Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53004.t1 | XP_013468709.1 | 89.3 | 673 | 69 | 3 | 1 | 672 | 1 | 671 | 0.00E+00 | 1228 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53004.t1 | Q9SS87 | 25.0 | 688 | 427 | 25 | 42 | 666 | 70 | 731 | 1.1e-44 | 183.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53004.t1 | E2FKJ3 | 89.3 | 673 | 69 | 3 | 1 | 672 | 1 | 671 | 0.0e+00 | 1228.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049989 | MS.gene53004 | 0.82258 | 2.20E-53 | -1.69E-46 |
| MS.gene051423 | MS.gene53004 | 0.802436 | 5.61E-49 | -1.69E-46 |
| MS.gene051955 | MS.gene53004 | 0.814376 | 1.59E-51 | -1.69E-46 |
| MS.gene054118 | MS.gene53004 | 0.820464 | 6.76E-53 | -1.69E-46 |
| MS.gene055777 | MS.gene53004 | 0.806292 | 8.83E-50 | -1.69E-46 |
| MS.gene055957 | MS.gene53004 | 0.805439 | 1.33E-49 | -1.69E-46 |
| MS.gene056041 | MS.gene53004 | 0.823932 | 1.06E-53 | -1.69E-46 |
| MS.gene056042 | MS.gene53004 | 0.825737 | 3.98E-54 | -1.69E-46 |
| MS.gene058196 | MS.gene53004 | 0.813453 | 2.54E-51 | -1.69E-46 |
| MS.gene058197 | MS.gene53004 | 0.81206 | 5.13E-51 | -1.69E-46 |
| MS.gene058198 | MS.gene53004 | 0.815521 | 8.86E-52 | -1.69E-46 |
| MS.gene058823 | MS.gene53004 | 0.80164 | 8.18E-49 | -1.69E-46 |
| MS.gene058853 | MS.gene53004 | 0.816584 | 5.13E-52 | -1.69E-46 |
| MS.gene058909 | MS.gene53004 | 0.809309 | 2.02E-50 | -1.69E-46 |
| MS.gene058912 | MS.gene53004 | 0.808747 | 2.66E-50 | -1.69E-46 |
| MS.gene059300 | MS.gene53004 | 0.815266 | 1.01E-51 | -1.69E-46 |
| MS.gene060473 | MS.gene53004 | 0.807721 | 4.40E-50 | -1.69E-46 |
| MS.gene06057 | MS.gene53004 | 0.801407 | 9.14E-49 | -1.69E-46 |
| MS.gene060825 | MS.gene53004 | 0.855092 | 7.95E-62 | -1.69E-46 |
| MS.gene061260 | MS.gene53004 | 0.811285 | 7.56E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53004.t1 | MTR_1g075153 | 89.302 | 673 | 69 | 3 | 1 | 672 | 1 | 671 | 0.0 | 1237 |
| MS.gene53004.t1 | MTR_1g075180 | 60.407 | 639 | 241 | 9 | 31 | 666 | 9 | 638 | 0.0 | 788 |
| MS.gene53004.t1 | MTR_1g075170 | 53.134 | 670 | 291 | 9 | 16 | 672 | 16 | 675 | 0.0 | 716 |
| MS.gene53004.t1 | MTR_1g040360 | 43.103 | 696 | 357 | 11 | 6 | 672 | 1 | 686 | 0.0 | 559 |
| MS.gene53004.t1 | MTR_1g074950 | 34.249 | 692 | 386 | 21 | 18 | 669 | 6 | 668 | 1.96e-101 | 324 |
| MS.gene53004.t1 | MTR_1g074990 | 29.718 | 673 | 411 | 16 | 33 | 669 | 20 | 666 | 7.07e-90 | 294 |
| MS.gene53004.t1 | MTR_1g075030 | 29.641 | 668 | 408 | 15 | 33 | 663 | 20 | 662 | 1.59e-84 | 280 |
| MS.gene53004.t1 | MTR_1g075095 | 29.940 | 668 | 406 | 16 | 33 | 663 | 20 | 662 | 3.63e-84 | 278 |
| MS.gene53004.t1 | MTR_1g075230 | 28.293 | 668 | 423 | 12 | 33 | 666 | 20 | 665 | 5.58e-83 | 275 |
| MS.gene53004.t1 | MTR_3g075450 | 25.273 | 732 | 441 | 27 | 8 | 662 | 2 | 704 | 4.18e-48 | 180 |
| MS.gene53004.t1 | MTR_7g032660 | 27.760 | 634 | 373 | 23 | 92 | 665 | 104 | 712 | 6.11e-48 | 180 |
| MS.gene53004.t1 | MTR_8g089660 | 26.080 | 625 | 387 | 23 | 92 | 663 | 101 | 703 | 5.40e-41 | 159 |
| MS.gene53004.t1 | MTR_8g063020 | 37.551 | 245 | 124 | 4 | 83 | 315 | 36 | 263 | 8.98e-37 | 140 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53004.t1 | AT3G01680 | 25.040 | 631 | 399 | 21 | 92 | 663 | 113 | 728 | 6.39e-46 | 174 |
| MS.gene53004.t1 | AT3G01670 | 22.826 | 736 | 411 | 24 | 35 | 662 | 134 | 820 | 1.01e-33 | 138 |
| MS.gene53004.t1 | AT3G01670 | 22.826 | 736 | 411 | 24 | 35 | 662 | 158 | 844 | 1.06e-33 | 138 |
| MS.gene53004.t1 | AT1G67790 | 21.255 | 701 | 425 | 23 | 29 | 647 | 2 | 657 | 1.62e-16 | 84.0 |
Find 144 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAATTCCTGTCTTTGTTTAT+TGG | 0.122437 | 1.1:+56238813 | MS.gene53004:CDS |
| TACATCATCTGAAATCTTTC+TGG | 0.136792 | 1.1:-56238675 | None:intergenic |
| GCTTATAGAGAGAGGCTTTC+TGG | 0.142359 | 1.1:+56239177 | MS.gene53004:CDS |
| ACCATATTGCCCACTCTTTC+AGG | 0.142806 | 1.1:-56238736 | None:intergenic |
| GCTGCTTTCACTTTGGAATA+TGG | 0.196918 | 1.1:+56238575 | MS.gene53004:CDS |
| CAAACGATCAACAATATCTT+TGG | 0.212916 | 1.1:-56239388 | None:intergenic |
| CTAACCGTGTTCCAAGTTTC+TGG | 0.231135 | 1.1:+56240667 | MS.gene53004:CDS |
| GCATAGAAGCATTCCCATTT+AGG | 0.255874 | 1.1:+56240055 | MS.gene53004:CDS |
| CCAACTCAAGTGTGAAATCT+TGG | 0.257534 | 1.1:-56240569 | None:intergenic |
| TAAAGAGTATTATGAGATTA+AGG | 0.261690 | 1.1:+56240926 | MS.gene53004:CDS |
| GACTGTGGATTGCGAGATTC+AGG | 0.273949 | 1.1:+56240731 | MS.gene53004:CDS |
| AGCTTCAGTGTAGGAAATTC+TGG | 0.283336 | 1.1:-56238345 | None:intergenic |
| GGACATAACATTAAACTTCT+TGG | 0.288405 | 1.1:+56240816 | MS.gene53004:CDS |
| GTGAATTTGTGGCATTCTTT+TGG | 0.296256 | 1.1:-56237893 | None:intergenic |
| AGTTGAAGTGGAGCTGGCTT+TGG | 0.302256 | 1.1:+56240100 | MS.gene53004:CDS |
| TCAATGTAGCCTATTAATTC+TGG | 0.303319 | 1.1:-56239952 | None:intergenic |
| GGGTTGAACACTGGGATAAT+AGG | 0.303798 | 1.1:-56239982 | None:intergenic |
| TGTGTCCAGTGTTGTACTTC+AGG | 0.307656 | 1.1:+56238040 | MS.gene53004:CDS |
| CTTTGGTTGAGTTTCAGAAT+TGG | 0.315143 | 1.1:+56240862 | MS.gene53004:CDS |
| AATCAAACACCAAGATTGTT+TGG | 0.319195 | 1.1:-56241101 | None:intergenic |
| CAAAACTAACCGATTTAACT+TGG | 0.323657 | 1.1:-56239467 | None:intergenic |
| ACACGTCCACACATAGGATT+TGG | 0.331012 | 1.1:-56241032 | None:intergenic |
| AAACTGGTTACAGAAATCTT+TGG | 0.333186 | 1.1:-56238318 | None:intergenic |
| AATCCGAAAGAACCAATAAA+AGG | 0.336470 | 1.1:+56239775 | MS.gene53004:CDS |
| CAGAAACTTGGAACACGGTT+AGG | 0.346769 | 1.1:-56240666 | None:intergenic |
| ATAAAAGATCCAGAATTAAT+AGG | 0.348273 | 1.1:+56239943 | MS.gene53004:CDS |
| GACAGATACATCTTTATCTA+TGG | 0.353153 | 1.1:+56240525 | MS.gene53004:CDS |
| TTCAGATGATGTAACTGAAT+TGG | 0.354961 | 1.1:+56238685 | MS.gene53004:CDS |
| TCTTTCTGACCCACAGATCT+TGG | 0.357820 | 1.1:+56237953 | MS.gene53004:CDS |
| TGAGAAGTTGGTTGCGCAAC+TGG | 0.359692 | 1.1:+56239206 | MS.gene53004:CDS |
| AGGAAATTCTGGTTTGAAAC+TGG | 0.363197 | 1.1:-56238334 | None:intergenic |
| TTGGCTCAAATTGCTATTAG+TGG | 0.371938 | 1.1:-56237874 | None:intergenic |
| GGAAACTATTTGCACCTTAA+CGG | 0.379564 | 1.1:+56238596 | MS.gene53004:CDS |
| AAACGATCAACAATATCTTT+GGG | 0.385496 | 1.1:-56239387 | None:intergenic |
| GATTGTCCACAAATCTTTGA+AGG | 0.387124 | 1.1:+56239438 | MS.gene53004:CDS |
| CAAGTCCATAGCATCTTCAT+TGG | 0.391630 | 1.1:-56240019 | None:intergenic |
| GCTTCAATTGTTGCTTCTAC+TGG | 0.392927 | 1.1:+56238842 | MS.gene53004:CDS |
| ACTTCTTGGTCACGGTGAAC+CGG | 0.408117 | 1.1:+56240830 | MS.gene53004:CDS |
| CCAAGATTTCACACTTGAGT+TGG | 0.414566 | 1.1:+56240569 | MS.gene53004:CDS |
| ACTGAAGCTGATTTCTTGTC+AGG | 0.416605 | 1.1:+56238359 | MS.gene53004:CDS |
| AAGAGCAACTCCTGGTATAC+AGG | 0.418681 | 1.1:+56240134 | MS.gene53004:CDS |
| ATGGAGGTACCAACAAGAAA+TGG | 0.425568 | 1.1:+56240544 | MS.gene53004:CDS |
| ACCTATAGTTCAAATGTTAT+AGG | 0.425924 | 1.1:+56240996 | MS.gene53004:CDS |
| TTCCTTTAGGGTTGAACACT+GGG | 0.427856 | 1.1:-56239990 | None:intergenic |
| TCATCCCACTTGTTCACAAT+GGG | 0.429462 | 1.1:-56239832 | None:intergenic |
| ATCTTGGATCCATTTCTTGT+TGG | 0.434085 | 1.1:-56240553 | None:intergenic |
| GAAGAATCCATAGTGTTGTT+TGG | 0.438259 | 1.1:-56238505 | None:intergenic |
| TTCTGGCATTGTTGAGAAGT+TGG | 0.438330 | 1.1:+56239194 | MS.gene53004:CDS |
| AACTCTAGCTGCTTTCACTT+TGG | 0.440676 | 1.1:+56238568 | MS.gene53004:CDS |
| GTTGAAGTGGAGCTGGCTTT+GGG | 0.443006 | 1.1:+56240101 | MS.gene53004:CDS |
| TGAATTGGTCAAACATATAG+TGG | 0.443756 | 1.1:+56238700 | MS.gene53004:CDS |
| TGTGGGTCAGAAAGATCAAA+TGG | 0.446611 | 1.1:-56237945 | None:intergenic |
| TCTATACCCATCCAGAAACT+TGG | 0.447489 | 1.1:-56240678 | None:intergenic |
| ACCTATAACATTTGAACTAT+AGG | 0.448924 | 1.1:-56240997 | None:intergenic |
| TCAGAAAGATCAAATGGGTT+TGG | 0.449551 | 1.1:-56237939 | None:intergenic |
| TATTATAACGTCTGCACGCT+TGG | 0.452880 | 1.1:-56240616 | None:intergenic |
| GCATACACCAAACAACACTA+TGG | 0.453423 | 1.1:+56238498 | MS.gene53004:CDS |
| AGGCAATGCCCAAGTTAAAT+CGG | 0.453857 | 1.1:+56239458 | MS.gene53004:CDS |
| GCTTCTACTGGCAACCTTGT+CGG | 0.456049 | 1.1:+56238854 | MS.gene53004:CDS |
| ATCATGTCCCTTTCCAACTT+AGG | 0.457041 | 1.1:+56237843 | None:intergenic |
| GTCAAAGCAGGAACATCAAC+CGG | 0.457526 | 1.1:-56238776 | None:intergenic |
| ACCTGAAAGAGTGGGCAATA+TGG | 0.460958 | 1.1:+56238735 | MS.gene53004:CDS |
| CCGTTGTTGCGACACCGTTA+AGG | 0.465134 | 1.1:-56238610 | None:intergenic |
| AGTGGCACTTCCACCTAAGT+TGG | 0.470174 | 1.1:-56237856 | None:intergenic |
| TTTCACACTTGAGTTGGAAA+AGG | 0.472700 | 1.1:+56240575 | MS.gene53004:CDS |
| CGTGATGAACCAAACAATCT+TGG | 0.480170 | 1.1:+56241092 | MS.gene53004:CDS |
| GACAAAGTGTTGGAGAAAGC+AGG | 0.481405 | 1.1:+56240888 | MS.gene53004:CDS |
| CATCCCATGAGTAAGATCTC+AGG | 0.482917 | 1.1:-56238532 | None:intergenic |
| CACGTCCACACATAGGATTT+GGG | 0.484874 | 1.1:-56241031 | None:intergenic |
| TGAACCGGCTTATCAAACTT+TGG | 0.489587 | 1.1:+56240845 | MS.gene53004:CDS |
| ACCTCAAGTTGAAGTGGAGC+TGG | 0.493519 | 1.1:+56240094 | MS.gene53004:CDS |
| ATTTGTTGCAGGCGCGATAG+AGG | 0.493594 | 1.1:+56239332 | MS.gene53004:intron |
| CAAAACCAATGAAGATGCTA+TGG | 0.494017 | 1.1:+56240014 | MS.gene53004:CDS |
| TCTCATCTTGAATGCTATCA+AGG | 0.496200 | 1.1:-56239714 | None:intergenic |
| ATTCCTTTAGGGTTGAACAC+TGG | 0.496497 | 1.1:-56239991 | None:intergenic |
| ATCCCAGTGTTCAACCCTAA+AGG | 0.500863 | 1.1:+56239988 | MS.gene53004:CDS |
| CAAACATATAGTGGAGATGT+TGG | 0.501391 | 1.1:+56238709 | MS.gene53004:CDS |
| GCATTGCCTTCAAAGATTTG+TGG | 0.502135 | 1.1:-56239444 | None:intergenic |
| ATTGTCCAATAAACAAAGAC+AGG | 0.505333 | 1.1:-56238818 | None:intergenic |
| TCAACCAAAGTTTGATAAGC+CGG | 0.505369 | 1.1:-56240849 | None:intergenic |
| TGCAAGGCGTCTGTCAAAGC+AGG | 0.508357 | 1.1:-56238788 | None:intergenic |
| TTGAGTTGGAAAAGGTCAAA+AGG | 0.509353 | 1.1:+56240583 | MS.gene53004:CDS |
| AAAACTAACCGATTTAACTT+GGG | 0.509360 | 1.1:-56239466 | None:intergenic |
| CCGTGTTCCAAGTTTCTGGA+TGG | 0.510982 | 1.1:+56240671 | MS.gene53004:CDS |
| TCCTATGTGTGGACGTGTGA+TGG | 0.515222 | 1.1:+56241037 | MS.gene53004:CDS |
| TATAATAGAGAATTATCAAG+TGG | 0.519025 | 1.1:+56240632 | MS.gene53004:CDS |
| GTCGCAACAACGGACACACT+TGG | 0.525682 | 1.1:+56238620 | MS.gene53004:CDS |
| AGAAACTTGGAACACGGTTA+GGG | 0.531778 | 1.1:-56240665 | None:intergenic |
| AAAACCTGAGATCTTACTCA+TGG | 0.549235 | 1.1:+56238528 | MS.gene53004:CDS |
| AACATTAAACTTCTTGGTCA+CGG | 0.554079 | 1.1:+56240822 | MS.gene53004:CDS |
| TGTTGGATCACCTGAAAGAG+TGG | 0.559929 | 1.1:+56238726 | MS.gene53004:CDS |
| CGTGTTCCAAGTTTCTGGAT+GGG | 0.560177 | 1.1:+56240672 | MS.gene53004:CDS |
| CACTTCCACCTAAGTTGGAA+AGG | 0.561679 | 1.1:-56237851 | None:intergenic |
| TGATGTGATTCAGGTGAAAG+TGG | 0.562041 | 1.1:+56240503 | MS.gene53004:intron |
| GACAATCAGTTCCATTGCGG+TGG | 0.564546 | 1.1:-56239422 | None:intergenic |
| AGACTCTGTCCAAGATCTGT+GGG | 0.566297 | 1.1:-56237962 | None:intergenic |
| GTCTGCTGAAGGCTATGATC+CGG | 0.567475 | 1.1:+56238757 | MS.gene53004:CDS |
| ACTTCCACCTAAGTTGGAAA+GGG | 0.571991 | 1.1:-56237850 | None:intergenic |
| ATGTCCCTTTCCAACTTAGG+TGG | 0.574423 | 1.1:+56237846 | MS.gene53004:CDS |
| GAATTGGAAAGACAAAGTGT+TGG | 0.576068 | 1.1:+56240878 | MS.gene53004:CDS |
| ACAAAGTGTTGGAGAAAGCA+GGG | 0.576612 | 1.1:+56240889 | MS.gene53004:CDS |
| AAGAAGACTTCAAGATTCTG+TGG | 0.578055 | 1.1:+56239806 | MS.gene53004:CDS |
| GCCAGCTCCACTTCAACTTG+AGG | 0.578077 | 1.1:-56240095 | None:intergenic |
| GTACTAACCTCAAGTTGAAG+TGG | 0.578286 | 1.1:+56240088 | MS.gene53004:CDS |
| AAAGCTTTGATCCACCGCAA+TGG | 0.579125 | 1.1:+56239411 | MS.gene53004:CDS |
| ATCATCCCACTTGTTCACAA+TGG | 0.581732 | 1.1:-56239833 | None:intergenic |
| CTTAGAATAAACCATCCTTG+TGG | 0.583984 | 1.1:-56240789 | None:intergenic |
| GGATGGTTTATTCTAAGCAA+AGG | 0.584169 | 1.1:+56240795 | MS.gene53004:CDS |
| TAGACTCTGTCCAAGATCTG+TGG | 0.589832 | 1.1:-56237963 | None:intergenic |
| GTCATCAAAAGAGCAACTCC+TGG | 0.591771 | 1.1:+56240126 | MS.gene53004:CDS |
| GTGGGTCAGAAAGATCAAAT+GGG | 0.593934 | 1.1:-56237944 | None:intergenic |
| AATTATCAGCTTATAGAGAG+AGG | 0.595338 | 1.1:+56239169 | MS.gene53004:CDS |
| TTCCCATTTAGGAAAAGTGA+TGG | 0.598584 | 1.1:+56240066 | MS.gene53004:CDS |
| CCTTAACGGTGTCGCAACAA+CGG | 0.599300 | 1.1:+56238610 | MS.gene53004:CDS |
| AAAATTCATCATCAGTGACA+TGG | 0.602591 | 1.1:-56237992 | None:intergenic |
| CAAGAAATCAGCTTCAGTGT+AGG | 0.603259 | 1.1:-56238354 | None:intergenic |
| GACTCTTAAAGTTGTTCGTG+CGG | 0.607253 | 1.1:-56239365 | None:intergenic |
| ATCCTTGTGGATCACGTCTG+AGG | 0.611100 | 1.1:-56240776 | None:intergenic |
| AAAGACAGGAATTTCTTGCA+AGG | 0.611562 | 1.1:-56238804 | None:intergenic |
| AAACCTGAGATCTTACTCAT+GGG | 0.614423 | 1.1:+56238529 | MS.gene53004:CDS |
| CAAGAAGCATCAAGAGACTG+TGG | 0.617134 | 1.1:+56240716 | MS.gene53004:CDS |
| GGAATGCTTCTATGCCCCAT+TGG | 0.617439 | 1.1:-56240047 | None:intergenic |
| AAATTCATCATCAGTGACAT+GGG | 0.620681 | 1.1:-56237991 | None:intergenic |
| ATAATAGAGAATTATCAAGT+GGG | 0.621818 | 1.1:+56240633 | MS.gene53004:CDS |
| TCATGCCCAAATCCTATGTG+TGG | 0.622369 | 1.1:+56241026 | MS.gene53004:CDS |
| AATTTCAAAACATTGAAGAG+TGG | 0.627666 | 1.1:+56239868 | MS.gene53004:CDS |
| TGCCTCAGACGTGATCCACA+AGG | 0.631014 | 1.1:+56240774 | MS.gene53004:CDS |
| TGGGCAATATGGTCTGCTGA+AGG | 0.631214 | 1.1:+56238746 | MS.gene53004:CDS |
| GAGAAGTTGGTTGCGCAACT+GGG | 0.641871 | 1.1:+56239207 | MS.gene53004:CDS |
| GTTGGATCACCTGAAAGAGT+GGG | 0.643180 | 1.1:+56238727 | MS.gene53004:CDS |
| TATAACCTGAAGTACAACAC+TGG | 0.646933 | 1.1:-56238045 | None:intergenic |
| CCATCCAGAAACTTGGAACA+CGG | 0.647174 | 1.1:-56240671 | None:intergenic |
| GGATCCCCATTGTGAACAAG+TGG | 0.649592 | 1.1:+56239827 | MS.gene53004:CDS |
| AGATACATCTTTATCTATGG+AGG | 0.650594 | 1.1:+56240528 | MS.gene53004:CDS |
| GATTGTTTGGTTCATCACGA+TGG | 0.650985 | 1.1:-56241088 | None:intergenic |
| TCCATCACACGTCCACACAT+AGG | 0.651294 | 1.1:-56241038 | None:intergenic |
| GTGGACAATCAGTTCCATTG+CGG | 0.652857 | 1.1:-56239425 | None:intergenic |
| TCAGACGTGATCCACAAGGA+TGG | 0.655320 | 1.1:+56240778 | MS.gene53004:CDS |
| GCAATGAGCATCATTACGTG+TGG | 0.675302 | 1.1:-56238477 | None:intergenic |
| AAACTTACGAAACACCGACA+AGG | 0.675763 | 1.1:-56238868 | None:intergenic |
| TATGTGTGGACGTGTGATGG+AGG | 0.691965 | 1.1:+56241040 | MS.gene53004:CDS |
| TCAACATTAAGAACTTCACA+TGG | 0.707918 | 1.1:-56240972 | None:intergenic |
| CATCCCACTTGTTCACAATG+GGG | 0.719744 | 1.1:-56239831 | None:intergenic |
| GATCCCCATTGTGAACAAGT+GGG | 0.735559 | 1.1:+56239828 | MS.gene53004:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TACTTAATATATACATAAAA+GGG | - | chr1.1:56238250-56238269 | None:intergenic | 10.0% |
| !! | TATAAAAATTATAAACAATG+TGG | + | chr1.1:56240209-56240228 | MS.gene53004:intron | 10.0% |
| !!! | ATTTGAATAATTTTGATATA+TGG | + | chr1.1:56240170-56240189 | MS.gene53004:intron | 10.0% |
| !! | CTACTTAATATATACATAAA+AGG | - | chr1.1:56238251-56238270 | None:intergenic | 15.0% |
| !!! | TCATTTTACTTCTTTTTAAT+TGG | - | chr1.1:56240237-56240256 | None:intergenic | 15.0% |
| !!! | TCTAACAATAATATTTTTTG+TGG | - | chr1.1:56239001-56239020 | None:intergenic | 15.0% |
| !! | AATTTATGTCAATGAACTTA+TGG | + | chr1.1:56238175-56238194 | MS.gene53004:intron | 20.0% |
| !! | AGACATTATAACCAATTAAA+GGG | - | chr1.1:56240438-56240457 | None:intergenic | 20.0% |
| !! | ATAAAAGATCCAGAATTAAT+AGG | + | chr1.1:56239943-56239962 | MS.gene53004:CDS | 20.0% |
| !! | ATAATAGAGAATTATCAAGT+GGG | + | chr1.1:56240633-56240652 | MS.gene53004:CDS | 20.0% |
| !! | CCTTGATAAAATAATAACAT+TGG | + | chr1.1:56238199-56238218 | MS.gene53004:intron | 20.0% |
| !! | TATAATAGAGAATTATCAAG+TGG | + | chr1.1:56240632-56240651 | MS.gene53004:CDS | 20.0% |
| !! | TCAAAATTATTCAAATTGTG+AGG | - | chr1.1:56240166-56240185 | None:intergenic | 20.0% |
| !! | TTCATTTATGTAATATTGCA+GGG | + | chr1.1:56239646-56239665 | MS.gene53004:intron | 20.0% |
| !! | TTTAAAGACTTCAATTGATA+TGG | - | chr1.1:56238117-56238136 | None:intergenic | 20.0% |
| !!! | ATGATTATTTTCTGATCAAT+TGG | + | chr1.1:56240253-56240272 | MS.gene53004:intron | 20.0% |
| !!! | ATTACTTATCTTTGTTTTCT+AGG | + | chr1.1:56239139-56239158 | MS.gene53004:intron | 20.0% |
| !!! | CCAATGTTATTATTTTATCA+AGG | - | chr1.1:56238202-56238221 | None:intergenic | 20.0% |
| !!! | TAAAGAGTATTATGAGATTA+AGG | + | chr1.1:56240926-56240945 | MS.gene53004:CDS | 20.0% |
| !!! | TTACTTATCTTTGTTTTCTA+GGG | + | chr1.1:56239140-56239159 | MS.gene53004:intron | 20.0% |
| ! | AAACGATCAACAATATCTTT+GGG | - | chr1.1:56239390-56239409 | None:intergenic | 25.0% |
| ! | AATTTCAAAACATTGAAGAG+TGG | + | chr1.1:56239868-56239887 | MS.gene53004:CDS | 25.0% |
| ! | ACCTATAACATTTGAACTAT+AGG | - | chr1.1:56241000-56241019 | None:intergenic | 25.0% |
| ! | ACCTATAGTTCAAATGTTAT+AGG | + | chr1.1:56240996-56241015 | MS.gene53004:CDS | 25.0% |
| ! | ATCAATTGGTTATACTATCT+TGG | + | chr1.1:56240267-56240286 | MS.gene53004:intron | 25.0% |
| ! | CAGACATTATAACCAATTAA+AGG | - | chr1.1:56240439-56240458 | None:intergenic | 25.0% |
| ! | GTTCATTTATGTAATATTGC+AGG | + | chr1.1:56239645-56239664 | MS.gene53004:intron | 25.0% |
| ! | TGTGTTATCTTAGTAGATTA+AGG | + | chr1.1:56238400-56238419 | MS.gene53004:intron | 25.0% |
| ! | TTGATATTACGGAAAAATGT+GGG | + | chr1.1:56238917-56238936 | MS.gene53004:intron | 25.0% |
| !! | AAAACTAACCGATTTAACTT+GGG | - | chr1.1:56239469-56239488 | None:intergenic | 25.0% |
| !! | AAATTCCTGTCTTTGTTTAT+TGG | + | chr1.1:56238813-56238832 | MS.gene53004:CDS | 25.0% |
| !! | TCTTTCTTGAAACCTTTTAT+TGG | - | chr1.1:56239790-56239809 | None:intergenic | 25.0% |
| !!! | AAACCTTTTATTGGTTCTTT+CGG | - | chr1.1:56239781-56239800 | None:intergenic | 25.0% |
| !!! | ATGTTTTGAAATTTTCTCTC+TGG | - | chr1.1:56239861-56239880 | None:intergenic | 25.0% |
| !!! | TTAGTTTTGAAACATGTAGT+AGG | + | chr1.1:56239481-56239500 | MS.gene53004:intron | 25.0% |
| !!! | TTTTTGTTGTAGTGAATTTG+TGG | - | chr1.1:56237907-56237926 | None:intergenic | 25.0% |
| AAAATTCATCATCAGTGACA+TGG | - | chr1.1:56237995-56238014 | None:intergenic | 30.0% | |
| AAACTGGTTACAGAAATCTT+TGG | - | chr1.1:56238321-56238340 | None:intergenic | 30.0% | |
| AAATTCATCATCAGTGACAT+GGG | - | chr1.1:56237994-56238013 | None:intergenic | 30.0% | |
| AACATTAAACTTCTTGGTCA+CGG | + | chr1.1:56240822-56240841 | MS.gene53004:CDS | 30.0% | |
| AATCCGAAAGAACCAATAAA+AGG | + | chr1.1:56239775-56239794 | MS.gene53004:CDS | 30.0% | |
| AATTATCAGCTTATAGAGAG+AGG | + | chr1.1:56239169-56239188 | MS.gene53004:CDS | 30.0% | |
| ACCTGAATCACATCATTAAA+TGG | - | chr1.1:56240498-56240517 | None:intergenic | 30.0% | |
| AGATACATCTTTATCTATGG+AGG | + | chr1.1:56240528-56240547 | MS.gene53004:CDS | 30.0% | |
| ATTGTCCAATAAACAAAGAC+AGG | - | chr1.1:56238821-56238840 | None:intergenic | 30.0% | |
| ATTTGTGATCAAAATCTCAG+AGG | - | chr1.1:56239287-56239306 | None:intergenic | 30.0% | |
| CAAACGATCAACAATATCTT+TGG | - | chr1.1:56239391-56239410 | None:intergenic | 30.0% | |
| CTATGCAAACCTTGATATTA+CGG | + | chr1.1:56238906-56238925 | MS.gene53004:intron | 30.0% | |
| CTTGATATTACGGAAAAATG+TGG | + | chr1.1:56238916-56238935 | MS.gene53004:intron | 30.0% | |
| GAATAGTCTGCAAAACAATT+TGG | - | chr1.1:56238299-56238318 | None:intergenic | 30.0% | |
| GACAGATACATCTTTATCTA+TGG | + | chr1.1:56240525-56240544 | MS.gene53004:CDS | 30.0% | |
| GGACATAACATTAAACTTCT+TGG | + | chr1.1:56240816-56240835 | MS.gene53004:CDS | 30.0% | |
| TCAACATTAAGAACTTCACA+TGG | - | chr1.1:56240975-56240994 | None:intergenic | 30.0% | |
| TCAATGTAGCCTATTAATTC+TGG | - | chr1.1:56239955-56239974 | None:intergenic | 30.0% | |
| TCCATTTAATGATGTGATTC+AGG | + | chr1.1:56240494-56240513 | MS.gene53004:intron | 30.0% | |
| TGAATTGGTCAAACATATAG+TGG | + | chr1.1:56238700-56238719 | MS.gene53004:CDS | 30.0% | |
| TTCAGATGATGTAACTGAAT+TGG | + | chr1.1:56238685-56238704 | MS.gene53004:CDS | 30.0% | |
| TTTGTGATCAAAATCTCAGA+GGG | - | chr1.1:56239286-56239305 | None:intergenic | 30.0% | |
| ! | AGCTTATATCTATTTGTTGC+AGG | + | chr1.1:56239321-56239340 | MS.gene53004:intron | 30.0% |
| ! | CAAAACTAACCGATTTAACT+TGG | - | chr1.1:56239470-56239489 | None:intergenic | 30.0% |
| ! | CACATTTTTCCGTAATATCA+AGG | - | chr1.1:56238918-56238937 | None:intergenic | 30.0% |
| ! | CTGGATCTTTTATTATCTTG+AGG | - | chr1.1:56239936-56239955 | None:intergenic | 30.0% |
| ! | TACATCATCTGAAATCTTTC+TGG | - | chr1.1:56238678-56238697 | None:intergenic | 30.0% |
| ! | TATGGACTTGATTTTCCAAT+GGG | + | chr1.1:56240032-56240051 | MS.gene53004:CDS | 30.0% |
| ! | TGGCATCAAATTTTATGTAG+TGG | + | chr1.1:56239888-56239907 | MS.gene53004:CDS | 30.0% |
| !! | TACCATCACTTTTCCTAAAT+GGG | - | chr1.1:56240071-56240090 | None:intergenic | 30.0% |
| !!! | CATTGGTTTTGATTCCTTTA+GGG | - | chr1.1:56240005-56240024 | None:intergenic | 30.0% |
| !!! | TCATTGGTTTTGATTCCTTT+AGG | - | chr1.1:56240006-56240025 | None:intergenic | 30.0% |
| AAAACCTGAGATCTTACTCA+TGG | + | chr1.1:56238528-56238547 | MS.gene53004:CDS | 35.0% | |
| AAACCTGAGATCTTACTCAT+GGG | + | chr1.1:56238529-56238548 | MS.gene53004:CDS | 35.0% | |
| AAAGACAGGAATTTCTTGCA+AGG | - | chr1.1:56238807-56238826 | None:intergenic | 35.0% | |
| AAGAAGACTTCAAGATTCTG+TGG | + | chr1.1:56239806-56239825 | MS.gene53004:CDS | 35.0% | |
| ATCTTGGATCCATTTCTTGT+TGG | - | chr1.1:56240556-56240575 | None:intergenic | 35.0% | |
| CAAAACCAATGAAGATGCTA+TGG | + | chr1.1:56240014-56240033 | MS.gene53004:CDS | 35.0% | |
| CTTAGAATAAACCATCCTTG+TGG | - | chr1.1:56240792-56240811 | None:intergenic | 35.0% | |
| CTTTGGTTGAGTTTCAGAAT+TGG | + | chr1.1:56240862-56240881 | MS.gene53004:CDS | 35.0% | |
| GAATTGGAAAGACAAAGTGT+TGG | + | chr1.1:56240878-56240897 | MS.gene53004:CDS | 35.0% | |
| GATTGTCCACAAATCTTTGA+AGG | + | chr1.1:56239438-56239457 | MS.gene53004:CDS | 35.0% | |
| GGAAACTATTTGCACCTTAA+CGG | + | chr1.1:56238596-56238615 | MS.gene53004:CDS | 35.0% | |
| GGATGGTTTATTCTAAGCAA+AGG | + | chr1.1:56240795-56240814 | MS.gene53004:CDS | 35.0% | |
| TAACCAATTAAAGGGCAATC+TGG | - | chr1.1:56240430-56240449 | None:intergenic | 35.0% | |
| TATAACCTGAAGTACAACAC+TGG | - | chr1.1:56238048-56238067 | None:intergenic | 35.0% | |
| TCAACCAAAGTTTGATAAGC+CGG | - | chr1.1:56240852-56240871 | None:intergenic | 35.0% | |
| TCTCATCTTGAATGCTATCA+AGG | - | chr1.1:56239717-56239736 | None:intergenic | 35.0% | |
| TTATACTATCTTGGCGCAAT+TGG | + | chr1.1:56240276-56240295 | MS.gene53004:intron | 35.0% | |
| TTCCCATTTAGGAAAAGTGA+TGG | + | chr1.1:56240066-56240085 | MS.gene53004:CDS | 35.0% | |
| ! | ATGGACTTGATTTTCCAATG+GGG | + | chr1.1:56240033-56240052 | MS.gene53004:CDS | 35.0% |
| ! | CAAACATATAGTGGAGATGT+TGG | + | chr1.1:56238709-56238728 | MS.gene53004:CDS | 35.0% |
| ! | CGGTGTTTCGTAAGTTTTTA+TGG | + | chr1.1:56238874-56238893 | MS.gene53004:intron | 35.0% |
| ! | CTATGGACTTGATTTTCCAA+TGG | + | chr1.1:56240031-56240050 | MS.gene53004:CDS | 35.0% |
| ! | GAAGAATCCATAGTGTTGTT+TGG | - | chr1.1:56238508-56238527 | None:intergenic | 35.0% |
| ! | GTGAATTTGTGGCATTCTTT+TGG | - | chr1.1:56237896-56237915 | None:intergenic | 35.0% |
| ! | TCAGAAAGATCAAATGGGTT+TGG | - | chr1.1:56237942-56237961 | None:intergenic | 35.0% |
| ! | TCTTTTATTATCTTGAGGCC+TGG | - | chr1.1:56239931-56239950 | None:intergenic | 35.0% |
| ! | TTGGCTCAAATTGCTATTAG+TGG | - | chr1.1:56237877-56237896 | None:intergenic | 35.0% |
| !! | AGGAAATTCTGGTTTGAAAC+TGG | - | chr1.1:56238337-56238356 | None:intergenic | 35.0% |
| !! | GTACCATCACTTTTCCTAAA+TGG | - | chr1.1:56240072-56240091 | None:intergenic | 35.0% |
| !! | TTGAGTTGGAAAAGGTCAAA+AGG | + | chr1.1:56240583-56240602 | MS.gene53004:CDS | 35.0% |
| !! | TTTCACACTTGAGTTGGAAA+AGG | + | chr1.1:56240575-56240594 | MS.gene53004:CDS | 35.0% |
| AAACTTACGAAACACCGACA+AGG | - | chr1.1:56238871-56238890 | None:intergenic | 40.0% | |
| ACACCAGATTGCCCTTTAAT+TGG | + | chr1.1:56240424-56240443 | MS.gene53004:intron | 40.0% | |
| ACTAAAACTTCAGCATACGC+AGG | - | chr1.1:56240404-56240423 | None:intergenic | 40.0% | |
| AGAAACTTGGAACACGGTTA+GGG | - | chr1.1:56240668-56240687 | None:intergenic | 40.0% | |
| AGCTTCAGTGTAGGAAATTC+TGG | - | chr1.1:56238348-56238367 | None:intergenic | 40.0% | |
| AGGCAATGCCCAAGTTAAAT+CGG | + | chr1.1:56239458-56239477 | MS.gene53004:CDS | 40.0% | |
| ATCATCCCACTTGTTCACAA+TGG | - | chr1.1:56239836-56239855 | None:intergenic | 40.0% | |
| CAAGAAATCAGCTTCAGTGT+AGG | - | chr1.1:56238357-56238376 | None:intergenic | 40.0% | |
| CAAGTCCATAGCATCTTCAT+TGG | - | chr1.1:56240022-56240041 | None:intergenic | 40.0% | |
| CCAACTCAAGTGTGAAATCT+TGG | - | chr1.1:56240572-56240591 | None:intergenic | 40.0% | |
| CCAAGATTTCACACTTGAGT+TGG | + | chr1.1:56240569-56240588 | MS.gene53004:CDS | 40.0% | |
| CGTGATGAACCAAACAATCT+TGG | + | chr1.1:56241092-56241111 | MS.gene53004:CDS | 40.0% | |
| CTAAAACTTCAGCATACGCA+GGG | - | chr1.1:56240403-56240422 | None:intergenic | 40.0% | |
| GACTCTTAAAGTTGTTCGTG+CGG | - | chr1.1:56239368-56239387 | None:intergenic | 40.0% | |
| GCATACACCAAACAACACTA+TGG | + | chr1.1:56238498-56238517 | MS.gene53004:CDS | 40.0% | |
| GCATTGCCTTCAAAGATTTG+TGG | - | chr1.1:56239447-56239466 | None:intergenic | 40.0% | |
| GCTGCATACAATACACCAAA+TGG | + | chr1.1:56240360-56240379 | MS.gene53004:intron | 40.0% | |
| GTGGGAAACAATGACTAATG+TGG | + | chr1.1:56238935-56238954 | MS.gene53004:intron | 40.0% | |
| GTGGGTCAGAAAGATCAAAT+GGG | - | chr1.1:56237947-56237966 | None:intergenic | 40.0% | |
| GTTGATGTCATGTGACTGAA+AGG | + | chr1.1:56240303-56240322 | MS.gene53004:intron | 40.0% | |
| TATTATAACGTCTGCACGCT+TGG | - | chr1.1:56240619-56240638 | None:intergenic | 40.0% | |
| TCATCCCACTTGTTCACAAT+GGG | - | chr1.1:56239835-56239854 | None:intergenic | 40.0% | |
| TCTATACCCATCCAGAAACT+TGG | - | chr1.1:56240681-56240700 | None:intergenic | 40.0% | |
| TGATGTGATTCAGGTGAAAG+TGG | + | chr1.1:56240503-56240522 | MS.gene53004:intron | 40.0% | |
| TGTGGGTCAGAAAGATCAAA+TGG | - | chr1.1:56237948-56237967 | None:intergenic | 40.0% | |
| TTCTGGCATTGTTGAGAAGT+TGG | + | chr1.1:56239194-56239213 | MS.gene53004:CDS | 40.0% | |
| ! | AACTCTAGCTGCTTTCACTT+TGG | + | chr1.1:56238568-56238587 | MS.gene53004:CDS | 40.0% |
| ! | ACTGAAGCTGATTTCTTGTC+AGG | + | chr1.1:56238359-56238378 | MS.gene53004:CDS | 40.0% |
| ! | ACTTCCACCTAAGTTGGAAA+GGG | - | chr1.1:56237853-56237872 | None:intergenic | 40.0% |
| ! | GAGGTTTTTACCTGTATACC+AGG | - | chr1.1:56240147-56240166 | None:intergenic | 40.0% |
| ! | GAGTACTTTTCTGAGTTACC+AGG | + | chr1.1:56239910-56239929 | MS.gene53004:CDS | 40.0% |
| ! | GATTGTTTGGTTCATCACGA+TGG | - | chr1.1:56241091-56241110 | None:intergenic | 40.0% |
| ! | GCTTCAATTGTTGCTTCTAC+TGG | + | chr1.1:56238842-56238861 | MS.gene53004:CDS | 40.0% |
| ! | TGAACCGGCTTATCAAACTT+TGG | + | chr1.1:56240845-56240864 | MS.gene53004:CDS | 40.0% |
| !! | ACAAAGTGTTGGAGAAAGCA+GGG | + | chr1.1:56240889-56240908 | MS.gene53004:CDS | 40.0% |
| !! | ATGGAGGTACCAACAAGAAA+TGG | + | chr1.1:56240544-56240563 | MS.gene53004:CDS | 40.0% |
| !! | ATTCCTTTAGGGTTGAACAC+TGG | - | chr1.1:56239994-56240013 | None:intergenic | 40.0% |
| !! | GCATAGAAGCATTCCCATTT+AGG | + | chr1.1:56240055-56240074 | MS.gene53004:CDS | 40.0% |
| !! | GCTGCTTTCACTTTGGAATA+TGG | + | chr1.1:56238575-56238594 | MS.gene53004:CDS | 40.0% |
| !! | GTACTAACCTCAAGTTGAAG+TGG | + | chr1.1:56240088-56240107 | MS.gene53004:CDS | 40.0% |
| !! | TTCCTTTAGGGTTGAACACT+GGG | - | chr1.1:56239993-56240012 | None:intergenic | 40.0% |
| AAGAGCAACTCCTGGTATAC+AGG | + | chr1.1:56240134-56240153 | MS.gene53004:CDS | 45.0% | |
| ACACGTCCACACATAGGATT+TGG | - | chr1.1:56241035-56241054 | None:intergenic | 45.0% | |
| ACCATATTGCCCACTCTTTC+AGG | - | chr1.1:56238739-56238758 | None:intergenic | 45.0% | |
| ACCTGAAAGAGTGGGCAATA+TGG | + | chr1.1:56238735-56238754 | MS.gene53004:CDS | 45.0% | |
| AGACTCTGTCCAAGATCTGT+GGG | - | chr1.1:56237965-56237984 | None:intergenic | 45.0% | |
| ATCCCAGTGTTCAACCCTAA+AGG | + | chr1.1:56239988-56240007 | MS.gene53004:CDS | 45.0% | |
| ATGTCCCTTTCCAACTTAGG+TGG | + | chr1.1:56237846-56237865 | MS.gene53004:CDS | 45.0% | |
| CAATCATTTGCGCTAGACCT+CGG | + | chr1.1:56239553-56239572 | MS.gene53004:intron | 45.0% | |
| CACGTCCACACATAGGATTT+GGG | - | chr1.1:56241034-56241053 | None:intergenic | 45.0% | |
| CAGAAACTTGGAACACGGTT+AGG | - | chr1.1:56240669-56240688 | None:intergenic | 45.0% | |
| CATCCCACTTGTTCACAATG+GGG | - | chr1.1:56239834-56239853 | None:intergenic | 45.0% | |
| CATCCCATGAGTAAGATCTC+AGG | - | chr1.1:56238535-56238554 | None:intergenic | 45.0% | |
| CCATCCAGAAACTTGGAACA+CGG | - | chr1.1:56240674-56240693 | None:intergenic | 45.0% | |
| CTAACCGTGTTCCAAGTTTC+TGG | + | chr1.1:56240667-56240686 | MS.gene53004:CDS | 45.0% | |
| GACTAATGTGGCCACAATTG+CGG | + | chr1.1:56238947-56238966 | MS.gene53004:intron | 45.0% | |
| GATCCCCATTGTGAACAAGT+GGG | + | chr1.1:56239828-56239847 | MS.gene53004:CDS | 45.0% | |
| GCAATGAGCATCATTACGTG+TGG | - | chr1.1:56238480-56238499 | None:intergenic | 45.0% | |
| GCTTATAGAGAGAGGCTTTC+TGG | + | chr1.1:56239177-56239196 | MS.gene53004:CDS | 45.0% | |
| GGGTTGAACACTGGGATAAT+AGG | - | chr1.1:56239985-56240004 | None:intergenic | 45.0% | |
| GTATTGTATGCAGCCTTACC+TGG | - | chr1.1:56240354-56240373 | None:intergenic | 45.0% | |
| GTCAAAGCAGGAACATCAAC+CGG | - | chr1.1:56238779-56238798 | None:intergenic | 45.0% | |
| GTCATCAAAAGAGCAACTCC+TGG | + | chr1.1:56240126-56240145 | MS.gene53004:CDS | 45.0% | |
| GTCATGTGACTGAAAGGTCA+CGG | + | chr1.1:56240309-56240328 | MS.gene53004:intron | 45.0% | |
| GTGGACAATCAGTTCCATTG+CGG | - | chr1.1:56239428-56239447 | None:intergenic | 45.0% | |
| GTTGGATCACCTGAAAGAGT+GGG | + | chr1.1:56238727-56238746 | MS.gene53004:CDS | 45.0% | |
| TAGACTCTGTCCAAGATCTG+TGG | - | chr1.1:56237966-56237985 | None:intergenic | 45.0% | |
| TCATGCCCAAATCCTATGTG+TGG | + | chr1.1:56241026-56241045 | MS.gene53004:CDS | 45.0% | |
| TCATGTGACTGAAAGGTCAC+GGG | + | chr1.1:56240310-56240329 | MS.gene53004:intron | 45.0% | |
| TCTTTCTGACCCACAGATCT+TGG | + | chr1.1:56237953-56237972 | MS.gene53004:CDS | 45.0% | |
| TGTGTCCAGTGTTGTACTTC+AGG | + | chr1.1:56238040-56238059 | MS.gene53004:CDS | 45.0% | |
| TGTTGGATCACCTGAAAGAG+TGG | + | chr1.1:56238726-56238745 | MS.gene53004:CDS | 45.0% | |
| ! | AAAGCTTTGATCCACCGCAA+TGG | + | chr1.1:56239411-56239430 | MS.gene53004:CDS | 45.0% |
| ! | CACTTCCACCTAAGTTGGAA+AGG | - | chr1.1:56237854-56237873 | None:intergenic | 45.0% |
| ! | CGTGTTCCAAGTTTCTGGAT+GGG | + | chr1.1:56240672-56240691 | MS.gene53004:CDS | 45.0% |
| ! | TGCGAGTGCTGTAAACTCTA+AGG | - | chr1.1:56239521-56239540 | None:intergenic | 45.0% |
| !! | CAAGAAGCATCAAGAGACTG+TGG | + | chr1.1:56240716-56240735 | MS.gene53004:CDS | 45.0% |
| !! | GACAAAGTGTTGGAGAAAGC+AGG | + | chr1.1:56240888-56240907 | MS.gene53004:CDS | 45.0% |
| AACTTCAGCATACGCAGGGT+CGG | - | chr1.1:56240399-56240418 | None:intergenic | 50.0% | |
| ACTTCTTGGTCACGGTGAAC+CGG | + | chr1.1:56240830-56240849 | MS.gene53004:CDS | 50.0% | |
| AGTGGCACTTCCACCTAAGT+TGG | - | chr1.1:56237859-56237878 | None:intergenic | 50.0% | |
| ATCCTTGTGGATCACGTCTG+AGG | - | chr1.1:56240779-56240798 | None:intergenic | 50.0% | |
| CAGCATCACAACCGCAATTG+TGG | - | chr1.1:56238961-56238980 | None:intergenic | 50.0% | |
| CGAGGTCTAGCGCAAATGAT+TGG | - | chr1.1:56239555-56239574 | None:intergenic | 50.0% | |
| GACAATCAGTTCCATTGCGG+TGG | - | chr1.1:56239425-56239444 | None:intergenic | 50.0% | |
| GCTTCTACTGGCAACCTTGT+CGG | + | chr1.1:56238854-56238873 | MS.gene53004:CDS | 50.0% | |
| GGAATGCTTCTATGCCCCAT+TGG | - | chr1.1:56240050-56240069 | None:intergenic | 50.0% | |
| GGATCCCCATTGTGAACAAG+TGG | + | chr1.1:56239827-56239846 | MS.gene53004:CDS | 50.0% | |
| GTCTGCTGAAGGCTATGATC+CGG | + | chr1.1:56238757-56238776 | MS.gene53004:CDS | 50.0% | |
| TAATGCATGTTGCACCACCG+AGG | - | chr1.1:56239573-56239592 | None:intergenic | 50.0% | |
| TATGTGTGGACGTGTGATGG+AGG | + | chr1.1:56241040-56241059 | MS.gene53004:CDS | 50.0% | |
| TCAGACGTGATCCACAAGGA+TGG | + | chr1.1:56240778-56240797 | MS.gene53004:CDS | 50.0% | |
| TCCATCACACGTCCACACAT+AGG | - | chr1.1:56241041-56241060 | None:intergenic | 50.0% | |
| TCCTATGTGTGGACGTGTGA+TGG | + | chr1.1:56241037-56241056 | MS.gene53004:CDS | 50.0% | |
| TGGGCAATATGGTCTGCTGA+AGG | + | chr1.1:56238746-56238765 | MS.gene53004:CDS | 50.0% | |
| TTCAAGTCCTGGAAACAGCC+AGG | + | chr1.1:56240333-56240352 | MS.gene53004:intron | 50.0% | |
| ! | AGTTGAAGTGGAGCTGGCTT+TGG | + | chr1.1:56240100-56240119 | MS.gene53004:CDS | 50.0% |
| ! | ATTTGTTGCAGGCGCGATAG+AGG | + | chr1.1:56239332-56239351 | MS.gene53004:intron | 50.0% |
| ! | CCGTGTTCCAAGTTTCTGGA+TGG | + | chr1.1:56240671-56240690 | MS.gene53004:CDS | 50.0% |
| ! | GACTGTGGATTGCGAGATTC+AGG | + | chr1.1:56240731-56240750 | MS.gene53004:CDS | 50.0% |
| ! | GAGAAGTTGGTTGCGCAACT+GGG | + | chr1.1:56239207-56239226 | MS.gene53004:CDS | 50.0% |
| ! | TGAGAAGTTGGTTGCGCAAC+TGG | + | chr1.1:56239206-56239225 | MS.gene53004:CDS | 50.0% |
| !! | ACCTCAAGTTGAAGTGGAGC+TGG | + | chr1.1:56240094-56240113 | MS.gene53004:CDS | 50.0% |
| !! | CCTTAACGGTGTCGCAACAA+CGG | + | chr1.1:56238610-56238629 | MS.gene53004:CDS | 50.0% |
| !! | GTTGAAGTGGAGCTGGCTTT+GGG | + | chr1.1:56240101-56240120 | MS.gene53004:CDS | 50.0% |
| AAGGTCACGGGTTCAAGTCC+TGG | + | chr1.1:56240322-56240341 | MS.gene53004:intron | 55.0% | |
| CCGTTGTTGCGACACCGTTA+AGG | - | chr1.1:56238613-56238632 | None:intergenic | 55.0% | |
| GCCAGCTCCACTTCAACTTG+AGG | - | chr1.1:56240098-56240117 | None:intergenic | 55.0% | |
| GGAGAAGGGGTCTCACCATT+TGG | - | chr1.1:56240378-56240397 | None:intergenic | 55.0% | |
| GTCCTGGAAACAGCCAGGTA+AGG | + | chr1.1:56240338-56240357 | MS.gene53004:intron | 55.0% | |
| GTCGCAACAACGGACACACT+TGG | + | chr1.1:56238620-56238639 | MS.gene53004:CDS | 55.0% | |
| TCATTTGCGCTAGACCTCGG+TGG | + | chr1.1:56239556-56239575 | MS.gene53004:intron | 55.0% | |
| TGCCTCAGACGTGATCCACA+AGG | + | chr1.1:56240774-56240793 | MS.gene53004:CDS | 55.0% | |
| TTGCGGTTGTGATGCTGTCG+TGG | + | chr1.1:56238964-56238983 | MS.gene53004:intron | 55.0% | |
| ! | AGCCTTACCTGGCTGTTTCC+AGG | - | chr1.1:56240343-56240362 | None:intergenic | 55.0% |
| ! | GTGATGCTGTCGTGGTCTTG+TGG | + | chr1.1:56238972-56238991 | MS.gene53004:intron | 55.0% |
| ! | TGCAAGGCGTCTGTCAAAGC+AGG | - | chr1.1:56238791-56238810 | None:intergenic | 55.0% |
| AGCATACGCAGGGTCGGAGA+AGG | - | chr1.1:56240393-56240412 | None:intergenic | 60.0% | |
| CATACGCAGGGTCGGAGAAG+GGG | - | chr1.1:56240391-56240410 | None:intergenic | 60.0% | |
| GCATACGCAGGGTCGGAGAA+GGG | - | chr1.1:56240392-56240411 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 56237846 | 56241121 | 56237846 | ID=MS.gene53004 |
| chr1.1 | mRNA | 56237846 | 56241121 | 56237846 | ID=MS.gene53004.t1;Parent=MS.gene53004 |
| chr1.1 | exon | 56237846 | 56238061 | 56237846 | ID=MS.gene53004.t1.exon1;Parent=MS.gene53004.t1 |
| chr1.1 | CDS | 56237846 | 56238061 | 56237846 | ID=cds.MS.gene53004.t1;Parent=MS.gene53004.t1 |
| chr1.1 | exon | 56238312 | 56238380 | 56238312 | ID=MS.gene53004.t1.exon2;Parent=MS.gene53004.t1 |
| chr1.1 | CDS | 56238312 | 56238380 | 56238312 | ID=cds.MS.gene53004.t1;Parent=MS.gene53004.t1 |
| chr1.1 | exon | 56238470 | 56238882 | 56238470 | ID=MS.gene53004.t1.exon3;Parent=MS.gene53004.t1 |
| chr1.1 | CDS | 56238470 | 56238882 | 56238470 | ID=cds.MS.gene53004.t1;Parent=MS.gene53004.t1 |
| chr1.1 | exon | 56239161 | 56239249 | 56239161 | ID=MS.gene53004.t1.exon4;Parent=MS.gene53004.t1 |
| chr1.1 | CDS | 56239161 | 56239249 | 56239161 | ID=cds.MS.gene53004.t1;Parent=MS.gene53004.t1 |
| chr1.1 | exon | 56239343 | 56239479 | 56239343 | ID=MS.gene53004.t1.exon5;Parent=MS.gene53004.t1 |
| chr1.1 | CDS | 56239343 | 56239479 | 56239343 | ID=cds.MS.gene53004.t1;Parent=MS.gene53004.t1 |
| chr1.1 | exon | 56239667 | 56240155 | 56239667 | ID=MS.gene53004.t1.exon6;Parent=MS.gene53004.t1 |
| chr1.1 | CDS | 56239667 | 56240155 | 56239667 | ID=cds.MS.gene53004.t1;Parent=MS.gene53004.t1 |
| chr1.1 | exon | 56240516 | 56241121 | 56240516 | ID=MS.gene53004.t1.exon7;Parent=MS.gene53004.t1 |
| chr1.1 | CDS | 56240516 | 56241121 | 56240516 | ID=cds.MS.gene53004.t1;Parent=MS.gene53004.t1 |
| Gene Sequence |
| Protein sequence |
