.296 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 0.0 | 583 |
| MS.gene51045.t1 | MTR_4g107810 | 94.056 | 286 | 15 | 1 | 1 | 284 | 1 | 286 | 0.0 | 535 |
| MS.gene51045.t1 | MTR_4g107760 | 94.056 | 286 | 15 | 1 | 1 | 284 | 1 | 286 | 0.0 | 535 |
| MS.gene51045.t1 | MTR_4g107830 | 87.625 | 299 | 22 | 1 | 1 | 284 | 1 | 299 | 0.0 | 535 |
| MS.gene51045.t1 | MTR_4g107810 | 94.056 | 286 | 15 | 1 | 1 | 284 | 61 | 346 | 0.0 | 534 |
| MS.gene51045.t1 | MTR_4g107730 | 88.811 | 286 | 26 | 2 | 1 | 284 | 1 | 282 | 0.0 | 500 |
| MS.gene51045.t1 | MTR_6g011380 | 82.979 | 282 | 48 | 0 | 1 | 282 | 1 | 282 | 4.02e-177 | 490 |
| MS.gene51045.t1 | MTR_8g469160 | 79.433 | 282 | 58 | 0 | 1 | 282 | 1 | 282 | 6.02e-175 | 484 |
| MS.gene51045.t1 | MTR_6g460470 | 56.338 | 284 | 122 | 1 | 1 | 282 | 1 | 284 | 1.08e-114 | 332 |
| MS.gene51045.t1 | MTR_4g107700 | 95.181 | 83 | 4 | 0 | 202 | 284 | 6 | 88 | 3.01e-51 | 163 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51045.t1 | AT5G62740 | 88.652 | 282 | 32 | 0 | 1 | 282 | 1 | 282 | 0.0 | 528 |
| MS.gene51045.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 1.25e-170 | 473 |
| MS.gene51045.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 1.25e-170 | 473 |
| MS.gene51045.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 1.25e-170 | 473 |
| MS.gene51045.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 1.25e-170 | 473 |
| MS.gene51045.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 1.25e-170 | 473 |
| MS.gene51045.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 1.25e-170 | 473 |
| MS.gene51045.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 1.25e-170 | 473 |
| MS.gene51045.t1 | AT3G01290 | 77.385 | 283 | 64 | 0 | 1 | 283 | 1 | 283 | 5.78e-167 | 464 |
| MS.gene51045.t1 | AT5G51570 | 55.986 | 284 | 123 | 1 | 1 | 282 | 1 | 284 | 2.14e-118 | 341 |
Find 76 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTTTGAAAGAAAT+TGG | 0.117209 | 8.2:-17833674 | MS.gene51045:CDS |
| CTATTCTCATTGCAGTAATC+AGG | 0.273861 | 8.2:-17834522 | MS.gene51045:intron |
| GGAGAAGTCCATCGCGAATT+TGG | 0.274844 | 8.2:+17833585 | None:intergenic |
| CCATTGCATGCCATGGTTCC+TGG | 0.324425 | 8.2:-17835126 | MS.gene51045:CDS |
| TTGACACTTTGAAAGAAATT+GGG | 0.334978 | 8.2:-17833673 | MS.gene51045:CDS |
| GCGTCATCCAAGTAGAGTTT+TGG | 0.342771 | 8.2:+17834490 | None:intergenic |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.2:-17834346 | MS.gene51045:intron |
| CTCCCTTCGGCTACAACAAT+TGG | 0.345628 | 8.2:-17835081 | MS.gene51045:CDS |
| GTGGCTATGAGAGAAGGTTT+TGG | 0.407086 | 8.2:-17835179 | MS.gene51045:CDS |
| TTCCTGGGAAAACGGATTGC+CGG | 0.420365 | 8.2:-17835110 | MS.gene51045:CDS |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.2:-17833764 | MS.gene51045:CDS |
| AATTCGCGATGGACTTCTCC+AGG | 0.436039 | 8.2:-17833582 | MS.gene51045:CDS |
| TGCTAAAGATGTCATGGATA+TGG | 0.438467 | 8.2:-17833714 | MS.gene51045:CDS |
| GCCCGCTTCACATGCTCATC+GGG | 0.440215 | 8.2:+17834286 | None:intergenic |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8.2:-17833824 | MS.gene51045:CDS |
| TGCCATGGTTCCTGGGAAAA+CGG | 0.457814 | 8.2:-17835118 | MS.gene51045:CDS |
| AGCCCGCTTCACATGCTCAT+CGG | 0.481339 | 8.2:+17834285 | None:intergenic |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8.2:-17833897 | MS.gene51045:CDS |
| GCCCGATGAGCATGTGAAGC+GGG | 0.484110 | 8.2:-17834287 | MS.gene51045:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.2:-17834697 | MS.gene51045:CDS |
| CAGTGTTCCAAAACTCTACT+TGG | 0.493504 | 8.2:-17834497 | MS.gene51045:CDS |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8.2:+17835134 | None:intergenic |
| TATCCAATTGTTGTAGCCGA+AGG | 0.512577 | 8.2:+17835078 | None:intergenic |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8.2:-17833819 | MS.gene51045:CDS |
| AATGAACACAGCAGAAGACT+TGG | 0.514024 | 8.2:+17833643 | None:intergenic |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.517543 | 8.2:-17833906 | MS.gene51045:intron |
| CTTGGCAGACAAGGCTAATG+AGG | 0.518494 | 8.2:-17834679 | MS.gene51045:CDS |
| CATTGCATGCCATGGTTCCT+GGG | 0.523914 | 8.2:-17835125 | MS.gene51045:CDS |
| TATTCTCATTGCAGTAATCA+GGG | 0.525164 | 8.2:-17834521 | MS.gene51045:intron |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.2:-17833629 | MS.gene51045:CDS |
| TTTGAAGAAGTGCTTCAGCC+AGG | 0.529505 | 8.2:-17835152 | MS.gene51045:CDS |
| ACAGTAACAAACCTTTGTCT+TGG | 0.530913 | 8.2:+17835043 | None:intergenic |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.2:-17833785 | MS.gene51045:CDS |
| ATGAACACAGCAGAAGACTT+GGG | 0.535784 | 8.2:+17833644 | None:intergenic |
| ACATCTTTAGCACTTGTCCC+TGG | 0.540845 | 8.2:+17833725 | None:intergenic |
| TAGCCGAAGGGAGAGATGAC+CGG | 0.541932 | 8.2:+17835091 | None:intergenic |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8.2:-17833818 | MS.gene51045:CDS |
| GACAAGTGCTAAAGATGTCA+TGG | 0.545051 | 8.2:-17833720 | MS.gene51045:CDS |
| TGACACTTTGAAAGAAATTG+GGG | 0.551717 | 8.2:-17833672 | MS.gene51045:CDS |
| CTCATTAGCCTTGTCTGCCA+AGG | 0.555637 | 8.2:+17834680 | None:intergenic |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.2:+17833611 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.2:-17833635 | MS.gene51045:CDS |
| TTGCCGGTCATCTCTCCCTT+CGG | 0.567067 | 8.2:-17835094 | MS.gene51045:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8.2:-17833823 | MS.gene51045:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.570416 | 8.2:+17833835 | None:intergenic |
| AATAAAGCAAGCCGAGGGTG+AGG | 0.571303 | 8.2:-17833846 | MS.gene51045:CDS |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8.2:-17835133 | MS.gene51045:CDS |
| GAAGCTACTGATGAGAACCC+TGG | 0.574524 | 8.2:+17833564 | None:intergenic |
| ATCCAATTGTTGTAGCCGAA+GGG | 0.579325 | 8.2:+17835079 | None:intergenic |
| CCAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.2:+17835126 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.585634 | 8.2:-17834265 | MS.gene51045:intron |
| GTTGGCAGCTAAGGAGAAAG+CGG | 0.586849 | 8.2:-17833888 | MS.gene51045:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.2:-17834688 | MS.gene51045:CDS |
| TTTGATCAGCTGCAAGAATG+AGG | 0.600186 | 8.2:-17833910 | MS.gene51045:intron |
| TGAACACAGCAGAAGACTTG+GGG | 0.603200 | 8.2:+17833645 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.2:-17834455 | MS.gene51045:CDS |
| TCTACAGTGGCTATGAGAGA+AGG | 0.612018 | 8.2:-17835185 | MS.gene51045:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.621419 | 8.2:-17834437 | MS.gene51045:intron |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.2:-17834651 | MS.gene51045:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.2:+17834685 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.2:-17834653 | MS.gene51045:CDS |
| GGCAGCTAAGGAGAAAGCGG+AGG | 0.632411 | 8.2:-17833885 | MS.gene51045:CDS |
| AGCCCGATGAGCATGTGAAG+CGG | 0.638188 | 8.2:-17834288 | MS.gene51045:CDS |
| CTTGCAAATAAAGCAAGCCG+AGG | 0.638343 | 8.2:-17833852 | MS.gene51045:CDS |
| TCGCCAACGTCAAGCCATTG+TGG | 0.640251 | 8.2:-17833789 | MS.gene51045:CDS |
| GTTGCTAGCCAAATTCGCGA+TGG | 0.641354 | 8.2:-17833593 | MS.gene51045:CDS |
| CATCCACAATGGCTTGACGT+TGG | 0.649829 | 8.2:+17833786 | None:intergenic |
| ATTCGCGATGGACTTCTCCA+GGG | 0.652495 | 8.2:-17833581 | MS.gene51045:CDS |
| GTCTCTCAAACCATCCACAA+TGG | 0.664898 | 8.2:+17833775 | None:intergenic |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8.2:-17835054 | MS.gene51045:intron |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.2:+17833620 | None:intergenic |
| TTGCAAATAAAGCAAGCCGA+GGG | 0.684446 | 8.2:-17833851 | MS.gene51045:CDS |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.2:-17834652 | MS.gene51045:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.697140 | 8.2:+17833690 | None:intergenic |
| GCAAGTTGATCAATCTACAG+TGG | 0.699512 | 8.2:-17835198 | MS.gene51045:CDS |
| GAACACAGCAGAAGACTTGG+GGG | 0.700455 | 8.2:+17833646 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACGAATATTATTTATTGATA+TGG | - | chr8.2:17834387-17834406 | MS.gene51045:intron | 15.0% |
| !! | GGAAATAAAATTAATTACAA+AGG | + | chr8.2:17834621-17834640 | None:intergenic | 15.0% |
| !!! | ATTAATTTTATTTCCAAAAG+AGG | - | chr8.2:17834626-17834645 | MS.gene51045:CDS | 15.0% |
| !! | AATACTTAATAATAAGAACC+TGG | + | chr8.2:17834733-17834752 | None:intergenic | 20.0% |
| !! | ATAGATAAACATGTAATAAG+TGG | - | chr8.2:17834212-17834231 | MS.gene51045:intron | 20.0% |
| !! | TATGTATGTTATAGACTTAT+TGG | + | chr8.2:17833816-17833835 | None:intergenic | 20.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | + | chr8.2:17834164-17834183 | None:intergenic | 25.0% |
| ! | CATATAAAAACAATGTTGTG+AGG | + | chr8.2:17834575-17834594 | None:intergenic | 25.0% |
| ! | CCATAGTTAAGAAAACATAT+AGG | + | chr8.2:17833908-17833927 | None:intergenic | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | + | chr8.2:17834855-17834874 | None:intergenic | 25.0% |
| ! | TAACTTTGAATAATCTCAAC+AGG | - | chr8.2:17834427-17834446 | MS.gene51045:intron | 25.0% |
| ! | TTTACTATTTATTTGCTTGC+AGG | - | chr8.2:17834044-17834063 | MS.gene51045:intron | 25.0% |
| ! | TTTATTGATATGGTGAATTG+TGG | - | chr8.2:17834397-17834416 | MS.gene51045:intron | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | - | chr8.2:17834848-17834867 | MS.gene51045:intron | 25.0% |
| !! | CCTATATGTTTTCTTAACTA+TGG | - | chr8.2:17833905-17833924 | MS.gene51045:intron | 25.0% |
| !! | TAACATACATAACTTCGTTT+TGG | - | chr8.2:17833825-17833844 | MS.gene51045:CDS | 25.0% |
| !! | TTGACACTTTGAAAGAAATT+GGG | - | chr8.2:17835116-17835135 | MS.gene51045:CDS | 25.0% |
| !! | TTTGACACTTTGAAAGAAAT+TGG | - | chr8.2:17835115-17835134 | MS.gene51045:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.2:17834165-17834184 | MS.gene51045:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.2:17834334-17834353 | MS.gene51045:CDS | 30.0% | |
| AATCAAAATAACATAGCTCC+TGG | + | chr8.2:17833885-17833904 | None:intergenic | 30.0% | |
| ATAAGAAAATATGGCAATCC+AGG | + | chr8.2:17834846-17834865 | None:intergenic | 30.0% | |
| ATGGTTATCTCTTTCGTTAT+TGG | - | chr8.2:17833924-17833943 | MS.gene51045:intron | 30.0% | |
| ATGTTTATCTATTGCTAAGC+AGG | + | chr8.2:17834204-17834223 | None:intergenic | 30.0% | |
| GAAACATCGTAAATGATACA+AGG | + | chr8.2:17834787-17834806 | None:intergenic | 30.0% | |
| TATAGACTTATTGGTATGCA+TGG | + | chr8.2:17833807-17833826 | None:intergenic | 30.0% | |
| TATTCTCATTGCAGTAATCA+GGG | - | chr8.2:17834268-17834287 | MS.gene51045:CDS | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | - | chr8.2:17834137-17834156 | MS.gene51045:intron | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | - | chr8.2:17834136-17834155 | MS.gene51045:intron | 30.0% | |
| ! | AAACACTTATTGACCTCTTT+TGG | + | chr8.2:17834642-17834661 | None:intergenic | 30.0% |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.2:17835047-17835066 | MS.gene51045:intron | 30.0% |
| ! | TGACACTTTGAAAGAAATTG+GGG | - | chr8.2:17835117-17835136 | MS.gene51045:CDS | 30.0% |
| AAAATGTGAGACCAAGACAA+AGG | - | chr8.2:17833735-17833754 | MS.gene51045:CDS | 35.0% | |
| ACAGTAACAAACCTTTGTCT+TGG | + | chr8.2:17833749-17833768 | None:intergenic | 35.0% | |
| ATGATGTACCAAGAGGAAAA+GGG | + | chr8.2:17834673-17834692 | None:intergenic | 35.0% | |
| ATTTATATTAGGCGTCATCC+AGG | - | chr8.2:17833864-17833883 | MS.gene51045:CDS | 35.0% | |
| CCAAATATCTACTTTGTTCC+TGG | - | chr8.2:17834825-17834844 | MS.gene51045:intron | 35.0% | |
| CCAGGAACAAAGTAGATATT+TGG | + | chr8.2:17834828-17834847 | None:intergenic | 35.0% | |
| CTATTCTCATTGCAGTAATC+AGG | - | chr8.2:17834267-17834286 | MS.gene51045:CDS | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.2:17834966-17834985 | MS.gene51045:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | - | chr8.2:17834524-17834543 | MS.gene51045:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | - | chr8.2:17834138-17834157 | MS.gene51045:intron | 35.0% | |
| TATGATGTACCAAGAGGAAA+AGG | + | chr8.2:17834674-17834693 | None:intergenic | 35.0% | |
| TCGATTGAATTCATGCTGAT+TGG | - | chr8.2:17834020-17834039 | MS.gene51045:intron | 35.0% | |
| TCTATTGCTAAGCAGGTTTA+TGG | + | chr8.2:17834197-17834216 | None:intergenic | 35.0% | |
| TCTCTTTCGTTATTGGTATC+AGG | - | chr8.2:17833931-17833950 | MS.gene51045:intron | 35.0% | |
| TGCTAAAGATGTCATGGATA+TGG | - | chr8.2:17835075-17835094 | MS.gene51045:CDS | 35.0% | |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.2:17835046-17835065 | MS.gene51045:intron | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8.2:17834971-17834990 | MS.gene51045:intron | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | + | chr8.2:17835102-17835121 | None:intergenic | 35.0% |
| !!! | TACATAACTTCGTTTTGGCT+AGG | - | chr8.2:17833830-17833849 | MS.gene51045:CDS | 35.0% |
| AAGGGATACGTGTAATATCC+AGG | - | chr8.2:17834712-17834731 | MS.gene51045:CDS | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.2:17835149-17835168 | None:intergenic | 40.0% | |
| AATGTTGTGAGGACATCTCA+CGG | + | chr8.2:17834564-17834583 | None:intergenic | 40.0% | |
| ACATGCATGGACAACTATGA+AGG | - | chr8.2:17834693-17834712 | MS.gene51045:CDS | 40.0% | |
| ATCCAATTGTTGTAGCCGAA+GGG | + | chr8.2:17833713-17833732 | None:intergenic | 40.0% | |
| ATGAACACAGCAGAAGACTT+GGG | + | chr8.2:17835148-17835167 | None:intergenic | 40.0% | |
| CAGTGTTCCAAAACTCTACT+TGG | - | chr8.2:17834292-17834311 | MS.gene51045:CDS | 40.0% | |
| CATGCATGGACAACTATGAA+GGG | - | chr8.2:17834694-17834713 | MS.gene51045:CDS | 40.0% | |
| CATGGAATGACATGATGGTT+TGG | + | chr8.2:17833789-17833808 | None:intergenic | 40.0% | |
| CTTGGTACATCATACATGCA+TGG | - | chr8.2:17834680-17834699 | MS.gene51045:CDS | 40.0% | |
| GACAAGTGCTAAAGATGTCA+TGG | - | chr8.2:17835069-17835088 | MS.gene51045:CDS | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.2:17834965-17834984 | MS.gene51045:intron | 40.0% | |
| GTATGCATGGAATGACATGA+TGG | + | chr8.2:17833794-17833813 | None:intergenic | 40.0% | |
| TATCCAATTGTTGTAGCCGA+AGG | + | chr8.2:17833714-17833733 | None:intergenic | 40.0% | |
| TGCATGTATGATGTACCAAG+AGG | + | chr8.2:17834680-17834699 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.2:17834352-17834371 | MS.gene51045:intron | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.2:17834092-17834111 | MS.gene51045:intron | 40.0% | |
| TTGCAAATAAAGCAAGCCGA+GGG | - | chr8.2:17834938-17834957 | MS.gene51045:intron | 40.0% | |
| TTTGATCAGCTGCAAGAATG+AGG | - | chr8.2:17834879-17834898 | MS.gene51045:intron | 40.0% | |
| ! | AAAACCTACCCTTTTCCTCT+TGG | - | chr8.2:17834662-17834681 | MS.gene51045:CDS | 40.0% |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8.2:17834970-17834989 | MS.gene51045:intron | 40.0% |
| !! | GCAAGTTGATCAATCTACAG+TGG | - | chr8.2:17833591-17833610 | MS.gene51045:CDS | 40.0% |
| !!! | CAAGTAGAGTTTTGGAACAC+TGG | + | chr8.2:17834294-17834313 | None:intergenic | 40.0% |
| AAGAATGAGGTTGGCAGCTA+AGG | - | chr8.2:17834892-17834911 | MS.gene51045:intron | 45.0% | |
| ACATCTTTAGCACTTGTCCC+TGG | + | chr8.2:17835067-17835086 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | - | chr8.2:17834883-17834902 | MS.gene51045:intron | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.2:17834443-17834462 | MS.gene51045:CDS | 45.0% | |
| CTTGCAAATAAAGCAAGCCG+AGG | - | chr8.2:17834937-17834956 | MS.gene51045:intron | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8.2:17835025-17835044 | MS.gene51045:intron | 45.0% | |
| GTCTCTCAAACCATCCACAA+TGG | + | chr8.2:17835017-17835036 | None:intergenic | 45.0% | |
| TCTACAGTGGCTATGAGAGA+AGG | - | chr8.2:17833604-17833623 | MS.gene51045:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.2:17835154-17835173 | MS.gene51045:CDS | 45.0% | |
| TGAACACAGCAGAAGACTTG+GGG | + | chr8.2:17835147-17835166 | None:intergenic | 45.0% | |
| TGTACCAAGAGGAAAAGGGT+AGG | + | chr8.2:17834669-17834688 | None:intergenic | 45.0% | |
| ! | GCGTCATCCAAGTAGAGTTT+TGG | + | chr8.2:17834302-17834321 | None:intergenic | 45.0% |
| ! | GTGGCTATGAGAGAAGGTTT+TGG | - | chr8.2:17833610-17833629 | MS.gene51045:CDS | 45.0% |
| !! | TTTGAAGAAGTGCTTCAGCC+AGG | - | chr8.2:17833637-17833656 | MS.gene51045:CDS | 45.0% |
| !!! | ATTTTATTTTCATTTATATT+AGG | - | chr8.2:17833853-17833872 | MS.gene51045:CDS | 5.0% |
| AATAAAGCAAGCCGAGGGTG+AGG | - | chr8.2:17834943-17834962 | MS.gene51045:intron | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | - | chr8.2:17835004-17835023 | MS.gene51045:intron | 50.0% | |
| CATCCACAATGGCTTGACGT+TGG | + | chr8.2:17835006-17835025 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+GGG | - | chr8.2:17833664-17833683 | MS.gene51045:CDS | 50.0% | |
| CTCCCTTCGGCTACAACAAT+TGG | - | chr8.2:17833708-17833727 | MS.gene51045:CDS | 50.0% | |
| CTTGGCAGACAAGGCTAATG+AGG | - | chr8.2:17834110-17834129 | MS.gene51045:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+GGG | + | chr8.2:17835146-17835165 | None:intergenic | 50.0% | |
| GGAGAAGTCCATCGCGAATT+TGG | + | chr8.2:17835207-17835226 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.2:17835160-17835179 | MS.gene51045:CDS | 50.0% | |
| GTTGCTAGCCAAATTCGCGA+TGG | - | chr8.2:17835196-17835215 | MS.gene51045:CDS | 50.0% | |
| GTTGGCAGCTAAGGAGAAAG+CGG | - | chr8.2:17834901-17834920 | MS.gene51045:intron | 50.0% | |
| TGCCATGGTTCCTGGGAAAA+CGG | - | chr8.2:17833671-17833690 | MS.gene51045:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.2:17834957-17834976 | None:intergenic | 50.0% | |
| ! | AATTCGCGATGGACTTCTCC+AGG | - | chr8.2:17835207-17835226 | MS.gene51045:CDS | 50.0% |
| ! | ATCCGTTTTCCCAGGAACCA+TGG | + | chr8.2:17833676-17833695 | None:intergenic | 50.0% |
| ! | ATTCGCGATGGACTTCTCCA+GGG | - | chr8.2:17835208-17835227 | MS.gene51045:CDS | 50.0% |
| !! | CTCATTAGCCTTGTCTGCCA+AGG | + | chr8.2:17834112-17834131 | None:intergenic | 50.0% |
| !! | TTCCTGGGAAAACGGATTGC+CGG | - | chr8.2:17833679-17833698 | MS.gene51045:CDS | 50.0% |
| AGCCCGATGAGCATGTGAAG+CGG | - | chr8.2:17834501-17834520 | MS.gene51045:CDS | 55.0% | |
| AGCCCGCTTCACATGCTCAT+CGG | + | chr8.2:17834507-17834526 | None:intergenic | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8.2:17834101-17834120 | MS.gene51045:intron | 55.0% | |
| CAGGATGCCATTGCATGCCA+TGG | - | chr8.2:17833656-17833675 | MS.gene51045:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+TGG | + | chr8.2:17833658-17833677 | None:intergenic | 55.0% | |
| CCAGGAACCATGGCATGCAA+TGG | + | chr8.2:17833666-17833685 | None:intergenic | 55.0% | |
| CCATTGCATGCCATGGTTCC+TGG | - | chr8.2:17833663-17833682 | MS.gene51045:CDS | 55.0% | |
| TAGCCGAAGGGAGAGATGAC+CGG | + | chr8.2:17833701-17833720 | None:intergenic | 55.0% | |
| TCGCCAACGTCAAGCCATTG+TGG | - | chr8.2:17835000-17835019 | MS.gene51045:intron | 55.0% | |
| TTGCCGGTCATCTCTCCCTT+CGG | - | chr8.2:17833695-17833714 | MS.gene51045:CDS | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8.2:17834107-17834126 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.2:17835172-17835191 | None:intergenic | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.2:17835181-17835200 | None:intergenic | 60.0% | |
| GCCCGATGAGCATGTGAAGC+GGG | - | chr8.2:17834502-17834521 | MS.gene51045:CDS | 60.0% | |
| GCCCGCTTCACATGCTCATC+GGG | + | chr8.2:17834506-17834525 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAAGCGG+AGG | - | chr8.2:17834904-17834923 | MS.gene51045:intron | 60.0% | |
| ! | GACCGGCAATCCGTTTTCCC+AGG | + | chr8.2:17833684-17833703 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 17833568 | 17835243 | 17833568 | ID=MS.gene51045 |
| chr8.2 | mRNA | 17833568 | 17835243 | 17833568 | ID=MS.gene51045.t1;Parent=MS.gene51045 |
| chr8.2 | exon | 17835055 | 17835243 | 17835055 | ID=MS.gene51045.t1.exon1;Parent=MS.gene51045.t1 |
| chr8.2 | CDS | 17835055 | 17835243 | 17835055 | ID=cds.MS.gene51045.t1;Parent=MS.gene51045.t1 |
| chr8.2 | exon | 17834625 | 17834745 | 17834625 | ID=MS.gene51045.t1.exon2;Parent=MS.gene51045.t1 |
| chr8.2 | CDS | 17834625 | 17834745 | 17834625 | ID=cds.MS.gene51045.t1;Parent=MS.gene51045.t1 |
| chr8.2 | exon | 17834438 | 17834529 | 17834438 | ID=MS.gene51045.t1.exon3;Parent=MS.gene51045.t1 |
| chr8.2 | CDS | 17834438 | 17834529 | 17834438 | ID=cds.MS.gene51045.t1;Parent=MS.gene51045.t1 |
| chr8.2 | exon | 17834266 | 17834362 | 17834266 | ID=MS.gene51045.t1.exon4;Parent=MS.gene51045.t1 |
| chr8.2 | CDS | 17834266 | 17834362 | 17834266 | ID=cds.MS.gene51045.t1;Parent=MS.gene51045.t1 |
| chr8.2 | exon | 17833568 | 17833923 | 17833568 | ID=MS.gene51045.t1.exon5;Parent=MS.gene51045.t1 |
| chr8.2 | CDS | 17833568 | 17833923 | 17833568 | ID=cds.MS.gene51045.t1;Parent=MS.gene51045.t1 |
| Gene Sequence |
| Protein sequence |
