Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53317.t1 | AET01724.2 | 61.9 | 541 | 181 | 9 | 11 | 542 | 33 | 557 | 1.10E-171 | 613.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53317.t1 | O82500 | 34.6 | 532 | 315 | 7 | 19 | 544 | 10 | 514 | 1.9e-82 | 308.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53317.t1 | G7L6S0 | 61.9 | 541 | 181 | 9 | 11 | 542 | 33 | 557 | 8.3e-172 | 613.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049758 | MS.gene53317 | 0.814631 | 1.40E-51 | -1.69E-46 |
| MS.gene049910 | MS.gene53317 | 0.814014 | 1.91E-51 | -1.69E-46 |
| MS.gene050226 | MS.gene53317 | 0.81562 | 8.42E-52 | -1.69E-46 |
| MS.gene050227 | MS.gene53317 | 0.807606 | 4.66E-50 | -1.69E-46 |
| MS.gene050228 | MS.gene53317 | 0.80342 | 3.52E-49 | -1.69E-46 |
| MS.gene050762 | MS.gene53317 | 0.843482 | 1.36E-58 | -1.69E-46 |
| MS.gene050763 | MS.gene53317 | 0.847901 | 8.62E-60 | -1.69E-46 |
| MS.gene051860 | MS.gene53317 | 0.805846 | 1.10E-49 | -1.69E-46 |
| MS.gene052077 | MS.gene53317 | 0.804829 | 1.79E-49 | -1.69E-46 |
| MS.gene053074 | MS.gene53317 | 0.82228 | 2.58E-53 | -1.69E-46 |
| MS.gene053494 | MS.gene53317 | 0.806902 | 6.57E-50 | -1.69E-46 |
| MS.gene053836 | MS.gene53317 | 0.808707 | 2.71E-50 | -1.69E-46 |
| MS.gene054184 | MS.gene53317 | 0.820269 | 7.50E-53 | -1.69E-46 |
| MS.gene054185 | MS.gene53317 | 0.826751 | 2.28E-54 | -1.69E-46 |
| MS.gene054379 | MS.gene53317 | 0.845524 | 3.85E-59 | -1.69E-46 |
| MS.gene057754 | MS.gene53317 | 0.821291 | 4.36E-53 | -1.69E-46 |
| MS.gene057929 | MS.gene53317 | 0.827003 | 1.99E-54 | -1.69E-46 |
| MS.gene059124 | MS.gene53317 | 0.832523 | 9.01E-56 | -1.69E-46 |
| MS.gene05984 | MS.gene53317 | 0.80199 | 6.94E-49 | -1.69E-46 |
| MS.gene060084 | MS.gene53317 | 0.801962 | 7.03E-49 | -1.69E-46 |
| MS.gene061049 | MS.gene53317 | 0.804936 | 1.70E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 81 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTTCAACTTTGTAGAAAA+TGG | 0.161738 | 8.4:+73374658 | None:intergenic |
| ATGTCCGTGCCATTGGAATT+TGG | 0.183736 | 8.4:-73373938 | MS.gene53317:CDS |
| GAGCTTTATTCTACTCTATT+AGG | 0.209374 | 8.4:-73373780 | MS.gene53317:CDS |
| ACATGGAATGATTTATTTAA+AGG | 0.243336 | 8.4:-73373805 | MS.gene53317:CDS |
| AAGGAATCGGGTAACATCTT+TGG | 0.258472 | 8.4:-73374536 | MS.gene53317:CDS |
| CAAGATGAAGAAGCATAATT+TGG | 0.265986 | 8.4:+73374743 | None:intergenic |
| CGATGTGTTTATCAGCTTTA+GGG | 0.269709 | 8.4:-73374927 | MS.gene53317:CDS |
| ACGATGTGTTTATCAGCTTT+AGG | 0.270666 | 8.4:-73374928 | MS.gene53317:CDS |
| CCCTTAGTTCTTAAAGAATT+AGG | 0.281653 | 8.4:-73373408 | MS.gene53317:CDS |
| TGTCCGTGCCATTGGAATTT+GGG | 0.294892 | 8.4:-73373937 | MS.gene53317:CDS |
| AAAGAATTAGGTCATCTTCT+TGG | 0.301662 | 8.4:-73373396 | MS.gene53317:CDS |
| ACATGTGGAATCATTGTTAC+AGG | 0.308843 | 8.4:-73373973 | MS.gene53317:CDS |
| AGTTAAAATTGTTGAGCTTC+GGG | 0.322393 | 8.4:-73374705 | MS.gene53317:CDS |
| CCTGATTCTTCTCTTACATT+AGG | 0.330765 | 8.4:+73373831 | None:intergenic |
| CCAACTTCTTTGATAATTCA+AGG | 0.341060 | 8.4:+73373451 | None:intergenic |
| ACCTAATTCTTTAAGAACTA+AGG | 0.349049 | 8.4:+73373407 | None:intergenic |
| TGGTGAGAAGAAGATGTTAT+TGG | 0.353202 | 8.4:-73373268 | MS.gene53317:CDS |
| AGGAATCGGGTAACATCTTT+GGG | 0.359133 | 8.4:-73374535 | MS.gene53317:CDS |
| CAAATTATGCTTCTTCATCT+TGG | 0.362306 | 8.4:-73374742 | MS.gene53317:CDS |
| TAGTTAAAATTGTTGAGCTT+CGG | 0.365126 | 8.4:-73374706 | MS.gene53317:CDS |
| TTTCACTCAAAAGGAGTTGT+TGG | 0.369499 | 8.4:-73374014 | MS.gene53317:CDS |
| TTCTGATGTCTCACAGTTGT+GGG | 0.386105 | 8.4:+73374638 | None:intergenic |
| AAGAACTAAGGGAATGCCTT+TGG | 0.393157 | 8.4:+73373419 | None:intergenic |
| ATTGAAACACATGATTGGTT+TGG | 0.394674 | 8.4:-73373633 | MS.gene53317:CDS |
| TTCAGTAATTGATTGTCATT+AGG | 0.398836 | 8.4:+73372988 | None:intergenic |
| AACAAAATTTGAAAATGAAC+AGG | 0.405825 | 8.4:-73373755 | MS.gene53317:CDS |
| ATTTGGGGCATGCCTGGTAT+AGG | 0.411038 | 8.4:-73373921 | MS.gene53317:CDS |
| ACAAACATGGGAAAGGCAAC+TGG | 0.411266 | 8.4:-73373361 | MS.gene53317:CDS |
| TCAAAAGATGTCCGTGCCAT+TGG | 0.421361 | 8.4:-73373945 | MS.gene53317:CDS |
| GAAGACAATATGCTTAAGAA+AGG | 0.422612 | 8.4:-73374833 | MS.gene53317:CDS |
| GGTTCAACTTTGTAGAAAAT+GGG | 0.423475 | 8.4:+73374659 | None:intergenic |
| AGCCTCCTCATAACAAAATC+AGG | 0.425341 | 8.4:+73373720 | None:intergenic |
| ATTCTGATGTCTCACAGTTG+TGG | 0.438227 | 8.4:+73374637 | None:intergenic |
| TAATGATATATACGAGGTTC+AGG | 0.438920 | 8.4:-73373547 | MS.gene53317:CDS |
| GAGATATGCTTTGAAGGAAT+CGG | 0.451340 | 8.4:-73374549 | MS.gene53317:CDS |
| TCATCATAACAACTAGAGAT+AGG | 0.451377 | 8.4:-73373596 | MS.gene53317:CDS |
| ATTGGAATTTGGGGCATGCC+TGG | 0.456481 | 8.4:-73373927 | MS.gene53317:CDS |
| TGGAAAACAAAGTCAATTGT+TGG | 0.457175 | 8.4:-73373013 | MS.gene53317:CDS |
| TTGATTTCGACGGAAAGCTT+CGG | 0.458062 | 8.4:+73374868 | None:intergenic |
| TAGGCAAGTGCTTGCTAAGA+AGG | 0.460610 | 8.4:-73373577 | MS.gene53317:CDS |
| CAACTGTTATTGAAAGATCA+TGG | 0.467757 | 8.4:-73373171 | MS.gene53317:CDS |
| CCTAATGTAAGAGAAGAATC+AGG | 0.474453 | 8.4:-73373831 | MS.gene53317:CDS |
| AAACAACAATTTGATTTCGA+CGG | 0.479666 | 8.4:+73374858 | None:intergenic |
| AATTGTTCAACGTGTGTTGA+GGG | 0.480916 | 8.4:-73374063 | MS.gene53317:CDS |
| TGAACAAAATCATCCTCAAA+TGG | 0.485200 | 8.4:-73373478 | MS.gene53317:CDS |
| CCTAATTCTTTAAGAACTAA+GGG | 0.486817 | 8.4:+73373408 | None:intergenic |
| GAGGAGGCTTCGTTGTATGA+AGG | 0.497172 | 8.4:-73373706 | MS.gene53317:CDS |
| CCTTGAATTATCAAAGAAGT+TGG | 0.497927 | 8.4:-73373451 | MS.gene53317:CDS |
| AACAATTTCTTCAACAAGCA+CGG | 0.502169 | 8.4:+73374079 | None:intergenic |
| TCAACGTGTGTTGAGGGAGT+TGG | 0.502493 | 8.4:-73374057 | MS.gene53317:CDS |
| AATTCAAGGTACTCCATTTG+AGG | 0.504039 | 8.4:+73373465 | None:intergenic |
| GAATTAGGTCATCTTCTTGG+TGG | 0.508420 | 8.4:-73373393 | MS.gene53317:CDS |
| GTCCGTGCCATTGGAATTTG+GGG | 0.508466 | 8.4:-73373936 | MS.gene53317:CDS |
| AGATATGCTTTGAAGGAATC+GGG | 0.517917 | 8.4:-73374548 | MS.gene53317:CDS |
| ATTTGAGTAGGGTGCGGCAG+TGG | 0.526153 | 8.4:-73374571 | MS.gene53317:CDS |
| ACACATGATTGGTTTGGAAG+AGG | 0.534458 | 8.4:-73373627 | MS.gene53317:CDS |
| AATATGCTTAAGAAAGGAGA+TGG | 0.536218 | 8.4:-73374827 | MS.gene53317:CDS |
| GCAGTGGAGATATGCTTTGA+AGG | 0.544659 | 8.4:-73374555 | MS.gene53317:CDS |
| AAATTGTTCAACGTGTGTTG+AGG | 0.551638 | 8.4:-73374064 | MS.gene53317:CDS |
| TACTTGTATGATATTGTGCA+TGG | 0.567920 | 8.4:+73373071 | None:intergenic |
| AAGATAAACAAACATGGGAA+AGG | 0.571330 | 8.4:-73373368 | MS.gene53317:CDS |
| TATCATACAAGTAACAGCTC+GGG | 0.571388 | 8.4:-73373061 | MS.gene53317:CDS |
| GATGTGTTTATCAGCTTTAG+GGG | 0.574357 | 8.4:-73374926 | MS.gene53317:CDS |
| TGCCCCAAATTCCAATGGCA+CGG | 0.583296 | 8.4:+73373934 | None:intergenic |
| AGAGAAGAATCAGGAAGACA+TGG | 0.588902 | 8.4:-73373822 | MS.gene53317:CDS |
| AAGCTTCGGTTAAGTGACTC+AGG | 0.592621 | 8.4:+73374882 | None:intergenic |
| ATATCATACAAGTAACAGCT+CGG | 0.599811 | 8.4:-73373062 | MS.gene53317:CDS |
| TGACGAACAAATTCGACATG+TGG | 0.602802 | 8.4:-73373988 | MS.gene53317:CDS |
| GTGTGTTGAGGGAGTTGGAT+GGG | 0.603891 | 8.4:-73374052 | MS.gene53317:CDS |
| CATGGGAAAGGCAACTGGAG+AGG | 0.618441 | 8.4:-73373356 | MS.gene53317:CDS |
| TATCGTGAAGAATCCATCCA+TGG | 0.620856 | 8.4:-73373033 | MS.gene53317:CDS |
| AAGTTGGTCAATTATGCCAA+AGG | 0.620929 | 8.4:-73373435 | MS.gene53317:CDS |
| TGGAAAAGATAAACAAACAT+GGG | 0.622761 | 8.4:-73373373 | MS.gene53317:CDS |
| GTGGAAAAGATAAACAAACA+TGG | 0.626174 | 8.4:-73373374 | MS.gene53317:CDS |
| ACTACGATTTGAGTAGGGTG+CGG | 0.637865 | 8.4:-73374577 | MS.gene53317:CDS |
| CGTGTGTTGAGGGAGTTGGA+TGG | 0.639512 | 8.4:-73374053 | MS.gene53317:CDS |
| ACAACTGTGAGACATCAGAA+TGG | 0.641831 | 8.4:-73374635 | MS.gene53317:CDS |
| AGGCATGCCCCAAATTCCAA+TGG | 0.644173 | 8.4:+73373929 | None:intergenic |
| TCAATTACTGAAACATGCCA+AGG | 0.654591 | 8.4:-73372977 | None:intergenic |
| AGGGGAATCGACACTCGCAG+AGG | 0.662180 | 8.4:-73374908 | MS.gene53317:CDS |
| TGTTGATAATGATATATACG+AGG | 0.729479 | 8.4:-73373553 | MS.gene53317:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAAGCTATTACAAATTAAA+CGG | - | chr8.4:73373716-73373735 | MS.gene53317:CDS | 15.0% |
| !! | AAACGGTTAAAATTAGTATT+AGG | - | chr8.4:73373733-73373752 | MS.gene53317:CDS | 20.0% |
| !! | AACAAAATTTGAAAATGAAC+AGG | - | chr8.4:73374211-73374230 | MS.gene53317:intron | 20.0% |
| !! | ACATGGAATGATTTATTTAA+AGG | - | chr8.4:73374161-73374180 | MS.gene53317:intron | 20.0% |
| !! | TAAAAACAGATAAAAGATTG+TGG | - | chr8.4:73373626-73373645 | MS.gene53317:CDS | 20.0% |
| !!! | TTTTAATTGAAACACATGAT+TGG | - | chr8.4:73374328-73374347 | MS.gene53317:intron | 20.0% |
| ! | AAAAAAACTACGATTTGAGT+AGG | - | chr8.4:73373383-73373402 | MS.gene53317:CDS | 25.0% |
| ! | AAAAAACTACGATTTGAGTA+GGG | - | chr8.4:73373384-73373403 | MS.gene53317:CDS | 25.0% |
| ! | AAATTAGGATATGTGTGAAT+TGG | - | chr8.4:73373579-73373598 | MS.gene53317:CDS | 25.0% |
| ! | AATTAGGATATGTGTGAATT+GGG | - | chr8.4:73373580-73373599 | MS.gene53317:CDS | 25.0% |
| ! | ATGCAAAAATTTCACTCAAA+AGG | - | chr8.4:73373943-73373962 | MS.gene53317:CDS | 25.0% |
| ! | GAAAGAAAAGTTAAAACACA+TGG | + | chr8.4:73373851-73373870 | None:intergenic | 25.0% |
| ! | TAAAACTACTATCACAAATG+TGG | - | chr8.4:73373679-73373698 | MS.gene53317:CDS | 25.0% |
| ! | TAGTTAAAATTGTTGAGCTT+CGG | - | chr8.4:73373260-73373279 | MS.gene53317:CDS | 25.0% |
| ! | TGAAAAATAAAGGTCTTCTA+AGG | - | chr8.4:73374850-73374869 | MS.gene53317:CDS | 25.0% |
| ! | TGGAAAAGATAAACAAACAT+GGG | - | chr8.4:73374593-73374612 | MS.gene53317:CDS | 25.0% |
| ! | TTAGAAAGCCTGAAAAATAA+AGG | - | chr8.4:73374840-73374859 | MS.gene53317:CDS | 25.0% |
| ! | TTCAGTAATTGATTGTCATT+AGG | + | chr8.4:73374981-73375000 | None:intergenic | 25.0% |
| ! | TTTGCATTGTGATTCAAATT+AGG | - | chr8.4:73373564-73373583 | MS.gene53317:CDS | 25.0% |
| !! | AAACAACAATTTGATTTCGA+CGG | + | chr8.4:73373111-73373130 | None:intergenic | 25.0% |
| !! | ACCTAATTCTTTAAGAACTA+AGG | + | chr8.4:73374562-73374581 | None:intergenic | 25.0% |
| !! | CCTAATTCTTTAAGAACTAA+GGG | + | chr8.4:73374561-73374580 | None:intergenic | 25.0% |
| !!! | ATTTTCCTGATTTTGTTATG+AGG | - | chr8.4:73374241-73374260 | MS.gene53317:intron | 25.0% |
| !!! | GCATCATAAACTTTTTTCAT+TGG | + | chr8.4:73374648-73374667 | None:intergenic | 25.0% |
| !!! | TAGAATTTGATGACTCTTTT+AGG | - | chr8.4:73374445-73374464 | MS.gene53317:intron | 25.0% |
| !!! | TGTTGATAATGATATATACG+AGG | - | chr8.4:73374413-73374432 | MS.gene53317:intron | 25.0% |
| !!! | TTAGAAGACCTTTATTTTTC+AGG | + | chr8.4:73374851-73374870 | None:intergenic | 25.0% |
| AAACTAGGGTTAATAGACAA+TGG | - | chr8.4:73373767-73373786 | MS.gene53317:CDS | 30.0% | |
| AAAGAATTAGGTCATCTTCT+TGG | - | chr8.4:73374570-73374589 | MS.gene53317:CDS | 30.0% | |
| AACAATTTCTTCAACAAGCA+CGG | + | chr8.4:73373890-73373909 | None:intergenic | 30.0% | |
| AACTAGGGTTAATAGACAAT+GGG | - | chr8.4:73373768-73373787 | MS.gene53317:CDS | 30.0% | |
| AAGATAAACAAACATGGGAA+AGG | - | chr8.4:73374598-73374617 | MS.gene53317:CDS | 30.0% | |
| AATATGCTTAAGAAAGGAGA+TGG | - | chr8.4:73373139-73373158 | MS.gene53317:CDS | 30.0% | |
| AGTTAAAATTGTTGAGCTTC+GGG | - | chr8.4:73373261-73373280 | MS.gene53317:CDS | 30.0% | |
| ATATCATACAAGTAACAGCT+CGG | - | chr8.4:73374904-73374923 | MS.gene53317:CDS | 30.0% | |
| ATTAGGATATGTGTGAATTG+GGG | - | chr8.4:73373581-73373600 | MS.gene53317:CDS | 30.0% | |
| CAAATTATGCTTCTTCATCT+TGG | - | chr8.4:73373224-73373243 | MS.gene53317:CDS | 30.0% | |
| CAACTGTTATTGAAAGATCA+TGG | - | chr8.4:73374795-73374814 | MS.gene53317:CDS | 30.0% | |
| CCTTGAATTATCAAAGAAGT+TGG | - | chr8.4:73374515-73374534 | MS.gene53317:CDS | 30.0% | |
| GAAGACAATATGCTTAAGAA+AGG | - | chr8.4:73373133-73373152 | MS.gene53317:CDS | 30.0% | |
| GGTTCAACTTTGTAGAAAAT+GGG | + | chr8.4:73373310-73373329 | None:intergenic | 30.0% | |
| GTGGAAAAGATAAACAAACA+TGG | - | chr8.4:73374592-73374611 | MS.gene53317:CDS | 30.0% | |
| TAATGATATATACGAGGTTC+AGG | - | chr8.4:73374419-73374438 | MS.gene53317:intron | 30.0% | |
| TACTTGTATGATATTGTGCA+TGG | + | chr8.4:73374898-73374917 | None:intergenic | 30.0% | |
| TCATCATAACAACTAGAGAT+AGG | - | chr8.4:73374370-73374389 | MS.gene53317:intron | 30.0% | |
| TGAACAAAATCATCCTCAAA+TGG | - | chr8.4:73374488-73374507 | MS.gene53317:intron | 30.0% | |
| TGGAAAACAAAGTCAATTGT+TGG | - | chr8.4:73374953-73374972 | MS.gene53317:CDS | 30.0% | |
| TTTACCAAAGAGGATTGAAT+TGG | + | chr8.4:73373663-73373682 | None:intergenic | 30.0% | |
| ! | AACTTTTCTTTCTTCCATAG+TGG | - | chr8.4:73373859-73373878 | MS.gene53317:CDS | 30.0% |
| ! | ATTGAAACACATGATTGGTT+TGG | - | chr8.4:73374333-73374352 | MS.gene53317:intron | 30.0% |
| ! | CAAGATGAAGAAGCATAATT+TGG | + | chr8.4:73373226-73373245 | None:intergenic | 30.0% |
| ! | CCAACTTCTTTGATAATTCA+AGG | + | chr8.4:73374518-73374537 | None:intergenic | 30.0% |
| ! | CCCTTAGTTCTTAAAGAATT+AGG | - | chr8.4:73374558-73374577 | MS.gene53317:CDS | 30.0% |
| ! | TTGAGGATGATTTTGTTCAA+AGG | + | chr8.4:73374487-73374506 | None:intergenic | 30.0% |
| !! | ATAGTTGTTTTACCTATACC+AGG | + | chr8.4:73374060-73374079 | None:intergenic | 30.0% |
| !! | GAGCTTTATTCTACTCTATT+AGG | - | chr8.4:73374186-73374205 | MS.gene53317:intron | 30.0% |
| !! | GTCTATTAACCCTAGTTTTT+GGG | + | chr8.4:73373765-73373784 | None:intergenic | 30.0% |
| !! | GTTATTGCATGTTTTTCAGA+TGG | - | chr8.4:73374720-73374739 | MS.gene53317:CDS | 30.0% |
| !! | TGATAGTAGTTTTACCAAAG+AGG | + | chr8.4:73373673-73373692 | None:intergenic | 30.0% |
| !! | TGTCTATTAACCCTAGTTTT+TGG | + | chr8.4:73373766-73373785 | None:intergenic | 30.0% |
| !!! | ACAATTGACTTTGTTTTCCA+TGG | + | chr8.4:73374953-73374972 | None:intergenic | 30.0% |
| AAATTGTTCAACGTGTGTTG+AGG | - | chr8.4:73373902-73373921 | MS.gene53317:CDS | 35.0% | |
| AATTGTTCAACGTGTGTTGA+GGG | - | chr8.4:73373903-73373922 | MS.gene53317:CDS | 35.0% | |
| ACATGTGGAATCATTGTTAC+AGG | - | chr8.4:73373993-73374012 | MS.gene53317:CDS | 35.0% | |
| ACGATGTGTTTATCAGCTTT+AGG | - | chr8.4:73373038-73373057 | MS.gene53317:CDS | 35.0% | |
| ATGTCCAATTCAATCCTCTT+TGG | - | chr8.4:73373656-73373675 | MS.gene53317:CDS | 35.0% | |
| CCTAATGTAAGAGAAGAATC+AGG | - | chr8.4:73374135-73374154 | MS.gene53317:intron | 35.0% | |
| CCTGATTCTTCTCTTACATT+AGG | + | chr8.4:73374138-73374157 | None:intergenic | 35.0% | |
| CGATGTGTTTATCAGCTTTA+GGG | - | chr8.4:73373039-73373058 | MS.gene53317:CDS | 35.0% | |
| GGGTTCAACTTTGTAGAAAA+TGG | + | chr8.4:73373311-73373330 | None:intergenic | 35.0% | |
| TATCATACAAGTAACAGCTC+GGG | - | chr8.4:73374905-73374924 | MS.gene53317:CDS | 35.0% | |
| TGGTGAGAAGAAGATGTTAT+TGG | - | chr8.4:73374698-73374717 | MS.gene53317:CDS | 35.0% | |
| TTAGGATATGTGTGAATTGG+GGG | - | chr8.4:73373582-73373601 | MS.gene53317:CDS | 35.0% | |
| TTTCACTCAAAAGGAGTTGT+TGG | - | chr8.4:73373952-73373971 | MS.gene53317:CDS | 35.0% | |
| ! | AAGTTGGTCAATTATGCCAA+AGG | - | chr8.4:73374531-73374550 | MS.gene53317:CDS | 35.0% |
| ! | AATTCAAGGTACTCCATTTG+AGG | + | chr8.4:73374504-73374523 | None:intergenic | 35.0% |
| ! | CAATGCAAACTTTTACAGCA+AGG | + | chr8.4:73373553-73373572 | None:intergenic | 35.0% |
| ! | GATGTGTTTATCAGCTTTAG+GGG | - | chr8.4:73373040-73373059 | MS.gene53317:CDS | 35.0% |
| ! | TTATGAGTCTGTTGATGAGA+AGG | - | chr8.4:73373503-73373522 | MS.gene53317:CDS | 35.0% |
| !! | AGATATGCTTTGAAGGAATC+GGG | - | chr8.4:73373418-73373437 | MS.gene53317:CDS | 35.0% |
| !! | AGTTTTGATGATCTTGATCG+TGG | - | chr8.4:73374678-73374697 | MS.gene53317:CDS | 35.0% |
| !! | GAGATATGCTTTGAAGGAAT+CGG | - | chr8.4:73373417-73373436 | MS.gene53317:CDS | 35.0% |
| !! | TTCCTGATTTTGTTATGAGG+AGG | - | chr8.4:73374244-73374263 | MS.gene53317:intron | 35.0% |
| !!! | TTGACTTTGTTTTCCATGGA+TGG | + | chr8.4:73374949-73374968 | None:intergenic | 35.0% |
| AAGAACTAAGGGAATGCCTT+TGG | + | chr8.4:73374550-73374569 | None:intergenic | 40.0% | |
| AAGGAATCGGGTAACATCTT+TGG | - | chr8.4:73373430-73373449 | MS.gene53317:CDS | 40.0% | |
| ACAACTGTGAGACATCAGAA+TGG | - | chr8.4:73373331-73373350 | MS.gene53317:CDS | 40.0% | |
| AGAGAAGAATCAGGAAGACA+TGG | - | chr8.4:73374144-73374163 | MS.gene53317:intron | 40.0% | |
| AGCCTCCTCATAACAAAATC+AGG | + | chr8.4:73374249-73374268 | None:intergenic | 40.0% | |
| AGGAATCGGGTAACATCTTT+GGG | - | chr8.4:73373431-73373450 | MS.gene53317:CDS | 40.0% | |
| ATTCTGATGTCTCACAGTTG+TGG | + | chr8.4:73373332-73373351 | None:intergenic | 40.0% | |
| GAATTAGGTCATCTTCTTGG+TGG | - | chr8.4:73374573-73374592 | MS.gene53317:CDS | 40.0% | |
| TATCGTGAAGAATCCATCCA+TGG | - | chr8.4:73374933-73374952 | MS.gene53317:CDS | 40.0% | |
| TGACGAACAAATTCGACATG+TGG | - | chr8.4:73373978-73373997 | MS.gene53317:CDS | 40.0% | |
| TTCTGATGTCTCACAGTTGT+GGG | + | chr8.4:73373331-73373350 | None:intergenic | 40.0% | |
| TTGATTTCGACGGAAAGCTT+CGG | + | chr8.4:73373101-73373120 | None:intergenic | 40.0% | |
| ! | AGTCTGTTGATGAGAAGGAT+AGG | - | chr8.4:73373508-73373527 | MS.gene53317:CDS | 40.0% |
| !! | ACACATGATTGGTTTGGAAG+AGG | - | chr8.4:73374339-73374358 | MS.gene53317:intron | 40.0% |
| !!! | TAACCCTAGTTTTTGGGACT+CGG | + | chr8.4:73373759-73373778 | None:intergenic | 40.0% |
| AAGCTTCGGTTAAGTGACTC+AGG | + | chr8.4:73373087-73373106 | None:intergenic | 45.0% | |
| ACAAACATGGGAAAGGCAAC+TGG | - | chr8.4:73374605-73374624 | MS.gene53317:CDS | 45.0% | |
| ACTACGATTTGAGTAGGGTG+CGG | - | chr8.4:73373389-73373408 | MS.gene53317:CDS | 45.0% | |
| ATGAGAAGGATAGGAGTGAG+AGG | - | chr8.4:73373517-73373536 | MS.gene53317:CDS | 45.0% | |
| GCAGTGGAGATATGCTTTGA+AGG | - | chr8.4:73373411-73373430 | MS.gene53317:CDS | 45.0% | |
| GGATAGGAGTGAGAGGAAAT+AGG | - | chr8.4:73373524-73373543 | MS.gene53317:CDS | 45.0% | |
| TCAAAAGATGTCCGTGCCAT+TGG | - | chr8.4:73374021-73374040 | MS.gene53317:CDS | 45.0% | |
| TGTGAATTGGGGGTAGTAAG+AGG | - | chr8.4:73373592-73373611 | MS.gene53317:CDS | 45.0% | |
| ! | ATGTCCGTGCCATTGGAATT+TGG | - | chr8.4:73374028-73374047 | MS.gene53317:CDS | 45.0% |
| ! | TAGGCAAGTGCTTGCTAAGA+AGG | - | chr8.4:73374389-73374408 | MS.gene53317:intron | 45.0% |
| ! | TGTCCGTGCCATTGGAATTT+GGG | - | chr8.4:73374029-73374048 | MS.gene53317:CDS | 45.0% |
| AGGCATGCCCCAAATTCCAA+TGG | + | chr8.4:73374040-73374059 | None:intergenic | 50.0% | |
| AGGCCGAGTCCCAAAAACTA+GGG | - | chr8.4:73373753-73373772 | MS.gene53317:CDS | 50.0% | |
| GAGGAGGCTTCGTTGTATGA+AGG | - | chr8.4:73374260-73374279 | MS.gene53317:intron | 50.0% | |
| GTGTGTTGAGGGAGTTGGAT+GGG | - | chr8.4:73373914-73373933 | MS.gene53317:CDS | 50.0% | |
| TAGGCCGAGTCCCAAAAACT+AGG | - | chr8.4:73373752-73373771 | MS.gene53317:CDS | 50.0% | |
| TCAACGTGTGTTGAGGGAGT+TGG | - | chr8.4:73373909-73373928 | MS.gene53317:CDS | 50.0% | |
| TGCCCCAAATTCCAATGGCA+CGG | + | chr8.4:73374035-73374054 | None:intergenic | 50.0% | |
| ! | ATTGGAATTTGGGGCATGCC+TGG | - | chr8.4:73374039-73374058 | MS.gene53317:CDS | 50.0% |
| ! | ATTTGGGGCATGCCTGGTAT+AGG | - | chr8.4:73374045-73374064 | MS.gene53317:CDS | 50.0% |
| ! | GTCCGTGCCATTGGAATTTG+GGG | - | chr8.4:73374030-73374049 | MS.gene53317:CDS | 50.0% |
| ATTTGAGTAGGGTGCGGCAG+TGG | - | chr8.4:73373395-73373414 | MS.gene53317:CDS | 55.0% | |
| CAAGCACGGCTTCACCACTA+TGG | + | chr8.4:73373876-73373895 | None:intergenic | 55.0% | |
| CATGGGAAAGGCAACTGGAG+AGG | - | chr8.4:73374610-73374629 | MS.gene53317:CDS | 55.0% | |
| CGTGTGTTGAGGGAGTTGGA+TGG | - | chr8.4:73373913-73373932 | MS.gene53317:CDS | 55.0% | |
| AGGGGAATCGACACTCGCAG+AGG | - | chr8.4:73373058-73373077 | MS.gene53317:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 73372978 | 73375010 | 73372978 | ID=MS.gene53317 |
| chr8.4 | mRNA | 73372978 | 73375010 | 73372978 | ID=MS.gene53317.t1;Parent=MS.gene53317 |
| chr8.4 | exon | 73374509 | 73375010 | 73374509 | ID=MS.gene53317.t1.exon1;Parent=MS.gene53317.t1 |
| chr8.4 | CDS | 73374509 | 73375010 | 73374509 | ID=cds.MS.gene53317.t1;Parent=MS.gene53317.t1 |
| chr8.4 | exon | 73372978 | 73374109 | 73372978 | ID=MS.gene53317.t1.exon2;Parent=MS.gene53317.t1 |
| chr8.4 | CDS | 73372978 | 73374109 | 73372978 | ID=cds.MS.gene53317.t1;Parent=MS.gene53317.t1 |
| Gene Sequence |
| Protein sequence |
