Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51093.t1 | XP_003616715.1 | 98.9 | 263 | 3 | 0 | 1 | 263 | 234 | 496 | 4.60E-150 | 540.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51093.t1 | G7K793 | 98.9 | 263 | 3 | 0 | 1 | 263 | 234 | 496 | 3.3e-150 | 540.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049254 | MS.gene51093 | 0.809519 | 1.82E-50 | -1.69E-46 |
| MS.gene049283 | MS.gene51093 | 0.802078 | 6.65E-49 | -1.69E-46 |
| MS.gene051332 | MS.gene51093 | 0.813053 | 3.11E-51 | -1.69E-46 |
| MS.gene051363 | MS.gene51093 | 0.800877 | 1.17E-48 | -1.69E-46 |
| MS.gene052108 | MS.gene51093 | 0.80918 | 2.15E-50 | -1.69E-46 |
| MS.gene052463 | MS.gene51093 | 0.817609 | 3.02E-52 | -1.69E-46 |
| MS.gene052534 | MS.gene51093 | 0.802171 | 6.37E-49 | -1.69E-46 |
| MS.gene052954 | MS.gene51093 | 0.807816 | 4.20E-50 | -1.69E-46 |
| MS.gene054479 | MS.gene51093 | 0.803885 | 2.82E-49 | -1.69E-46 |
| MS.gene054651 | MS.gene51093 | 0.81657 | 5.17E-52 | -1.69E-46 |
| MS.gene055841 | MS.gene51093 | 0.802216 | 6.23E-49 | -1.69E-46 |
| MS.gene057034 | MS.gene51093 | 0.806277 | 8.89E-50 | -1.69E-46 |
| MS.gene057102 | MS.gene51093 | 0.806406 | 8.35E-50 | -1.69E-46 |
| MS.gene057208 | MS.gene51093 | 0.858782 | 6.50E-63 | -1.69E-46 |
| MS.gene058008 | MS.gene51093 | 0.800272 | 1.56E-48 | -1.69E-46 |
| MS.gene05985 | MS.gene51093 | -0.807245 | 5.55E-50 | -1.69E-46 |
| MS.gene060365 | MS.gene51093 | 0.804418 | 2.18E-49 | -1.69E-46 |
| MS.gene060935 | MS.gene51093 | 0.833107 | 6.45E-56 | -1.69E-46 |
| MS.gene060937 | MS.gene51093 | 0.835658 | 1.48E-56 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51093.t1 | MTR_5g083500 | 98.859 | 263 | 3 | 0 | 1 | 263 | 234 | 496 | 0.0 | 548 |
| MS.gene51093.t1 | MTR_3g071950 | 75.573 | 262 | 62 | 2 | 1 | 262 | 235 | 494 | 1.24e-145 | 417 |
| MS.gene51093.t1 | MTR_1g107165 | 32.558 | 258 | 159 | 5 | 10 | 262 | 271 | 518 | 8.04e-39 | 142 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene51093.t1 | AT2G40390 | 61.597 | 263 | 101 | 0 | 1 | 263 | 234 | 496 | 7.13e-120 | 352 |
| MS.gene51093.t1 | AT5G64190 | 62.357 | 263 | 97 | 2 | 1 | 262 | 241 | 502 | 5.73e-114 | 337 |
| MS.gene51093.t1 | AT5G64190 | 62.357 | 263 | 97 | 2 | 1 | 262 | 240 | 501 | 7.06e-114 | 337 |
| MS.gene51093.t1 | AT2G15020 | 29.845 | 258 | 155 | 4 | 15 | 262 | 281 | 522 | 4.02e-33 | 126 |
Find 61 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCATGCCTATTTCCATTAT+TGG | 0.166320 | 5.1:-65801357 | None:intergenic |
| AACTAGGAGGTTGGAGTTTA+GGG | 0.189509 | 5.1:+65801794 | MS.gene51093:CDS |
| AAATTTGAAGAATCGGTTTA+TGG | 0.202767 | 5.1:+65801474 | MS.gene51093:CDS |
| AGATTATGGAATGGGAAATT+AGG | 0.215093 | 5.1:+65801718 | MS.gene51093:CDS |
| GTTATAGTGCAAATTTAAAT+TGG | 0.227636 | 5.1:+65801496 | MS.gene51093:CDS |
| AAACTAGGAGGTTGGAGTTT+AGG | 0.246270 | 5.1:+65801793 | MS.gene51093:CDS |
| GGGAAATTAGGGGTTGGATA+TGG | 0.296559 | 5.1:+65801730 | MS.gene51093:CDS |
| ACCCCACCTTGTCTAGTAAA+AGG | 0.303601 | 5.1:-65801630 | None:intergenic |
| GAAAATCCAATAATGGAAAT+AGG | 0.304600 | 5.1:+65801351 | MS.gene51093:CDS |
| CTAAGTCTTGGTTTAGAGAT+AGG | 0.319369 | 5.1:+65801589 | MS.gene51093:CDS |
| GACCCACTTCTCCTTGATAA+AGG | 0.322270 | 5.1:-65800107 | None:intergenic |
| GATTATGGAATGGGAAATTA+GGG | 0.322963 | 5.1:+65801719 | MS.gene51093:CDS |
| CAGCTCCTCTTTCATTCATA+AGG | 0.338915 | 5.1:-65801233 | None:intergenic |
| TTGGTTTCTTCATGATAGTA+TGG | 0.340285 | 5.1:+65801515 | MS.gene51093:CDS |
| AAGTGCTAGAGGGAAGATTA+TGG | 0.342959 | 5.1:+65801704 | MS.gene51093:CDS |
| TAGAATGTCCTATACTTATT+AGG | 0.345792 | 5.1:-65801765 | None:intergenic |
| ATCCTCAGAAAATCCAATAA+TGG | 0.359644 | 5.1:+65801344 | MS.gene51093:CDS |
| CTTATTTGCCTAATAAGTAT+AGG | 0.370748 | 5.1:+65801757 | MS.gene51093:CDS |
| TCTCCTTGATAAAGGCTTTG+TGG | 0.379047 | 5.1:-65800099 | None:intergenic |
| CTCAAATATCAACAACTTGA+AGG | 0.385045 | 5.1:+65800061 | MS.gene51093:CDS |
| GCCTTGGAAATTTGAAGAAT+CGG | 0.401479 | 5.1:+65801467 | MS.gene51093:CDS |
| ACTCCAACCTCCTAGTTTCA+TGG | 0.411113 | 5.1:-65801788 | None:intergenic |
| CAACAATGAGTTTAAAGCCT+TGG | 0.411370 | 5.1:+65801451 | MS.gene51093:CDS |
| AGCCCTATGTAGGGATTTGT+TGG | 0.418015 | 5.1:-65801405 | None:intergenic |
| AGCTCCTCTTTCATTCATAA+GGG | 0.447164 | 5.1:-65801232 | None:intergenic |
| TGGTGAACATTGACAACATA+AGG | 0.454093 | 5.1:+65800137 | MS.gene51093:CDS |
| CTATCTCTAAACCAAGACTT+AGG | 0.456609 | 5.1:-65801588 | None:intergenic |
| AATTAATTAACCCTAAGTCT+TGG | 0.472762 | 5.1:+65801577 | MS.gene51093:CDS |
| TAGAGGGAAGATTATGGAAT+GGG | 0.487526 | 5.1:+65801710 | MS.gene51093:CDS |
| GGAGAAGTGGGTCGAAATCA+TGG | 0.504586 | 5.1:+65800117 | MS.gene51093:CDS |
| CAACCAACAAATCCCTACAT+AGG | 0.511769 | 5.1:+65801402 | MS.gene51093:CDS |
| CAACCACAAAGCCTTTATCA+AGG | 0.513836 | 5.1:+65800096 | MS.gene51093:CDS |
| ACCGATTCTTCAAATTTCCA+AGG | 0.517511 | 5.1:-65801468 | None:intergenic |
| TTTCTTCATGATAGTATGGA+TGG | 0.518404 | 5.1:+65801519 | MS.gene51093:CDS |
| AGGCTTTAAACTCATTGTTG+TGG | 0.521841 | 5.1:-65801448 | None:intergenic |
| ATAGGGCTCAACGTATCAGC+TGG | 0.526734 | 5.1:+65801420 | MS.gene51093:CDS |
| CAAGTATTAAGTGTATCGGT+TGG | 0.527119 | 5.1:+65801318 | MS.gene51093:CDS |
| AGTTGCAATGATATTCTTGA+TGG | 0.528882 | 5.1:-65801276 | None:intergenic |
| TCCAATAATGGAAATAGGCA+TGG | 0.529685 | 5.1:+65801356 | MS.gene51093:CDS |
| TGATACGTTGAGCCCTATGT+AGG | 0.533661 | 5.1:-65801415 | None:intergenic |
| GACACCCTTATGAATGAAAG+AGG | 0.534438 | 5.1:+65801228 | MS.gene51093:CDS |
| ATACACTTAATACTTGATGT+TGG | 0.534811 | 5.1:-65801311 | None:intergenic |
| TATCTCTAAACCAAGACTTA+GGG | 0.543035 | 5.1:-65801587 | None:intergenic |
| CTTATGAATGAAAGAGGAGC+TGG | 0.553722 | 5.1:+65801234 | MS.gene51093:CDS |
| AATACTTGATGTTGGAGTGT+TGG | 0.554791 | 5.1:-65801303 | None:intergenic |
| CTACCATGAAACTAGGAGGT+TGG | 0.561866 | 5.1:+65801785 | MS.gene51093:CDS |
| AAGCCTTTATCAAGGAGAAG+TGG | 0.567695 | 5.1:+65800104 | MS.gene51093:CDS |
| TGGAATGGGAAATTAGGGGT+TGG | 0.568241 | 5.1:+65801724 | MS.gene51093:CDS |
| GGACATTCTACCATGAAACT+AGG | 0.571006 | 5.1:+65801778 | MS.gene51093:CDS |
| AACCAACAAATCCCTACATA+GGG | 0.573510 | 5.1:+65801403 | MS.gene51093:CDS |
| AAAGTTGATAAAAGTGCTAG+AGG | 0.576839 | 5.1:+65801693 | MS.gene51093:CDS |
| ACATCAAGTATTAAGTGTAT+CGG | 0.584483 | 5.1:+65801314 | MS.gene51093:CDS |
| CTAGAGGGAAGATTATGGAA+TGG | 0.593772 | 5.1:+65801709 | MS.gene51093:CDS |
| GATACGTTGAGCCCTATGTA+GGG | 0.594917 | 5.1:-65801414 | None:intergenic |
| TAAGCTAAGGAATATTGAGA+TGG | 0.598868 | 5.1:-65801824 | None:intergenic |
| AGCCTTTATCAAGGAGAAGT+GGG | 0.606851 | 5.1:+65800105 | MS.gene51093:CDS |
| AAGTTGATAAAAGTGCTAGA+GGG | 0.617052 | 5.1:+65801694 | MS.gene51093:CDS |
| GTTGCAATGATATTCTTGAT+GGG | 0.617241 | 5.1:-65801275 | None:intergenic |
| AATATGGAGAAAGTGTGTGT+TGG | 0.621471 | 5.1:+65801670 | MS.gene51093:CDS |
| CATTCTACCATGAAACTAGG+AGG | 0.670138 | 5.1:+65801781 | MS.gene51093:CDS |
| ATTATGGAATGGGAAATTAG+GGG | 0.711741 | 5.1:+65801720 | MS.gene51093:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATGTAAAATATAGTATA+AGG | + | chr5.1:65800537-65800556 | MS.gene51093:intron | 10.0% |
| !! | AAATGTAAAATATAGTATAA+GGG | + | chr5.1:65800538-65800557 | MS.gene51093:intron | 10.0% |
| !! | ATTGAATATTTAAATTTCTT+TGG | + | chr5.1:65801176-65801195 | MS.gene51093:intron | 10.0% |
| !!! | TTAATTAATTCAAATTTTGA+TGG | - | chr5.1:65801567-65801586 | None:intergenic | 10.0% |
| !! | AATTTAATTCTATCTTGAAA+AGG | - | chr5.1:65800206-65800225 | None:intergenic | 15.0% |
| !! | AGTAATTAATTGTTAGTATT+AGG | - | chr5.1:65800351-65800370 | None:intergenic | 15.0% |
| !! | ATAAACTTGAAAATATCATA+TGG | + | chr5.1:65800583-65800602 | MS.gene51093:intron | 15.0% |
| !! | TAAACTTGAAAATATCATAT+GGG | + | chr5.1:65800584-65800603 | MS.gene51093:intron | 15.0% |
| !!! | AAATGTTTTATATTTAGAGA+CGG | - | chr5.1:65800378-65800397 | None:intergenic | 15.0% |
| !!! | AGAATTTTTATTTGTAGAAA+GGG | - | chr5.1:65801062-65801081 | None:intergenic | 15.0% |
| !!! | CTCTAAATATAAAACATTTT+TGG | + | chr5.1:65800379-65800398 | MS.gene51093:intron | 15.0% |
| !! | GTTATAGTGCAAATTTAAAT+TGG | + | chr5.1:65801496-65801515 | MS.gene51093:CDS | 20.0% |
| !! | TTCTACAAATAAAAATTCTG+TGG | + | chr5.1:65801063-65801082 | MS.gene51093:intron | 20.0% |
| !!! | AAACTAACTCTCTTTTTTAA+AGG | - | chr5.1:65800480-65800499 | None:intergenic | 20.0% |
| !!! | AGAGAAAAAAAAATCCTTTT+AGG | - | chr5.1:65800243-65800262 | None:intergenic | 20.0% |
| !!! | ATATTTGTTTAGTTTTAGAG+TGG | + | chr5.1:65800977-65800996 | MS.gene51093:intron | 20.0% |
| !!! | CAGAATTTTTATTTGTAGAA+AGG | - | chr5.1:65801063-65801082 | None:intergenic | 20.0% |
| !!! | CTCTTTTTTAAAGGATAAAA+TGG | - | chr5.1:65800471-65800490 | None:intergenic | 20.0% |
| !!! | TATTTGTTTAGTTTTAGAGT+GGG | + | chr5.1:65800978-65800997 | MS.gene51093:intron | 20.0% |
| !!! | TCGAAAGGATTTTATAATTA+GGG | + | chr5.1:65800634-65800653 | MS.gene51093:intron | 20.0% |
| !!! | TTTTCTCTGGATTTTTTTAA+TGG | - | chr5.1:65800324-65800343 | None:intergenic | 20.0% |
| ! | AAGAATCAAAACAAAAGAGA+GGG | - | chr5.1:65800956-65800975 | None:intergenic | 25.0% |
| ! | AATTAATTAACCCTAAGTCT+TGG | + | chr5.1:65801577-65801596 | MS.gene51093:CDS | 25.0% |
| ! | ACATCAAGTATTAAGTGTAT+CGG | + | chr5.1:65801314-65801333 | MS.gene51093:CDS | 25.0% |
| ! | AGAAAAAGTAGAGATTTGAT+TGG | - | chr5.1:65800898-65800917 | None:intergenic | 25.0% |
| ! | ATACACTTAATACTTGATGT+TGG | - | chr5.1:65801314-65801333 | None:intergenic | 25.0% |
| ! | ATACTCGTTGTACTTAAATT+TGG | + | chr5.1:65801005-65801024 | MS.gene51093:intron | 25.0% |
| ! | ATCACGAAAATTAAGAAAGT+TGG | + | chr5.1:65800406-65800425 | MS.gene51093:intron | 25.0% |
| ! | CACATACATCATTTATTGAA+TGG | - | chr5.1:65800823-65800804 | None:intergenic | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | + | chr5.1:65800767-65800786 | MS.gene51093:intron | 25.0% |
| ! | CATTCAATAAATGATGTATG+TGG | - | chr5.1:65800786-65800767 | None:intergenic | 25.0% |
| ! | CTTATTTGCCTAATAAGTAT+AGG | + | chr5.1:65801757-65801776 | MS.gene51093:CDS | 25.0% |
| ! | TAAGAATCAAAACAAAAGAG+AGG | - | chr5.1:65800957-65800976 | None:intergenic | 25.0% |
| ! | TAGAATGTCCTATACTTATT+AGG | - | chr5.1:65801768-65801787 | None:intergenic | 25.0% |
| ! | TATTGAATGGATCTAAAAAG+TGG | - | chr5.1:65800756-65800775 | None:intergenic | 25.0% |
| !! | AAATTTGAAGAATCGGTTTA+TGG | + | chr5.1:65801474-65801493 | MS.gene51093:CDS | 25.0% |
| !! | AATATAGTATAAGGGTATGT+TGG | + | chr5.1:65800546-65800565 | MS.gene51093:intron | 25.0% |
| !! | AATTTGCTTATAATAGTGAC+CGG | - | chr5.1:65800732-65800751 | None:intergenic | 25.0% |
| !! | ATCATATGGGTCTTATAAAA+AGG | + | chr5.1:65800597-65800616 | MS.gene51093:intron | 25.0% |
| !! | CTCGAAAGGATTTTATAATT+AGG | + | chr5.1:65800633-65800652 | MS.gene51093:intron | 25.0% |
| !! | CTTTCTTAATTTTCGTGATT+TGG | - | chr5.1:65800405-65800424 | None:intergenic | 25.0% |
| !! | GAAAATCCAATAATGGAAAT+AGG | + | chr5.1:65801351-65801370 | MS.gene51093:CDS | 25.0% |
| !! | TCATATGGGTCTTATAAAAA+GGG | + | chr5.1:65800598-65800617 | MS.gene51093:intron | 25.0% |
| !!! | AAAAATCCTTTTAGGTTTGA+TGG | - | chr5.1:65800235-65800254 | None:intergenic | 25.0% |
| !!! | AGTATTAGGTTTTTTTTCTC+TGG | - | chr5.1:65800337-65800356 | None:intergenic | 25.0% |
| AGATTATGGAATGGGAAATT+AGG | + | chr5.1:65801718-65801737 | MS.gene51093:CDS | 30.0% | |
| AGTTGCAATGATATTCTTGA+TGG | - | chr5.1:65801279-65801298 | None:intergenic | 30.0% | |
| ATCCTCAGAAAATCCAATAA+TGG | + | chr5.1:65801344-65801363 | MS.gene51093:CDS | 30.0% | |
| ATGTTTCCATCAAACCTAAA+AGG | + | chr5.1:65800226-65800245 | MS.gene51093:intron | 30.0% | |
| ATTATGGAATGGGAAATTAG+GGG | + | chr5.1:65801720-65801739 | MS.gene51093:CDS | 30.0% | |
| CTCAAATATCAACAACTTGA+AGG | + | chr5.1:65800061-65800080 | MS.gene51093:CDS | 30.0% | |
| GATTATGGAATGGGAAATTA+GGG | + | chr5.1:65801719-65801738 | MS.gene51093:CDS | 30.0% | |
| GTTGCAATGATATTCTTGAT+GGG | - | chr5.1:65801278-65801297 | None:intergenic | 30.0% | |
| TAAGTAATTAATACTCCCTC+CGG | + | chr5.1:65800710-65800729 | MS.gene51093:intron | 30.0% | |
| TATCTCTAAACCAAGACTTA+GGG | - | chr5.1:65801590-65801609 | None:intergenic | 30.0% | |
| TGCTTATAATAATGACCAGA+TGG | + | chr5.1:65800845-65800864 | MS.gene51093:intron | 30.0% | |
| TTAAAAGAACATACTCCATC+TGG | - | chr5.1:65800863-65800882 | None:intergenic | 30.0% | |
| TTGGTTTCTTCATGATAGTA+TGG | + | chr5.1:65801515-65801534 | MS.gene51093:CDS | 30.0% | |
| TTTCTTCATGATAGTATGGA+TGG | + | chr5.1:65801519-65801538 | MS.gene51093:CDS | 30.0% | |
| ! | TGTTTTATATTTAGAGACGG+AGG | - | chr5.1:65800375-65800394 | None:intergenic | 30.0% |
| ! | TTCCATTATTGGATTTTCTG+AGG | - | chr5.1:65801349-65801368 | None:intergenic | 30.0% |
| !! | AAAGTTGATAAAAGTGCTAG+AGG | + | chr5.1:65801693-65801712 | MS.gene51093:CDS | 30.0% |
| !! | AAGTTGATAAAAGTGCTAGA+GGG | + | chr5.1:65801694-65801713 | MS.gene51093:CDS | 30.0% |
| !! | ATTTTTGCTGGTGATGAATA+TGG | + | chr5.1:65801654-65801673 | MS.gene51093:CDS | 30.0% |
| AACCAACAAATCCCTACATA+GGG | + | chr5.1:65801403-65801422 | MS.gene51093:CDS | 35.0% | |
| AATACTTGATGTTGGAGTGT+TGG | - | chr5.1:65801306-65801325 | None:intergenic | 35.0% | |
| AGCTCCTCTTTCATTCATAA+GGG | - | chr5.1:65801235-65801254 | None:intergenic | 35.0% | |
| CTAAGTCTTGGTTTAGAGAT+AGG | + | chr5.1:65801589-65801608 | MS.gene51093:CDS | 35.0% | |
| CTATCTCTAAACCAAGACTT+AGG | - | chr5.1:65801591-65801610 | None:intergenic | 35.0% | |
| GCCTTGGAAATTTGAAGAAT+CGG | + | chr5.1:65801467-65801486 | MS.gene51093:CDS | 35.0% | |
| TAGAGGGAAGATTATGGAAT+GGG | + | chr5.1:65801710-65801729 | MS.gene51093:CDS | 35.0% | |
| TCCATGCCTATTTCCATTAT+TGG | - | chr5.1:65801360-65801379 | None:intergenic | 35.0% | |
| TGGTGAACATTGACAACATA+AGG | + | chr5.1:65800137-65800156 | MS.gene51093:CDS | 35.0% | |
| ! | AATATGGAGAAAGTGTGTGT+TGG | + | chr5.1:65801670-65801689 | MS.gene51093:CDS | 35.0% |
| ! | ACCGATTCTTCAAATTTCCA+AGG | - | chr5.1:65801471-65801490 | None:intergenic | 35.0% |
| ! | CAACAATGAGTTTAAAGCCT+TGG | + | chr5.1:65801451-65801470 | MS.gene51093:CDS | 35.0% |
| ! | CAAGTATTAAGTGTATCGGT+TGG | + | chr5.1:65801318-65801337 | MS.gene51093:CDS | 35.0% |
| ! | TATCGTCCTTTTACTAGACA+AGG | + | chr5.1:65801624-65801643 | MS.gene51093:CDS | 35.0% |
| ! | TCCAATAATGGAAATAGGCA+TGG | + | chr5.1:65801356-65801375 | MS.gene51093:CDS | 35.0% |
| !! | AGGCTTTAAACTCATTGTTG+TGG | - | chr5.1:65801451-65801470 | None:intergenic | 35.0% |
| !!! | GGACTCATTTTTTTCTCGAA+AGG | + | chr5.1:65800619-65800638 | MS.gene51093:intron | 35.0% |
| AAACTAGGAGGTTGGAGTTT+AGG | + | chr5.1:65801793-65801812 | MS.gene51093:CDS | 40.0% | |
| AACTAGGAGGTTGGAGTTTA+GGG | + | chr5.1:65801794-65801813 | MS.gene51093:CDS | 40.0% | |
| AAGCCTTTATCAAGGAGAAG+TGG | + | chr5.1:65800104-65800123 | MS.gene51093:CDS | 40.0% | |
| AAGTGCTAGAGGGAAGATTA+TGG | + | chr5.1:65801704-65801723 | MS.gene51093:CDS | 40.0% | |
| AGCCTTTATCAAGGAGAAGT+GGG | + | chr5.1:65800105-65800124 | MS.gene51093:CDS | 40.0% | |
| ATGTTCGTACGTATTACGAG+TGG | + | chr5.1:65800922-65800941 | MS.gene51093:intron | 40.0% | |
| CAACCAACAAATCCCTACAT+AGG | + | chr5.1:65801402-65801421 | MS.gene51093:CDS | 40.0% | |
| CAACCACAAAGCCTTTATCA+AGG | + | chr5.1:65800096-65800115 | MS.gene51093:CDS | 40.0% | |
| CAGCTCCTCTTTCATTCATA+AGG | - | chr5.1:65801236-65801255 | None:intergenic | 40.0% | |
| CATTCTACCATGAAACTAGG+AGG | + | chr5.1:65801781-65801800 | MS.gene51093:CDS | 40.0% | |
| CTAGAGGGAAGATTATGGAA+TGG | + | chr5.1:65801709-65801728 | MS.gene51093:CDS | 40.0% | |
| CTTATGAATGAAAGAGGAGC+TGG | + | chr5.1:65801234-65801253 | MS.gene51093:CDS | 40.0% | |
| GACACCCTTATGAATGAAAG+AGG | + | chr5.1:65801228-65801247 | MS.gene51093:CDS | 40.0% | |
| GGACATTCTACCATGAAACT+AGG | + | chr5.1:65801778-65801797 | MS.gene51093:CDS | 40.0% | |
| TCTCCTTGATAAAGGCTTTG+TGG | - | chr5.1:65800102-65800121 | None:intergenic | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr5.1:65800728-65800747 | None:intergenic | 40.0% | |
| TGTTCGTACGTATTACGAGT+GGG | + | chr5.1:65800923-65800942 | MS.gene51093:intron | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr5.1:65800729-65800748 | None:intergenic | 40.0% | |
| ! | GTCCTTTTACTAGACAAGGT+GGG | + | chr5.1:65801628-65801647 | MS.gene51093:CDS | 40.0% |
| ! | TCCTTTTACTAGACAAGGTG+GGG | + | chr5.1:65801629-65801648 | MS.gene51093:CDS | 40.0% |
| ACCCCACCTTGTCTAGTAAA+AGG | - | chr5.1:65801633-65801652 | None:intergenic | 45.0% | |
| ACTCCAACCTCCTAGTTTCA+TGG | - | chr5.1:65801791-65801810 | None:intergenic | 45.0% | |
| AGCCCTATGTAGGGATTTGT+TGG | - | chr5.1:65801408-65801427 | None:intergenic | 45.0% | |
| CTACCATGAAACTAGGAGGT+TGG | + | chr5.1:65801785-65801804 | MS.gene51093:CDS | 45.0% | |
| GACCCACTTCTCCTTGATAA+AGG | - | chr5.1:65800110-65800129 | None:intergenic | 45.0% | |
| GATACGTTGAGCCCTATGTA+GGG | - | chr5.1:65801417-65801436 | None:intergenic | 45.0% | |
| GGGAAATTAGGGGTTGGATA+TGG | + | chr5.1:65801730-65801749 | MS.gene51093:CDS | 45.0% | |
| TGATACGTTGAGCCCTATGT+AGG | - | chr5.1:65801418-65801437 | None:intergenic | 45.0% | |
| TGGAATGGGAAATTAGGGGT+TGG | + | chr5.1:65801724-65801743 | MS.gene51093:CDS | 45.0% | |
| ! | CGTCCTTTTACTAGACAAGG+TGG | + | chr5.1:65801627-65801646 | MS.gene51093:CDS | 45.0% |
| !!! | CAAGGTGGGGTTATTTTTGC+TGG | + | chr5.1:65801642-65801661 | MS.gene51093:CDS | 45.0% |
| ATAGGGCTCAACGTATCAGC+TGG | + | chr5.1:65801420-65801439 | MS.gene51093:CDS | 50.0% | |
| GGAGAAGTGGGTCGAAATCA+TGG | + | chr5.1:65800117-65800136 | MS.gene51093:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 65800007 | 65801842 | 65800007 | ID=MS.gene51093 |
| chr5.1 | mRNA | 65800007 | 65801842 | 65800007 | ID=MS.gene51093.t1;Parent=MS.gene51093 |
| chr5.1 | exon | 65800007 | 65800158 | 65800007 | ID=MS.gene51093.t1.exon1;Parent=MS.gene51093.t1 |
| chr5.1 | CDS | 65800007 | 65800158 | 65800007 | ID=cds.MS.gene51093.t1;Parent=MS.gene51093.t1 |
| chr5.1 | exon | 65801203 | 65801842 | 65801203 | ID=MS.gene51093.t1.exon2;Parent=MS.gene51093.t1 |
| chr5.1 | CDS | 65801203 | 65801842 | 65801203 | ID=cds.MS.gene51093.t1;Parent=MS.gene51093.t1 |
| Gene Sequence |
| Protein sequence |
