Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53701.t1 | XP_013467241.1 | 94.4 | 301 | 17 | 0 | 1 | 301 | 1 | 301 | 7.80E-154 | 553.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53701.t1 | Q9FFB6 | 69.9 | 256 | 77 | 0 | 45 | 300 | 16 | 271 | 9.8e-97 | 354.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53701.t1 | G7ZXV0 | 94.4 | 301 | 17 | 0 | 1 | 301 | 1 | 301 | 5.6e-154 | 553.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052290 | MS.gene53701 | -0.812314 | 4.51E-51 | -1.69E-46 |
| MS.gene059708 | MS.gene53701 | -0.813417 | 2.59E-51 | -1.69E-46 |
| MS.gene059711 | MS.gene53701 | -0.800474 | 1.42E-48 | -1.69E-46 |
| MS.gene060005 | MS.gene53701 | -0.823646 | 1.24E-53 | -1.69E-46 |
| MS.gene061051 | MS.gene53701 | 0.801604 | 8.33E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene96207 | MS.gene53701 | PPI |
| MS.gene53701 | MS.gene049765 | PPI |
| MS.gene53701 | MS.gene00991 | PPI |
| MS.gene53701 | MS.gene09127 | PPI |
| MS.gene53701 | MS.gene002763 | PPI |
| MS.gene53701 | MS.gene007740 | PPI |
| MS.gene53701 | MS.gene03701 | PPI |
| MS.gene53701 | MS.gene004457 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53701.t1 | MTR_1g047740 | 94.352 | 301 | 17 | 0 | 1 | 301 | 1 | 301 | 0.0 | 596 |
| MS.gene53701.t1 | MTR_3g108240 | 73.786 | 309 | 73 | 2 | 1 | 301 | 1 | 309 | 7.27e-171 | 476 |
| MS.gene53701.t1 | MTR_3g108240 | 73.139 | 309 | 73 | 3 | 1 | 301 | 1 | 307 | 3.48e-167 | 466 |
| MS.gene53701.t1 | MTR_7g102990 | 70.238 | 252 | 75 | 0 | 50 | 301 | 18 | 269 | 1.79e-140 | 398 |
| MS.gene53701.t1 | MTR_1g010150 | 83.415 | 205 | 34 | 0 | 97 | 301 | 1 | 205 | 2.28e-131 | 372 |
| MS.gene53701.t1 | MTR_4g057310 | 65.152 | 264 | 87 | 1 | 37 | 300 | 4 | 262 | 2.88e-130 | 372 |
| MS.gene53701.t1 | MTR_2g020040 | 58.000 | 250 | 104 | 1 | 48 | 297 | 10 | 258 | 2.42e-106 | 310 |
| MS.gene53701.t1 | MTR_4g057310 | 63.801 | 221 | 73 | 2 | 29 | 249 | 1 | 214 | 2.25e-103 | 301 |
| MS.gene53701.t1 | MTR_7g102990 | 69.492 | 177 | 54 | 0 | 50 | 226 | 18 | 194 | 1.02e-93 | 276 |
| MS.gene53701.t1 | MTR_8g104410 | 37.184 | 277 | 152 | 7 | 33 | 300 | 736 | 999 | 7.85e-57 | 197 |
| MS.gene53701.t1 | MTR_8g104410 | 37.184 | 277 | 152 | 7 | 33 | 300 | 972 | 1235 | 1.20e-56 | 197 |
| MS.gene53701.t1 | MTR_6g083900 | 38.163 | 283 | 152 | 7 | 30 | 301 | 956 | 1226 | 3.35e-54 | 190 |
| MS.gene53701.t1 | MTR_4g107440 | 38.554 | 249 | 135 | 7 | 54 | 297 | 1034 | 1269 | 2.68e-50 | 179 |
| MS.gene53701.t1 | MTR_1g010170 | 55.769 | 52 | 18 | 1 | 1 | 47 | 1 | 52 | 5.57e-11 | 58.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene53701.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 8.35e-145 | 410 |
| MS.gene53701.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 8.35e-145 | 410 |
| MS.gene53701.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 8.35e-145 | 410 |
| MS.gene53701.t1 | AT5G25560 | 66.552 | 290 | 90 | 2 | 14 | 301 | 24 | 308 | 8.35e-145 | 410 |
| MS.gene53701.t1 | AT5G25560 | 64.333 | 300 | 90 | 3 | 14 | 301 | 24 | 318 | 8.89e-142 | 402 |
| MS.gene53701.t1 | AT5G25560 | 65.172 | 290 | 89 | 3 | 14 | 301 | 24 | 303 | 3.73e-139 | 395 |
| MS.gene53701.t1 | AT5G22920 | 66.797 | 256 | 85 | 0 | 45 | 300 | 16 | 271 | 3.90e-134 | 382 |
| MS.gene53701.t1 | AT5G22920 | 66.667 | 222 | 74 | 0 | 45 | 266 | 16 | 237 | 1.15e-114 | 330 |
| MS.gene53701.t1 | AT5G18650 | 56.693 | 254 | 109 | 1 | 44 | 297 | 6 | 258 | 3.68e-105 | 308 |
| MS.gene53701.t1 | AT3G62970 | 52.416 | 269 | 125 | 3 | 30 | 298 | 10 | 275 | 2.24e-101 | 298 |
| MS.gene53701.t1 | AT3G62970 | 53.219 | 233 | 107 | 2 | 30 | 262 | 10 | 240 | 1.13e-90 | 270 |
| MS.gene53701.t1 | AT3G62970 | 52.915 | 223 | 103 | 2 | 30 | 252 | 10 | 230 | 1.71e-85 | 256 |
| MS.gene53701.t1 | AT1G74770 | 38.514 | 296 | 156 | 8 | 7 | 297 | 983 | 1257 | 2.15e-59 | 205 |
| MS.gene53701.t1 | AT3G18290 | 41.107 | 253 | 131 | 6 | 54 | 301 | 1004 | 1243 | 3.24e-57 | 199 |
| MS.gene53701.t1 | AT1G18910 | 40.364 | 275 | 140 | 8 | 27 | 297 | 998 | 1252 | 2.28e-56 | 196 |
| MS.gene53701.t1 | AT1G74770 | 37.500 | 240 | 124 | 8 | 7 | 241 | 983 | 1201 | 1.82e-42 | 156 |
Find 64 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GATAAAGGATACATGGAATA+TGG | 0.235762 | 1.3:-29542100 | MS.gene53701:CDS |
| ACACCACAGTTAATACAATT+TGG | 0.247115 | 1.3:+29540946 | None:intergenic |
| TCTCGTCTGTCGTGTGTTAT+AGG | 0.247468 | 1.3:+29539025 | None:intergenic |
| AAGGATTCCAGATTTGATTT+TGG | 0.266935 | 1.3:+29542169 | None:intergenic |
| TTGGAGGATTAACGTCTTCT+TGG | 0.305325 | 1.3:+29542188 | None:intergenic |
| CTGTGATATGTCAAGGGTTT+GGG | 0.325412 | 1.3:-29539553 | MS.gene53701:CDS |
| ACCGGAGAAGATGCCGAATC+AGG | 0.341031 | 1.3:-29541982 | MS.gene53701:CDS |
| ACAAATGATTTGCAAGATAA+AGG | 0.341490 | 1.3:-29542115 | MS.gene53701:CDS |
| TGAGCAATACCAAAATAAAA+TGG | 0.342214 | 1.3:-29539493 | MS.gene53701:intron |
| TATTAACTGTGGTGTTTGTA+TGG | 0.349579 | 1.3:-29540938 | MS.gene53701:CDS |
| CACCTGTTTGACTTGGTGTC+GGG | 0.359703 | 1.3:+29541694 | None:intergenic |
| GTCAAGGGTTTGGGAGAGAT+TGG | 0.368404 | 1.3:-29539544 | MS.gene53701:CDS |
| TAATCCTCCAAAATCAAATC+TGG | 0.375712 | 1.3:-29542176 | MS.gene53701:CDS |
| TGGAGGATTAACGTCTTCTT+GGG | 0.398592 | 1.3:+29542189 | None:intergenic |
| TCTGTGATATGTCAAGGGTT+TGG | 0.400427 | 1.3:-29539554 | MS.gene53701:CDS |
| TTGTTGCTTCTCAACTCTGC+TGG | 0.435891 | 1.3:-29540137 | MS.gene53701:CDS |
| TGATTGCCCCGTGTGTTTCG+AGG | 0.440556 | 1.3:-29540077 | MS.gene53701:intron |
| TCAAATCTGGAATCCTTGCC+TGG | 0.447006 | 1.3:-29542163 | MS.gene53701:CDS |
| CCCTGATTCGGCATCTTCTC+CGG | 0.448395 | 1.3:+29541981 | None:intergenic |
| GATTCCCTTGATGCTTCTCC+AGG | 0.449577 | 1.3:+29542145 | None:intergenic |
| GCCCCGACACCAAGTCAAAC+AGG | 0.459750 | 1.3:-29541696 | MS.gene53701:intron |
| TGCAACAAGGAGCCCTGATT+CGG | 0.470133 | 1.3:+29541969 | None:intergenic |
| CCTTGATGCTTCTCCAGGCA+AGG | 0.472598 | 1.3:+29542150 | None:intergenic |
| ATAAAGGATACATGGAATAT+GGG | 0.477054 | 1.3:-29542099 | MS.gene53701:intron |
| GCGGAAACACCGGTCATGTT+CGG | 0.481081 | 1.3:-29539085 | MS.gene53701:CDS |
| GTAATGGCTGTGGAATTTGC+AGG | 0.495528 | 1.3:-29540694 | MS.gene53701:intron |
| CAGAACGACTTCGAACATAG+AGG | 0.501864 | 1.3:+29539573 | None:intergenic |
| TTTGCAGATGCCAACACTAC+CGG | 0.517868 | 1.3:-29542000 | MS.gene53701:intron |
| GGCATCTTCTCCGGTAGTGT+TGG | 0.528892 | 1.3:+29541990 | None:intergenic |
| CCGGAGAAGATGCCGAATCA+GGG | 0.533742 | 1.3:-29541981 | MS.gene53701:CDS |
| AAGCAGCAGTACCATTGTAA+TGG | 0.540337 | 1.3:-29540710 | MS.gene53701:CDS |
| CAGTACCATTGTAATGGCTG+TGG | 0.543474 | 1.3:-29540704 | MS.gene53701:CDS |
| TGCAATGACTGCGGAAACAC+CGG | 0.544929 | 1.3:-29539095 | MS.gene53701:CDS |
| CCTTGCCTGGAGAAGCATCA+AGG | 0.545939 | 1.3:-29542150 | MS.gene53701:CDS |
| ACCTGTTTGACTTGGTGTCG+GGG | 0.548265 | 1.3:+29541695 | None:intergenic |
| ATTAACTGTGGTGTTTGTAT+GGG | 0.551930 | 1.3:-29540937 | MS.gene53701:CDS |
| AACAGTCACACCTGTGTGGA+AGG | 0.553647 | 1.3:-29540112 | MS.gene53701:CDS |
| AAAATGGAACCGAACATGAC+CGG | 0.555237 | 1.3:+29539076 | None:intergenic |
| ACACCTGTTTGACTTGGTGT+CGG | 0.555973 | 1.3:+29541693 | None:intergenic |
| AGTCGTTCTGTGATATGTCA+AGG | 0.560608 | 1.3:-29539560 | MS.gene53701:CDS |
| CTTGCCTGGAGAAGCATCAA+GGG | 0.565331 | 1.3:-29542149 | MS.gene53701:CDS |
| TGTTTCCGCAGTCATTGCAC+AGG | 0.575987 | 1.3:+29539099 | None:intergenic |
| TTTGCAAGATAAAGGATACA+TGG | 0.576830 | 1.3:-29542107 | MS.gene53701:CDS |
| ACTTTGTGCAACTGAACAAG+AGG | 0.578809 | 1.3:-29541539 | MS.gene53701:intron |
| TGTTATAGGAGTTGCAGTTG+AGG | 0.581082 | 1.3:+29539039 | None:intergenic |
| TTCTTCCATTGTAACAAGTG+TGG | 0.583354 | 1.3:-29540265 | MS.gene53701:intron |
| AAATGTTACCTCGAAACACA+CGG | 0.583489 | 1.3:+29540069 | None:intergenic |
| AATGTTACCTCGAAACACAC+GGG | 0.588310 | 1.3:+29540070 | None:intergenic |
| GTCGTTCTGTGATATGTCAA+GGG | 0.590443 | 1.3:-29539559 | MS.gene53701:CDS |
| GCTTACCACACTTGTTACAA+TGG | 0.603038 | 1.3:+29540260 | None:intergenic |
| ATGAAATGAGAGAACATCAC+CGG | 0.612682 | 1.3:-29539691 | MS.gene53701:intron |
| TTATGGATTGTATGTCCGCA+CGG | 0.613243 | 1.3:+29539725 | None:intergenic |
| AGCTTGTATCATGGGTGATG+TGG | 0.616132 | 1.3:-29542251 | None:intergenic |
| TTGCCGCCATTGTCACAATG+AGG | 0.627282 | 1.3:-29541933 | MS.gene53701:CDS |
| TTGCCTCATTGTGACAATGG+CGG | 0.629473 | 1.3:+29541930 | None:intergenic |
| AGAACGACTTCGAACATAGA+GGG | 0.631596 | 1.3:+29539574 | None:intergenic |
| CAGCCAAATTGTATTAACTG+TGG | 0.635426 | 1.3:-29540949 | MS.gene53701:CDS |
| ATGCATTGCTCCTTCCACAC+AGG | 0.659665 | 1.3:+29540102 | None:intergenic |
| GAAATTGTTGTTATGCCGTG+CGG | 0.662393 | 1.3:-29539740 | MS.gene53701:CDS |
| TATAACACACGACAGACGAG+AGG | 0.688676 | 1.3:-29539023 | MS.gene53701:CDS |
| ATGTTACCTCGAAACACACG+GGG | 0.693054 | 1.3:+29540071 | None:intergenic |
| AAATTCCACAGCCATTACAA+TGG | 0.701862 | 1.3:+29540699 | None:intergenic |
| TGGATCCTGTGCAATGACTG+CGG | 0.725144 | 1.3:-29539104 | MS.gene53701:CDS |
| GGAAAACAGTCACACCTGTG+TGG | 0.726921 | 1.3:-29540116 | MS.gene53701:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAATAGTATATAATCAT+AGG | + | chr1.3:29539885-29539904 | None:intergenic | 10.0% |
| !! | AAATTATTCTATTAGAATTA+AGG | + | chr1.3:29539674-29539693 | None:intergenic | 10.0% |
| !!! | ATAAAGACTAATTTTATAAA+AGG | + | chr1.3:29539241-29539260 | None:intergenic | 10.0% |
| !!! | TGTGATATTTTTAAATTTTT+GGG | - | chr1.3:29539471-29539490 | MS.gene53701:intron | 10.0% |
| !!! | TTGTGATATTTTTAAATTTT+TGG | - | chr1.3:29539470-29539489 | MS.gene53701:intron | 10.0% |
| !! | ATAGTTATGAATATAATTCA+CGG | - | chr1.3:29541294-29541313 | MS.gene53701:intron | 15.0% |
| !! | ATTATATTCATAACTATTAC+AGG | + | chr1.3:29541291-29541310 | None:intergenic | 15.0% |
| !! | TACTGATATTGAATTTATAA+AGG | - | chr1.3:29539790-29539809 | MS.gene53701:intron | 15.0% |
| !!! | ACTGATACAATTATTTTTTA+TGG | + | chr1.3:29541347-29541366 | None:intergenic | 15.0% |
| !!! | GCAAATGATAAATATTTTAT+GGG | + | chr1.3:29540754-29540773 | None:intergenic | 15.0% |
| !!! | GTGATATTTTTAAATTTTTG+GGG | - | chr1.3:29539472-29539491 | MS.gene53701:intron | 15.0% |
| !!! | TGCAAATGATAAATATTTTA+TGG | + | chr1.3:29540755-29540774 | None:intergenic | 15.0% |
| !! | AAAAAAATAAGTAATGAGAC+CGG | + | chr1.3:29539413-29539432 | None:intergenic | 20.0% |
| !! | AAAAACAAAATGAAACAAAG+GGG | + | chr1.3:29540677-29540696 | None:intergenic | 20.0% |
| !! | AAATTACGCTTATGAAAAAT+AGG | + | chr1.3:29539374-29539393 | None:intergenic | 20.0% |
| !! | AACAAATTGCATCATTATTA+GGG | - | chr1.3:29540626-29540645 | MS.gene53701:intron | 20.0% |
| !! | ATAAGAACAATATTCAGAAA+AGG | + | chr1.3:29541634-29541653 | None:intergenic | 20.0% |
| !! | ATATCAAAATCAATCAGTTA+AGG | + | chr1.3:29540945-29540964 | None:intergenic | 20.0% |
| !! | ATTTGTGGATATTTCAATTA+AGG | + | chr1.3:29539613-29539632 | None:intergenic | 20.0% |
| !! | CATGCATAAAGAAAATAAAA+TGG | - | chr1.3:29540032-29540051 | MS.gene53701:intron | 20.0% |
| !! | CTTACATGTATATAATCATA+GGG | + | chr1.3:29540010-29540029 | None:intergenic | 20.0% |
| !! | GAAAAACAAAATGAAACAAA+GGG | + | chr1.3:29540678-29540697 | None:intergenic | 20.0% |
| !! | TAACAAATTGCATCATTATT+AGG | - | chr1.3:29540625-29540644 | MS.gene53701:intron | 20.0% |
| !! | TATTGACATCTTAAATTCAA+GGG | - | chr1.3:29542106-29542125 | MS.gene53701:CDS | 20.0% |
| !! | TGAAAAACAAAATGAAACAA+AGG | + | chr1.3:29540679-29540698 | None:intergenic | 20.0% |
| !! | TGATATTGAATTTATAAAGG+AGG | - | chr1.3:29539793-29539812 | MS.gene53701:intron | 20.0% |
| !! | TTATTGACATCTTAAATTCA+AGG | - | chr1.3:29542105-29542124 | MS.gene53701:CDS | 20.0% |
| !!! | ATGCTAGAGTTATTTTAAAT+TGG | - | chr1.3:29541403-29541422 | MS.gene53701:intron | 20.0% |
| !!! | TAAGTCTGTTTTTATATTTC+TGG | - | chr1.3:29541440-29541459 | MS.gene53701:intron | 20.0% |
| !!! | TGATAAATATTTTATGGGAT+CGG | + | chr1.3:29540749-29540768 | None:intergenic | 20.0% |
| ! | AAAACAAAATGAAACAAAGG+GGG | + | chr1.3:29540676-29540695 | None:intergenic | 25.0% |
| ! | AGATATCTGCATCATATAAA+AGG | + | chr1.3:29540530-29540549 | None:intergenic | 25.0% |
| ! | AGTATAAATAACCAACAGTA+AGG | + | chr1.3:29541809-29541828 | None:intergenic | 25.0% |
| ! | ATAAAGGATACATGGAATAT+GGG | - | chr1.3:29539161-29539180 | MS.gene53701:intron | 25.0% |
| ! | ATTGACATCTTAAATTCAAG+GGG | - | chr1.3:29542107-29542126 | MS.gene53701:CDS | 25.0% |
| ! | CAAATAAATCCCTAAAAACA+GGG | + | chr1.3:29540810-29540829 | None:intergenic | 25.0% |
| ! | GCTTACATGTATATAATCAT+AGG | + | chr1.3:29540011-29540030 | None:intergenic | 25.0% |
| ! | TATGCAACATTAGAACAAAA+AGG | + | chr1.3:29540416-29540435 | None:intergenic | 25.0% |
| ! | TCATTGAGAAAAACAAAGAT+TGG | + | chr1.3:29540187-29540206 | None:intergenic | 25.0% |
| ! | TGAGCAATACCAAAATAAAA+TGG | - | chr1.3:29541767-29541786 | MS.gene53701:intron | 25.0% |
| !! | ACAAATGATTTGCAAGATAA+AGG | - | chr1.3:29539145-29539164 | MS.gene53701:intron | 25.0% |
| !! | ACTAATTTTATAAAAGGAGC+AGG | + | chr1.3:29539235-29539254 | None:intergenic | 25.0% |
| !! | GGTAACATTTACAATTTTCA+TGG | - | chr1.3:29541204-29541223 | MS.gene53701:intron | 25.0% |
| !! | TAATTTTGTGCACTTTATTC+AGG | - | chr1.3:29539688-29539707 | MS.gene53701:intron | 25.0% |
| !! | TTTCATCTATACAGCTTTTA+TGG | + | chr1.3:29541555-29541574 | None:intergenic | 25.0% |
| !!! | ATTTGTTATGTTTCAGACTT+AGG | + | chr1.3:29540613-29540632 | None:intergenic | 25.0% |
| !!! | ATTTTATTTTGGTATTGCTC+AGG | + | chr1.3:29541768-29541787 | None:intergenic | 25.0% |
| !!! | GGTATTTATTTTTGTTCTGT+TGG | - | chr1.3:29541921-29541940 | MS.gene53701:intron | 25.0% |
| !!! | TCTGTTGGTTCATTAATTTT+TGG | - | chr1.3:29541936-29541955 | MS.gene53701:CDS | 25.0% |
| AAAATCAATCAGTTAAGGCA+AGG | + | chr1.3:29540940-29540959 | None:intergenic | 30.0% | |
| AATTGCATCATTATTAGGGA+TGG | - | chr1.3:29540630-29540649 | MS.gene53701:intron | 30.0% | |
| ACACCACAGTTAATACAATT+TGG | + | chr1.3:29540317-29540336 | None:intergenic | 30.0% | |
| ACGCTTATGAAAAATAGGTA+AGG | + | chr1.3:29539369-29539388 | None:intergenic | 30.0% | |
| ATAAAAACACCTGTTTGACT+TGG | + | chr1.3:29539576-29539595 | None:intergenic | 30.0% | |
| ATCCATGAAATAACAGGAAA+AGG | + | chr1.3:29539643-29539662 | None:intergenic | 30.0% | |
| ATGATGTGAGTATTAATCCT+AGG | - | chr1.3:29540381-29540400 | MS.gene53701:intron | 30.0% | |
| ATTAACTGTGGTGTTTGTAT+GGG | - | chr1.3:29540323-29540342 | MS.gene53701:intron | 30.0% | |
| CCAAATAAATCCCTAAAAAC+AGG | + | chr1.3:29540811-29540830 | None:intergenic | 30.0% | |
| CGTTTGACATTCATGATTAT+AGG | - | chr1.3:29541100-29541119 | MS.gene53701:intron | 30.0% | |
| CTATACTTGATATGAATGAC+AGG | + | chr1.3:29541971-29541990 | None:intergenic | 30.0% | |
| CTGCATCATATAAAAGGAAA+CGG | + | chr1.3:29540524-29540543 | None:intergenic | 30.0% | |
| GAACAATATTCAGAAAAGGA+TGG | + | chr1.3:29541630-29541649 | None:intergenic | 30.0% | |
| GATAAAGGATACATGGAATA+TGG | - | chr1.3:29539160-29539179 | MS.gene53701:intron | 30.0% | |
| TAATCCTCCAAAATCAAATC+TGG | - | chr1.3:29539084-29539103 | MS.gene53701:CDS | 30.0% | |
| TACCTTATCCATGAAATAAC+AGG | + | chr1.3:29539649-29539668 | None:intergenic | 30.0% | |
| TAGACTAATCAAAACGCATA+TGG | + | chr1.3:29541042-29541061 | None:intergenic | 30.0% | |
| TATTAACTGTGGTGTTTGTA+TGG | - | chr1.3:29540322-29540341 | MS.gene53701:intron | 30.0% | |
| TCAAAAATCTCATTGCAACA+AGG | + | chr1.3:29539307-29539326 | None:intergenic | 30.0% | |
| TTTGCAAGATAAAGGATACA+TGG | - | chr1.3:29539153-29539172 | MS.gene53701:intron | 30.0% | |
| TTTGTTTCATATCATTCAGC+CGG | - | chr1.3:29539391-29539410 | MS.gene53701:intron | 30.0% | |
| ! | AAATATTTTATGGGATCGGA+GGG | + | chr1.3:29540745-29540764 | None:intergenic | 30.0% |
| ! | TAAATATTTTATGGGATCGG+AGG | + | chr1.3:29540746-29540765 | None:intergenic | 30.0% |
| ! | TTCATGTCTTATTGTTGCTT+TGG | - | chr1.3:29542007-29542026 | MS.gene53701:intron | 30.0% |
| !! | AACAGGTGTTTTTATCAACT+TGG | - | chr1.3:29539581-29539600 | MS.gene53701:CDS | 30.0% |
| !! | AAGGATTCCAGATTTGATTT+TGG | + | chr1.3:29539094-29539113 | None:intergenic | 30.0% |
| !! | ACAGGTGTTTTTATCAACTT+GGG | - | chr1.3:29539582-29539601 | MS.gene53701:CDS | 30.0% |
| !! | GAGAACTGACCATTTTATTT+TGG | + | chr1.3:29541779-29541798 | None:intergenic | 30.0% |
| !! | TGATGCTTTTTACTACTTTC+AGG | - | chr1.3:29540286-29540305 | MS.gene53701:CDS | 30.0% |
| !! | TTCCTGTTATTTCATGGATA+AGG | - | chr1.3:29539644-29539663 | MS.gene53701:intron | 30.0% |
| !!! | CCTGTTTTTAGGGATTTATT+TGG | - | chr1.3:29540808-29540827 | MS.gene53701:intron | 30.0% |
| !!! | GATGGTAACATGTTTTAATG+CGG | - | chr1.3:29540648-29540667 | MS.gene53701:intron | 30.0% |
| !!! | GTCTGTTTTTATATTTCTGG+AGG | - | chr1.3:29541443-29541462 | MS.gene53701:intron | 30.0% |
| !!! | TCAACTTTACCCTGTTTTTA+GGG | - | chr1.3:29540798-29540817 | MS.gene53701:intron | 30.0% |
| !!! | TGATATTTTTTGCACAGAAC+TGG | - | chr1.3:29540959-29540978 | MS.gene53701:intron | 30.0% |
| AAATGTTACCTCGAAACACA+CGG | + | chr1.3:29541194-29541213 | None:intergenic | 35.0% | |
| AAATTCCACAGCCATTACAA+TGG | + | chr1.3:29540564-29540583 | None:intergenic | 35.0% | |
| ACTTGATATGAATGACAGGT+AGG | + | chr1.3:29541967-29541986 | None:intergenic | 35.0% | |
| ATGAAATGAGAGAACATCAC+CGG | - | chr1.3:29541569-29541588 | MS.gene53701:intron | 35.0% | |
| CAAAAAGGAATCTCATTCCT+AGG | + | chr1.3:29540401-29540420 | None:intergenic | 35.0% | |
| CAGCCAAATTGTATTAACTG+TGG | - | chr1.3:29540311-29540330 | MS.gene53701:intron | 35.0% | |
| CATTGAGAGTCAGTTATTTG+TGG | - | chr1.3:29542076-29542095 | MS.gene53701:intron | 35.0% | |
| CGATATGCACATGTATGTAT+TGG | - | chr1.3:29541880-29541899 | MS.gene53701:intron | 35.0% | |
| CTGTTAAGCTTATTACTGTC+TGG | - | chr1.3:29540060-29540079 | MS.gene53701:intron | 35.0% | |
| CTTGTATTTGCTTGTATACC+AGG | - | chr1.3:29541655-29541674 | MS.gene53701:intron | 35.0% | |
| CTTGTTCATATGCTTCTTTC+TGG | - | chr1.3:29539190-29539209 | MS.gene53701:intron | 35.0% | |
| GAATATAATACATGCCCACT+AGG | - | chr1.3:29539945-29539964 | MS.gene53701:intron | 35.0% | |
| GCAGGTATGAAATGATAATC+TGG | - | chr1.3:29540584-29540603 | MS.gene53701:intron | 35.0% | |
| TAACCAACAGTAAGGAAAAG+CGG | + | chr1.3:29541801-29541820 | None:intergenic | 35.0% | |
| TCAATGCATATTGAAGGAGA+AGG | + | chr1.3:29542062-29542081 | None:intergenic | 35.0% | |
| TCATGGTTTAGAAACAGCTT+AGG | - | chr1.3:29541221-29541240 | MS.gene53701:intron | 35.0% | |
| TGACTCTCAATGCATATTGA+AGG | + | chr1.3:29542068-29542087 | None:intergenic | 35.0% | |
| TGGATAGAACACTAAGAACT+AGG | - | chr1.3:29541900-29541919 | MS.gene53701:intron | 35.0% | |
| TTAAGCTTATTACTGTCTGG+AGG | - | chr1.3:29540063-29540082 | MS.gene53701:intron | 35.0% | |
| TTCTTCCATTGTAACAAGTG+TGG | - | chr1.3:29540995-29541014 | MS.gene53701:intron | 35.0% | |
| ! | GGAAAAGGTGCAAAAATTTG+TGG | + | chr1.3:29539628-29539647 | None:intergenic | 35.0% |
| !! | ATATAATCATAGGGAGCACT+AGG | + | chr1.3:29540001-29540020 | None:intergenic | 35.0% |
| !! | ATGTCTTATTGTTGCTTTGG+AGG | - | chr1.3:29542010-29542029 | MS.gene53701:intron | 35.0% |
| !! | CAGGTGTTTTTATCAACTTG+GGG | - | chr1.3:29539583-29539602 | MS.gene53701:CDS | 35.0% |
| !! | CTCAACTTTACCCTGTTTTT+AGG | - | chr1.3:29540797-29540816 | MS.gene53701:intron | 35.0% |
| !! | GATTCCAGATTTGATTTTGG+AGG | + | chr1.3:29539091-29539110 | None:intergenic | 35.0% |
| !!! | CACCTTTTCCTGTTATTTCA+TGG | - | chr1.3:29539638-29539657 | MS.gene53701:intron | 35.0% |
| !!! | TATTTTTTGCACAGAACTGG+TGG | - | chr1.3:29540962-29540981 | MS.gene53701:intron | 35.0% |
| AAAATGGAACCGAACATGAC+CGG | + | chr1.3:29542187-29542206 | None:intergenic | 40.0% | |
| AAACAGTTTCAGCCAGCATA+TGG | + | chr1.3:29540157-29540176 | None:intergenic | 40.0% | |
| AAGCAGCAGTACCATTGTAA+TGG | - | chr1.3:29540550-29540569 | MS.gene53701:intron | 40.0% | |
| AATGTTACCTCGAAACACAC+GGG | + | chr1.3:29541193-29541212 | None:intergenic | 40.0% | |
| ACAGGGTAAAGTTGAGTACT+AGG | + | chr1.3:29540793-29540812 | None:intergenic | 40.0% | |
| ACTTTGTGCAACTGAACAAG+AGG | - | chr1.3:29539721-29539740 | MS.gene53701:CDS | 40.0% | |
| AGAACGACTTCGAACATAGA+GGG | + | chr1.3:29541689-29541708 | None:intergenic | 40.0% | |
| AGTCGTTCTGTGATATGTCA+AGG | - | chr1.3:29541700-29541719 | MS.gene53701:CDS | 40.0% | |
| ATAATACATGCCCACTAGGT+TGG | - | chr1.3:29539949-29539968 | MS.gene53701:intron | 40.0% | |
| ATCAGTTAAGGCAAGGCAAA+AGG | + | chr1.3:29540933-29540952 | None:intergenic | 40.0% | |
| CTGTGATATGTCAAGGGTTT+GGG | - | chr1.3:29541707-29541726 | MS.gene53701:CDS | 40.0% | |
| GCAAGGAATTAGAGTCTACA+AGG | + | chr1.3:29539979-29539998 | None:intergenic | 40.0% | |
| GTCGTTCTGTGATATGTCAA+GGG | - | chr1.3:29541701-29541720 | MS.gene53701:CDS | 40.0% | |
| TACACTAGTTATAGACTCGC+TGG | + | chr1.3:29540497-29540516 | None:intergenic | 40.0% | |
| TCTGTGATATGTCAAGGGTT+TGG | - | chr1.3:29541706-29541725 | MS.gene53701:CDS | 40.0% | |
| TGGAGGATTAACGTCTTCTT+GGG | + | chr1.3:29539074-29539093 | None:intergenic | 40.0% | |
| TGTTATAGGAGTTGCAGTTG+AGG | + | chr1.3:29542224-29542243 | None:intergenic | 40.0% | |
| TTGGAGGATTAACGTCTTCT+TGG | + | chr1.3:29539075-29539094 | None:intergenic | 40.0% | |
| ! | ATTCCAGATGTTTTGCGCTA+TGG | - | chr1.3:29540088-29540107 | MS.gene53701:CDS | 40.0% |
| ! | CTTTTGCCTCATTGTGACAA+TGG | + | chr1.3:29539336-29539355 | None:intergenic | 40.0% |
| ! | GAAATTGTTGTTATGCCGTG+CGG | - | chr1.3:29541520-29541539 | MS.gene53701:intron | 40.0% |
| ! | GCTTACCACACTTGTTACAA+TGG | + | chr1.3:29541003-29541022 | None:intergenic | 40.0% |
| ! | TCATGTTCGGTTCCATTTTG+TGG | - | chr1.3:29542188-29542207 | MS.gene53701:CDS | 40.0% |
| ! | TTATGGATTGTATGTCCGCA+CGG | + | chr1.3:29541538-29541557 | None:intergenic | 40.0% |
| ! | TTTTGGTATTGCTCAGGCAT+TGG | + | chr1.3:29541762-29541781 | None:intergenic | 40.0% |
| !!! | GGCATTTTAGAGCCACAAAA+TGG | + | chr1.3:29542203-29542222 | None:intergenic | 40.0% |
| ACAGGATCCAAACCTGTTAC+GGG | + | chr1.3:29542146-29542165 | None:intergenic | 45.0% | |
| ATGTTACCTCGAAACACACG+GGG | + | chr1.3:29541192-29541211 | None:intergenic | 45.0% | |
| CACAGGATCCAAACCTGTTA+CGG | + | chr1.3:29542147-29542166 | None:intergenic | 45.0% | |
| CAGAACGACTTCGAACATAG+AGG | + | chr1.3:29541690-29541709 | None:intergenic | 45.0% | |
| CAGTACCATTGTAATGGCTG+TGG | - | chr1.3:29540556-29540575 | MS.gene53701:intron | 45.0% | |
| CATAGCACAAGACCATATGC+TGG | - | chr1.3:29540142-29540161 | MS.gene53701:intron | 45.0% | |
| CTACCATAGCGCAAAACATC+TGG | + | chr1.3:29540094-29540113 | None:intergenic | 45.0% | |
| CTGATTGTGTTACCCGTAAC+AGG | - | chr1.3:29542131-29542150 | MS.gene53701:CDS | 45.0% | |
| GATGGAGAACTGAAGAGACT+AGG | + | chr1.3:29541612-29541631 | None:intergenic | 45.0% | |
| GTAATGGCTGTGGAATTTGC+AGG | - | chr1.3:29540566-29540585 | MS.gene53701:intron | 45.0% | |
| TATAACACACGACAGACGAG+AGG | - | chr1.3:29542237-29542256 | MS.gene53701:CDS | 45.0% | |
| TCTCGTCTGTCGTGTGTTAT+AGG | + | chr1.3:29542238-29542257 | None:intergenic | 45.0% | |
| TGTGTTACCCGTAACAGGTT+TGG | - | chr1.3:29542136-29542155 | MS.gene53701:CDS | 45.0% | |
| TTGCCTCATTGTGACAATGG+CGG | + | chr1.3:29539333-29539352 | None:intergenic | 45.0% | |
| TTTGCAGATGCCAACACTAC+CGG | - | chr1.3:29539260-29539279 | MS.gene53701:intron | 45.0% | |
| ! | ACATAGAGGGCATGTATACC+TGG | + | chr1.3:29541676-29541695 | None:intergenic | 45.0% |
| ! | ATTTTATGGGATCGGAGGGA+GGG | + | chr1.3:29540741-29540760 | None:intergenic | 45.0% |
| ! | TATTTTATGGGATCGGAGGG+AGG | + | chr1.3:29540742-29540761 | None:intergenic | 45.0% |
| ! | TCAAATCTGGAATCCTTGCC+TGG | - | chr1.3:29539097-29539116 | MS.gene53701:CDS | 45.0% |
| ! | TTGTTGCTTCTCAACTCTGC+TGG | - | chr1.3:29541123-29541142 | MS.gene53701:intron | 45.0% |
| !! | ACACCTGTTTGACTTGGTGT+CGG | + | chr1.3:29539570-29539589 | None:intergenic | 45.0% |
| !! | CAGCATATGGTCTTGTGCTA+TGG | + | chr1.3:29540144-29540163 | None:intergenic | 45.0% |
| !! | TCTCCGCTTTTCCTTACTGT+TGG | - | chr1.3:29541795-29541814 | MS.gene53701:intron | 45.0% |
| !!! | TACTATTTTTTTTTTTTTTT+TGG | - | chr1.3:29539894-29539913 | MS.gene53701:intron | 5.0% |
| AACAGTCACACCTGTGTGGA+AGG | - | chr1.3:29541148-29541167 | MS.gene53701:intron | 50.0% | |
| ACAAGGTGTGCCAACCTAGT+GGG | + | chr1.3:29539962-29539981 | None:intergenic | 50.0% | |
| ATGCATTGCTCCTTCCACAC+AGG | + | chr1.3:29541161-29541180 | None:intergenic | 50.0% | |
| GATTCCCTTGATGCTTCTCC+AGG | + | chr1.3:29539118-29539137 | None:intergenic | 50.0% | |
| GGAAAACAGTCACACCTGTG+TGG | - | chr1.3:29541144-29541163 | MS.gene53701:intron | 50.0% | |
| GTCAAGGGTTTGGGAGAGAT+TGG | - | chr1.3:29541716-29541735 | MS.gene53701:CDS | 50.0% | |
| TACAAGGTGTGCCAACCTAG+TGG | + | chr1.3:29539963-29539982 | None:intergenic | 50.0% | |
| TGCAACAAGGAGCCCTGATT+CGG | + | chr1.3:29539294-29539313 | None:intergenic | 50.0% | |
| TGCAATGACTGCGGAAACAC+CGG | - | chr1.3:29542165-29542184 | MS.gene53701:CDS | 50.0% | |
| TGGATCCTGTGCAATGACTG+CGG | - | chr1.3:29542156-29542175 | MS.gene53701:CDS | 50.0% | |
| TGTTTCCGCAGTCATTGCAC+AGG | + | chr1.3:29542164-29542183 | None:intergenic | 50.0% | |
| TTGCCGCCATTGTCACAATG+AGG | - | chr1.3:29539327-29539346 | MS.gene53701:intron | 50.0% | |
| !! | ACCTGTTTGACTTGGTGTCG+GGG | + | chr1.3:29539568-29539587 | None:intergenic | 50.0% |
| !! | ATCATAGGGAGCACTAGGCA+AGG | + | chr1.3:29539996-29540015 | None:intergenic | 50.0% |
| !! | CACCTGTTTGACTTGGTGTC+GGG | + | chr1.3:29539569-29539588 | None:intergenic | 50.0% |
| !! | CTTGCCTGGAGAAGCATCAA+GGG | - | chr1.3:29539111-29539130 | MS.gene53701:intron | 50.0% |
| ACCGGAGAAGATGCCGAATC+AGG | - | chr1.3:29539278-29539297 | MS.gene53701:intron | 55.0% | |
| CCGGAGAAGATGCCGAATCA+GGG | - | chr1.3:29539279-29539298 | MS.gene53701:intron | 55.0% | |
| CCTTGATGCTTCTCCAGGCA+AGG | + | chr1.3:29539113-29539132 | None:intergenic | 55.0% | |
| GCGGAAACACCGGTCATGTT+CGG | - | chr1.3:29542175-29542194 | MS.gene53701:CDS | 55.0% | |
| GGCATCTTCTCCGGTAGTGT+TGG | + | chr1.3:29539273-29539292 | None:intergenic | 55.0% | |
| TGATTGCCCCGTGTGTTTCG+AGG | - | chr1.3:29541183-29541202 | MS.gene53701:intron | 55.0% | |
| ! | GGAGCTTTGTGAGCACTCAC+CGG | + | chr1.3:29541591-29541610 | None:intergenic | 55.0% |
| !! | CCCTGATTCGGCATCTTCTC+CGG | + | chr1.3:29539282-29539301 | None:intergenic | 55.0% |
| !! | CCTTGCCTGGAGAAGCATCA+AGG | - | chr1.3:29539110-29539129 | MS.gene53701:CDS | 55.0% |
| GCCCCGACACCAAGTCAAAC+AGG | - | chr1.3:29539564-29539583 | MS.gene53701:CDS | 60.0% | |
| TTATGGGATCGGAGGGAGGG+TGG | + | chr1.3:29540738-29540757 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 29539019 | 29542263 | 29539019 | ID=MS.gene53701 |
| chr1.3 | mRNA | 29539019 | 29542263 | 29539019 | ID=MS.gene53701.t1;Parent=MS.gene53701 |
| chr1.3 | exon | 29542100 | 29542263 | 29542100 | ID=MS.gene53701.t1.exon1;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29542100 | 29542263 | 29542100 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29541928 | 29542015 | 29541928 | ID=MS.gene53701.t1.exon2;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29541928 | 29542015 | 29541928 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29541697 | 29541756 | 29541697 | ID=MS.gene53701.t1.exon3;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29541697 | 29541756 | 29541697 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29541540 | 29541572 | 29541540 | ID=MS.gene53701.t1.exon4;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29541540 | 29541572 | 29541540 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29540897 | 29540974 | 29540897 | ID=MS.gene53701.t1.exon5;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29540897 | 29540974 | 29540897 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29540695 | 29540738 | 29540695 | ID=MS.gene53701.t1.exon6;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29540695 | 29540738 | 29540695 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29540266 | 29540306 | 29540266 | ID=MS.gene53701.t1.exon7;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29540266 | 29540306 | 29540266 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29540078 | 29540160 | 29540078 | ID=MS.gene53701.t1.exon8;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29540078 | 29540160 | 29540078 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29539692 | 29539783 | 29539692 | ID=MS.gene53701.t1.exon9;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29539692 | 29539783 | 29539692 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29539494 | 29539605 | 29539494 | ID=MS.gene53701.t1.exon10;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29539494 | 29539605 | 29539494 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| chr1.3 | exon | 29539019 | 29539129 | 29539019 | ID=MS.gene53701.t1.exon11;Parent=MS.gene53701.t1 |
| chr1.3 | CDS | 29539019 | 29539129 | 29539019 | ID=cds.MS.gene53701.t1;Parent=MS.gene53701.t1 |
| Gene Sequence |
| Protein sequence |
