Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51047.t1 | XP_003608997.2 | 99.7 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 1.10E-154 | 555.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51047.t1 | Q5GI04 | 88.4 | 285 | 33 | 0 | 1 | 285 | 1 | 285 | 6.2e-141 | 501.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51047.t1 | G7JPW8 | 99.7 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 8.2e-155 | 555.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene51047 | MS.gene029948 | PPI |
| MS.gene51047 | MS.gene030984 | PPI |
| MS.gene51047 | MS.gene028857 | PPI |
| MS.gene51047 | MS.gene043467 | PPI |
| MS.gene51047 | MS.gene20481 | PPI |
| MS.gene51047 | MS.gene055768 | PPI |
| MS.gene31416 | MS.gene51047 | PPI |
| MS.gene51047 | MS.gene59292 | PPI |
| MS.gene51047 | MS.gene68929 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51047.t1 | MTR_4g107810 | 99.650 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 0.0 | 591 |
| MS.gene51047.t1 | MTR_4g107760 | 99.650 | 286 | 1 | 0 | 1 | 286 | 1 | 286 | 0.0 | 591 |
| MS.gene51047.t1 | MTR_4g107810 | 99.650 | 286 | 1 | 0 | 1 | 286 | 61 | 346 | 0.0 | 589 |
| MS.gene51047.t1 | MTR_4g107830 | 90.033 | 301 | 13 | 2 | 1 | 286 | 1 | 299 | 0.0 | 545 |
| MS.gene51047.t1 | MTR_4g107720 | 95.105 | 286 | 12 | 1 | 1 | 286 | 1 | 284 | 0.0 | 541 |
| MS.gene51047.t1 | MTR_6g011380 | 84.211 | 285 | 45 | 0 | 1 | 285 | 1 | 285 | 0.0 | 502 |
| MS.gene51047.t1 | MTR_4g107730 | 88.732 | 284 | 26 | 2 | 1 | 282 | 1 | 280 | 1.50e-178 | 493 |
| MS.gene51047.t1 | MTR_8g469160 | 78.169 | 284 | 62 | 0 | 1 | 284 | 1 | 284 | 5.47e-175 | 484 |
| MS.gene51047.t1 | MTR_6g460470 | 56.446 | 287 | 123 | 1 | 1 | 285 | 1 | 287 | 1.29e-117 | 339 |
| MS.gene51047.t1 | MTR_4g107700 | 96.471 | 85 | 1 | 1 | 202 | 286 | 6 | 88 | 3.85e-51 | 163 |
| MS.gene51047.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 5 | 19 | 199 | 71 | 249 | 5.28e-11 | 63.2 |
| MS.gene51047.t1 | MTR_6g060500 | 49.231 | 65 | 20 | 1 | 161 | 212 | 1 | 65 | 5.31e-11 | 60.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51047.t1 | AT5G62740 | 90.071 | 282 | 28 | 0 | 1 | 282 | 1 | 282 | 0.0 | 529 |
| MS.gene51047.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene51047.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene51047.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene51047.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene51047.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene51047.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene51047.t1 | AT1G69840 | 84.043 | 282 | 45 | 0 | 1 | 282 | 1 | 282 | 1.30e-175 | 486 |
| MS.gene51047.t1 | AT3G01290 | 79.433 | 282 | 58 | 0 | 1 | 282 | 1 | 282 | 2.47e-170 | 473 |
| MS.gene51047.t1 | AT5G51570 | 56.597 | 288 | 123 | 1 | 1 | 286 | 1 | 288 | 9.92e-122 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.222517 | 8.2:-17789041 | MS.gene51047:CDS |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.2:+17788952 | None:intergenic |
| CTTTATTTGCAAGATCTTCT+CGG | 0.287861 | 8.2:+17789229 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.2:+17790035 | None:intergenic |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.326852 | 8.2:-17790705 | MS.gene51047:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.2:-17789892 | MS.gene51047:intron |
| CTCTCTTCGGGTACAACAAT+TGG | 0.345701 | 8.2:-17790607 | MS.gene51047:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.373724 | 8.2:-17790636 | MS.gene51047:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.384185 | 8.2:-17789081 | MS.gene51047:CDS |
| TTGCTGGGCATCTCTCTCTT+CGG | 0.388662 | 8.2:-17790620 | MS.gene51047:CDS |
| TGCTGGGCATCTCTCTCTTC+GGG | 0.395978 | 8.2:-17790619 | MS.gene51047:CDS |
| GCCCGCTTCACATGGACATC+TGG | 0.415565 | 8.2:+17789832 | None:intergenic |
| GGTTTGAGAGACAGTGTGAT+TGG | 0.428212 | 8.2:-17789131 | MS.gene51047:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.2:-17788949 | MS.gene51047:CDS |
| GCTGAGTCTAAATATCTCTC+TGG | 0.445424 | 8.2:-17789191 | MS.gene51047:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.2:-17790679 | MS.gene51047:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.2:-17790651 | MS.gene51047:CDS |
| AAGAATGAGGTTGGCAGCTA+AGG | 0.482595 | 8.2:-17789264 | MS.gene51047:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.491841 | 8.2:-17790254 | MS.gene51047:CDS |
| GCCAGATGTCCATGTGAAGC+GGG | 0.510212 | 8.2:-17789833 | MS.gene51047:CDS |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.2:-17790711 | MS.gene51047:CDS |
| GTCTAAATATCTCTCTGGGA+TGG | 0.513624 | 8.2:-17789186 | MS.gene51047:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.2:-17790678 | MS.gene51047:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.2:+17790660 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.2:+17789010 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.2:-17788996 | MS.gene51047:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.2:-17790659 | MS.gene51047:CDS |
| TCTAAATATCTCTCTGGGAT+GGG | 0.543650 | 8.2:-17789185 | MS.gene51047:CDS |
| CATTCATAGCCCGCTTCACA+TGG | 0.551008 | 8.2:+17789824 | None:intergenic |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.2:-17789213 | MS.gene51047:CDS |
| CAACGTCAAGCTATTGTGGA+TGG | 0.553453 | 8.2:-17789152 | MS.gene51047:CDS |
| ATAGTAACGAACCTTTGTCT+TGG | 0.554746 | 8.2:+17790569 | None:intergenic |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.2:+17788978 | None:intergenic |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.2:-17789002 | MS.gene51047:CDS |
| CTGAGTCTAAATATCTCTCT+GGG | 0.568387 | 8.2:-17789190 | MS.gene51047:CDS |
| TCCTTGGAAAACGAATTGCT+GGG | 0.571212 | 8.2:-17790635 | MS.gene51047:CDS |
| GACGACTGCAAAAGATGTCA+TGG | 0.572197 | 8.2:-17789087 | MS.gene51047:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.2:+17789013 | None:intergenic |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.2:+17790652 | None:intergenic |
| GGCAGCTAAGGAGAAGGCTG+AGG | 0.585754 | 8.2:-17789252 | MS.gene51047:CDS |
| TCGCCAACGTCAAGCTATTG+TGG | 0.586819 | 8.2:-17789156 | MS.gene51047:CDS |
| ATACCGTGCCTTGGCAGACA+AGG | 0.587225 | 8.2:-17790245 | MS.gene51047:CDS |
| AGCCAGATGTCCATGTGAAG+CGG | 0.595395 | 8.2:-17789834 | MS.gene51047:CDS |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.2:+17789202 | None:intergenic |
| ATCATTAGCCTTGTCTGCCA+AGG | 0.596483 | 8.2:+17790237 | None:intergenic |
| GCTATGAATGAAATCAATGC+AGG | 0.600928 | 8.2:-17789811 | MS.gene51047:intron |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.2:-17790000 | MS.gene51047:CDS |
| ATCAGCTGCAAGAATGAGGT+TGG | 0.607568 | 8.2:-17789273 | MS.gene51047:intron |
| TGTGATCAGCTGCAAGAATG+AGG | 0.607950 | 8.2:-17789277 | MS.gene51047:intron |
| AAGTGTTCCAAAACTCAACT+TGG | 0.610923 | 8.2:-17790042 | MS.gene51047:CDS |
| GAGGTTGGCAGCTAAGGAGA+AGG | 0.617756 | 8.2:-17789258 | MS.gene51047:CDS |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.2:-17790724 | MS.gene51047:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.621419 | 8.2:-17789982 | MS.gene51047:intron |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.2:-17788960 | MS.gene51047:CDS |
| TAGCCTTGTCTGCCAAGGCA+CGG | 0.623988 | 8.2:+17790242 | None:intergenic |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.2:-17788948 | MS.gene51047:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.2:-17789219 | MS.gene51047:CDS |
| ACTGATGAGATAGAGAACCC+TGG | 0.648950 | 8.2:+17788931 | None:intergenic |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.2:-17789218 | MS.gene51047:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.653157 | 8.2:-17790580 | MS.gene51047:intron |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.2:+17788987 | None:intergenic |
| CATCCACAATAGCTTGACGT+TGG | 0.677687 | 8.2:+17789153 | None:intergenic |
| TGTCAAAATATTGAGTGACA+AGG | 0.695273 | 8.2:+17789057 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TACAATTTTTTTTATTGATA+TGG | - | chr8.2:17789728-17789747 | MS.gene51047:intron | 10.0% |
| !!! | AAAGAAAGTATTTATGTTAT+TGG | + | chr8.2:17789177-17789196 | None:intergenic | 15.0% |
| !!! | TCCTAAATCTAATTTTATTT+AGG | - | chr8.2:17790128-17790147 | MS.gene51047:intron | 15.0% |
| !! | AATATGCAAATTATCTACTA+AGG | - | chr8.2:17789578-17789597 | MS.gene51047:intron | 20.0% |
| !! | GCCTAAATAAAATTAGATTT+AGG | + | chr8.2:17790132-17790151 | None:intergenic | 20.0% |
| !!! | TAAATACTTTCTTTTTGACT+AGG | - | chr8.2:17789183-17789202 | MS.gene51047:CDS | 20.0% |
| !!! | TTTTGACTAGGATTTTTTTT+AGG | - | chr8.2:17789195-17789214 | MS.gene51047:CDS | 20.0% |
| ! | AATTCAATGGAAAATATACG+AGG | + | chr8.2:17789345-17789364 | None:intergenic | 25.0% |
| ! | ACCAATCAACATTAATTCAA+TGG | + | chr8.2:17789358-17789377 | None:intergenic | 25.0% |
| ! | ATTTATGTTATTGGTAAGCA+TGG | + | chr8.2:17789168-17789187 | None:intergenic | 25.0% |
| ! | CAAAAACATAAGCTTGAATT+TGG | + | chr8.2:17789494-17789513 | None:intergenic | 25.0% |
| ! | GTTAAAACATAAGTCAAACA+AGG | + | chr8.2:17790246-17790265 | None:intergenic | 25.0% |
| ! | TCCATTGAATTAATGTTGAT+TGG | - | chr8.2:17789354-17789373 | MS.gene51047:intron | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | - | chr8.2:17790635-17790654 | MS.gene51047:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | - | chr8.2:17789495-17789514 | MS.gene51047:intron | 25.0% |
| !!! | TACATATGAAGTATTGAAAG+TGG | + | chr8.2:17789295-17789314 | None:intergenic | 25.0% |
| !!! | TTTTATTTAGGCATTTCCTT+TGG | - | chr8.2:17790140-17790159 | MS.gene51047:intron | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | - | chr8.2:17789676-17789695 | MS.gene51047:intron | 30.0% | |
| AATCAAATTAACATAGCACC+AGG | + | chr8.2:17789227-17789246 | None:intergenic | 30.0% | |
| ACCATATAAAGAAAACACGT+AGG | + | chr8.2:17789250-17789269 | None:intergenic | 30.0% | |
| ATATAGCAATTCGCGAATAA+AGG | + | chr8.2:17790357-17790376 | None:intergenic | 30.0% | |
| GATATTTGGCAAATAGAACT+CGG | + | chr8.2:17790333-17790352 | None:intergenic | 30.0% | |
| GTACATAAACATGCAATAAG+TGG | - | chr8.2:17789549-17789568 | MS.gene51047:intron | 30.0% | |
| TAACTTTGAATCATCTCAAC+AGG | - | chr8.2:17789768-17789787 | MS.gene51047:intron | 30.0% | |
| TGTCAAAATATTGAGTGACA+AGG | + | chr8.2:17790622-17790641 | None:intergenic | 30.0% | |
| TTATCTCTTTCACTAGTATC+AGG | - | chr8.2:17789269-17789288 | MS.gene51047:CDS | 30.0% | |
| TTTATCTTATTCCCCAAAAG+AGG | - | chr8.2:17789969-17789988 | MS.gene51047:intron | 30.0% | |
| TTTATTGATATGGTGAACTG+TGG | - | chr8.2:17789738-17789757 | MS.gene51047:intron | 30.0% | |
| ! | CTTTATTTGCAAGATCTTCT+CGG | + | chr8.2:17790450-17790469 | None:intergenic | 30.0% |
| ! | GATTTTCAGTTAATGTACCA+GGG | - | chr8.2:17790567-17790586 | MS.gene51047:intron | 30.0% |
| ! | TCCTACGTGTTTTCTTTATA+TGG | - | chr8.2:17789246-17789265 | MS.gene51047:CDS | 30.0% |
| !!! | AGGTTTTGGGAAATTTGAAA+AGG | - | chr8.2:17788985-17789004 | MS.gene51047:CDS | 30.0% |
| !!! | ATTTTTTTTAGGTACCATCC+TGG | - | chr8.2:17789206-17789225 | MS.gene51047:CDS | 30.0% |
| !!! | TGGTTTTAATATTTGCTTGC+AGG | - | chr8.2:17789374-17789393 | MS.gene51047:intron | 30.0% |
| AAATTAACATAGCACCAGGA+TGG | + | chr8.2:17789223-17789242 | None:intergenic | 35.0% | |
| AAGTGTTCCAAAACTCAACT+TGG | - | chr8.2:17789634-17789653 | MS.gene51047:intron | 35.0% | |
| ATAGTAACGAACCTTTGTCT+TGG | + | chr8.2:17789110-17789129 | None:intergenic | 35.0% | |
| ATGTTTATGTACTGCTAAGC+AGG | + | chr8.2:17789541-17789560 | None:intergenic | 35.0% | |
| CATGTATGGAAAACTATGTG+AGG | - | chr8.2:17790066-17790085 | MS.gene51047:intron | 35.0% | |
| CTGAGTCTAAATATCTCTCT+GGG | - | chr8.2:17790486-17790505 | MS.gene51047:intron | 35.0% | |
| GCTATGAATGAAATCAATGC+AGG | - | chr8.2:17789865-17789884 | MS.gene51047:CDS | 35.0% | |
| TCGCGAATAAAGGAGATATT+TGG | + | chr8.2:17790347-17790366 | None:intergenic | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | - | chr8.2:17790595-17790614 | MS.gene51047:CDS | 35.0% | |
| TGTTTATGTACTGCTAAGCA+GGG | + | chr8.2:17789540-17789559 | None:intergenic | 35.0% | |
| ! | GGATTTTCAGTTAATGTACC+AGG | - | chr8.2:17790566-17790585 | MS.gene51047:intron | 35.0% |
| ! | TGGCTATGAAAGAAGGTTTT+GGG | - | chr8.2:17788972-17788991 | MS.gene51047:CDS | 35.0% |
| !! | AAACACTGATTGACCTCTTT+TGG | + | chr8.2:17789985-17790004 | None:intergenic | 35.0% |
| !! | AACACTGATTGACCTCTTTT+GGG | + | chr8.2:17789984-17790003 | None:intergenic | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | + | chr8.2:17789644-17789663 | None:intergenic | 35.0% |
| !! | TCTAAATATCTCTCTGGGAT+GGG | - | chr8.2:17790491-17790510 | MS.gene51047:intron | 35.0% |
| !!! | CTTGTTTTGTTGCTTCTTTG+GGG | - | chr8.2:17790163-17790182 | MS.gene51047:intron | 35.0% |
| !!! | GCTTGTTTTGTTGCTTCTTT+GGG | - | chr8.2:17790162-17790181 | MS.gene51047:intron | 35.0% |
| AATGAACACAGCAGAAGACT+TGG | + | chr8.2:17790669-17790688 | None:intergenic | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | - | chr8.2:17789096-17789115 | MS.gene51047:CDS | 40.0% | |
| CATGGAATGACATGAACACT+TGG | + | chr8.2:17789150-17789169 | None:intergenic | 40.0% | |
| GAAGCAACAAAACAAGCCAA+AGG | + | chr8.2:17790159-17790178 | None:intergenic | 40.0% | |
| GCTGAGTCTAAATATCTCTC+TGG | - | chr8.2:17790485-17790504 | MS.gene51047:intron | 40.0% | |
| TCCTTGGAAAACGAATTGCT+GGG | - | chr8.2:17789041-17789060 | MS.gene51047:CDS | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | - | chr8.2:17788965-17788984 | MS.gene51047:CDS | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | - | chr8.2:17789694-17789713 | MS.gene51047:intron | 40.0% | |
| TTCACGTAATAGCAATGCTG+TGG | + | chr8.2:17789919-17789938 | None:intergenic | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | - | chr8.2:17789040-17789059 | MS.gene51047:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | - | chr8.2:17789422-17789441 | MS.gene51047:intron | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | + | chr8.2:17789037-17789056 | None:intergenic | 40.0% |
| ! | GTCTAAATATCTCTCTGGGA+TGG | - | chr8.2:17790490-17790509 | MS.gene51047:intron | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | - | chr8.2:17788971-17788990 | MS.gene51047:CDS | 40.0% |
| !! | ACACTGATTGACCTCTTTTG+GGG | + | chr8.2:17789983-17790002 | None:intergenic | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | - | chr8.2:17788997-17789016 | MS.gene51047:CDS | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | - | chr8.2:17788952-17788971 | MS.gene51047:CDS | 40.0% |
| !!! | GGCTTGTTTTGTTGCTTCTT+TGG | - | chr8.2:17790161-17790180 | MS.gene51047:intron | 40.0% |
| AACATAGCATGACCGCCTAT+TGG | + | chr8.2:17790190-17790209 | None:intergenic | 45.0% | |
| AAGAATGAGGTTGGCAGCTA+AGG | - | chr8.2:17790412-17790431 | MS.gene51047:intron | 45.0% | |
| ACTGATGAGATAGAGAACCC+TGG | + | chr8.2:17790748-17790767 | None:intergenic | 45.0% | |
| ATCAGCTGCAAGAATGAGGT+TGG | - | chr8.2:17790403-17790422 | MS.gene51047:intron | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | - | chr8.2:17789784-17789803 | MS.gene51047:intron | 45.0% | |
| CAACGTCAAGCTATTGTGGA+TGG | - | chr8.2:17790524-17790543 | MS.gene51047:intron | 45.0% | |
| CACGGTTCGTCATACATGTA+TGG | - | chr8.2:17790052-17790071 | MS.gene51047:CDS | 45.0% | |
| CATCCACAATAGCTTGACGT+TGG | + | chr8.2:17790526-17790545 | None:intergenic | 45.0% | |
| CTCTCTTCGGGTACAACAAT+TGG | - | chr8.2:17789069-17789088 | MS.gene51047:CDS | 45.0% | |
| GACGACTGCAAAAGATGTCA+TGG | - | chr8.2:17790589-17790608 | MS.gene51047:CDS | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | + | chr8.2:17790727-17790746 | None:intergenic | 45.0% | |
| GGTTTGAGAGACAGTGTGAT+TGG | - | chr8.2:17790545-17790564 | MS.gene51047:intron | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | - | chr8.2:17790716-17790735 | MS.gene51047:CDS | 45.0% | |
| TACATGTATGACGAACCGTG+AGG | + | chr8.2:17790052-17790071 | None:intergenic | 45.0% | |
| TAGGCGGTCATGCTATGTTA+TGG | - | chr8.2:17790191-17790210 | MS.gene51047:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | - | chr8.2:17790674-17790693 | MS.gene51047:CDS | 45.0% | |
| TGTACTGCTAAGCAGGGTTA+TGG | + | chr8.2:17789534-17789553 | None:intergenic | 45.0% | |
| TGTGATCAGCTGCAAGAATG+AGG | - | chr8.2:17790399-17790418 | MS.gene51047:intron | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | - | chr8.2:17790458-17790477 | MS.gene51047:intron | 45.0% | |
| !! | AATTCGTGATGGACTTCTCC+AGG | - | chr8.2:17790727-17790746 | MS.gene51047:CDS | 45.0% |
| !! | ATCATTAGCCTTGTCTGCCA+AGG | + | chr8.2:17789442-17789461 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | - | chr8.2:17790728-17790747 | MS.gene51047:CDS | 45.0% |
| !! | TTGCTTCTTTGGGGTCCAAT+AGG | - | chr8.2:17790172-17790191 | MS.gene51047:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | - | chr8.2:17788998-17789017 | MS.gene51047:CDS | 45.0% |
| AGCCAGATGTCCATGTGAAG+CGG | - | chr8.2:17789842-17789861 | MS.gene51047:CDS | 50.0% | |
| ATGACGAACCGTGAGGACAA+GGG | + | chr8.2:17790045-17790064 | None:intergenic | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | + | chr8.2:17789027-17789046 | None:intergenic | 50.0% | |
| CATTCATAGCCCGCTTCACA+TGG | + | chr8.2:17789855-17789874 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | - | chr8.2:17789025-17789044 | MS.gene51047:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | - | chr8.2:17790457-17790476 | MS.gene51047:intron | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | + | chr8.2:17790666-17790685 | None:intergenic | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | - | chr8.2:17790680-17790699 | MS.gene51047:CDS | 50.0% | |
| TATGACGAACCGTGAGGACA+AGG | + | chr8.2:17790046-17790065 | None:intergenic | 50.0% | |
| TCGCCAACGTCAAGCTATTG+TGG | - | chr8.2:17790520-17790539 | MS.gene51047:intron | 50.0% | |
| TTGCTGGGCATCTCTCTCTT+CGG | - | chr8.2:17789056-17789075 | MS.gene51047:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | + | chr8.2:17790477-17790496 | None:intergenic | 50.0% | |
| ! | ACATCTTTTGCAGTCGTCCC+TGG | + | chr8.2:17790587-17790606 | None:intergenic | 50.0% |
| ! | GCCCAGCAATTCGTTTTCCA+AGG | + | chr8.2:17789045-17789064 | None:intergenic | 50.0% |
| !! | CTTCTTTGGGGTCCAATAGG+CGG | - | chr8.2:17790175-17790194 | MS.gene51047:intron | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | - | chr8.2:17790463-17790482 | MS.gene51047:intron | 55.0% | |
| AATGCCTGCCCTTGTCCTCA+CGG | - | chr8.2:17790034-17790053 | MS.gene51047:CDS | 55.0% | |
| ATACCGTGCCTTGGCAGACA+AGG | - | chr8.2:17789431-17789450 | MS.gene51047:intron | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | + | chr8.2:17789019-17789038 | None:intergenic | 55.0% | |
| GAGGTTGGCAGCTAAGGAGA+AGG | - | chr8.2:17790418-17790437 | MS.gene51047:intron | 55.0% | |
| GCCAGATGTCCATGTGAAGC+GGG | - | chr8.2:17789843-17789862 | MS.gene51047:CDS | 55.0% | |
| TGCTGGGCATCTCTCTCTTC+GGG | - | chr8.2:17789057-17789076 | MS.gene51047:CDS | 55.0% | |
| !! | TAGCCTTGTCTGCCAAGGCA+CGG | + | chr8.2:17789437-17789456 | None:intergenic | 55.0% |
| CGAACAGCACCAGGTCCATG+TGG | + | chr8.2:17790692-17790711 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | - | chr8.2:17789017-17789036 | MS.gene51047:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | + | chr8.2:17790701-17790720 | None:intergenic | 60.0% | |
| GCCCGCTTCACATGGACATC+TGG | + | chr8.2:17789847-17789866 | None:intergenic | 60.0% | |
| GGCAGCTAAGGAGAAGGCTG+AGG | - | chr8.2:17790424-17790443 | MS.gene51047:intron | 60.0% | |
| CGAACCGTGAGGACAAGGGC+AGG | + | chr8.2:17790041-17790060 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 17788929 | 17790769 | 17788929 | ID=MS.gene51047 |
| chr8.2 | mRNA | 17788929 | 17790769 | 17788929 | ID=MS.gene51047.t1;Parent=MS.gene51047 |
| chr8.2 | exon | 17790581 | 17790769 | 17790581 | ID=MS.gene51047.t1.exon1;Parent=MS.gene51047.t1 |
| chr8.2 | CDS | 17790581 | 17790769 | 17790581 | ID=cds.MS.gene51047.t1;Parent=MS.gene51047.t1 |
| chr8.2 | exon | 17790182 | 17790302 | 17790182 | ID=MS.gene51047.t1.exon2;Parent=MS.gene51047.t1 |
| chr8.2 | CDS | 17790182 | 17790302 | 17790182 | ID=cds.MS.gene51047.t1;Parent=MS.gene51047.t1 |
| chr8.2 | exon | 17789983 | 17790074 | 17789983 | ID=MS.gene51047.t1.exon3;Parent=MS.gene51047.t1 |
| chr8.2 | CDS | 17789983 | 17790074 | 17789983 | ID=cds.MS.gene51047.t1;Parent=MS.gene51047.t1 |
| chr8.2 | exon | 17789812 | 17789908 | 17789812 | ID=MS.gene51047.t1.exon4;Parent=MS.gene51047.t1 |
| chr8.2 | CDS | 17789812 | 17789908 | 17789812 | ID=cds.MS.gene51047.t1;Parent=MS.gene51047.t1 |
| chr8.2 | exon | 17788929 | 17789290 | 17788929 | ID=MS.gene51047.t1.exon5;Parent=MS.gene51047.t1 |
| chr8.2 | CDS | 17788929 | 17789290 | 17788929 | ID=cds.MS.gene51047.t1;Parent=MS.gene51047.t1 |
| Gene Sequence |
| Protein sequence |
