Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51046.t1 | ACJ85369.1 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 5.60E-154 | 553.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51046.t1 | Q6L4S3 | 87.2 | 281 | 36 | 0 | 1 | 281 | 1 | 281 | 4.0e-140 | 498.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51046.t1 | B7FKT5 | 99.3 | 284 | 2 | 0 | 1 | 284 | 1 | 284 | 4.1e-154 | 553.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59292 | MS.gene51046 | PPI |
| MS.gene68929 | MS.gene51046 | PPI |
| MS.gene055768 | MS.gene51046 | PPI |
| MS.gene31416 | MS.gene51046 | PPI |
| MS.gene043467 | MS.gene51046 | PPI |
| MS.gene029948 | MS.gene51046 | PPI |
| MS.gene20481 | MS.gene51046 | PPI |
| MS.gene030984 | MS.gene51046 | PPI |
| MS.gene51046 | MS.gene028857 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51046.t1 | MTR_4g107720 | 93.662 | 284 | 18 | 0 | 1 | 284 | 1 | 284 | 0.0 | 536 |
| MS.gene51046.t1 | MTR_4g107810 | 93.617 | 282 | 18 | 0 | 1 | 282 | 1 | 282 | 0.0 | 533 |
| MS.gene51046.t1 | MTR_4g107760 | 93.617 | 282 | 18 | 0 | 1 | 282 | 1 | 282 | 0.0 | 533 |
| MS.gene51046.t1 | MTR_4g107830 | 86.622 | 299 | 25 | 1 | 1 | 284 | 1 | 299 | 0.0 | 531 |
| MS.gene51046.t1 | MTR_4g107810 | 93.617 | 282 | 18 | 0 | 1 | 282 | 61 | 342 | 0.0 | 531 |
| MS.gene51046.t1 | MTR_4g107730 | 93.310 | 284 | 17 | 1 | 1 | 284 | 1 | 282 | 0.0 | 519 |
| MS.gene51046.t1 | MTR_6g011380 | 82.270 | 282 | 50 | 0 | 1 | 282 | 1 | 282 | 1.20e-176 | 488 |
| MS.gene51046.t1 | MTR_8g469160 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 9.85e-174 | 481 |
| MS.gene51046.t1 | MTR_6g460470 | 58.803 | 284 | 115 | 1 | 1 | 282 | 1 | 284 | 5.86e-119 | 343 |
| MS.gene51046.t1 | MTR_4g107700 | 92.771 | 83 | 6 | 0 | 202 | 284 | 6 | 88 | 3.24e-50 | 160 |
| MS.gene51046.t1 | MTR_6g060500 | 50.769 | 65 | 19 | 1 | 161 | 212 | 1 | 65 | 7.68e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51046.t1 | AT5G62740 | 87.943 | 282 | 34 | 0 | 1 | 282 | 1 | 282 | 0.0 | 524 |
| MS.gene51046.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene51046.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene51046.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene51046.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene51046.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene51046.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene51046.t1 | AT1G69840 | 82.624 | 282 | 49 | 0 | 1 | 282 | 1 | 282 | 3.41e-172 | 477 |
| MS.gene51046.t1 | AT3G01290 | 77.739 | 283 | 63 | 0 | 1 | 283 | 1 | 283 | 7.62e-169 | 469 |
| MS.gene51046.t1 | AT5G51570 | 58.099 | 284 | 117 | 1 | 1 | 282 | 1 | 284 | 1.08e-121 | 350 |
Find 61 sgRNAs with CRISPR-Local
Find 115 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.235356 | 8.2:+17828807 | MS.gene51046:CDS |
| GGAGAAGTCCGTCACGAATT+TGG | 0.259803 | 8.2:-17828896 | None:intergenic |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.2:+17827280 | MS.gene51046:CDS |
| AATGAACACAGCAGAAGATT+TGG | 0.365320 | 8.2:-17828838 | None:intergenic |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.2:+17827349 | MS.gene51046:CDS |
| TGCAAAAGATGTCATGGATT+TGG | 0.389648 | 8.2:+17828767 | MS.gene51046:CDS |
| GTATCATCCAAGTTGAGCTT+TGG | 0.393932 | 8.2:-17827971 | None:intergenic |
| GCCCGTTTCACATGCTCGTC+TGG | 0.399568 | 8.2:-17828181 | None:intergenic |
| AATTCGTGACGGACTTCTCC+AGG | 0.405210 | 8.2:+17828899 | MS.gene51046:CDS |
| GGTTTGAGAAACAGTGTGAT+TGG | 0.406441 | 8.2:+17828717 | MS.gene51046:CDS |
| GCCAGACGAGCATGTGAAAC+GGG | 0.414388 | 8.2:+17828180 | MS.gene51046:CDS |
| GAACAGGCTATGTCAGCATA+TGG | 0.456835 | 8.2:+17828121 | MS.gene51046:intron |
| AAGTTTGTAAAACGCATCAT+TGG | 0.460677 | 8.2:-17827785 | None:intergenic |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.2:+17827334 | MS.gene51046:CDS |
| CTCTCTTCGGCTACAACAGT+TGG | 0.475891 | 8.2:+17827378 | MS.gene51046:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.2:+17827753 | MS.gene51046:CDS |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.493263 | 8.2:+17827365 | MS.gene51046:CDS |
| TTTGAAGAGGTGCTTCAGCC+AGG | 0.501147 | 8.2:+17827307 | MS.gene51046:CDS |
| CATGGCATGCAATGGCATCC+TGG | 0.506841 | 8.2:-17827325 | None:intergenic |
| AGCCAGACGAGCATGTGAAA+CGG | 0.508785 | 8.2:+17828179 | MS.gene51046:CDS |
| CTGAGTCTAAATATCTCCAT+GGG | 0.528009 | 8.2:+17828658 | MS.gene51046:CDS |
| TCTACAGTGGCTATGAAAGA+AGG | 0.529221 | 8.2:+17827274 | MS.gene51046:CDS |
| AGTAAAGCGAGCCGAGGGTG+AGG | 0.530224 | 8.2:+17828635 | MS.gene51046:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.533502 | 8.2:+17828696 | MS.gene51046:CDS |
| ATCATTGGCGTTGTCTGCCA+AGG | 0.539081 | 8.2:-17827770 | None:intergenic |
| GACAAGTGCAAAAGATGTCA+TGG | 0.548649 | 8.2:+17828761 | MS.gene51046:CDS |
| GTGTTCATTCCACACGGACC+TGG | 0.552060 | 8.2:+17828852 | MS.gene51046:CDS |
| ACTACATCGCGAACAGCACC+AGG | 0.554557 | 8.2:-17828870 | None:intergenic |
| GTCTAAATATCTCCATGGGG+TGG | 0.557451 | 8.2:+17828662 | MS.gene51046:CDS |
| GAACACAGCAGAAGATTTGG+AGG | 0.567527 | 8.2:-17828835 | None:intergenic |
| AGTGGAAGAAGAACTTGAGA+AGG | 0.570489 | 8.2:+17828024 | MS.gene51046:CDS |
| CAGGATGCCATTGCATGCCA+TGG | 0.571416 | 8.2:+17827326 | MS.gene51046:CDS |
| TAACAAACGAACCTTTGTCT+TGG | 0.574288 | 8.2:-17827416 | None:intergenic |
| TCTAAATATCTCCATGGGGT+GGG | 0.579878 | 8.2:+17828663 | MS.gene51046:CDS |
| GCTGAGTCTAAATATCTCCA+TGG | 0.580913 | 8.2:+17828657 | MS.gene51046:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.2:-17827333 | None:intergenic |
| ATATGTTCCAAAGCTCAACT+TGG | 0.583632 | 8.2:+17827964 | MS.gene51046:CDS |
| AAATGAAATCGCAAAAGCAG+TGG | 0.586140 | 8.2:+17828006 | MS.gene51046:CDS |
| GAGAGTGGCAGCTAACGAAA+AGG | 0.587274 | 8.2:+17828590 | MS.gene51046:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.2:-17828646 | None:intergenic |
| GGCAGCTAACGAAAAGGCGG+AGG | 0.599752 | 8.2:+17828596 | MS.gene51046:CDS |
| TGGCGTTGTCTGCCAAGGCA+CGG | 0.603453 | 8.2:-17827765 | None:intergenic |
| GAAGCTACTCATGAGAACCC+TGG | 0.616440 | 8.2:-17828917 | None:intergenic |
| ATTCGTGACGGACTTCTCCA+GGG | 0.627782 | 8.2:+17828900 | MS.gene51046:CDS |
| ATCAGCTGCAAGAATGAGAG+TGG | 0.628496 | 8.2:+17828575 | MS.gene51046:intron |
| GCTATGAATGAAATCAATGC+CGG | 0.629714 | 8.2:+17828202 | MS.gene51046:CDS |
| CACAGCAGAAGATTTGGAGG+CGG | 0.636213 | 8.2:-17828832 | None:intergenic |
| CTTGCAAGTAAAGCGAGCCG+AGG | 0.639259 | 8.2:+17828629 | MS.gene51046:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.2:+17828692 | MS.gene51046:CDS |
| TTGCAAGTAAAGCGAGCCGA+GGG | 0.652348 | 8.2:+17828630 | MS.gene51046:CDS |
| TCTGCTGTGTTCATTCCACA+CGG | 0.654464 | 8.2:+17828846 | MS.gene51046:CDS |
| GACGAGCAATACCCACCCCA+TGG | 0.656560 | 8.2:-17828674 | None:intergenic |
| TTTACAAACTTAGCAACACA+AGG | 0.662587 | 8.2:+17827797 | MS.gene51046:CDS |
| AAAATGTGAGACCAAGACAA+AGG | 0.665463 | 8.2:+17827405 | MS.gene51046:CDS |
| GTTTCTCAAACCATCCACAA+TGG | 0.673360 | 8.2:-17828706 | None:intergenic |
| CGAACAGCACCAGGTCCGTG+TGG | 0.676751 | 8.2:-17828861 | None:intergenic |
| AGTGGCAGCTAACGAAAAGG+CGG | 0.677436 | 8.2:+17828593 | MS.gene51046:CDS |
| GTAGTAAGCCAAATTCGTGA+CGG | 0.698713 | 8.2:+17828888 | MS.gene51046:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.2:-17828791 | None:intergenic |
| GCAAGTTGATCAATCTACAG+TGG | 0.715524 | 8.2:+17827261 | MS.gene51046:CDS |
| TGAGTCTAAATATCTCCATG+GGG | 0.748301 | 8.2:+17828659 | MS.gene51046:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATATTTTTTAATTTTCATT+AGG | + | chr8.2:17827518-17827537 | MS.gene51046:intron | 10.0% |
| !! | AATATTTAAATTATCAGCTA+AGG | + | chr8.2:17827909-17827928 | MS.gene51046:intron | 15.0% |
| !! | ACAATTAGCATTTATTGATA+TGG | + | chr8.2:17828065-17828084 | MS.gene51046:intron | 20.0% |
| !! | ATTAATTCATTGGAAAAACA+TGG | - | chr8.2:17827676-17827695 | None:intergenic | 20.0% |
| !! | GAACAAAATAGATAGATATT+TGG | - | chr8.2:17828516-17828535 | None:intergenic | 20.0% |
| !!! | ATATCTATCTATTTTGTTCT+TGG | + | chr8.2:17828517-17828536 | MS.gene51046:intron | 20.0% |
| !!! | TACATATAGAGTATTGAAAA+TGG | - | chr8.2:17827624-17827643 | None:intergenic | 20.0% |
| ! | AAAAACATAAGCTTGAATCT+GGG | - | chr8.2:17827824-17827843 | None:intergenic | 25.0% |
| ! | AACATGTCATAACTAATAAG+TGG | + | chr8.2:17827880-17827899 | MS.gene51046:intron | 25.0% |
| ! | ACCAATCAACATTAATTCAT+TGG | - | chr8.2:17827686-17827705 | None:intergenic | 25.0% |
| ! | ATCATAACATGACTATCTAT+TGG | - | chr8.2:17828419-17828438 | None:intergenic | 25.0% |
| ! | GAAACCAGTATAAGAAAATA+TGG | - | chr8.2:17828547-17828566 | None:intergenic | 25.0% |
| ! | TCAGATAATTACAATACTGT+GGG | - | chr8.2:17828255-17828274 | None:intergenic | 25.0% |
| ! | TCCAATGAATTAATGTTGAT+TGG | + | chr8.2:17827682-17827701 | MS.gene51046:intron | 25.0% |
| ! | TTCAGATAATTACAATACTG+TGG | - | chr8.2:17828256-17828275 | None:intergenic | 25.0% |
| ! | TTCTGTTGCAAAAATGATTT+AGG | + | chr8.2:17828359-17828378 | MS.gene51046:intron | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | + | chr8.2:17828807-17828826 | MS.gene51046:CDS | 25.0% |
| ! | TTTGCAACAGAATTAGATTT+AGG | - | chr8.2:17828351-17828370 | None:intergenic | 25.0% |
| !! | ATTGCCATATTTTCTTATAC+TGG | + | chr8.2:17828540-17828559 | MS.gene51046:intron | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | + | chr8.2:17827826-17827845 | MS.gene51046:CDS | 25.0% |
| AAGTTTGTAAAACGCATCAT+TGG | - | chr8.2:17827788-17827807 | None:intergenic | 30.0% | |
| AATGATTTAGGCATTTCCTT+TGG | + | chr8.2:17828371-17828390 | MS.gene51046:intron | 30.0% | |
| AATGTACAGTGTATCATGTT+AGG | - | chr8.2:17827649-17827668 | None:intergenic | 30.0% | |
| ACTGAGGATTTATGTAACTT+TGG | + | chr8.2:17828091-17828110 | MS.gene51046:intron | 30.0% | |
| AGGATTTATGTAACTTTGGA+TGG | + | chr8.2:17828095-17828114 | MS.gene51046:intron | 30.0% | |
| ATGATTTAGGCATTTCCTTT+GGG | + | chr8.2:17828372-17828391 | MS.gene51046:intron | 30.0% | |
| ATGTTTATGTATTGCTAAGC+AGG | - | chr8.2:17827865-17827884 | None:intergenic | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | - | chr8.2:17827825-17827844 | None:intergenic | 30.0% | |
| CAGATAATTACAATACTGTG+GGG | - | chr8.2:17828254-17828273 | None:intergenic | 30.0% | |
| CTGAATTACACATGTATGTA+TGG | + | chr8.2:17828271-17828290 | MS.gene51046:intron | 30.0% | |
| GTATGTATGGAAAACTATGT+GGG | + | chr8.2:17828284-17828303 | MS.gene51046:intron | 30.0% | |
| TATGTATGGAAAACTATGTG+GGG | + | chr8.2:17828285-17828304 | MS.gene51046:intron | 30.0% | |
| TGAATACTTTCTCTTTGACT+AGG | + | chr8.2:17827496-17827515 | MS.gene51046:intron | 30.0% | |
| TGTATGTATGGAAAACTATG+TGG | + | chr8.2:17828283-17828302 | MS.gene51046:intron | 30.0% | |
| TGTTTATGTATTGCTAAGCA+GGG | - | chr8.2:17827864-17827883 | None:intergenic | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | + | chr8.2:17827797-17827816 | MS.gene51046:CDS | 30.0% | |
| TTTATTGATATGGTGAACTG+AGG | + | chr8.2:17828075-17828094 | MS.gene51046:intron | 30.0% | |
| ! | ATGGTCTTACAAAAACATAC+CGG | - | chr8.2:17828224-17828243 | None:intergenic | 30.0% |
| ! | GATTTTCAGTTAATGTACCA+GGG | + | chr8.2:17828739-17828758 | MS.gene51046:CDS | 30.0% |
| !! | ATTTTCATTAGGTGTCATCA+CGG | + | chr8.2:17827529-17827548 | MS.gene51046:intron | 30.0% |
| !!! | AGGTTTTGGAAAATTTGAAG+AGG | + | chr8.2:17827294-17827313 | MS.gene51046:CDS | 30.0% |
| AAAATGTGAGACCAAGACAA+AGG | + | chr8.2:17827405-17827424 | MS.gene51046:CDS | 35.0% | |
| AAATGAAATCGCAAAAGCAG+TGG | + | chr8.2:17828006-17828025 | MS.gene51046:CDS | 35.0% | |
| AATGAACACAGCAGAAGATT+TGG | - | chr8.2:17828841-17828860 | None:intergenic | 35.0% | |
| ATATGTTCCAAAGCTCAACT+TGG | + | chr8.2:17827964-17827983 | MS.gene51046:CDS | 35.0% | |
| CATAGTTAATGCGAACATAC+AGG | - | chr8.2:17827571-17827590 | None:intergenic | 35.0% | |
| CATGAAATGACGTGAAGATT+TGG | - | chr8.2:17827463-17827482 | None:intergenic | 35.0% | |
| CTGAGTCTAAATATCTCCAT+GGG | + | chr8.2:17828658-17828677 | MS.gene51046:CDS | 35.0% | |
| CTGTATGTTCGCATTAACTA+TGG | + | chr8.2:17827569-17827588 | MS.gene51046:intron | 35.0% | |
| CTTTCACTAGTATATCGATC+AGG | + | chr8.2:17827598-17827617 | MS.gene51046:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+CGG | + | chr8.2:17828202-17828221 | MS.gene51046:CDS | 35.0% | |
| TAACAAACGAACCTTTGTCT+TGG | - | chr8.2:17827419-17827438 | None:intergenic | 35.0% | |
| TGAGTCTAAATATCTCCATG+GGG | + | chr8.2:17828659-17828678 | MS.gene51046:CDS | 35.0% | |
| TGCAAAAGATGTCATGGATT+TGG | + | chr8.2:17828767-17828786 | MS.gene51046:CDS | 35.0% | |
| ! | GGATTTTCAGTTAATGTACC+AGG | + | chr8.2:17828738-17828757 | MS.gene51046:CDS | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | - | chr8.2:17828794-17828813 | None:intergenic | 35.0% |
| AAAGAAGCAAAGCAACCCAA+AGG | - | chr8.2:17828390-17828409 | None:intergenic | 40.0% | |
| AAGCACTCGATAGACAAACA+TGG | - | chr8.2:17828489-17828508 | None:intergenic | 40.0% | |
| AGTGGAAGAAGAACTTGAGA+AGG | + | chr8.2:17828024-17828043 | MS.gene51046:CDS | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | + | chr8.2:17828761-17828780 | MS.gene51046:CDS | 40.0% | |
| GCTGAGTCTAAATATCTCCA+TGG | + | chr8.2:17828657-17828676 | MS.gene51046:CDS | 40.0% | |
| GGTTTGAGAAACAGTGTGAT+TGG | + | chr8.2:17828717-17828736 | MS.gene51046:CDS | 40.0% | |
| GTAGTAAGCCAAATTCGTGA+CGG | + | chr8.2:17828888-17828907 | MS.gene51046:CDS | 40.0% | |
| GTTTCTCAAACCATCCACAA+TGG | - | chr8.2:17828709-17828728 | None:intergenic | 40.0% | |
| TAACTTTGGATGGTCTGAAC+AGG | + | chr8.2:17828105-17828124 | MS.gene51046:intron | 40.0% | |
| TCTAAATATCTCCATGGGGT+GGG | + | chr8.2:17828663-17828682 | MS.gene51046:CDS | 40.0% | |
| TCTACAGTGGCTATGAAAGA+AGG | + | chr8.2:17827274-17827293 | MS.gene51046:CDS | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | + | chr8.2:17827349-17827368 | MS.gene51046:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | + | chr8.2:17827753-17827772 | MS.gene51046:CDS | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | - | chr8.2:17827346-17827365 | None:intergenic | 40.0% |
| ! | GTATCATCCAAGTTGAGCTT+TGG | - | chr8.2:17827974-17827993 | None:intergenic | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | + | chr8.2:17827280-17827299 | MS.gene51046:CDS | 40.0% |
| ! | TTGGGTTGCTTTGCTTCTTT+GGG | + | chr8.2:17828390-17828409 | MS.gene51046:intron | 40.0% |
| !! | GCAAGTTGATCAATCTACAG+TGG | + | chr8.2:17827261-17827280 | MS.gene51046:CDS | 40.0% |
| !! | TTTGGGTTGCTTTGCTTCTT+TGG | + | chr8.2:17828389-17828408 | MS.gene51046:intron | 40.0% |
| AATACTGTGGGGACATCTCA+TGG | - | chr8.2:17828243-17828262 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGAG+TGG | + | chr8.2:17828575-17828594 | MS.gene51046:intron | 45.0% | |
| GAACACAGCAGAAGATTTGG+AGG | - | chr8.2:17828838-17828857 | None:intergenic | 45.0% | |
| GAACAGGCTATGTCAGCATA+TGG | + | chr8.2:17828121-17828140 | MS.gene51046:intron | 45.0% | |
| GTCTAAATATCTCCATGGGG+TGG | + | chr8.2:17828662-17828681 | MS.gene51046:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+CGG | + | chr8.2:17828846-17828865 | MS.gene51046:CDS | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | + | chr8.2:17827365-17827384 | MS.gene51046:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | - | chr8.2:17828759-17828778 | None:intergenic | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | - | chr8.2:17827354-17827373 | None:intergenic | 45.0% |
| ! | TGGGTTGCTTTGCTTCTTTG+GGG | + | chr8.2:17828391-17828410 | MS.gene51046:intron | 45.0% |
| !!! | TTTAATATTTATTTTCTTTT+AGG | + | chr8.2:17827705-17827724 | MS.gene51046:intron | 5.0% |
| AGCCAGACGAGCATGTGAAA+CGG | + | chr8.2:17828179-17828198 | MS.gene51046:CDS | 50.0% | |
| AGTGGCAGCTAACGAAAAGG+CGG | + | chr8.2:17828593-17828612 | MS.gene51046:CDS | 50.0% | |
| ATCATTGGCGTTGTCTGCCA+AGG | - | chr8.2:17827773-17827792 | None:intergenic | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | + | chr8.2:17828696-17828715 | MS.gene51046:CDS | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | - | chr8.2:17827336-17827355 | None:intergenic | 50.0% | |
| CACAGCAGAAGATTTGGAGG+CGG | - | chr8.2:17828835-17828854 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | + | chr8.2:17827334-17827353 | MS.gene51046:CDS | 50.0% | |
| CTCTCTTCGGCTACAACAGT+TGG | + | chr8.2:17827378-17827397 | MS.gene51046:CDS | 50.0% | |
| GAGAGTGGCAGCTAACGAAA+AGG | + | chr8.2:17828590-17828609 | MS.gene51046:CDS | 50.0% | |
| GGAGAAGTCCGTCACGAATT+TGG | - | chr8.2:17828899-17828918 | None:intergenic | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | + | chr8.2:17828692-17828711 | MS.gene51046:CDS | 50.0% | |
| TTGCAAGTAAAGCGAGCCGA+GGG | + | chr8.2:17828630-17828649 | MS.gene51046:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | - | chr8.2:17828649-17828668 | None:intergenic | 50.0% | |
| ! | GGGTTGCTTTGCTTCTTTGG+GGG | + | chr8.2:17828392-17828411 | MS.gene51046:intron | 50.0% |
| !! | AATTCGTGACGGACTTCTCC+AGG | + | chr8.2:17828899-17828918 | MS.gene51046:CDS | 50.0% |
| !! | ATTCGTGACGGACTTCTCCA+GGG | + | chr8.2:17828900-17828919 | MS.gene51046:CDS | 50.0% |
| !! | TTTGAAGAGGTGCTTCAGCC+AGG | + | chr8.2:17827307-17827326 | MS.gene51046:CDS | 50.0% |
| ACTACATCGCGAACAGCACC+AGG | - | chr8.2:17828873-17828892 | None:intergenic | 55.0% | |
| CAGGATGCCATTGCATGCCA+TGG | + | chr8.2:17827326-17827345 | MS.gene51046:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+TGG | - | chr8.2:17827328-17827347 | None:intergenic | 55.0% | |
| CTTGCAAGTAAAGCGAGCCG+AGG | + | chr8.2:17828629-17828648 | MS.gene51046:CDS | 55.0% | |
| GCCAGACGAGCATGTGAAAC+GGG | + | chr8.2:17828180-17828199 | MS.gene51046:CDS | 55.0% | |
| GTGTTCATTCCACACGGACC+TGG | + | chr8.2:17828852-17828871 | MS.gene51046:CDS | 55.0% | |
| AGTAAAGCGAGCCGAGGGTG+AGG | + | chr8.2:17828635-17828654 | MS.gene51046:CDS | 60.0% | |
| GACGAGCAATACCCACCCCA+TGG | - | chr8.2:17828677-17828696 | None:intergenic | 60.0% | |
| GCCCGTTTCACATGCTCGTC+TGG | - | chr8.2:17828184-17828203 | None:intergenic | 60.0% | |
| GGCAGCTAACGAAAAGGCGG+AGG | + | chr8.2:17828596-17828615 | MS.gene51046:CDS | 60.0% | |
| TGGCGTTGTCTGCCAAGGCA+CGG | - | chr8.2:17827768-17827787 | None:intergenic | 60.0% | |
| CGAACAGCACCAGGTCCGTG+TGG | - | chr8.2:17828864-17828883 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 17827238 | 17828935 | 17827238 | ID=MS.gene51046 |
| chr8.2 | mRNA | 17827238 | 17828935 | 17827238 | ID=MS.gene51046.t1;Parent=MS.gene51046 |
| chr8.2 | exon | 17827238 | 17827426 | 17827238 | ID=MS.gene51046.t1.exon1;Parent=MS.gene51046.t1 |
| chr8.2 | CDS | 17827238 | 17827426 | 17827238 | ID=cds.MS.gene51046.t1;Parent=MS.gene51046.t1 |
| chr8.2 | exon | 17827727 | 17827847 | 17827727 | ID=MS.gene51046.t1.exon2;Parent=MS.gene51046.t1 |
| chr8.2 | CDS | 17827727 | 17827847 | 17827727 | ID=cds.MS.gene51046.t1;Parent=MS.gene51046.t1 |
| chr8.2 | exon | 17827954 | 17828045 | 17827954 | ID=MS.gene51046.t1.exon3;Parent=MS.gene51046.t1 |
| chr8.2 | CDS | 17827954 | 17828045 | 17827954 | ID=cds.MS.gene51046.t1;Parent=MS.gene51046.t1 |
| chr8.2 | exon | 17828127 | 17828223 | 17828127 | ID=MS.gene51046.t1.exon4;Parent=MS.gene51046.t1 |
| chr8.2 | CDS | 17828127 | 17828223 | 17828127 | ID=cds.MS.gene51046.t1;Parent=MS.gene51046.t1 |
| chr8.2 | exon | 17828580 | 17828935 | 17828580 | ID=MS.gene51046.t1.exon5;Parent=MS.gene51046.t1 |
| chr8.2 | CDS | 17828580 | 17828935 | 17828580 | ID=cds.MS.gene51046.t1;Parent=MS.gene51046.t1 |
| Gene Sequence |
| Protein sequence |
