AlfalfaGEDB | MS.gene52373

M. sativa cultivar XinJiangDaYe / MS.gene52373

KEGG: K24193
GO: GO:0003674 GO:0005215 GO:0005575 GO:0006810 GO:0008150 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0051179 GO:0051234 GO:0055085 GO:0110165
PFAM: PF00083.27

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52373.t1	XP_024635482.1	96.1	233	9	0	1	233	215	447	3.20E-115	424.5

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52373.t1	Q93Y91	55.7	235	101	2	1	232	213	447	5.3e-66	252.3

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52373.t1	A0A396IVA9	96.1	233	9	0	1	233	215	447	2.3e-115	424.5

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene049549	MS.gene52373	0.817868	2.64E-52	-1.69E-46
MS.gene050096	MS.gene52373	0.807309	5.38E-50	-1.69E-46
MS.gene050406	MS.gene52373	-0.801636	8.20E-49	-1.69E-46
MS.gene050529	MS.gene52373	-0.803996	2.67E-49	-1.69E-46
MS.gene052211	MS.gene52373	0.800833	1.20E-48	-1.69E-46
MS.gene05240	MS.gene52373	0.835865	1.31E-56	-1.69E-46
MS.gene053031	MS.gene52373	0.828534	8.52E-55	-1.69E-46
MS.gene053406	MS.gene52373	0.841117	5.77E-58	-1.69E-46
MS.gene054181	MS.gene52373	0.805192	1.50E-49	-1.69E-46
MS.gene054421	MS.gene52373	0.842843	2.02E-58	-1.69E-46
MS.gene054742	MS.gene52373	0.82973	4.37E-55	-1.69E-46
MS.gene055601	MS.gene52373	0.806616	7.54E-50	-1.69E-46
MS.gene056920	MS.gene52373	0.824601	7.39E-54	-1.69E-46
MS.gene058218	MS.gene52373	0.813004	3.19E-51	-1.69E-46
MS.gene059265	MS.gene52373	0.805061	1.60E-49	-1.69E-46
MS.gene059294	MS.gene52373	-0.800075	1.71E-48	-1.69E-46
MS.gene059402	MS.gene52373	0.820594	6.32E-53	-1.69E-46
MS.gene059955	MS.gene52373	0.813821	2.11E-51	-1.69E-46
MS.gene060087	MS.gene52373	0.814928	1.20E-51	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52373.t1	MTR_3g074390	90.129	233	23	0	1	233	217	449	3.14e-150	428
MS.gene52373.t1	MTR_3g074410	80.258	233	46	0	1	233	214	446	1.19e-135	391
MS.gene52373.t1	MTR_3g074370	76.395	233	55	0	1	233	45	277	5.42e-133	378
MS.gene52373.t1	MTR_3g074340	76.395	233	55	0	1	233	45	277	8.59e-133	377
MS.gene52373.t1	MTR_3g074320	75.966	233	56	0	1	233	45	277	3.48e-132	376
MS.gene52373.t1	MTR_3g074380	92.763	152	11	0	1	152	215	366	1.74e-97	289
MS.gene52373.t1	MTR_3g074270	62.232	233	67	2	1	233	212	423	2.60e-97	292
MS.gene52373.t1	MTR_3g093060	47.210	233	120	3	2	233	169	399	4.29e-80	247
MS.gene52373.t1	MTR_3g074400	60.092	218	64	2	17	233	168	363	1.28e-79	245
MS.gene52373.t1	MTR_3g008160	50.000	234	112	4	1	233	166	395	4.27e-77	239
MS.gene52373.t1	MTR_5g006070	45.494	233	124	3	1	233	167	396	8.91e-77	239
MS.gene52373.t1	MTR_3g008160	50.000	234	112	4	1	233	215	444	1.93e-76	239
MS.gene52373.t1	MTR_5g006070	45.494	233	124	3	1	233	215	444	2.26e-76	239
MS.gene52373.t1	MTR_0204s0020	48.069	233	117	3	1	233	208	436	3.17e-76	238
MS.gene52373.t1	MTR_0204s0020	48.069	233	117	3	1	233	211	439	3.56e-76	238
MS.gene52373.t1	MTR_5g082540	48.498	233	118	2	1	233	214	444	4.36e-76	238
MS.gene52373.t1	MTR_3g008170	50.000	234	113	3	1	233	215	445	1.88e-75	237
MS.gene52373.t1	MTR_5g041550	45.887	231	122	3	4	233	219	447	2.09e-74	234
MS.gene52373.t1	MTR_1g104780	45.064	233	125	3	1	233	215	444	2.50e-73	231
MS.gene52373.t1	MTR_3g093010	44.783	230	124	3	3	231	217	444	1.43e-71	227
MS.gene52373.t1	MTR_1g038600	44.635	233	127	2	1	233	196	426	2.07e-71	226
MS.gene52373.t1	MTR_1g038630	44.206	233	128	2	1	233	214	444	4.69e-71	225
MS.gene52373.t1	MTR_5g094760	50.431	232	111	3	1	232	217	444	6.16e-71	225
MS.gene52373.t1	MTR_0204s0040	47.210	233	119	3	1	233	219	447	7.17e-71	225
MS.gene52373.t1	MTR_4g091370	43.348	233	129	3	1	232	215	445	9.04e-70	222
MS.gene52373.t1	MTR_4g116770	47.210	233	119	3	1	233	415	643	3.61e-69	225
MS.gene52373.t1	MTR_7g091690	48.276	232	116	3	1	232	217	444	6.29e-68	217
MS.gene52373.t1	MTR_4g090600	44.872	234	126	3	1	233	215	446	6.93e-68	217
MS.gene52373.t1	MTR_0009s0370	44.348	230	125	3	3	231	216	443	1.44e-67	216
MS.gene52373.t1	MTR_1g104750	42.918	233	130	3	1	233	215	444	2.09e-67	216
MS.gene52373.t1	MTR_4g116790	47.639	233	118	3	1	233	217	445	2.12e-67	216
MS.gene52373.t1	MTR_1g104770	43.348	233	129	3	1	233	216	445	8.03e-67	214
MS.gene52373.t1	MTR_3g023480	42.609	230	129	3	3	231	216	443	1.14e-65	211
MS.gene52373.t1	MTR_3g007910	43.103	232	111	4	3	233	203	414	8.29e-65	208
MS.gene52373.t1	MTR_8g102860	42.489	233	129	4	1	232	165	393	6.65e-62	201
MS.gene52373.t1	MTR_8g102860	42.489	233	129	4	1	232	217	445	1.60e-61	201
MS.gene52373.t1	MTR_6g087040	40.343	233	134	5	1	232	217	445	8.93e-57	188
MS.gene52373.t1	MTR_6g088375	40.343	233	134	5	1	232	217	445	8.93e-57	188
MS.gene52373.t1	MTR_4g116790	48.344	151	76	2	1	151	217	365	1.77e-42	148
MS.gene52373.t1	MTR_1g038620	36.913	149	75	3	1	149	61	190	1.52e-27	104
MS.gene52373.t1	MTR_8g077310	29.075	227	159	1	4	230	118	342	2.07e-26	105
MS.gene52373.t1	MTR_8g077310	29.075	227	159	1	4	230	215	439	5.35e-26	105
MS.gene52373.t1	MTR_8g077300	29.956	227	157	1	4	230	207	431	1.10e-25	104
MS.gene52373.t1	MTR_2g013310	30.769	234	149	4	6	233	157	383	5.79e-24	99.4
MS.gene52373.t1	MTR_4g069500	27.490	251	159	4	1	233	13	258	6.18e-24	97.8
MS.gene52373.t1	MTR_2g013310	30.769	234	149	4	6	233	230	456	7.04e-24	99.8
MS.gene52373.t1	MTR_4g069500	27.490	251	159	4	1	233	152	397	3.02e-23	97.4
MS.gene52373.t1	MTR_4g069500	27.490	251	159	4	1	233	202	447	3.58e-23	97.4
MS.gene52373.t1	MTR_6g088450	29.289	239	159	4	2	233	231	466	1.82e-22	95.5
MS.gene52373.t1	MTR_5g020270	30.263	228	155	3	4	230	118	342	2.52e-22	94.4
MS.gene52373.t1	MTR_4g072030	30.165	242	145	6	10	233	208	443	3.60e-22	94.7
MS.gene52373.t1	MTR_8g103500	28.033	239	159	5	4	233	193	427	4.35e-22	94.4
MS.gene52373.t1	MTR_5g020270	30.263	228	155	3	4	230	218	442	4.56e-22	94.4
MS.gene52373.t1	MTR_7g446340	27.426	237	153	5	6	233	232	458	4.83e-22	94.4
MS.gene52373.t1	MTR_6g007340	27.426	237	153	5	6	233	232	458	4.83e-22	94.4
MS.gene52373.t1	MTR_4g118610	26.407	231	164	2	1	231	217	441	6.02e-21	91.3
MS.gene52373.t1	MTR_7g094110	28.936	235	152	6	1	231	207	430	7.37e-21	90.9
MS.gene52373.t1	MTR_7g094450	27.660	235	155	6	1	231	205	428	2.73e-20	89.4
MS.gene52373.t1	MTR_2g020710	25.105	239	157	4	1	231	125	349	3.32e-20	88.6
MS.gene52373.t1	MTR_7g113960	25.439	228	155	4	7	231	198	413	5.57e-20	88.2
MS.gene52373.t1	MTR_2g020710	25.316	237	155	4	3	231	216	438	6.20e-20	88.2
MS.gene52373.t1	MTR_1g022315	26.724	232	159	3	4	230	118	343	6.24e-20	87.8
MS.gene52373.t1	MTR_1g022315	26.724	232	159	3	4	230	217	442	1.29e-19	87.4
MS.gene52373.t1	MTR_3g116240	26.877	253	160	5	1	233	200	447	1.36e-19	87.4
MS.gene52373.t1	MTR_8g077890	29.482	251	137	7	10	233	201	438	1.98e-19	86.7
MS.gene52373.t1	MTR_7g113970	25.217	230	155	4	7	231	233	450	2.89e-19	86.3
MS.gene52373.t1	MTR_6g018790	26.050	238	155	5	1	233	277	498	7.08e-18	82.4
MS.gene52373.t1	MTR_7g082270	25.630	238	156	5	1	233	237	458	8.09e-18	82.0
MS.gene52373.t1	MTR_5g096000	40.426	94	51	2	145	233	152	245	5.47e-17	78.6
MS.gene52373.t1	MTR_8g077310	29.605	152	105	1	4	155	215	364	2.21e-16	77.8
MS.gene52373.t1	MTR_7g082270	24.336	226	150	5	1	221	237	446	1.27e-15	75.5
MS.gene52373.t1	MTR_4g077740	30.244	205	126	7	22	221	252	444	2.94e-15	74.7
MS.gene52373.t1	MTR_5g075300	23.622	254	166	4	1	233	192	438	1.04e-14	73.2
MS.gene52373.t1	MTR_4g013205	26.754	228	151	5	7	232	214	427	1.25e-14	72.8
MS.gene52373.t1	MTR_5g020270	26.754	228	142	4	4	230	218	421	1.28e-14	72.8
MS.gene52373.t1	MTR_7g094110	26.923	234	138	6	1	231	207	410	2.80e-14	71.6
MS.gene52373.t1	MTR_1g116660	25.000	232	162	7	7	233	214	438	3.87e-14	71.2
MS.gene52373.t1	MTR_2g020710	28.676	136	95	1	3	138	216	349	4.25e-14	71.2
MS.gene52373.t1	MTR_4g118610	25.373	201	144	2	3	203	219	413	4.46e-14	71.2
MS.gene52373.t1	MTR_2g020710	28.676	136	95	1	3	138	216	349	4.67e-14	70.9
MS.gene52373.t1	MTR_2g020710	28.676	136	95	1	3	138	216	349	7.41e-14	70.1
MS.gene52373.t1	MTR_5g019870	24.597	248	159	7	8	233	194	435	1.00e-13	70.1
MS.gene52373.t1	MTR_6g087910	22.685	216	155	4	10	225	231	434	2.18e-13	69.3
MS.gene52373.t1	MTR_2g049020	29.560	159	101	5	7	157	205	360	4.77e-13	68.2
MS.gene52373.t1	MTR_3g084110	22.318	233	167	5	7	233	207	431	5.26e-13	68.2
MS.gene52373.t1	MTR_7g005910	24.348	230	165	5	7	233	212	435	2.59e-12	65.9
MS.gene52373.t1	MTR_1g116650	27.564	156	107	3	81	233	316	468	5.79e-12	65.1
MS.gene52373.t1	MTR_2g026140	27.673	159	105	3	8	157	192	349	1.81e-11	63.5
MS.gene52373.t1	MTR_7g113970	24.812	133	97	1	8	140	234	363	4.90e-11	62.0
MS.gene52373.t1	MTR_7g113960	25.564	133	96	1	8	140	199	328	5.32e-11	62.0

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene52373.t1	AT1G34580	55.745	235	101	2	1	232	163	397	2.51e-88	268
MS.gene52373.t1	AT1G34580	55.745	235	101	2	1	232	213	447	7.15e-88	269
MS.gene52373.t1	AT1G11260	47.863	234	119	3	1	233	215	446	3.70e-78	244
MS.gene52373.t1	AT3G19940	47.210	233	121	2	1	233	216	446	6.32e-78	243
MS.gene52373.t1	AT1G50310	47.863	234	119	3	1	233	73	304	4.86e-76	234
MS.gene52373.t1	AT5G26340	46.352	233	122	3	1	233	216	445	1.67e-75	237
MS.gene52373.t1	AT1G50310	47.863	234	119	3	1	233	216	447	1.36e-74	235
MS.gene52373.t1	AT4G21480	48.069	233	118	3	1	232	213	443	1.46e-74	234
MS.gene52373.t1	AT3G19930	48.052	231	118	2	3	233	216	444	1.99e-74	234
MS.gene52373.t1	AT3G19930	48.052	231	118	2	3	233	216	444	1.99e-74	234
MS.gene52373.t1	AT4G02050	45.690	232	122	3	1	232	217	444	5.55e-74	233
MS.gene52373.t1	AT4G02050	45.690	232	122	3	1	232	217	444	5.55e-74	233
MS.gene52373.t1	AT5G23270	47.727	220	113	2	1	220	217	434	5.12e-70	223
MS.gene52373.t1	AT3G05960	42.918	233	129	3	1	233	211	439	5.43e-60	197
MS.gene52373.t1	AT5G61520	43.290	231	126	4	1	230	171	397	1.13e-59	195
MS.gene52373.t1	AT5G61520	43.290	231	126	4	1	230	219	445	2.67e-59	195
MS.gene52373.t1	AT5G26250	40.870	230	132	3	4	233	215	440	2.24e-58	192
MS.gene52373.t1	AT1G77210	39.056	233	137	5	1	232	68	296	3.97e-58	188
MS.gene52373.t1	AT1G77210	39.056	233	137	5	1	232	217	445	1.82e-56	187
MS.gene52373.t1	AT1G77210	39.056	233	137	5	1	232	217	445	1.82e-56	187
MS.gene52373.t1	AT1G07340	43.460	237	124	6	1	233	212	442	2.02e-55	184
MS.gene52373.t1	AT2G48020	28.879	232	152	5	3	231	195	416	1.30e-24	101
MS.gene52373.t1	AT2G48020	28.879	232	152	5	3	231	195	416	1.30e-24	101
MS.gene52373.t1	AT1G75220	29.515	227	158	1	4	230	216	440	2.12e-24	100
MS.gene52373.t1	AT3G05400	30.165	242	150	4	3	232	173	407	4.81e-24	99.8
MS.gene52373.t1	AT3G05400	30.165	242	150	4	3	232	193	427	6.59e-24	99.4
MS.gene52373.t1	AT5G27350	28.182	220	149	3	3	221	198	409	1.57e-21	92.8
MS.gene52373.t1	AT2G16120	28.000	250	161	4	1	233	198	445	2.57e-21	92.4
MS.gene52373.t1	AT2G16130	27.451	255	156	5	1	233	198	445	2.99e-21	92.0
MS.gene52373.t1	AT3G18830	25.498	251	163	5	1	232	208	453	4.23e-21	91.7
MS.gene52373.t1	AT1G54730	26.407	231	159	3	3	231	199	420	5.29e-21	90.9
MS.gene52373.t1	AT1G19450	27.753	227	162	1	4	230	217	441	5.86e-21	91.3
MS.gene52373.t1	AT1G54730	26.407	231	159	3	3	231	199	420	7.11e-21	90.9
MS.gene52373.t1	AT3G05160	26.977	215	146	3	3	215	139	344	9.73e-21	90.1
MS.gene52373.t1	AT3G05160	26.977	215	146	3	3	215	139	344	9.73e-21	90.1
MS.gene52373.t1	AT2G20780	27.234	235	152	5	7	233	233	456	1.04e-20	90.5
MS.gene52373.t1	AT3G05155	26.293	232	156	7	3	231	194	413	1.08e-20	90.5
MS.gene52373.t1	AT3G05160	26.977	215	146	3	3	215	188	393	1.37e-20	90.1
MS.gene52373.t1	AT2G20780	27.234	235	152	5	7	233	175	398	1.39e-20	90.1
MS.gene52373.t1	AT3G05165	27.778	216	145	3	2	215	196	402	1.84e-20	89.7
MS.gene52373.t1	AT3G05165	27.778	216	145	3	2	215	196	402	1.84e-20	89.7
MS.gene52373.t1	AT3G05165	27.778	216	145	3	2	215	196	402	1.84e-20	89.7
MS.gene52373.t1	AT3G05165	27.778	216	145	3	2	215	196	402	2.38e-20	89.4
MS.gene52373.t1	AT3G05165	26.724	232	159	3	2	231	196	418	2.39e-20	89.4
MS.gene52373.t1	AT3G05165	26.724	232	159	3	2	231	196	418	2.39e-20	89.4
MS.gene52373.t1	AT1G08900	29.384	211	140	3	6	215	153	355	1.76e-19	86.7
MS.gene52373.t1	AT1G08900	27.753	227	155	3	6	231	195	413	1.80e-19	86.7
MS.gene52373.t1	AT1G08900	29.384	211	140	3	6	215	187	389	2.22e-19	86.7
MS.gene52373.t1	AT1G08900	29.384	211	140	3	6	215	195	397	2.24e-19	86.7
MS.gene52373.t1	AT1G08900	29.384	211	140	3	6	215	195	397	2.24e-19	86.7
MS.gene52373.t1	AT2G18480	27.347	245	149	7	10	233	203	439	5.70e-19	85.5
MS.gene52373.t1	AT5G18840	24.576	236	156	4	4	231	212	433	7.14e-19	85.1
MS.gene52373.t1	AT1G08930	22.566	226	168	2	6	231	228	446	7.29e-19	85.1
MS.gene52373.t1	AT1G08930	22.566	226	168	2	6	231	228	446	7.29e-19	85.1
MS.gene52373.t1	AT5G27360	25.571	219	156	3	3	221	98	309	3.14e-18	82.8
MS.gene52373.t1	AT5G27360	25.571	219	156	3	3	221	98	309	3.14e-18	82.8
MS.gene52373.t1	AT5G27360	25.114	219	157	2	3	221	250	461	3.83e-18	83.2
MS.gene52373.t1	AT5G16150	26.050	238	155	5	1	233	277	498	3.88e-18	83.2
MS.gene52373.t1	AT5G16150	26.050	238	155	5	1	233	277	498	3.88e-18	83.2
MS.gene52373.t1	AT5G16150	26.050	238	155	5	1	233	277	498	3.88e-18	83.2
MS.gene52373.t1	AT5G27360	25.114	219	157	2	3	221	202	413	4.34e-18	82.8
MS.gene52373.t1	AT4G04750	25.108	231	158	4	6	231	206	426	6.66e-18	82.4
MS.gene52373.t1	AT4G04750	25.108	231	158	4	6	231	206	426	6.66e-18	82.4
MS.gene52373.t1	AT4G04750	25.108	231	158	4	6	231	250	470	7.06e-18	82.4
MS.gene52373.t1	AT4G04760	25.541	231	158	5	6	231	142	363	2.51e-17	80.5
MS.gene52373.t1	AT1G54730	25.328	229	143	3	3	231	199	399	2.57e-17	80.5
MS.gene52373.t1	AT4G04760	25.541	231	158	5	6	231	201	422	2.72e-17	80.5
MS.gene52373.t1	AT1G54730	25.328	229	143	3	3	231	199	399	3.24e-17	80.5
MS.gene52373.t1	AT5G17010	27.897	233	146	6	1	221	224	446	9.57e-17	79.0
MS.gene52373.t1	AT5G17010	27.897	233	146	6	1	221	224	446	9.57e-17	79.0
MS.gene52373.t1	AT5G17010	27.897	233	146	6	1	221	224	446	9.57e-17	79.0
MS.gene52373.t1	AT3G03090	29.412	204	129	5	22	221	254	446	1.60e-16	78.6
MS.gene52373.t1	AT2G48020	30.818	159	105	3	3	159	195	350	2.04e-16	77.8
MS.gene52373.t1	AT1G08890	26.540	211	146	3	6	215	197	399	2.29e-16	77.8
MS.gene52373.t1	AT4G36670	24.409	254	164	6	1	233	189	435	2.56e-16	77.8
MS.gene52373.t1	AT2G48020	29.710	138	94	1	3	140	195	329	1.89e-15	74.7
MS.gene52373.t1	AT1G30220	31.098	164	99	4	6	163	206	361	3.54e-15	74.7
MS.gene52373.t1	AT1G54730	26.108	203	139	3	3	203	199	392	3.98e-15	74.3
MS.gene52373.t1	AT1G54730	26.108	203	139	3	3	203	199	392	3.98e-15	74.3
MS.gene52373.t1	AT1G79820	26.106	226	155	4	7	232	232	445	2.74e-14	72.0
MS.gene52373.t1	AT1G79820	26.106	226	155	4	7	232	232	445	2.74e-14	72.0
MS.gene52373.t1	AT3G05150	27.350	234	152	7	4	231	203	424	3.44e-14	71.6
MS.gene52373.t1	AT3G05150	27.350	234	152	7	4	231	203	424	3.44e-14	71.6
MS.gene52373.t1	AT3G05150	27.350	234	152	7	4	231	203	424	3.50e-14	71.6
MS.gene52373.t1	AT4G04760	23.144	229	163	5	6	231	201	419	4.73e-14	71.2
MS.gene52373.t1	AT2G43330	23.729	236	161	6	7	233	210	435	6.15e-14	70.9
MS.gene52373.t1	AT1G08920	24.896	241	158	5	6	232	202	433	5.57e-13	68.2
MS.gene52373.t1	AT1G67300	24.576	236	147	8	1	225	223	438	9.40e-13	67.4
MS.gene52373.t1	AT1G79820	25.463	216	149	4	7	222	232	435	1.07e-12	67.0
MS.gene52373.t1	AT3G05155	26.812	138	95	2	3	140	194	325	1.59e-12	66.2
MS.gene52373.t1	AT1G54730	27.536	138	97	1	3	140	199	333	2.09e-12	65.9
MS.gene52373.t1	AT1G67300	25.424	236	144	8	1	225	223	437	2.19e-12	66.2
MS.gene52373.t1	AT1G67300	25.424	236	144	8	1	225	223	437	2.19e-12	66.2
MS.gene52373.t1	AT3G20460	25.328	229	164	3	3	231	220	441	2.22e-12	66.2
MS.gene52373.t1	AT1G08920	24.528	212	149	4	6	215	202	404	4.77e-12	65.1
MS.gene52373.t1	AT1G08920	24.194	248	158	5	6	232	202	440	5.31e-12	65.1
MS.gene52373.t1	AT4G16480	26.250	160	108	4	8	158	207	365	1.01e-11	64.3
MS.gene52373.t1	AT4G16480	26.250	160	108	4	8	158	207	365	1.01e-11	64.3
MS.gene52373.t1	AT4G16480	26.250	160	108	4	8	158	207	365	1.01e-11	64.3
MS.gene52373.t1	AT1G54730	28.319	113	81	0	3	115	199	311	1.23e-11	63.5
MS.gene52373.t1	AT1G54730	28.319	113	81	0	3	115	199	311	1.23e-11	63.5
MS.gene52373.t1	AT5G27360	22.222	207	154	2	3	209	202	401	1.47e-11	63.9
MS.gene52373.t1	AT1G54730	24.876	201	123	3	3	203	199	371	1.79e-11	63.5
MS.gene52373.t1	AT5G59250	26.210	248	152	9	1	228	275	511	3.83e-11	62.8

Find 59 sgRNAs with CRISPR-Local

Find 74 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
CCTGTGGTTCTTATATTTAC+AGG	0.188974	3.2:+41561119	None:intergenic
CCTTTAAGACCATATTAAAA+AGG	0.238402	3.2:-41561669	MS.gene52373:CDS
TGTTTATACTCTGCTGGTTT+TGG	0.264387	3.2:-41561188	MS.gene52373:CDS
CTCTTCCATTCTGTGGGCTT+GGG	0.308466	3.2:-41561556	MS.gene52373:CDS
TCTCTTCCATTCTGTGGGCT+TGG	0.312953	3.2:-41561557	MS.gene52373:CDS
CGAAGAATCTTGTTCATAAC+CGG	0.330741	3.2:-41561442	MS.gene52373:CDS
CTATTATGTTTATACTCTGC+TGG	0.362807	3.2:-41561194	MS.gene52373:CDS
CATTATGATGTTTGTCTGCT+TGG	0.369746	3.2:-41561416	MS.gene52373:intron
TTAATTTCTGCCATTGTACT+TGG	0.400667	3.2:-41561520	MS.gene52373:CDS
GCAGTGGTGTCTGGTGTTGA+TGG	0.402312	3.2:-41561260	MS.gene52373:CDS
AAAGCCTTACGCAAAATTAG+AGG	0.410530	3.2:-41561769	MS.gene52373:CDS
CCACGTTCGACTAAGCTGTT+GGG	0.414673	3.2:+41561811	None:intergenic
CCCACAGAATGGAAGAGATT+AGG	0.430797	3.2:+41561562	None:intergenic
CCTAATCTCTTCCATTCTGT+GGG	0.435539	3.2:-41561562	MS.gene52373:CDS
TCCTAATCTCTTCCATTCTG+TGG	0.440720	3.2:-41561563	MS.gene52373:CDS
ACCAAATCGGTCAACAAAAC+CGG	0.441925	3.2:+41561465	None:intergenic
ACCACGTTCGACTAAGCTGT+TGG	0.458442	3.2:+41561810	None:intergenic
TGTTGATACCGGTAAGTTGT+TGG	0.464630	3.2:+41561602	None:intergenic
GTGTCTAACCTTATCTCTGC+CGG	0.472009	3.2:-41561484	MS.gene52373:CDS
GGTCGTGGGGCCCTCTAACA+TGG	0.478479	3.2:-41561163	MS.gene52373:CDS
CTGTGGTTCTTATATTTACA+GGG	0.480105	3.2:+41561120	None:intergenic
TACTAATATTGCATTCCCCT+TGG	0.480612	3.2:+41561223	None:intergenic
ATTGTGCTAGCAGTGGTGTC+TGG	0.481749	3.2:-41561269	MS.gene52373:CDS
CAACAAAACCGGCAGAGATA+AGG	0.483806	3.2:+41561476	None:intergenic
CCGGTAAGTTGTTGGAAAAG+TGG	0.489077	3.2:+41561610	None:intergenic
CCTGCAGTTGTAATGACAAT+TGG	0.493710	3.2:-41561856	None:intergenic
CGGTAAGTTGTTGGAAAAGT+GGG	0.494424	3.2:+41561611	None:intergenic
CTTGGAATAAGCCATGTTAG+AGG	0.494856	3.2:+41561152	None:intergenic
ACAAGATTCTTCGACCAAAT+CGG	0.499677	3.2:+41561452	None:intergenic
AATAGCTATGCTTTGTCCTG+TGG	0.505069	3.2:+41561103	None:intergenic
TTAATAAGTTCTTCTAACTC+AGG	0.509188	3.2:+41561727	None:intergenic
GAAAGCGACGATGTTGATAC+CGG	0.516201	3.2:+41561591	None:intergenic
GGGGAATGCAATATTAGTAT+TGG	0.522711	3.2:-41561219	MS.gene52373:CDS
AATTGGTTCCTTCCTCATAA+CGG	0.526052	3.2:-41561839	MS.gene52373:CDS
CACGTTCGACTAAGCTGTTG+GGG	0.538498	3.2:+41561812	None:intergenic
AAGGGAGTATCGACCTCACT+TGG	0.556645	3.2:-41561650	MS.gene52373:CDS
TTTACAGGGAAAATCTCACT+TGG	0.566699	3.2:+41561134	None:intergenic
CATGTCCCAAGCCCACAGAA+TGG	0.569588	3.2:+41561551	None:intergenic
CCTGTAAATATAAGAACCAC+AGG	0.573263	3.2:-41561119	MS.gene52373:CDS
TCTGTGGGCTTGGGACATGA+CGG	0.580489	3.2:-41561547	MS.gene52373:CDS
TTGGAATAAGCCATGTTAGA+GGG	0.596308	3.2:+41561153	None:intergenic
GAAGAATCTTGTTCATAACC+GGG	0.599176	3.2:-41561441	MS.gene52373:CDS
GACAAACATCATAATGCCCC+CGG	0.601203	3.2:+41561423	None:intergenic
GTATCGACCTCACTTGGTGA+TGG	0.602567	3.2:-41561644	MS.gene52373:CDS
TAACTCAGGTTCAATATCAA+CGG	0.603300	3.2:+41561741	None:intergenic
TGGTACAAATGACATATCCA+AGG	0.605738	3.2:-41561240	MS.gene52373:CDS
GCAAATGCCATCACCAAGTG+AGG	0.611968	3.2:+41561637	None:intergenic
CAGAGATAAGGTTAGACACA+AGG	0.612076	3.2:+41561488	None:intergenic
AAGGTTAGACACAAGGCTAA+CGG	0.616354	3.2:+41561495	None:intergenic
GGTACAAATGACATATCCAA+GGG	0.626581	3.2:-41561239	MS.gene52373:CDS
AAGAATCTTGTTCATAACCG+GGG	0.636667	3.2:-41561440	MS.gene52373:CDS
CCCAACAGCTTAGTCGAACG+TGG	0.654800	3.2:-41561811	MS.gene52373:CDS
AGAATCTTGTTCATAACCGG+GGG	0.669322	3.2:-41561439	MS.gene52373:CDS
CTCAGGTTCAATATCAACGG+AGG	0.672066	3.2:+41561744	None:intergenic
TGTGTCCATTGTGCTAGCAG+TGG	0.678099	3.2:-41561276	MS.gene52373:CDS
AGACACCACTGCTAGCACAA+TGG	0.679999	3.2:+41561271	None:intergenic
GCTAACGGATCCAAGTACAA+TGG	0.704332	3.2:+41561510	None:intergenic
ACGTTCGACTAAGCTGTTGG+GGG	0.743564	3.2:+41561813	None:intergenic
GTACAAATGACATATCCAAG+GGG	0.751900	3.2:-41561238	MS.gene52373:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AATTTAATAAATAGATAGTT+AGG	+	chr3.2:41561522-41561541	None:intergenic	10.0%
!!	ACACAAACAATTTAATTAGT+AGG	+	chr3.2:41561583-41561602	None:intergenic	20.0%
!!!	CTTTAAGACCATATTAAAAA+GGG	-	chr3.2:41561229-41561248	MS.gene52373:CDS	20.0%
!!!	CTTTTTAATATGGTCTTAAA+GGG	+	chr3.2:41561230-41561249	None:intergenic	20.0%
!	TTAATAAGTTCTTCTAACTC+AGG	+	chr3.2:41561173-41561192	None:intergenic	25.0%
!!!	CCTTTAAGACCATATTAAAA+AGG	-	chr3.2:41561228-41561247	MS.gene52373:CDS	25.0%
!!!	CCTTTTTAATATGGTCTTAA+AGG	+	chr3.2:41561231-41561250	None:intergenic	25.0%
	CTATTATGTTTATACTCTGC+TGG	-	chr3.2:41561703-41561722	MS.gene52373:CDS	30.0%
	CTGTGGTTCTTATATTTACA+GGG	+	chr3.2:41561780-41561799	None:intergenic	30.0%
	TAACTCAGGTTCAATATCAA+CGG	+	chr3.2:41561159-41561178	None:intergenic	30.0%
	TTAATTTCTGCCATTGTACT+TGG	-	chr3.2:41561377-41561396	MS.gene52373:intron	30.0%
!	AATTTTGCGTAAGGCTTTTT+TGG	+	chr3.2:41561126-41561145	None:intergenic	30.0%
!	TCGATACTCCCTTTTTAATA+TGG	+	chr3.2:41561240-41561259	None:intergenic	30.0%
	AAAGCCTTACGCAAAATTAG+AGG	-	chr3.2:41561128-41561147	MS.gene52373:CDS	35.0%
	AAGAATCTTGTTCATAACCG+GGG	-	chr3.2:41561457-41561476	MS.gene52373:CDS	35.0%
	ACAAGATTCTTCGACCAAAT+CGG	+	chr3.2:41561448-41561467	None:intergenic	35.0%
	CATTATGATGTTTGTCTGCT+TGG	-	chr3.2:41561481-41561500	MS.gene52373:CDS	35.0%
	CCTGTAAATATAAGAACCAC+AGG	-	chr3.2:41561778-41561797	MS.gene52373:CDS	35.0%
	CCTGTGGTTCTTATATTTAC+AGG	+	chr3.2:41561781-41561800	None:intergenic	35.0%
	CGAAGAATCTTGTTCATAAC+CGG	-	chr3.2:41561455-41561474	MS.gene52373:CDS	35.0%
	GAAGAATCTTGTTCATAACC+GGG	-	chr3.2:41561456-41561475	MS.gene52373:CDS	35.0%
	GGGGAATGCAATATTAGTAT+TGG	-	chr3.2:41561678-41561697	MS.gene52373:CDS	35.0%
	GGTACAAATGACATATCCAA+GGG	-	chr3.2:41561658-41561677	MS.gene52373:CDS	35.0%
	GTACAAATGACATATCCAAG+GGG	-	chr3.2:41561659-41561678	MS.gene52373:CDS	35.0%
	TACTAATATTGCATTCCCCT+TGG	+	chr3.2:41561677-41561696	None:intergenic	35.0%
	TGGTACAAATGACATATCCA+AGG	-	chr3.2:41561657-41561676	MS.gene52373:CDS	35.0%
	TTGGAATAAGCCATGTTAGA+GGG	+	chr3.2:41561747-41561766	None:intergenic	35.0%
	TTTACAGGGAAAATCTCACT+TGG	+	chr3.2:41561766-41561785	None:intergenic	35.0%
!	AATTGGTTCCTTCCTCATAA+CGG	-	chr3.2:41561058-41561077	MS.gene52373:CDS	35.0%
!!!	TGTTTATACTCTGCTGGTTT+TGG	-	chr3.2:41561709-41561728	MS.gene52373:CDS	35.0%
	AAGGTTAGACACAAGGCTAA+CGG	+	chr3.2:41561405-41561424	None:intergenic	40.0%
	AATAGCTATGCTTTGTCCTG+TGG	+	chr3.2:41561797-41561816	None:intergenic	40.0%
	ACCAAATCGGTCAACAAAAC+CGG	+	chr3.2:41561435-41561454	None:intergenic	40.0%
	AGAATCTTGTTCATAACCGG+GGG	-	chr3.2:41561458-41561477	MS.gene52373:CDS	40.0%
	CAGAGATAAGGTTAGACACA+AGG	+	chr3.2:41561412-41561431	None:intergenic	40.0%
	CCTAATCTCTTCCATTCTGT+GGG	-	chr3.2:41561335-41561354	MS.gene52373:intron	40.0%
	CGGTAAGTTGTTGGAAAAGT+GGG	+	chr3.2:41561289-41561308	None:intergenic	40.0%
	CTTGGAATAAGCCATGTTAG+AGG	+	chr3.2:41561748-41561767	None:intergenic	40.0%
	TCCTAATCTCTTCCATTCTG+TGG	-	chr3.2:41561334-41561353	MS.gene52373:intron	40.0%
	TGTTGATACCGGTAAGTTGT+TGG	+	chr3.2:41561298-41561317	None:intergenic	40.0%
!	GGATCCTCTAATTTTGCGTA+AGG	+	chr3.2:41561135-41561154	None:intergenic	40.0%
!!	CCACTTTTCCAACAACTTAC+CGG	-	chr3.2:41561287-41561306	MS.gene52373:intron	40.0%
!!!	TATACTCTGCTGGTTTTGGT+TGG	-	chr3.2:41561713-41561732	MS.gene52373:CDS	40.0%
	CAACAAAACCGGCAGAGATA+AGG	+	chr3.2:41561424-41561443	None:intergenic	45.0%
	CCCACAGAATGGAAGAGATT+AGG	+	chr3.2:41561338-41561357	None:intergenic	45.0%
	CCGGTAAGTTGTTGGAAAAG+TGG	+	chr3.2:41561290-41561309	None:intergenic	45.0%
	CTCAGGTTCAATATCAACGG+AGG	+	chr3.2:41561156-41561175	None:intergenic	45.0%
	GAAAGCGACGATGTTGATAC+CGG	+	chr3.2:41561309-41561328	None:intergenic	45.0%
	GACAAACATCATAATGCCCC+CGG	+	chr3.2:41561477-41561496	None:intergenic	45.0%
	GTGTCTAACCTTATCTCTGC+CGG	-	chr3.2:41561413-41561432	MS.gene52373:intron	45.0%
!	GCTAACGGATCCAAGTACAA+TGG	+	chr3.2:41561390-41561409	None:intergenic	45.0%
	ACCACGTTCGACTAAGCTGT+TGG	+	chr3.2:41561090-41561109	None:intergenic	50.0%
	ACGTTCGACTAAGCTGTTGG+GGG	+	chr3.2:41561087-41561106	None:intergenic	50.0%
	AGACACCACTGCTAGCACAA+TGG	+	chr3.2:41561629-41561648	None:intergenic	50.0%
	ATTGTGCTAGCAGTGGTGTC+TGG	-	chr3.2:41561628-41561647	MS.gene52373:CDS	50.0%
	CACGTTCGACTAAGCTGTTG+GGG	+	chr3.2:41561088-41561107	None:intergenic	50.0%
	CCACGTTCGACTAAGCTGTT+GGG	+	chr3.2:41561089-41561108	None:intergenic	50.0%
	CTCTTCCATTCTGTGGGCTT+GGG	-	chr3.2:41561341-41561360	MS.gene52373:intron	50.0%
	GCAAATGCCATCACCAAGTG+AGG	+	chr3.2:41561263-41561282	None:intergenic	50.0%
	TCTCTTCCATTCTGTGGGCT+TGG	-	chr3.2:41561340-41561359	MS.gene52373:intron	50.0%
	TGTGTCCATTGTGCTAGCAG+TGG	-	chr3.2:41561621-41561640	MS.gene52373:CDS	50.0%
!	GTATCGACCTCACTTGGTGA+TGG	-	chr3.2:41561253-41561272	MS.gene52373:CDS	50.0%
!!	AAGGGAGTATCGACCTCACT+TGG	-	chr3.2:41561247-41561266	MS.gene52373:CDS	50.0%
!!!	GCCGGTTTTGTTGACCGATT+TGG	-	chr3.2:41561431-41561450	MS.gene52373:CDS	50.0%
!!!	TGCTGGTTTTGGTTGGTCGT+GGG	-	chr3.2:41561720-41561739	MS.gene52373:CDS	50.0%
	CATGTCCCAAGCCCACAGAA+TGG	+	chr3.2:41561349-41561368	None:intergenic	55.0%
	CCCAACAGCTTAGTCGAACG+TGG	-	chr3.2:41561086-41561105	MS.gene52373:CDS	55.0%
	TCTGTGGGCTTGGGACATGA+CGG	-	chr3.2:41561350-41561369	MS.gene52373:intron	55.0%
!	GCAGTGGTGTCTGGTGTTGA+TGG	-	chr3.2:41561637-41561656	MS.gene52373:CDS	55.0%
!!	TGTTGGGGGTGTCCGTTATG+AGG	+	chr3.2:41561073-41561092	None:intergenic	55.0%
!!!	CTGCTGGTTTTGGTTGGTCG+TGG	-	chr3.2:41561719-41561738	MS.gene52373:CDS	55.0%
!!!	GCTGGTTTTGGTTGGTCGTG+GGG	-	chr3.2:41561721-41561740	MS.gene52373:CDS	55.0%
!!	GGGGGTGTCCGTTATGAGGA+AGG	+	chr3.2:41561069-41561088	None:intergenic	60.0%
	GGTCGTGGGGCCCTCTAACA+TGG	-	chr3.2:41561734-41561753	MS.gene52373:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
chr3.2	gene	41561053	41561866	41561053	ID=MS.gene52373
chr3.2	mRNA	41561053	41561866	41561053	ID=MS.gene52373.t1;Parent=MS.gene52373
chr3.2	exon	41561417	41561866	41561417	ID=MS.gene52373.t1.exon1;Parent=MS.gene52373.t1
chr3.2	CDS	41561417	41561866	41561417	ID=cds.MS.gene52373.t1;Parent=MS.gene52373.t1
chr3.2	exon	41561053	41561303	41561053	ID=MS.gene52373.t1.exon2;Parent=MS.gene52373.t1
chr3.2	CDS	41561053	41561303	41561053	ID=cds.MS.gene52373.t1;Parent=MS.gene52373.t1

Gene Sequence

>MS.gene52373

ATGACAATTGGTTCCTTCCTCATAACGGACACCCCCAACAGCTTAGTCGAACGTGGTAAGATAGAGCAAGCCAAAAAAGCCTTACGCAAAATTAGAGGATCCTCCGTTGATATTGAACCTGAGTTAGAAGAACTTATTAAGTCGATAGAAATTGCAAAATCAGTGAAACAAGAGCCCTTTAAGACCATATTAAAAAGGGAGTATCGACCTCACTTGGTGATGGCATTTGCAATCCCACTTTTCCAACAACTTACCGGTATCAACATCGTCGCTTTCTATTCTCCTAATCTCTTCCATTCTGTGGGCTTGGGACATGACGGCGCTTTAATTTCTGCCATTGTACTTGGATCCGTTAGCCTTGTGTCTAACCTTATCTCTGCCGGTTTTGTTGACCGATTTGGTCGAAGAATCTTGTTCATAACCGGGGGCATTATGATGTTTGTCTGCTTGGTAAGTGAATTAACAACCTAACTATCTATTTATTAAATTTATTTTCAGTCATAACAAACTATAATATTCATGTGTCACCTACTAATTAAATTGTTTGTGTGAACAATGTGAAGATTGCTGTGTCCATTGTGCTAGCAGTGGTGTCTGGTGTTGATGGTACAAATGACATATCCAAGGGGAATGCAATATTAGTATTGGTGCTATTATGTTTATACTCTGCTGGTTTTGGTTGGTCGTGGGGCCCTCTAACATGGCTTATTCCAAGTGAGATTTTCCCTGTAAATATAAGAACCACAGGACAAAGCATAGCTATTGCTATACAGTTCATAATAGTATTTGTGCTATCACAAACATTCTTGACAAT

Protein sequence

>MS.gene52373.t1

MTIGSFLITDTPNSLVERGKIEQAKKALRKIRGSSVDIEPELEELIKSIEIAKSVKQEPFKTILKREYRPHLVMAFAIPLFQQLTGINIVAFYSPNLFHSVGLGHDGALISAIVLGSVSLVSNLISAGFVDRFGRRILFITGGIMMFVCLIAVSIVLAVVSGVDGTNDISKGNAILVLVLLCLYSAGFGWSWGPLTWLIPSEIFPVNIRTTGQSIAIAIQFIIVFVLSQTFLT