Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51051.t1 | XP_003608997.2 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 6.50E-150 | 540 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51051.t1 | Q5GI04 | 87.4 | 285 | 36 | 0 | 1 | 285 | 1 | 285 | 8.0e-141 | 501.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51051.t1 | G7JPW8 | 95.8 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 4.7e-150 | 540.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene59292 | MS.gene51051 | PPI |
| MS.gene68929 | MS.gene51051 | PPI |
| MS.gene055768 | MS.gene51051 | PPI |
| MS.gene31416 | MS.gene51051 | PPI |
| MS.gene043467 | MS.gene51051 | PPI |
| MS.gene029948 | MS.gene51051 | PPI |
| MS.gene20481 | MS.gene51051 | PPI |
| MS.gene030984 | MS.gene51051 | PPI |
| MS.gene51051 | MS.gene028857 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51051.t1 | MTR_4g107830 | 92.256 | 297 | 8 | 1 | 1 | 282 | 1 | 297 | 0.0 | 557 |
| MS.gene51051.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene51051.t1 | MTR_4g107760 | 95.804 | 286 | 12 | 0 | 1 | 286 | 1 | 286 | 0.0 | 553 |
| MS.gene51051.t1 | MTR_4g107810 | 95.804 | 286 | 12 | 0 | 1 | 286 | 61 | 346 | 0.0 | 552 |
| MS.gene51051.t1 | MTR_4g107720 | 94.326 | 282 | 16 | 0 | 1 | 282 | 1 | 282 | 0.0 | 536 |
| MS.gene51051.t1 | MTR_6g011380 | 83.688 | 282 | 46 | 0 | 1 | 282 | 1 | 282 | 7.37e-180 | 497 |
| MS.gene51051.t1 | MTR_8g469160 | 79.859 | 283 | 57 | 0 | 1 | 283 | 1 | 283 | 2.90e-177 | 490 |
| MS.gene51051.t1 | MTR_4g107730 | 87.153 | 288 | 29 | 3 | 1 | 286 | 1 | 282 | 3.22e-177 | 490 |
| MS.gene51051.t1 | MTR_6g460470 | 56.690 | 284 | 121 | 1 | 1 | 282 | 1 | 284 | 8.19e-117 | 337 |
| MS.gene51051.t1 | MTR_4g107700 | 96.296 | 81 | 3 | 0 | 202 | 282 | 6 | 86 | 1.26e-49 | 159 |
| MS.gene51051.t1 | MTR_3g093220 | 30.055 | 183 | 122 | 4 | 19 | 199 | 71 | 249 | 2.62e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51051.t1 | AT5G62740 | 89.362 | 282 | 30 | 0 | 1 | 282 | 1 | 282 | 0.0 | 530 |
| MS.gene51051.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51051.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51051.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51051.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51051.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51051.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51051.t1 | AT1G69840 | 82.517 | 286 | 50 | 0 | 1 | 286 | 1 | 286 | 6.32e-174 | 482 |
| MS.gene51051.t1 | AT3G01290 | 78.723 | 282 | 60 | 0 | 1 | 282 | 1 | 282 | 5.75e-170 | 472 |
| MS.gene51051.t1 | AT5G51570 | 57.042 | 284 | 120 | 1 | 1 | 282 | 1 | 284 | 7.71e-122 | 350 |
Find 63 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGACACTATGAAAGAAAT+TGG | 0.142368 | 8.4:+19341660 | MS.gene51051:CDS |
| ATGTTCTCATTGCAGTAATT+AGG | 0.205184 | 8.4:+19340638 | MS.gene51051:intron |
| GCCTTCTTCACATGCTTATC+TGG | 0.244299 | 8.4:-19340874 | None:intergenic |
| GGAGAAGTCCATCACGAATT+TGG | 0.279174 | 8.4:-19341749 | None:intergenic |
| GTATCATCCAAGTTGAGTTT+TGG | 0.298817 | 8.4:-19340670 | None:intergenic |
| CTCTCTTCGGGTTCAACAAT+TGG | 0.301031 | 8.4:+19340099 | MS.gene51051:CDS |
| TGTTCTCATTGCAGTAATTA+GGG | 0.306159 | 8.4:+19340639 | MS.gene51051:intron |
| TGCTGGTCATCTCTCTCTTC+GGG | 0.329796 | 8.4:+19340087 | MS.gene51051:CDS |
| TTGACACTATGAAAGAAATT+GGG | 0.344707 | 8.4:+19341661 | MS.gene51051:CDS |
| CAACAGGCTATGTCAGCTTA+TGG | 0.345528 | 8.4:+19340814 | MS.gene51051:intron |
| TTGCTGGTCATCTCTCTCTT+CGG | 0.350694 | 8.4:+19340086 | MS.gene51051:CDS |
| GTGGCTATGAAAGAAGGTTT+TGG | 0.357672 | 8.4:+19340001 | MS.gene51051:CDS |
| TTCCTTGGAAAACGAATTGC+TGG | 0.386474 | 8.4:+19340070 | MS.gene51051:CDS |
| GGATTGAGAGACAGTGTGAT+TGG | 0.394088 | 8.4:+19341570 | MS.gene51051:CDS |
| GCCAGATAAGCATGTGAAGA+AGG | 0.431501 | 8.4:+19340873 | MS.gene51051:CDS |
| AATTCGTGATGGACTTCTCC+AGG | 0.436039 | 8.4:+19341752 | MS.gene51051:CDS |
| TGCAAAAGATGTCATGGATA+TGG | 0.437735 | 8.4:+19341620 | MS.gene51051:CDS |
| ATTTGAAAAGGTGCTTCAGC+CGG | 0.463345 | 8.4:+19340027 | MS.gene51051:CDS |
| CATTGCATGCCATGGTTCCT+TGG | 0.471591 | 8.4:+19340055 | MS.gene51051:CDS |
| GTCTAAATATCTCGCTGGGA+TGG | 0.480437 | 8.4:+19341515 | MS.gene51051:CDS |
| TTCTATTCAATACCGTGCCT+TGG | 0.481733 | 8.4:+19340467 | MS.gene51051:CDS |
| ATCGTTTGCCTTGTTTGCCA+AGG | 0.508315 | 8.4:-19340484 | None:intergenic |
| TAACAAACCAACCTTTGTCT+TGG | 0.511154 | 8.4:-19340137 | None:intergenic |
| TCTCAAGTGGCTATGAAAGA+AGG | 0.511380 | 8.4:+19339995 | MS.gene51051:CDS |
| TTTGAAAAGGTGCTTCAGCC+GGG | 0.514758 | 8.4:+19340028 | MS.gene51051:CDS |
| CATGGCATGCAATGGCATCC+CGG | 0.521469 | 8.4:-19340046 | None:intergenic |
| AATGAACACAGCAGAAGACT+TGG | 0.521852 | 8.4:-19341691 | None:intergenic |
| TCTAAATATCTCGCTGGGAT+GGG | 0.525100 | 8.4:+19341516 | MS.gene51051:CDS |
| TTGCCTTGTTTGCCAAGGCA+CGG | 0.526106 | 8.4:-19340479 | None:intergenic |
| GTGTTCATTCCACATGGACC+TGG | 0.527747 | 8.4:+19341705 | MS.gene51051:CDS |
| CAACGTCAAGCCATTGTGGA+TGG | 0.529578 | 8.4:+19341549 | MS.gene51051:CDS |
| CGGGATGCCATTGCATGCCA+TGG | 0.534181 | 8.4:+19340047 | MS.gene51051:CDS |
| AATAAAGCGAGCCGAGGGTG+AGG | 0.551044 | 8.4:+19341488 | MS.gene51051:CDS |
| GCTGAGTCTAAATATCTCGC+TGG | 0.552574 | 8.4:+19341510 | MS.gene51051:CDS |
| GACAAGTGCAAAAGATGTCA+TGG | 0.553387 | 8.4:+19341614 | MS.gene51051:CDS |
| CAGTGTTCCAAAACTCAACT+TGG | 0.553554 | 8.4:+19340663 | MS.gene51051:CDS |
| TATGATTAGCTGCAAGAATG+AGG | 0.556005 | 8.4:+19341424 | MS.gene51051:intron |
| GCAACATCGCGAACAGCACC+AGG | 0.556632 | 8.4:-19341723 | None:intergenic |
| GCTATGAATGAAATCAATGC+TGG | 0.558940 | 8.4:+19340895 | MS.gene51051:CDS |
| TCTGCTGTGTTCATTCCACA+TGG | 0.564187 | 8.4:+19341699 | MS.gene51051:CDS |
| ATACCGTGCCTTGGCAAACA+AGG | 0.570829 | 8.4:+19340476 | MS.gene51051:CDS |
| GAACACAGCAGAAGACTTGG+AGG | 0.574169 | 8.4:-19341688 | None:intergenic |
| TGACACTATGAAAGAAATTG+GGG | 0.579718 | 8.4:+19341662 | MS.gene51051:CDS |
| CTGAGTCTAAATATCTCGCT+GGG | 0.580679 | 8.4:+19341511 | MS.gene51051:CDS |
| CAAGGAACCATGGCATGCAA+TGG | 0.581813 | 8.4:-19340054 | None:intergenic |
| TTTAGACTCAGCCTCACCCT+CGG | 0.596378 | 8.4:-19341499 | None:intergenic |
| AAATGAAATTGCAAAAGCTG+TGG | 0.603554 | 8.4:+19340705 | MS.gene51051:CDS |
| TGTGGAAGAAGAACTTGAGA+AGG | 0.603618 | 8.4:+19340723 | MS.gene51051:CDS |
| ACTCATGAGTTAGAGAACCC+TGG | 0.616759 | 8.4:-19341770 | None:intergenic |
| GCAAGTTGATCAATCTCAAG+TGG | 0.619072 | 8.4:+19339982 | MS.gene51051:CDS |
| GTTGCTAGCCAAATTCGTGA+TGG | 0.622218 | 8.4:+19341741 | MS.gene51051:CDS |
| TACAAACTTAGCAACACAAG+GGG | 0.623209 | 8.4:+19340513 | MS.gene51051:CDS |
| TTTACAAACTTAGCAACACA+AGG | 0.632164 | 8.4:+19340511 | MS.gene51051:CDS |
| GAGGATCGCAGCTAATGAGA+AGG | 0.632818 | 8.4:+19341443 | MS.gene51051:CDS |
| ATTCGTGATGGACTTCTCCA+GGG | 0.634995 | 8.4:+19341753 | MS.gene51051:CDS |
| CTTGCAAATAAAGCGAGCCG+AGG | 0.639259 | 8.4:+19341482 | MS.gene51051:CDS |
| TCGTCAACGTCAAGCCATTG+TGG | 0.640251 | 8.4:+19341545 | MS.gene51051:CDS |
| CAAATGTGAGACCAAGACAA+AGG | 0.650717 | 8.4:+19340126 | MS.gene51051:CDS |
| TTGCAAATAAAGCGAGCCGA+GGG | 0.652348 | 8.4:+19341483 | MS.gene51051:CDS |
| GTCTCTCAATCCATCCACAA+TGG | 0.662038 | 8.4:-19341559 | None:intergenic |
| CGAACAGCACCAGGTCCATG+TGG | 0.675254 | 8.4:-19341714 | None:intergenic |
| TTACAAACTTAGCAACACAA+GGG | 0.685367 | 8.4:+19340512 | MS.gene51051:CDS |
| TGTCAAAGTATTGAGTGACA+AGG | 0.713018 | 8.4:-19341644 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATAATAACAATATTGT+GGG | - | chr8.4:19340948-19340967 | None:intergenic | 10.0% |
| !! | AATAAAAATTAAAATTATCC+CGG | - | chr8.4:19340238-19340257 | None:intergenic | 10.0% |
| !! | TAAATATAATAACAATATTG+TGG | - | chr8.4:19340949-19340968 | None:intergenic | 10.0% |
| !! | TTATTTATATGAATTAAACT+TGG | + | chr8.4:19340966-19340985 | MS.gene51051:intron | 10.0% |
| !!! | GGATAATTTTAATTTTTATT+AGG | + | chr8.4:19340238-19340257 | MS.gene51051:intron | 10.0% |
| !! | AATATAATAACAATATTGTG+GGG | - | chr8.4:19340947-19340966 | None:intergenic | 15.0% |
| !! | TTTAATATTTATTTGCTTGT+AGG | + | chr8.4:19340419-19340438 | MS.gene51051:intron | 15.0% |
| !!! | TTTATTTTATTCTCTAAAAG+AGG | + | chr8.4:19341011-19341030 | MS.gene51051:intron | 15.0% |
| !! | AAAAATTTGAGAACAATGTA+CGG | - | chr8.4:19340377-19340396 | None:intergenic | 20.0% |
| !! | ACAATTAGTATTTACAGATA+AGG | + | chr8.4:19340758-19340777 | MS.gene51051:intron | 20.0% |
| !! | ATGTAACAAAAAACTATGTA+GGG | + | chr8.4:19341083-19341102 | MS.gene51051:intron | 20.0% |
| !! | CCATAGTTAAGAAAATATAT+AGG | - | chr8.4:19340293-19340312 | None:intergenic | 20.0% |
| !!! | ATTTATTTTGGAATTAACTC+CGG | + | chr8.4:19341166-19341185 | MS.gene51051:intron | 20.0% |
| !!! | CCTATATATTTTCTTAACTA+TGG | + | chr8.4:19340290-19340309 | MS.gene51051:intron | 20.0% |
| !!! | TTTTGCTGCAAAATTTATTT+TGG | + | chr8.4:19341154-19341173 | MS.gene51051:intron | 20.0% |
| ! | AATCAAAATAACATAGCACA+AGG | - | chr8.4:19340270-19340289 | None:intergenic | 25.0% |
| ! | CATGTAACAAAAAACTATGT+AGG | + | chr8.4:19341082-19341101 | MS.gene51051:intron | 25.0% |
| ! | GGAAACAGTATATGAAAATA+TGG | - | chr8.4:19341400-19341419 | None:intergenic | 25.0% |
| ! | TTGACACTATGAAAGAAATT+GGG | + | chr8.4:19341661-19341680 | MS.gene51051:CDS | 25.0% |
| ! | TTTGACACTATGAAAGAAAT+TGG | + | chr8.4:19341660-19341679 | MS.gene51051:CDS | 25.0% |
| !! | ATTGTTCTCAAATTTTTCCA+TGG | + | chr8.4:19340380-19340399 | MS.gene51051:intron | 25.0% |
| !! | TTGTTCTCAAATTTTTCCAT+GGG | + | chr8.4:19340381-19340400 | MS.gene51051:intron | 25.0% |
| !!! | AGGTTTTGGAAAATTTGAAA+AGG | + | chr8.4:19340015-19340034 | MS.gene51051:CDS | 25.0% |
| !!! | ATTCAAGCTTATGTTTTTGA+TGG | + | chr8.4:19340540-19340559 | MS.gene51051:CDS | 25.0% |
| AAATGAAATTGCAAAAGCTG+TGG | + | chr8.4:19340705-19340724 | MS.gene51051:CDS | 30.0% | |
| ACAAATCAACATTTATCCCA+TGG | - | chr8.4:19340400-19340419 | None:intergenic | 30.0% | |
| AGCAATAAACATGCAATTAC+TGG | + | chr8.4:19340583-19340602 | MS.gene51051:intron | 30.0% | |
| ATCATAGCATAACCAACTAT+TGG | - | chr8.4:19341213-19341232 | None:intergenic | 30.0% | |
| ATGTTCTCATTGCAGTAATT+AGG | + | chr8.4:19340638-19340657 | MS.gene51051:intron | 30.0% | |
| CAAAAACATAAGCTTGAATC+TGG | - | chr8.4:19340539-19340558 | None:intergenic | 30.0% | |
| TAGTTGGTTATGCTATGATA+TGG | + | chr8.4:19341214-19341233 | MS.gene51051:intron | 30.0% | |
| TGACACTATGAAAGAAATTG+GGG | + | chr8.4:19341662-19341681 | MS.gene51051:CDS | 30.0% | |
| TGTTCTCATTGCAGTAATTA+GGG | + | chr8.4:19340639-19340658 | MS.gene51051:intron | 30.0% | |
| TTACAAACTTAGCAACACAA+GGG | + | chr8.4:19340512-19340531 | MS.gene51051:CDS | 30.0% | |
| TTTACAAACTTAGCAACACA+AGG | + | chr8.4:19340511-19340530 | MS.gene51051:CDS | 30.0% | |
| TTTGTTACATGTAAGACGTA+CGG | - | chr8.4:19341073-19341092 | None:intergenic | 30.0% | |
| ! | AATTTTGCAGCAAAAGACTT+AGG | - | chr8.4:19341149-19341168 | None:intergenic | 30.0% |
| ATATGGTAATCCAAGAGCAA+AGG | - | chr8.4:19341383-19341402 | None:intergenic | 35.0% | |
| ATCCATGTGATTGATAAGCA+TGG | - | chr8.4:19340202-19340221 | None:intergenic | 35.0% | |
| CCAAATATATCCTTTGCTCT+TGG | + | chr8.4:19341370-19341389 | MS.gene51051:intron | 35.0% | |
| CCAAGAGCAAAGGATATATT+TGG | - | chr8.4:19341373-19341392 | None:intergenic | 35.0% | |
| GCTATGAATGAAATCAATGC+TGG | + | chr8.4:19340895-19340914 | MS.gene51051:CDS | 35.0% | |
| TAACAAACCAACCTTTGTCT+TGG | - | chr8.4:19340140-19340159 | None:intergenic | 35.0% | |
| TAACTTTGAATCGTCTCAAC+AGG | + | chr8.4:19340798-19340817 | MS.gene51051:intron | 35.0% | |
| TACAAACTTAGCAACACAAG+GGG | + | chr8.4:19340513-19340532 | MS.gene51051:CDS | 35.0% | |
| TATATTTGGCACATAGCACT+CGG | - | chr8.4:19341359-19341378 | None:intergenic | 35.0% | |
| TCACATGGATACTTTCTCTT+TGG | + | chr8.4:19340212-19340231 | MS.gene51051:intron | 35.0% | |
| TGCAAAAGATGTCATGGATA+TGG | + | chr8.4:19341620-19341639 | MS.gene51051:CDS | 35.0% | |
| TGCATGTTTATTGCTAAGCA+GGG | - | chr8.4:19340578-19340597 | None:intergenic | 35.0% | |
| TGTGATTGATAAGCATGGAA+TGG | - | chr8.4:19340197-19340216 | None:intergenic | 35.0% | |
| TTCCATGCTTATCAATCACA+TGG | + | chr8.4:19340197-19340216 | MS.gene51051:intron | 35.0% | |
| TTGCATGTTTATTGCTAAGC+AGG | - | chr8.4:19340579-19340598 | None:intergenic | 35.0% | |
| TTTACAGATAAGGTGAACTG+AGG | + | chr8.4:19340768-19340787 | MS.gene51051:intron | 35.0% | |
| ! | GATTTTCAGAGAATGTACCA+GGG | + | chr8.4:19341592-19341611 | MS.gene51051:CDS | 35.0% |
| ! | TATGATTAGCTGCAAGAATG+AGG | + | chr8.4:19341424-19341443 | MS.gene51051:intron | 35.0% |
| !! | GTATCATCCAAGTTGAGTTT+TGG | - | chr8.4:19340673-19340692 | None:intergenic | 35.0% |
| !! | TATACACAGAGTACTGAAAG+TGG | - | chr8.4:19340338-19340357 | None:intergenic | 35.0% |
| !! | TGTCAAAGTATTGAGTGACA+AGG | - | chr8.4:19341647-19341666 | None:intergenic | 35.0% |
| !!! | TTTTGGAATTAACTCCGGTT+TGG | + | chr8.4:19341171-19341190 | MS.gene51051:intron | 35.0% |
| AAGACGTACGGTAAGGAAAA+AGG | - | chr8.4:19341061-19341080 | None:intergenic | 40.0% | |
| AAGACTTAGGATCAGATGCT+TGG | - | chr8.4:19341136-19341155 | None:intergenic | 40.0% | |
| AATATTGTGGGGACATCTCA+TGG | - | chr8.4:19340936-19340955 | None:intergenic | 40.0% | |
| AATGAACACAGCAGAAGACT+TGG | - | chr8.4:19341694-19341713 | None:intergenic | 40.0% | |
| ATGGATACTTTCTCTTTGGC+CGG | + | chr8.4:19340216-19340235 | MS.gene51051:intron | 40.0% | |
| CAAATGTGAGACCAAGACAA+AGG | + | chr8.4:19340126-19340145 | MS.gene51051:CDS | 40.0% | |
| CAGTGTTCCAAAACTCAACT+TGG | + | chr8.4:19340663-19340682 | MS.gene51051:CDS | 40.0% | |
| CATGGAATGGCATGAAGATT+TGG | - | chr8.4:19340184-19340203 | None:intergenic | 40.0% | |
| CTCAAAGAAGCAAACCAAAC+CGG | - | chr8.4:19341188-19341207 | None:intergenic | 40.0% | |
| CTGAGTCTAAATATCTCGCT+GGG | + | chr8.4:19341511-19341530 | MS.gene51051:CDS | 40.0% | |
| GACAAGTGCAAAAGATGTCA+TGG | + | chr8.4:19341614-19341633 | MS.gene51051:CDS | 40.0% | |
| TACATGTAAGACGTACGGTA+AGG | - | chr8.4:19341068-19341087 | None:intergenic | 40.0% | |
| TCTAAATATCTCGCTGGGAT+GGG | + | chr8.4:19341516-19341535 | MS.gene51051:CDS | 40.0% | |
| TCTCAAGTGGCTATGAAAGA+AGG | + | chr8.4:19339995-19340014 | MS.gene51051:CDS | 40.0% | |
| TCTTGCAGCTAATCATAGAC+AGG | - | chr8.4:19341421-19341440 | None:intergenic | 40.0% | |
| TGTGGAAGAAGAACTTGAGA+AGG | + | chr8.4:19340723-19340742 | MS.gene51051:CDS | 40.0% | |
| TTCCTTGGAAAACGAATTGC+TGG | + | chr8.4:19340070-19340089 | MS.gene51051:CDS | 40.0% | |
| TTCTATTCAATACCGTGCCT+TGG | + | chr8.4:19340467-19340486 | MS.gene51051:CDS | 40.0% | |
| ! | ATTCGTTTTCCAAGGAACCA+TGG | - | chr8.4:19340067-19340086 | None:intergenic | 40.0% |
| ! | GGATTTTCAGAGAATGTACC+AGG | + | chr8.4:19341591-19341610 | MS.gene51051:CDS | 40.0% |
| ! | GTGGCTATGAAAGAAGGTTT+TGG | + | chr8.4:19340001-19340020 | MS.gene51051:CDS | 40.0% |
| !! | ATTTGAAAAGGTGCTTCAGC+CGG | + | chr8.4:19340027-19340046 | MS.gene51051:CDS | 40.0% |
| !! | CTTCTTTGAGGTCCAATAGT+TGG | + | chr8.4:19341198-19341217 | MS.gene51051:intron | 40.0% |
| !! | GCAAGTTGATCAATCTCAAG+TGG | + | chr8.4:19339982-19340001 | MS.gene51051:CDS | 40.0% |
| !!! | CAAGTTGAGTTTTGGAACAC+TGG | - | chr8.4:19340665-19340684 | None:intergenic | 40.0% |
| ACTCATGAGTTAGAGAACCC+TGG | - | chr8.4:19341773-19341792 | None:intergenic | 45.0% | |
| CAACAGGCTATGTCAGCTTA+TGG | + | chr8.4:19340814-19340833 | MS.gene51051:intron | 45.0% | |
| CGTACGGTAAGGAAAAAGGT+AGG | - | chr8.4:19341057-19341076 | None:intergenic | 45.0% | |
| GCCAGATAAGCATGTGAAGA+AGG | + | chr8.4:19340873-19340892 | MS.gene51051:CDS | 45.0% | |
| GCCTTCTTCACATGCTTATC+TGG | - | chr8.4:19340877-19340896 | None:intergenic | 45.0% | |
| GCTGAGTCTAAATATCTCGC+TGG | + | chr8.4:19341510-19341529 | MS.gene51051:CDS | 45.0% | |
| GGAGAAGTCCATCACGAATT+TGG | - | chr8.4:19341752-19341771 | None:intergenic | 45.0% | |
| GGATTGAGAGACAGTGTGAT+TGG | + | chr8.4:19341570-19341589 | MS.gene51051:CDS | 45.0% | |
| GTCTAAATATCTCGCTGGGA+TGG | + | chr8.4:19341515-19341534 | MS.gene51051:CDS | 45.0% | |
| GTCTCTCAATCCATCCACAA+TGG | - | chr8.4:19341562-19341581 | None:intergenic | 45.0% | |
| GTTGCTAGCCAAATTCGTGA+TGG | + | chr8.4:19341741-19341760 | MS.gene51051:CDS | 45.0% | |
| TCTGCTGTGTTCATTCCACA+TGG | + | chr8.4:19341699-19341718 | MS.gene51051:CDS | 45.0% | |
| TGGATACTTTCTCTTTGGCC+GGG | + | chr8.4:19340217-19340236 | MS.gene51051:intron | 45.0% | |
| TGTGAGACCAAGACAAAGGT+TGG | + | chr8.4:19340130-19340149 | MS.gene51051:intron | 45.0% | |
| TTGCAAATAAAGCGAGCCGA+GGG | + | chr8.4:19341483-19341502 | MS.gene51051:CDS | 45.0% | |
| TTGCTGGTCATCTCTCTCTT+CGG | + | chr8.4:19340086-19340105 | MS.gene51051:CDS | 45.0% | |
| ! | ACATCTTTTGCACTTGTCCC+TGG | - | chr8.4:19341612-19341631 | None:intergenic | 45.0% |
| ! | CTCTCTTCGGGTTCAACAAT+TGG | + | chr8.4:19340099-19340118 | MS.gene51051:CDS | 45.0% |
| ! | GACCAGCAATTCGTTTTCCA+AGG | - | chr8.4:19340075-19340094 | None:intergenic | 45.0% |
| !! | AATTCGTGATGGACTTCTCC+AGG | + | chr8.4:19341752-19341771 | MS.gene51051:CDS | 45.0% |
| !! | ATCGTTTGCCTTGTTTGCCA+AGG | - | chr8.4:19340487-19340506 | None:intergenic | 45.0% |
| !! | ATTCGTGATGGACTTCTCCA+GGG | + | chr8.4:19341753-19341772 | MS.gene51051:CDS | 45.0% |
| !! | CGGTTTGGTTTGCTTCTTTG+AGG | + | chr8.4:19341186-19341205 | MS.gene51051:intron | 45.0% |
| !! | TTTGAAAAGGTGCTTCAGCC+GGG | + | chr8.4:19340028-19340047 | MS.gene51051:CDS | 45.0% |
| ATACCGTGCCTTGGCAAACA+AGG | + | chr8.4:19340476-19340495 | MS.gene51051:CDS | 50.0% | |
| CAACGTCAAGCCATTGTGGA+TGG | + | chr8.4:19341549-19341568 | MS.gene51051:CDS | 50.0% | |
| CAAGGAACCATGGCATGCAA+TGG | - | chr8.4:19340057-19340076 | None:intergenic | 50.0% | |
| CATTGCATGCCATGGTTCCT+TGG | + | chr8.4:19340055-19340074 | MS.gene51051:CDS | 50.0% | |
| CTTGCAAATAAAGCGAGCCG+AGG | + | chr8.4:19341482-19341501 | MS.gene51051:CDS | 50.0% | |
| GAACACAGCAGAAGACTTGG+AGG | - | chr8.4:19341691-19341710 | None:intergenic | 50.0% | |
| GAGGATCGCAGCTAATGAGA+AGG | + | chr8.4:19341443-19341462 | MS.gene51051:CDS | 50.0% | |
| GTGTTCATTCCACATGGACC+TGG | + | chr8.4:19341705-19341724 | MS.gene51051:CDS | 50.0% | |
| TCGTCAACGTCAAGCCATTG+TGG | + | chr8.4:19341545-19341564 | MS.gene51051:CDS | 50.0% | |
| TGCTGGTCATCTCTCTCTTC+GGG | + | chr8.4:19340087-19340106 | MS.gene51051:CDS | 50.0% | |
| TTTAGACTCAGCCTCACCCT+CGG | - | chr8.4:19341502-19341521 | None:intergenic | 50.0% | |
| !! | TTGCCTTGTTTGCCAAGGCA+CGG | - | chr8.4:19340482-19340501 | None:intergenic | 50.0% |
| AATAAAGCGAGCCGAGGGTG+AGG | + | chr8.4:19341488-19341507 | MS.gene51051:CDS | 55.0% | |
| CATGGCATGCAATGGCATCC+CGG | - | chr8.4:19340049-19340068 | None:intergenic | 55.0% | |
| CGAACAGCACCAGGTCCATG+TGG | - | chr8.4:19341717-19341736 | None:intergenic | 60.0% | |
| CGGGATGCCATTGCATGCCA+TGG | + | chr8.4:19340047-19340066 | MS.gene51051:CDS | 60.0% | |
| GCAACATCGCGAACAGCACC+AGG | - | chr8.4:19341726-19341745 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 19339959 | 19341794 | 19339959 | ID=MS.gene51051 |
| chr8.4 | mRNA | 19339959 | 19341794 | 19339959 | ID=MS.gene51051.t1;Parent=MS.gene51051 |
| chr8.4 | exon | 19339959 | 19340147 | 19339959 | ID=MS.gene51051.t1.exon1;Parent=MS.gene51051.t1 |
| chr8.4 | CDS | 19339959 | 19340147 | 19339959 | ID=cds.MS.gene51051.t1;Parent=MS.gene51051.t1 |
| chr8.4 | exon | 19340441 | 19340561 | 19340441 | ID=MS.gene51051.t1.exon2;Parent=MS.gene51051.t1 |
| chr8.4 | CDS | 19340441 | 19340561 | 19340441 | ID=cds.MS.gene51051.t1;Parent=MS.gene51051.t1 |
| chr8.4 | exon | 19340653 | 19340744 | 19340653 | ID=MS.gene51051.t1.exon3;Parent=MS.gene51051.t1 |
| chr8.4 | CDS | 19340653 | 19340744 | 19340653 | ID=cds.MS.gene51051.t1;Parent=MS.gene51051.t1 |
| chr8.4 | exon | 19340820 | 19340916 | 19340820 | ID=MS.gene51051.t1.exon4;Parent=MS.gene51051.t1 |
| chr8.4 | CDS | 19340820 | 19340916 | 19340820 | ID=cds.MS.gene51051.t1;Parent=MS.gene51051.t1 |
| chr8.4 | exon | 19341433 | 19341794 | 19341433 | ID=MS.gene51051.t1.exon5;Parent=MS.gene51051.t1 |
| chr8.4 | CDS | 19341433 | 19341794 | 19341433 | ID=cds.MS.gene51051.t1;Parent=MS.gene51051.t1 |
| Gene Sequence |
| Protein sequence |
