Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06541.t1 | XP_013461492.1 | 99.5 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 1.50E-183 | 652.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06541.t1 | Q9ZVH8 | 48.9 | 395 | 153 | 5 | 6 | 369 | 2 | 378 | 1.1e-89 | 331.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06541.t1 | A0A072V117 | 99.5 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 1.1e-183 | 652.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene06541.t1 | TR | IWS1 |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049411 | MS.gene06541 | 0.931649 | 2.76E-94 | -1.69E-46 |
| MS.gene050689 | MS.gene06541 | 0.809755 | 1.62E-50 | -1.69E-46 |
| MS.gene051234 | MS.gene06541 | 0.830327 | 3.13E-55 | -1.69E-46 |
| MS.gene054004 | MS.gene06541 | 0.847157 | 1.38E-59 | -1.69E-46 |
| MS.gene054005 | MS.gene06541 | 0.827244 | 1.74E-54 | -1.69E-46 |
| MS.gene054142 | MS.gene06541 | 0.80474 | 1.87E-49 | -1.69E-46 |
| MS.gene055339 | MS.gene06541 | 0.852907 | 3.39E-61 | -1.69E-46 |
| MS.gene055765 | MS.gene06541 | 0.811283 | 7.57E-51 | -1.69E-46 |
| MS.gene05648 | MS.gene06541 | 0.809696 | 1.67E-50 | -1.69E-46 |
| MS.gene056693 | MS.gene06541 | 0.819755 | 9.83E-53 | -1.69E-46 |
| MS.gene057102 | MS.gene06541 | 0.805915 | 1.06E-49 | -1.69E-46 |
| MS.gene059778 | MS.gene06541 | 0.843783 | 1.13E-58 | -1.69E-46 |
| MS.gene059802 | MS.gene06541 | 0.822447 | 2.36E-53 | -1.69E-46 |
| MS.gene061100 | MS.gene06541 | 0.814286 | 1.66E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene64820 | MS.gene06541 | PPI |
| MS.gene67503 | MS.gene06541 | PPI |
| MS.gene71147 | MS.gene06541 | PPI |
| MS.gene072220 | MS.gene06541 | PPI |
| MS.gene67685 | MS.gene06541 | PPI |
| MS.gene06541 | MS.gene36746 | PPI |
| MS.gene00182 | MS.gene06541 | PPI |
| MS.gene65289 | MS.gene06541 | PPI |
| MS.gene56011 | MS.gene06541 | PPI |
| MS.gene90747 | MS.gene06541 | PPI |
| MS.gene34585 | MS.gene06541 | PPI |
| MS.gene011065 | MS.gene06541 | PPI |
| MS.gene36633 | MS.gene06541 | PPI |
| MS.gene026765 | MS.gene06541 | PPI |
| MS.gene058216 | MS.gene06541 | PPI |
| MS.gene35554 | MS.gene06541 | PPI |
| MS.gene072221 | MS.gene06541 | PPI |
| MS.gene063673 | MS.gene06541 | PPI |
| MS.gene51225 | MS.gene06541 | PPI |
| MS.gene24205 | MS.gene06541 | PPI |
| MS.gene025458 | MS.gene06541 | PPI |
| MS.gene27287 | MS.gene06541 | PPI |
| MS.gene27025 | MS.gene06541 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06541.t1 | MTR_3g093800 | 99.458 | 369 | 2 | 0 | 1 | 369 | 1 | 369 | 0.0 | 755 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene06541.t1 | AT2G38560 | 53.886 | 386 | 147 | 9 | 6 | 369 | 2 | 378 | 7.42e-119 | 349 |
| MS.gene06541.t1 | AT2G42725 | 48.031 | 127 | 65 | 1 | 189 | 314 | 104 | 230 | 7.12e-32 | 120 |
| MS.gene06541.t1 | AT4G18720 | 51.724 | 116 | 55 | 1 | 184 | 298 | 100 | 215 | 1.11e-29 | 115 |
| MS.gene06541.t1 | AT5G42325 | 40.625 | 128 | 58 | 3 | 189 | 314 | 104 | 215 | 2.76e-19 | 86.3 |
Find 88 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCGAGTTTGCATTTGGTAAT+AGG | 0.248412 | 3.2:+78685793 | None:intergenic |
| GTCCTTAATGTTTAATCTTA+AGG | 0.250681 | 3.2:-78686032 | MS.gene06541:CDS |
| ATTCAGCGCGAGACAAAATA+AGG | 0.257557 | 3.2:-78686216 | MS.gene06541:CDS |
| ATCCTTAAGATTAAACATTA+AGG | 0.282366 | 3.2:+78686030 | None:intergenic |
| ATCAGAAGAACCCTGATTTC+CGG | 0.285749 | 3.2:-78686009 | MS.gene06541:CDS |
| AGGACCTATACTTGACCTTT+TGG | 0.308451 | 3.2:+78686050 | None:intergenic |
| AGTCCGTATTATTTGAAAAC+TGG | 0.312826 | 3.2:-78686090 | MS.gene06541:CDS |
| CTGTTGACTTAATTGCGATA+TGG | 0.314443 | 3.2:-78686582 | MS.gene06541:CDS |
| GCCAAGGTGGAGAAAGTTAA+TGG | 0.315639 | 3.2:-78686421 | MS.gene06541:CDS |
| AATTGATCAGTAGTAGCTTT+TGG | 0.339749 | 3.2:+78685848 | None:intergenic |
| GAGGCAACGGGTTTCTTCGC+TGG | 0.347716 | 3.2:+78688292 | None:intergenic |
| ACTGTCACTGCCACACGAAT+AGG | 0.349730 | 3.2:+78686115 | None:intergenic |
| CAGCACTGCGAGTTTGCATT+TGG | 0.373188 | 3.2:+78685786 | None:intergenic |
| AGCATCCCAGGGAGAACATT+CGG | 0.381324 | 3.2:-78686612 | MS.gene06541:CDS |
| CTCCTTCGCTTTGATGTTCG+AGG | 0.381420 | 3.2:+78686321 | None:intergenic |
| CGTCATGAGCTCAGCAGAAA+TGG | 0.387279 | 3.2:-78685945 | MS.gene06541:CDS |
| GAACGGGGCCTCTGATTCTA+AGG | 0.389336 | 3.2:-78686524 | MS.gene06541:CDS |
| ATCATAGTCTTCAGCTTTGG+TGG | 0.390447 | 3.2:+78686250 | None:intergenic |
| CTTTGGTGGAGCAGCAGCGC+TGG | 0.398518 | 3.2:+78686264 | None:intergenic |
| GAAAACTGGGGTCCTTCAAA+TGG | 0.424609 | 3.2:-78686076 | MS.gene06541:CDS |
| TTGATCATAGTCTTCAGCTT+TGG | 0.429713 | 3.2:+78686247 | None:intergenic |
| TACTGTTGAGCCACAGCGGC+TGG | 0.438165 | 3.2:-78685969 | MS.gene06541:CDS |
| TTCAAGCGCATCGAGGCAAC+GGG | 0.440343 | 3.2:+78688280 | None:intergenic |
| GCATCCCAGGGAGAACATTC+GGG | 0.444394 | 3.2:-78686611 | MS.gene06541:CDS |
| CTCATGACGGCCAGCCGCTG+TGG | 0.450612 | 3.2:+78685959 | None:intergenic |
| CTGTCACTGCCACACGAATA+GGG | 0.453244 | 3.2:+78686116 | None:intergenic |
| AGGCAACGGGTTTCTTCGCT+GGG | 0.460026 | 3.2:+78688293 | None:intergenic |
| TCCTTCAAATGGAGCCCAAA+AGG | 0.467781 | 3.2:-78686065 | MS.gene06541:CDS |
| AAACTCTCACCAAGCATCCC+AGG | 0.468100 | 3.2:-78686624 | MS.gene06541:CDS |
| GTGGTTGGGTTCGATGGAGA+AGG | 0.470982 | 3.2:-78688393 | None:intergenic |
| GGTTCATCAAAGCTGAGCTC+TGG | 0.479292 | 3.2:-78686394 | MS.gene06541:CDS |
| TTCTTCGCTGGGACTATCAT+CGG | 0.481323 | 3.2:+78688304 | None:intergenic |
| AATGTTCTCCCTGGGATGCT+TGG | 0.486291 | 3.2:+78686615 | None:intergenic |
| CAAGTGACATAGGTTGTCAT+AGG | 0.486857 | 3.2:+78685758 | None:intergenic |
| CCCATTAACTTTCTCCACCT+TGG | 0.490756 | 3.2:+78686420 | None:intergenic |
| CCTTTCTCAACCTTCACTGA+AGG | 0.497037 | 3.2:+78686451 | None:intergenic |
| ATGGAAAGACGTAATTATCA+AGG | 0.497212 | 3.2:-78686563 | MS.gene06541:CDS |
| GTCCGTATTATTTGAAAACT+GGG | 0.498242 | 3.2:-78686089 | MS.gene06541:CDS |
| GTTCAAGCGCATCGAGGCAA+CGG | 0.502578 | 3.2:+78688279 | None:intergenic |
| CCAAGGTGGAGAAAGTTAAT+GGG | 0.509185 | 3.2:-78686420 | MS.gene06541:CDS |
| GGGACTATCATCGGTGGAGG+TGG | 0.510748 | 3.2:+78688313 | None:intergenic |
| AAAAGCCCGAATGTTCTCCC+TGG | 0.523075 | 3.2:+78686606 | None:intergenic |
| GCAGTTAACACAAGTGACAT+AGG | 0.530050 | 3.2:+78685748 | None:intergenic |
| CTAAGGTTGAGTCAACGAAT+GGG | 0.530166 | 3.2:-78686507 | MS.gene06541:CDS |
| CCTTCAGTGAAGGTTGAGAA+AGG | 0.536034 | 3.2:-78686451 | MS.gene06541:CDS |
| GAAGGAGAAAGAGAAAGAGT+TGG | 0.537798 | 3.2:-78688375 | MS.gene06541:CDS |
| AGCATCCGCCGCTTTCTTCG+CGG | 0.541475 | 3.2:+78688337 | None:intergenic |
| AGAGGCAGATGAAGATATGA+TGG | 0.547455 | 3.2:-78686158 | MS.gene06541:CDS |
| GTGGAGAAAGTTAATGGGAA+TGG | 0.557971 | 3.2:-78686415 | MS.gene06541:CDS |
| TCTCCGAGATGCTTTAGCTA+AGG | 0.559780 | 3.2:-78686188 | MS.gene06541:CDS |
| TTCAGCGCGAGACAAAATAA+GGG | 0.562584 | 3.2:-78686215 | MS.gene06541:CDS |
| GCTGAGCTCTGGAAATGTAA+AGG | 0.564072 | 3.2:-78686383 | MS.gene06541:CDS |
| TCTAAGGTTGAGTCAACGAA+TGG | 0.570762 | 3.2:-78686508 | MS.gene06541:CDS |
| AGTTTGCATTTGGTAATAGG+TGG | 0.578245 | 3.2:+78685796 | None:intergenic |
| AAAGCCCGAATGTTCTCCCT+GGG | 0.578463 | 3.2:+78686607 | None:intergenic |
| CTGATCAATTTAAGTGTGGT+CGG | 0.587454 | 3.2:-78685835 | MS.gene06541:CDS |
| TATTCGTGTGGCAGTGACAG+TGG | 0.587816 | 3.2:-78686113 | MS.gene06541:CDS |
| GCTTTGTTCGACTGTGAGCG+TGG | 0.588912 | 3.2:-78685878 | MS.gene06541:CDS |
| CAGAAATGGCTAGTGAGCAA+AGG | 0.590372 | 3.2:-78685931 | MS.gene06541:CDS |
| AGACCTTAGCTAAAGCATCT+CGG | 0.591289 | 3.2:+78686185 | None:intergenic |
| AATGGGGAGAGAGCTAAAGC+TGG | 0.591506 | 3.2:-78686490 | MS.gene06541:CDS |
| GTGTTAACTGCAACAACCGT+TGG | 0.591905 | 3.2:-78685736 | MS.gene06541:CDS |
| GCAGAAGAGTCCTTCAGTGA+AGG | 0.594554 | 3.2:-78686461 | MS.gene06541:CDS |
| AAATGTAAAGGCACAAAATG+TGG | 0.596450 | 3.2:-78686371 | MS.gene06541:CDS |
| TTCGCTGGGACTATCATCGG+TGG | 0.598548 | 3.2:+78688307 | None:intergenic |
| GAGCCCAAAAGGTCAAGTAT+AGG | 0.599758 | 3.2:-78686054 | MS.gene06541:CDS |
| AACTCTCACCAAGCATCCCA+GGG | 0.605206 | 3.2:-78686623 | MS.gene06541:CDS |
| CAAAATTCTCGTCAATACCC+AGG | 0.608507 | 3.2:-78688231 | MS.gene06541:intron |
| GAAAGGAGAAAGTGCCAAGG+TGG | 0.613295 | 3.2:-78686434 | MS.gene06541:CDS |
| GCTGGGACTATCATCGGTGG+AGG | 0.613512 | 3.2:+78688310 | None:intergenic |
| ATGGGGAGAGAGCTAAAGCT+GGG | 0.620446 | 3.2:-78686489 | MS.gene06541:CDS |
| AGTGTGGTCGGTGTGGACAA+AGG | 0.621667 | 3.2:-78685823 | MS.gene06541:CDS |
| TTTAGCTAAGGTCTTTGAAG+AGG | 0.626494 | 3.2:-78686176 | MS.gene06541:CDS |
| TGACTCAACCTTAGAATCAG+AGG | 0.626857 | 3.2:+78686516 | None:intergenic |
| CAATTTAAGTGTGGTCGGTG+TGG | 0.627337 | 3.2:-78685830 | MS.gene06541:CDS |
| TACCTCGAACATCAAAGCGA+AGG | 0.634021 | 3.2:-78686323 | MS.gene06541:CDS |
| CTCGAACATCAAAGCGAAGG+AGG | 0.641252 | 3.2:-78686320 | MS.gene06541:CDS |
| ACTACTGATCAATTTAAGTG+TGG | 0.648979 | 3.2:-78685839 | MS.gene06541:CDS |
| GTACGAAGCCGCGAAGAAAG+CGG | 0.650598 | 3.2:-78688345 | MS.gene06541:CDS |
| TGAGAAAGGAGAAAGTGCCA+AGG | 0.657225 | 3.2:-78686437 | MS.gene06541:CDS |
| AGTACTAACAAAACTTCCAA+CGG | 0.659265 | 3.2:+78685720 | None:intergenic |
| TAAGGTTGAGTCAACGAATG+GGG | 0.661593 | 3.2:-78686506 | MS.gene06541:CDS |
| CATTTCTGCTGAGCTCATGA+CGG | 0.685355 | 3.2:+78685946 | None:intergenic |
| CGAAGCCGCGAAGAAAGCGG+CGG | 0.685814 | 3.2:-78688342 | MS.gene06541:CDS |
| TCCGTATTATTTGAAAACTG+GGG | 0.694223 | 3.2:-78686088 | MS.gene06541:CDS |
| TGCATGTGACCCTATTCGTG+TGG | 0.704457 | 3.2:-78686125 | MS.gene06541:CDS |
| TGAGCTGTTCAAGCGCATCG+AGG | 0.741948 | 3.2:+78688273 | None:intergenic |
| TTGGTACTGTTGAGCCACAG+CGG | 0.773544 | 3.2:-78685973 | MS.gene06541:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTAAAAAAAATACAAGATTT+CGG | + | chr3.2:78686503-78686522 | None:intergenic | 10.0% |
| !! | AAAAATATTGCTATGAAATA+TGG | + | chr3.2:78686889-78686908 | None:intergenic | 15.0% |
| !! | AAAAGAAATAGAGATAGTTA+AGG | - | chr3.2:78687340-78687359 | MS.gene06541:intron | 20.0% |
| !! | AAACAAGTAAAAATAAGAAC+GGG | - | chr3.2:78687564-78687583 | MS.gene06541:intron | 20.0% |
| !! | AAAGAAATAGAGATAGTTAA+GGG | - | chr3.2:78687341-78687360 | MS.gene06541:intron | 20.0% |
| !! | AAATCAGAAAAAACTATAAC+GGG | + | chr3.2:78686735-78686754 | None:intergenic | 20.0% |
| !! | AATACTAGTTCATAGTTTAT+TGG | - | chr3.2:78686939-78686958 | MS.gene06541:intron | 20.0% |
| !! | ATAGAAAAAACTGTAGTATT+TGG | - | chr3.2:78687308-78687327 | MS.gene06541:intron | 20.0% |
| !! | ATCCTTAAGATTAAACATTA+AGG | + | chr3.2:78688077-78688096 | None:intergenic | 20.0% |
| !! | ATTTGTTTAGAAATATCTGT+AGG | + | chr3.2:78686851-78686870 | None:intergenic | 20.0% |
| !! | CAAATCAGAAAAAACTATAA+CGG | + | chr3.2:78686736-78686755 | None:intergenic | 20.0% |
| !! | GAAACAAGTAAAAATAAGAA+CGG | - | chr3.2:78687563-78687582 | MS.gene06541:intron | 20.0% |
| !! | GAATAGAAAAATAATAACCT+GGG | + | chr3.2:78685893-78685912 | None:intergenic | 20.0% |
| !! | GAGTTATAGATTTGTAAATT+TGG | - | chr3.2:78686124-78686143 | MS.gene06541:CDS | 20.0% |
| !! | TGAATAGAAAAATAATAACC+TGG | + | chr3.2:78685894-78685913 | None:intergenic | 20.0% |
| !! | TTTGTTTAGAAATATCTGTA+GGG | + | chr3.2:78686850-78686869 | None:intergenic | 20.0% |
| !!! | ACAGTTTTTTCTATATAGTT+TGG | + | chr3.2:78687302-78687321 | None:intergenic | 20.0% |
| !!! | GTTTTGTTTTTGGTTAAATT+GGG | - | chr3.2:78686171-78686190 | MS.gene06541:CDS | 20.0% |
| !!! | TCAAATCTTTACTTTTTTCA+TGG | - | chr3.2:78687379-78687398 | MS.gene06541:intron | 20.0% |
| !!! | TCAATTTTAGGTTTTGTTTT+TGG | - | chr3.2:78686161-78686180 | MS.gene06541:CDS | 20.0% |
| !!! | TTTCTGATTTGAATAGATTT+TGG | - | chr3.2:78686745-78686764 | MS.gene06541:intron | 20.0% |
| ! | AACAACCTATTTATTAAGCA+AGG | + | chr3.2:78687110-78687129 | None:intergenic | 25.0% |
| ! | AACAAGTAAAAATAAGAACG+GGG | - | chr3.2:78687565-78687584 | MS.gene06541:intron | 25.0% |
| ! | AACTATGAACTAGTATTTCA+CGG | + | chr3.2:78686936-78686955 | None:intergenic | 25.0% |
| ! | CAACTGGCTAATTTAAATTA+CGG | + | chr3.2:78686320-78686339 | None:intergenic | 25.0% |
| ! | GTCCTTAATGTTTAATCTTA+AGG | - | chr3.2:78688072-78688091 | MS.gene06541:intron | 25.0% |
| ! | TGTATCCTTGCTTAATAAAT+AGG | - | chr3.2:78687102-78687121 | MS.gene06541:intron | 25.0% |
| ! | TTTGCATGTTATAGTTGTTA+GGG | - | chr3.2:78686003-78686022 | MS.gene06541:CDS | 25.0% |
| !! | ATTTTCTGATGTAATCTTTC+AGG | - | chr3.2:78687442-78687461 | MS.gene06541:intron | 25.0% |
| !! | GTAAAGATTTGAGATCAATT+TGG | + | chr3.2:78687371-78687390 | None:intergenic | 25.0% |
| !! | TCTATTCACATTGCAAATTT+TGG | - | chr3.2:78685906-78685925 | MS.gene06541:CDS | 25.0% |
| !! | TTTTGCATGTTATAGTTGTT+AGG | - | chr3.2:78686002-78686021 | MS.gene06541:CDS | 25.0% |
| !!! | GGTTTTGTTTTTGGTTAAAT+TGG | - | chr3.2:78686170-78686189 | MS.gene06541:CDS | 25.0% |
| !!! | TTTTTAATTCTTTGATGACG+TGG | - | chr3.2:78686516-78686535 | MS.gene06541:CDS | 25.0% |
| AATGAAACCAATCCTAACTT+TGG | + | chr3.2:78686670-78686689 | None:intergenic | 30.0% | |
| AATTAAATTAGCACATTGCG+TGG | - | chr3.2:78686217-78686236 | MS.gene06541:CDS | 30.0% | |
| ACCACAAATAACAATATCCT+TGG | + | chr3.2:78686619-78686638 | None:intergenic | 30.0% | |
| ACTACTGATCAATTTAAGTG+TGG | - | chr3.2:78688265-78688284 | MS.gene06541:CDS | 30.0% | |
| ACTATGAACTAGTATTTCAC+GGG | + | chr3.2:78686935-78686954 | None:intergenic | 30.0% | |
| AGTCCGTATTATTTGAAAAC+TGG | - | chr3.2:78688014-78688033 | MS.gene06541:intron | 30.0% | |
| ATGAAAATCGTAACAAGTAC+AGG | + | chr3.2:78687410-78687429 | None:intergenic | 30.0% | |
| ATGGAAAGACGTAATTATCA+AGG | - | chr3.2:78687541-78687560 | MS.gene06541:intron | 30.0% | |
| ATTTAAATTAGCCAGTTGCA+TGG | - | chr3.2:78686322-78686341 | MS.gene06541:CDS | 30.0% | |
| GAAAATCCAAAACATATACC+CGG | + | chr3.2:78686380-78686399 | None:intergenic | 30.0% | |
| GAACTTATTGAAACTGGAAT+GGG | - | chr3.2:78686788-78686807 | MS.gene06541:intron | 30.0% | |
| GGAAATCAACTCTTAATGTT+TGG | - | chr3.2:78686766-78686785 | MS.gene06541:intron | 30.0% | |
| GTCCGTATTATTTGAAAACT+GGG | - | chr3.2:78688015-78688034 | MS.gene06541:intron | 30.0% | |
| TATCATTGTTGTCGTTATCT+TGG | - | chr3.2:78686584-78686603 | MS.gene06541:CDS | 30.0% | |
| TATCTTGGAATTTATGACCA+AGG | - | chr3.2:78686599-78686618 | MS.gene06541:CDS | 30.0% | |
| TATTGCTATGAAATATGGAG+AGG | + | chr3.2:78686884-78686903 | None:intergenic | 30.0% | |
| TATTGTATCGTAATTGAGTC+CGG | - | chr3.2:78686358-78686377 | MS.gene06541:CDS | 30.0% | |
| TCCGTATTATTTGAAAACTG+GGG | - | chr3.2:78688016-78688035 | MS.gene06541:intron | 30.0% | |
| TTAACATCAACAGAAACTCA+GGG | + | chr3.2:78686198-78686217 | None:intergenic | 30.0% | |
| TTTAACATCAACAGAAACTC+AGG | + | chr3.2:78686199-78686218 | None:intergenic | 30.0% | |
| ! | AAATGTAAAGGCACAAAATG+TGG | - | chr3.2:78687733-78687752 | MS.gene06541:intron | 30.0% |
| ! | AACTGTAGTATTTGGAATTC+AGG | - | chr3.2:78687316-78687335 | MS.gene06541:intron | 30.0% |
| ! | AATTGATCAGTAGTAGCTTT+TGG | + | chr3.2:78688259-78688278 | None:intergenic | 30.0% |
| ! | ACCCCAGTTTTCAAATAATA+CGG | + | chr3.2:78688020-78688039 | None:intergenic | 30.0% |
| ! | ACGAGAATTTTGTAATTGAC+CGG | + | chr3.2:78685865-78685884 | None:intergenic | 30.0% |
| ! | ACTGTAGTATTTGGAATTCA+GGG | - | chr3.2:78687317-78687336 | MS.gene06541:intron | 30.0% |
| ! | ATAGTTTATTGGTCTGATTG+TGG | - | chr3.2:78686950-78686969 | MS.gene06541:intron | 30.0% |
| ! | ATTTTCCAAAAGATGGATAC+GGG | - | chr3.2:78686394-78686413 | MS.gene06541:CDS | 30.0% |
| ! | GATTTTCCAAAAGATGGATA+CGG | - | chr3.2:78686393-78686412 | MS.gene06541:CDS | 30.0% |
| ! | TGTTTGGAACTTATTGAAAC+TGG | - | chr3.2:78686782-78686801 | MS.gene06541:intron | 30.0% |
| !! | ACCAAGGATATTGTTATTTG+TGG | - | chr3.2:78686615-78686634 | MS.gene06541:CDS | 30.0% |
| !! | GTTTTGGATTTTCCAAAAGA+TGG | - | chr3.2:78686387-78686406 | MS.gene06541:CDS | 30.0% |
| !! | TACCAATTTATCTCTGAAAC+TGG | + | chr3.2:78687242-78687261 | None:intergenic | 30.0% |
| !!! | ATAGGTTTTGGATTTTGCAA+AGG | - | chr3.2:78686276-78686295 | MS.gene06541:CDS | 30.0% |
| AAATATGGAGAGGATACGTT+AGG | + | chr3.2:78686874-78686893 | None:intergenic | 35.0% | |
| AAATGACAGCTAGTTGTGTT+TGG | - | chr3.2:78686639-78686658 | MS.gene06541:CDS | 35.0% | |
| AGCCACAAAAACCAAAAAAG+CGG | + | chr3.2:78686998-78687017 | None:intergenic | 35.0% | |
| ATTGTATCGTAATTGAGTCC+GGG | - | chr3.2:78686359-78686378 | MS.gene06541:CDS | 35.0% | |
| CACATTGCGTGGATATATAT+GGG | - | chr3.2:78686228-78686247 | MS.gene06541:CDS | 35.0% | |
| CCATAAGCAAGGTTCATAAA+TGG | + | chr3.2:78687027-78687046 | None:intergenic | 35.0% | |
| CCATTTATGAACCTTGCTTA+TGG | - | chr3.2:78687024-78687043 | MS.gene06541:intron | 35.0% | |
| CTGATCAATTTAAGTGTGGT+CGG | - | chr3.2:78688269-78688288 | MS.gene06541:CDS | 35.0% | |
| GATTCAGCAACAAGAAATTG+TGG | + | chr3.2:78687080-78687099 | None:intergenic | 35.0% | |
| GGAACTTATTGAAACTGGAA+TGG | - | chr3.2:78686787-78686806 | MS.gene06541:intron | 35.0% | |
| GTGAGTATGCTTGTAAGAAA+AGG | + | chr3.2:78687053-78687072 | None:intergenic | 35.0% | |
| GTTGTTAGGGTTCAATTCAA+AGG | - | chr3.2:78686016-78686035 | MS.gene06541:CDS | 35.0% | |
| TAGGGTTCAATTCAAAGGAA+GGG | - | chr3.2:78686021-78686040 | MS.gene06541:CDS | 35.0% | |
| TGCCAGTTTCAGAGATAAAT+TGG | - | chr3.2:78687237-78687256 | MS.gene06541:intron | 35.0% | |
| TGTTTGGATTCACCAAAGTT+AGG | - | chr3.2:78686655-78686674 | MS.gene06541:intron | 35.0% | |
| TTAGGGTTCAATTCAAAGGA+AGG | - | chr3.2:78686020-78686039 | MS.gene06541:CDS | 35.0% | |
| TTCTGATGTAATCTTTCAGG+TGG | - | chr3.2:78687445-78687464 | MS.gene06541:intron | 35.0% | |
| TTGATCATAGTCTTCAGCTT+TGG | + | chr3.2:78687860-78687879 | None:intergenic | 35.0% | |
| ! | AAAACTTTTCTCCGGAAATC+AGG | + | chr3.2:78688109-78688128 | None:intergenic | 35.0% |
| ! | AAACTTTTCTCCGGAAATCA+GGG | + | chr3.2:78688108-78688127 | None:intergenic | 35.0% |
| ! | AGTTTGCATTTGGTAATAGG+TGG | + | chr3.2:78688311-78688330 | None:intergenic | 35.0% |
| ! | ATTGAACCGTAATTGACTCT+GGG | - | chr3.2:78686252-78686271 | MS.gene06541:CDS | 35.0% |
| ! | ATTTTGCAAAGGATGGATAC+GGG | - | chr3.2:78686287-78686306 | MS.gene06541:CDS | 35.0% |
| ! | GAAAAAACTATAACGGGATC+TGG | + | chr3.2:78686729-78686748 | None:intergenic | 35.0% |
| ! | GATTTTGCAAAGGATGGATA+CGG | - | chr3.2:78686286-78686305 | MS.gene06541:CDS | 35.0% |
| ! | TACCAAGCAAAACTTTTCTC+CGG | + | chr3.2:78688117-78688136 | None:intergenic | 35.0% |
| ! | TATTGAACCGTAATTGACTC+TGG | - | chr3.2:78686251-78686270 | MS.gene06541:CDS | 35.0% |
| ! | TCTGATGTAATCTTTCAGGT+GGG | - | chr3.2:78687446-78687465 | MS.gene06541:intron | 35.0% |
| ! | TGAACAGCTCAAGAATTTTC+CGG | - | chr3.2:78685843-78685862 | MS.gene06541:CDS | 35.0% |
| ! | TTTAGCTAAGGTCTTTGAAG+AGG | - | chr3.2:78687928-78687947 | MS.gene06541:intron | 35.0% |
| !! | CTGTTGACTTAATTGCGATA+TGG | - | chr3.2:78687522-78687541 | MS.gene06541:intron | 35.0% |
| !! | GAGCTGTGTTGTTCAATTTT+AGG | - | chr3.2:78686149-78686168 | MS.gene06541:CDS | 35.0% |
| !! | GTTTTGGATTTTGCAAAGGA+TGG | - | chr3.2:78686280-78686299 | MS.gene06541:CDS | 35.0% |
| !!! | AGTTCACTTTTTCTTTGTCG+GGG | - | chr3.2:78686551-78686570 | MS.gene06541:CDS | 35.0% |
| !!! | CAGTTCACTTTTTCTTTGTC+GGG | - | chr3.2:78686550-78686569 | MS.gene06541:CDS | 35.0% |
| !!! | GCAGTTCACTTTTTCTTTGT+CGG | - | chr3.2:78686549-78686568 | MS.gene06541:CDS | 35.0% |
| !!! | TACCGCTTTTTTGGTTTTTG+TGG | - | chr3.2:78686993-78687012 | MS.gene06541:intron | 35.0% |
| ACCAAAAAAGCGGTATAGTG+TGG | + | chr3.2:78686988-78687007 | None:intergenic | 40.0% | |
| AGAAAAGGAAGCCATAAGCA+AGG | + | chr3.2:78687038-78687057 | None:intergenic | 40.0% | |
| AGAGGCAGATGAAGATATGA+TGG | - | chr3.2:78687946-78687965 | MS.gene06541:intron | 40.0% | |
| ATCAGAAGAACCCTGATTTC+CGG | - | chr3.2:78688095-78688114 | MS.gene06541:intron | 40.0% | |
| ATTCAGCGCGAGACAAAATA+AGG | - | chr3.2:78687888-78687907 | MS.gene06541:intron | 40.0% | |
| CAAAATTCTCGTCAATACCC+AGG | - | chr3.2:78685873-78685892 | MS.gene06541:CDS | 40.0% | |
| CAAGTGACATAGGTTGTCAT+AGG | + | chr3.2:78688349-78688368 | None:intergenic | 40.0% | |
| CCAAGGTGGAGAAAGTTAAT+GGG | - | chr3.2:78687684-78687703 | MS.gene06541:intron | 40.0% | |
| CCTATACCCAGAGTCAATTA+CGG | + | chr3.2:78686261-78686280 | None:intergenic | 40.0% | |
| CTAAGGTTGAGTCAACGAAT+GGG | - | chr3.2:78687597-78687616 | MS.gene06541:intron | 40.0% | |
| GAAGGAGAAAGAGAAAGAGT+TGG | - | chr3.2:78685729-78685748 | MS.gene06541:CDS | 40.0% | |
| GCACATTGCGTGGATATATA+TGG | - | chr3.2:78686227-78686246 | MS.gene06541:CDS | 40.0% | |
| GCAGTTAACACAAGTGACAT+AGG | + | chr3.2:78688359-78688378 | None:intergenic | 40.0% | |
| GGATTCACCAAAGTTAGGAT+TGG | - | chr3.2:78686660-78686679 | MS.gene06541:intron | 40.0% | |
| GTGGAGAAAGTTAATGGGAA+TGG | - | chr3.2:78687689-78687708 | MS.gene06541:intron | 40.0% | |
| TAAGGTTGAGTCAACGAATG+GGG | - | chr3.2:78687598-78687617 | MS.gene06541:intron | 40.0% | |
| TATCCTGATATCCATGCAAC+TGG | + | chr3.2:78686336-78686355 | None:intergenic | 40.0% | |
| TGACTCAACCTTAGAATCAG+AGG | + | chr3.2:78687591-78687610 | None:intergenic | 40.0% | |
| TTCAGCGCGAGACAAAATAA+GGG | - | chr3.2:78687889-78687908 | MS.gene06541:intron | 40.0% | |
| ! | AGACCTTAGCTAAAGCATCT+CGG | + | chr3.2:78687922-78687941 | None:intergenic | 40.0% |
| ! | AGGACCTATACTTGACCTTT+TGG | + | chr3.2:78688057-78688076 | None:intergenic | 40.0% |
| ! | ATCATAGTCTTCAGCTTTGG+TGG | + | chr3.2:78687857-78687876 | None:intergenic | 40.0% |
| ! | ATTTTCTTTGCCGCAGATAC+TGG | + | chr3.2:78687815-78687834 | None:intergenic | 40.0% |
| ! | GCGAGTTTGCATTTGGTAAT+AGG | + | chr3.2:78688314-78688333 | None:intergenic | 40.0% |
| ! | GGACCTATACTTGACCTTTT+GGG | + | chr3.2:78688056-78688075 | None:intergenic | 40.0% |
| ! | TCTAAGGTTGAGTCAACGAA+TGG | - | chr3.2:78687596-78687615 | MS.gene06541:intron | 40.0% |
| ! | TTCCGGAGAAAAGTTTTGCT+TGG | - | chr3.2:78688112-78688131 | MS.gene06541:intron | 40.0% |
| ! | TTGACTCTGGGTATAGGTTT+TGG | - | chr3.2:78686264-78686283 | MS.gene06541:CDS | 40.0% |
| ! | TTGAGTCCGGGTATATGTTT+TGG | - | chr3.2:78686371-78686390 | MS.gene06541:CDS | 40.0% |
| !!! | GTTCACTTTTTCTTTGTCGG+GGG | - | chr3.2:78686552-78686571 | MS.gene06541:CDS | 40.0% |
| !!! | TTCACTTTTTCTTTGTCGGG+GGG | - | chr3.2:78686553-78686572 | MS.gene06541:CDS | 40.0% |
| CAATTTAAGTGTGGTCGGTG+TGG | - | chr3.2:78688274-78688293 | MS.gene06541:CDS | 45.0% | |
| CAGAAATGGCTAGTGAGCAA+AGG | - | chr3.2:78688173-78688192 | MS.gene06541:intron | 45.0% | |
| CATTTCTGCTGAGCTCATGA+CGG | + | chr3.2:78688161-78688180 | None:intergenic | 45.0% | |
| CCAAAAGATGGATACGGGTA+TGG | - | chr3.2:78686399-78686418 | MS.gene06541:CDS | 45.0% | |
| CCCATTAACTTTCTCCACCT+TGG | + | chr3.2:78687687-78687706 | None:intergenic | 45.0% | |
| CCTACACTAACCCTCAGTAA+CGG | + | chr3.2:78686427-78686446 | None:intergenic | 45.0% | |
| CCTTCAGTGAAGGTTGAGAA+AGG | - | chr3.2:78687653-78687672 | MS.gene06541:intron | 45.0% | |
| CCTTTCTCAACCTTCACTGA+AGG | + | chr3.2:78687656-78687675 | None:intergenic | 45.0% | |
| GAAAACTGGGGTCCTTCAAA+TGG | - | chr3.2:78688028-78688047 | MS.gene06541:intron | 45.0% | |
| GAGCCCAAAAGGTCAAGTAT+AGG | - | chr3.2:78688050-78688069 | MS.gene06541:intron | 45.0% | |
| GCCAAGGTGGAGAAAGTTAA+TGG | - | chr3.2:78687683-78687702 | MS.gene06541:intron | 45.0% | |
| GGAGGAAAAACCAGTATCTG+CGG | - | chr3.2:78687802-78687821 | MS.gene06541:intron | 45.0% | |
| GTGTTAACTGCAACAACCGT+TGG | - | chr3.2:78688368-78688387 | MS.gene06541:CDS | 45.0% | |
| TACCTCGAACATCAAAGCGA+AGG | - | chr3.2:78687781-78687800 | MS.gene06541:intron | 45.0% | |
| TAGCCAGTTGCATGGATATC+AGG | - | chr3.2:78686330-78686349 | MS.gene06541:CDS | 45.0% | |
| TCCTTCAAATGGAGCCCAAA+AGG | - | chr3.2:78688039-78688058 | MS.gene06541:intron | 45.0% | |
| TCTCCGAGATGCTTTAGCTA+AGG | - | chr3.2:78687916-78687935 | MS.gene06541:intron | 45.0% | |
| TTCTTCGCTGGGACTATCAT+CGG | + | chr3.2:78685803-78685822 | None:intergenic | 45.0% | |
| ! | ACCTTTTGGGCTCCATTTGA+AGG | + | chr3.2:78688043-78688062 | None:intergenic | 45.0% |
| ! | CCATACCCGTATCCATCTTT+TGG | + | chr3.2:78686402-78686421 | None:intergenic | 45.0% |
| ! | CCGTAATTGACTCTGGGTAT+AGG | - | chr3.2:78686258-78686277 | MS.gene06541:CDS | 45.0% |
| !! | GCTGAGCTCTGGAAATGTAA+AGG | - | chr3.2:78687721-78687740 | MS.gene06541:intron | 45.0% |
| !! | TGAGAAAGGAGAAAGTGCCA+AGG | - | chr3.2:78687667-78687686 | MS.gene06541:intron | 45.0% |
| !!! | GCCACACTATACCGCTTTTT+TGG | - | chr3.2:78686984-78687003 | MS.gene06541:intron | 45.0% |
| !!! | TCACTTTTTCTTTGTCGGGG+GGG | - | chr3.2:78686554-78686573 | MS.gene06541:CDS | 45.0% |
| AAAAGCCCGAATGTTCTCCC+TGG | + | chr3.2:78687501-78687520 | None:intergenic | 50.0% | |
| AAACTCTCACCAAGCATCCC+AGG | - | chr3.2:78687480-78687499 | MS.gene06541:intron | 50.0% | |
| AAAGCCCGAATGTTCTCCCT+GGG | + | chr3.2:78687500-78687519 | None:intergenic | 50.0% | |
| AACTCTCACCAAGCATCCCA+GGG | - | chr3.2:78687481-78687500 | MS.gene06541:intron | 50.0% | |
| AATGGGGAGAGAGCTAAAGC+TGG | - | chr3.2:78687614-78687633 | MS.gene06541:intron | 50.0% | |
| AATGTTCTCCCTGGGATGCT+TGG | + | chr3.2:78687492-78687511 | None:intergenic | 50.0% | |
| ACTGTCACTGCCACACGAAT+AGG | + | chr3.2:78687992-78688011 | None:intergenic | 50.0% | |
| AGCATCCCAGGGAGAACATT+CGG | - | chr3.2:78687492-78687511 | MS.gene06541:intron | 50.0% | |
| ATGGGGAGAGAGCTAAAGCT+GGG | - | chr3.2:78687615-78687634 | MS.gene06541:intron | 50.0% | |
| CAGCACTGCGAGTTTGCATT+TGG | + | chr3.2:78688321-78688340 | None:intergenic | 50.0% | |
| CGTCATGAGCTCAGCAGAAA+TGG | - | chr3.2:78688159-78688178 | MS.gene06541:intron | 50.0% | |
| CTCCTTCGCTTTGATGTTCG+AGG | + | chr3.2:78687786-78687805 | None:intergenic | 50.0% | |
| CTCGAACATCAAAGCGAAGG+AGG | - | chr3.2:78687784-78687803 | MS.gene06541:intron | 50.0% | |
| CTGTCACTGCCACACGAATA+GGG | + | chr3.2:78687991-78688010 | None:intergenic | 50.0% | |
| GCAAAGGATGGATACGGGTA+AGG | - | chr3.2:78686292-78686311 | MS.gene06541:CDS | 50.0% | |
| GCAGAAGAGTCCTTCAGTGA+AGG | - | chr3.2:78687643-78687662 | MS.gene06541:intron | 50.0% | |
| GGTTCATCAAAGCTGAGCTC+TGG | - | chr3.2:78687710-78687729 | MS.gene06541:intron | 50.0% | |
| TATTCGTGTGGCAGTGACAG+TGG | - | chr3.2:78687991-78688010 | MS.gene06541:intron | 50.0% | |
| TGCATGTGACCCTATTCGTG+TGG | - | chr3.2:78687979-78687998 | MS.gene06541:intron | 50.0% | |
| TTGGTACTGTTGAGCCACAG+CGG | - | chr3.2:78688131-78688150 | MS.gene06541:intron | 50.0% | |
| ! | CCGTTACTGAGGGTTAGTGT+AGG | - | chr3.2:78686424-78686443 | MS.gene06541:CDS | 50.0% |
| !! | GAAAGGAGAAAGTGCCAAGG+TGG | - | chr3.2:78687670-78687689 | MS.gene06541:intron | 50.0% |
| AGTGTGGTCGGTGTGGACAA+AGG | - | chr3.2:78688281-78688300 | MS.gene06541:CDS | 55.0% | |
| GAACGGGGCCTCTGATTCTA+AGG | - | chr3.2:78687580-78687599 | MS.gene06541:intron | 55.0% | |
| GCATCCCAGGGAGAACATTC+GGG | - | chr3.2:78687493-78687512 | MS.gene06541:intron | 55.0% | |
| GGGTATGGCACCGTTACTGA+GGG | - | chr3.2:78686414-78686433 | MS.gene06541:CDS | 55.0% | |
| GTACGAAGCCGCGAAGAAAG+CGG | - | chr3.2:78685759-78685778 | MS.gene06541:CDS | 55.0% | |
| GTTCAAGCGCATCGAGGCAA+CGG | + | chr3.2:78685828-78685847 | None:intergenic | 55.0% | |
| TGAGCTGTTCAAGCGCATCG+AGG | + | chr3.2:78685834-78685853 | None:intergenic | 55.0% | |
| TTCAAGCGCATCGAGGCAAC+GGG | + | chr3.2:78685827-78685846 | None:intergenic | 55.0% | |
| TTCGCTGGGACTATCATCGG+TGG | + | chr3.2:78685800-78685819 | None:intergenic | 55.0% | |
| ! | AGGCAACGGGTTTCTTCGCT+GGG | + | chr3.2:78685814-78685833 | None:intergenic | 55.0% |
| ! | CTGAGGGTTAGTGTAGGCGT+TGG | - | chr3.2:78686430-78686449 | MS.gene06541:CDS | 55.0% |
| ! | GCTTTGTTCGACTGTGAGCG+TGG | - | chr3.2:78688226-78688245 | MS.gene06541:intron | 55.0% |
| CGGGTATGGCACCGTTACTG+AGG | - | chr3.2:78686413-78686432 | MS.gene06541:CDS | 60.0% | |
| GCTGGGACTATCATCGGTGG+AGG | + | chr3.2:78685797-78685816 | None:intergenic | 60.0% | |
| GGGACTATCATCGGTGGAGG+TGG | + | chr3.2:78685794-78685813 | None:intergenic | 60.0% | |
| TACTGTTGAGCCACAGCGGC+TGG | - | chr3.2:78688135-78688154 | MS.gene06541:intron | 60.0% | |
| TTCTTTGTCGGGGGGGCAGA+AGG | - | chr3.2:78686561-78686580 | MS.gene06541:CDS | 60.0% | |
| ! | AGCATCCGCCGCTTTCTTCG+CGG | + | chr3.2:78685770-78685789 | None:intergenic | 60.0% |
| ! | GAGGCAACGGGTTTCTTCGC+TGG | + | chr3.2:78685815-78685834 | None:intergenic | 60.0% |
| CGAAGCCGCGAAGAAAGCGG+CGG | - | chr3.2:78685762-78685781 | MS.gene06541:CDS | 65.0% | |
| CTTTGGTGGAGCAGCAGCGC+TGG | + | chr3.2:78687843-78687862 | None:intergenic | 65.0% | |
| CTCATGACGGCCAGCCGCTG+TGG | + | chr3.2:78688148-78688167 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 78685724 | 78688402 | 78685724 | ID=MS.gene06541 |
| chr3.2 | mRNA | 78685724 | 78688402 | 78685724 | ID=MS.gene06541.t1;Parent=MS.gene06541 |
| chr3.2 | exon | 78688232 | 78688402 | 78688232 | ID=MS.gene06541.t1.exon1;Parent=MS.gene06541.t1 |
| chr3.2 | CDS | 78688232 | 78688402 | 78688232 | ID=cds.MS.gene06541.t1;Parent=MS.gene06541.t1 |
| chr3.2 | exon | 78685724 | 78686662 | 78685724 | ID=MS.gene06541.t1.exon2;Parent=MS.gene06541.t1 |
| chr3.2 | CDS | 78685724 | 78686662 | 78685724 | ID=cds.MS.gene06541.t1;Parent=MS.gene06541.t1 |
| Gene Sequence |
| Protein sequence |
