Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54671.t1 | XP_013450859.1 | 97.8 | 320 | 7 | 0 | 1 | 320 | 153 | 472 | 9.10E-193 | 682.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54671.t1 | Q9LRS2 | 53.7 | 307 | 140 | 2 | 2 | 307 | 107 | 412 | 1.0e-104 | 381.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54671.t1 | A0A072U5A0 | 97.8 | 320 | 7 | 0 | 1 | 320 | 153 | 472 | 6.5e-193 | 682.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049159 | MS.gene54671 | 0.802494 | 5.46E-49 | -1.69E-46 |
| MS.gene050226 | MS.gene54671 | 0.801084 | 1.06E-48 | -1.69E-46 |
| MS.gene050228 | MS.gene54671 | 0.800904 | 1.16E-48 | -1.69E-46 |
| MS.gene050442 | MS.gene54671 | 0.833775 | 4.39E-56 | -1.69E-46 |
| MS.gene050724 | MS.gene54671 | 0.805879 | 1.08E-49 | -1.69E-46 |
| MS.gene050844 | MS.gene54671 | 0.801017 | 1.10E-48 | -1.69E-46 |
| MS.gene051265 | MS.gene54671 | 0.802749 | 4.84E-49 | -1.69E-46 |
| MS.gene053166 | MS.gene54671 | 0.801917 | 7.18E-49 | -1.69E-46 |
| MS.gene053641 | MS.gene54671 | 0.806579 | 7.68E-50 | -1.69E-46 |
| MS.gene05417 | MS.gene54671 | 0.820129 | 8.08E-53 | -1.69E-46 |
| MS.gene054236 | MS.gene54671 | 0.817846 | 2.67E-52 | -1.69E-46 |
| MS.gene054467 | MS.gene54671 | 0.827258 | 1.73E-54 | -1.69E-46 |
| MS.gene054468 | MS.gene54671 | 0.821923 | 3.12E-53 | -1.69E-46 |
| MS.gene05468 | MS.gene54671 | 0.817426 | 3.32E-52 | -1.69E-46 |
| MS.gene055356 | MS.gene54671 | 0.80527 | 1.45E-49 | -1.69E-46 |
| MS.gene055701 | MS.gene54671 | 0.812103 | 5.02E-51 | -1.69E-46 |
| MS.gene059128 | MS.gene54671 | 0.802803 | 4.72E-49 | -1.69E-46 |
| MS.gene060011 | MS.gene54671 | 0.809179 | 2.15E-50 | -1.69E-46 |
| MS.gene060322 | MS.gene54671 | 0.809088 | 2.25E-50 | -1.69E-46 |
| MS.gene060683 | MS.gene54671 | 0.800546 | 1.37E-48 | -1.69E-46 |
| MS.gene060685 | MS.gene54671 | 0.802489 | 5.48E-49 | -1.69E-46 |
| MS.gene060802 | MS.gene54671 | 0.805757 | 1.14E-49 | -1.69E-46 |
| MS.gene060998 | MS.gene54671 | 0.807506 | 4.89E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54671.t1 | MTR_6g007777 | 97.812 | 320 | 7 | 0 | 1 | 320 | 153 | 472 | 0.0 | 659 |
| MS.gene54671.t1 | MTR_6g016880 | 45.338 | 311 | 163 | 5 | 2 | 308 | 115 | 422 | 7.21e-97 | 293 |
| MS.gene54671.t1 | MTR_7g019120 | 45.513 | 312 | 163 | 4 | 2 | 309 | 116 | 424 | 9.49e-96 | 290 |
| MS.gene54671.t1 | MTR_8g027900 | 37.500 | 312 | 183 | 4 | 2 | 305 | 248 | 555 | 1.16e-79 | 253 |
| MS.gene54671.t1 | MTR_6g016875 | 42.587 | 317 | 170 | 8 | 2 | 310 | 101 | 413 | 9.44e-79 | 246 |
| MS.gene54671.t1 | MTR_5g035090 | 39.048 | 315 | 178 | 7 | 2 | 307 | 120 | 429 | 3.19e-78 | 245 |
| MS.gene54671.t1 | MTR_5g035150 | 39.683 | 315 | 178 | 6 | 2 | 307 | 122 | 433 | 5.46e-76 | 239 |
| MS.gene54671.t1 | MTR_8g099300 | 38.413 | 315 | 177 | 6 | 2 | 305 | 111 | 419 | 1.29e-74 | 236 |
| MS.gene54671.t1 | MTR_2g016060 | 40.248 | 323 | 169 | 11 | 2 | 309 | 91 | 404 | 1.80e-71 | 227 |
| MS.gene54671.t1 | MTR_5g035080 | 36.991 | 319 | 180 | 8 | 2 | 307 | 112 | 422 | 1.80e-70 | 225 |
| MS.gene54671.t1 | MTR_8g104970 | 36.111 | 324 | 190 | 9 | 2 | 314 | 157 | 474 | 3.01e-70 | 226 |
| MS.gene54671.t1 | MTR_5g035070 | 39.365 | 315 | 179 | 6 | 2 | 307 | 124 | 435 | 4.25e-70 | 224 |
| MS.gene54671.t1 | MTR_3g109840 | 35.443 | 316 | 187 | 8 | 2 | 307 | 109 | 417 | 1.17e-66 | 215 |
| MS.gene54671.t1 | MTR_7g033230 | 35.443 | 316 | 189 | 8 | 2 | 307 | 301 | 611 | 1.09e-63 | 212 |
| MS.gene54671.t1 | MTR_7g033230 | 35.443 | 316 | 189 | 8 | 2 | 307 | 371 | 681 | 4.87e-63 | 211 |
| MS.gene54671.t1 | MTR_6g061710 | 34.251 | 327 | 182 | 8 | 2 | 308 | 204 | 517 | 5.42e-61 | 203 |
| MS.gene54671.t1 | MTR_1g076690 | 34.062 | 320 | 192 | 8 | 2 | 308 | 260 | 573 | 1.09e-59 | 201 |
| MS.gene54671.t1 | MTR_5g035140 | 33.086 | 269 | 161 | 8 | 52 | 308 | 7 | 268 | 1.15e-46 | 159 |
| MS.gene54671.t1 | MTR_7g094750 | 28.086 | 324 | 200 | 12 | 2 | 308 | 128 | 435 | 5.31e-37 | 137 |
| MS.gene54671.t1 | MTR_4g126950 | 31.056 | 322 | 183 | 13 | 2 | 305 | 146 | 446 | 1.97e-35 | 133 |
| MS.gene54671.t1 | MTR_7g109550 | 29.969 | 327 | 177 | 15 | 1 | 306 | 173 | 468 | 1.41e-34 | 131 |
| MS.gene54671.t1 | MTR_0136s0010 | 30.488 | 328 | 179 | 12 | 2 | 305 | 207 | 509 | 1.80e-33 | 129 |
| MS.gene54671.t1 | MTR_2g022560 | 27.653 | 311 | 205 | 10 | 5 | 305 | 137 | 437 | 1.36e-32 | 125 |
| MS.gene54671.t1 | MTR_3g021060 | 27.508 | 309 | 195 | 8 | 1 | 306 | 82 | 364 | 1.96e-32 | 124 |
| MS.gene54671.t1 | MTR_7g093450 | 29.674 | 337 | 188 | 15 | 2 | 312 | 285 | 598 | 1.32e-31 | 124 |
| MS.gene54671.t1 | MTR_4g125060 | 26.875 | 320 | 186 | 9 | 9 | 305 | 177 | 471 | 1.97e-30 | 120 |
| MS.gene54671.t1 | MTR_4g125060 | 26.875 | 320 | 186 | 9 | 9 | 305 | 216 | 510 | 2.03e-30 | 120 |
| MS.gene54671.t1 | MTR_4g125060 | 26.875 | 320 | 186 | 9 | 9 | 305 | 245 | 539 | 2.91e-30 | 120 |
| MS.gene54671.t1 | MTR_3g035830 | 27.157 | 313 | 189 | 12 | 1 | 305 | 67 | 348 | 6.06e-29 | 114 |
| MS.gene54671.t1 | MTR_3g021090 | 27.597 | 308 | 186 | 11 | 1 | 301 | 67 | 344 | 7.67e-29 | 115 |
| MS.gene54671.t1 | MTR_1g058380 | 28.049 | 328 | 195 | 14 | 2 | 310 | 94 | 399 | 8.72e-29 | 114 |
| MS.gene54671.t1 | MTR_8g093530 | 27.726 | 321 | 190 | 11 | 2 | 308 | 127 | 419 | 1.64e-28 | 114 |
| MS.gene54671.t1 | MTR_5g059400 | 27.019 | 322 | 199 | 12 | 2 | 305 | 212 | 515 | 6.33e-28 | 113 |
| MS.gene54671.t1 | MTR_1g116130 | 27.019 | 322 | 199 | 12 | 2 | 305 | 212 | 515 | 6.33e-28 | 113 |
| MS.gene54671.t1 | MTR_5g033800 | 26.543 | 324 | 204 | 12 | 2 | 309 | 182 | 487 | 1.02e-27 | 112 |
| MS.gene54671.t1 | MTR_8g069790 | 26.667 | 330 | 198 | 13 | 1 | 309 | 214 | 520 | 2.01e-27 | 112 |
| MS.gene54671.t1 | MTR_4g016940 | 26.183 | 317 | 208 | 10 | 2 | 305 | 124 | 427 | 1.03e-26 | 109 |
| MS.gene54671.t1 | MTR_4g121560 | 26.687 | 326 | 193 | 11 | 2 | 305 | 152 | 453 | 3.98e-26 | 108 |
| MS.gene54671.t1 | MTR_5g083260 | 27.554 | 323 | 196 | 14 | 2 | 305 | 121 | 424 | 5.41e-26 | 107 |
| MS.gene54671.t1 | MTR_5g071350 | 27.077 | 325 | 196 | 11 | 2 | 305 | 95 | 399 | 1.60e-25 | 105 |
| MS.gene54671.t1 | MTR_6g016240 | 25.234 | 321 | 222 | 6 | 3 | 312 | 110 | 423 | 2.34e-25 | 105 |
| MS.gene54671.t1 | MTR_7g019130 | 38.710 | 124 | 72 | 2 | 85 | 207 | 4 | 124 | 2.01e-24 | 97.1 |
| MS.gene54671.t1 | MTR_8g093870 | 26.791 | 321 | 195 | 11 | 4 | 305 | 173 | 472 | 2.30e-24 | 103 |
| MS.gene54671.t1 | MTR_4g092830 | 28.846 | 312 | 199 | 11 | 7 | 305 | 91 | 392 | 3.70e-24 | 102 |
| MS.gene54671.t1 | MTR_2g015720 | 26.214 | 309 | 197 | 9 | 2 | 306 | 78 | 359 | 1.48e-23 | 99.8 |
| MS.gene54671.t1 | MTR_3g464570 | 26.582 | 316 | 201 | 11 | 2 | 305 | 80 | 376 | 3.50e-23 | 99.0 |
| MS.gene54671.t1 | MTR_5g034810 | 27.597 | 308 | 194 | 12 | 2 | 305 | 70 | 352 | 4.40e-23 | 98.2 |
| MS.gene54671.t1 | MTR_3g071650 | 26.168 | 321 | 203 | 11 | 2 | 305 | 127 | 430 | 4.50e-23 | 99.0 |
| MS.gene54671.t1 | MTR_1g112210 | 26.087 | 322 | 186 | 14 | 2 | 305 | 95 | 382 | 5.01e-23 | 98.6 |
| MS.gene54671.t1 | MTR_1g112210 | 26.791 | 321 | 172 | 13 | 2 | 305 | 95 | 369 | 5.63e-23 | 98.2 |
| MS.gene54671.t1 | MTR_3g090120 | 26.498 | 317 | 199 | 11 | 2 | 308 | 170 | 462 | 1.02e-22 | 98.6 |
| MS.gene54671.t1 | MTR_2g073500 | 26.367 | 311 | 185 | 12 | 2 | 305 | 72 | 345 | 1.37e-22 | 96.7 |
| MS.gene54671.t1 | MTR_1g050448 | 27.245 | 323 | 180 | 14 | 2 | 305 | 89 | 375 | 1.49e-22 | 97.1 |
| MS.gene54671.t1 | MTR_3g070900 | 26.625 | 323 | 193 | 13 | 2 | 301 | 144 | 445 | 6.72e-22 | 95.9 |
| MS.gene54671.t1 | MTR_7g068920 | 24.921 | 317 | 212 | 9 | 2 | 305 | 118 | 421 | 1.13e-20 | 92.0 |
| MS.gene54671.t1 | MTR_1g111010 | 29.712 | 313 | 169 | 14 | 2 | 305 | 71 | 341 | 1.14e-20 | 91.3 |
| MS.gene54671.t1 | MTR_4g014440 | 23.438 | 320 | 217 | 9 | 2 | 305 | 100 | 407 | 2.52e-20 | 91.3 |
| MS.gene54671.t1 | MTR_4g087730 | 27.097 | 310 | 193 | 13 | 1 | 305 | 81 | 362 | 2.56e-20 | 90.5 |
| MS.gene54671.t1 | MTR_7g019140 | 66.071 | 56 | 19 | 0 | 2 | 57 | 116 | 171 | 7.09e-20 | 85.5 |
| MS.gene54671.t1 | MTR_2g073510 | 26.129 | 310 | 188 | 14 | 2 | 301 | 71 | 349 | 1.53e-19 | 88.2 |
| MS.gene54671.t1 | MTR_4g088030 | 26.045 | 311 | 193 | 11 | 2 | 305 | 70 | 350 | 1.57e-19 | 88.2 |
| MS.gene54671.t1 | MTR_8g463790 | 23.780 | 328 | 199 | 13 | 2 | 305 | 109 | 409 | 2.28e-19 | 88.2 |
| MS.gene54671.t1 | MTR_7g094750 | 27.700 | 213 | 130 | 9 | 2 | 202 | 128 | 328 | 3.21e-19 | 87.0 |
| MS.gene54671.t1 | MTR_7g070060 | 23.988 | 321 | 214 | 11 | 2 | 305 | 102 | 409 | 1.41e-18 | 85.9 |
| MS.gene54671.t1 | MTR_2g091175 | 28.025 | 314 | 182 | 13 | 2 | 305 | 87 | 366 | 2.27e-18 | 85.1 |
| MS.gene54671.t1 | MTR_5g082880 | 24.545 | 330 | 194 | 16 | 2 | 301 | 203 | 507 | 2.06e-16 | 80.1 |
| MS.gene54671.t1 | MTR_5g035120 | 50.000 | 54 | 27 | 0 | 2 | 55 | 112 | 165 | 2.57e-15 | 73.2 |
| MS.gene54671.t1 | MTR_3g464570 | 24.913 | 289 | 186 | 11 | 29 | 305 | 3 | 272 | 9.60e-15 | 73.6 |
| MS.gene54671.t1 | MTR_0929s0020 | 40.000 | 75 | 44 | 1 | 85 | 158 | 4 | 78 | 1.87e-13 | 65.5 |
| MS.gene54671.t1 | MTR_5g033800 | 28.571 | 140 | 90 | 4 | 2 | 134 | 182 | 318 | 1.40e-12 | 68.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54671.t1 | AT3G28150 | 53.746 | 307 | 140 | 2 | 2 | 307 | 107 | 412 | 1.05e-124 | 363 |
| MS.gene54671.t1 | AT5G15900 | 42.812 | 313 | 169 | 7 | 2 | 308 | 104 | 412 | 1.69e-81 | 253 |
| MS.gene54671.t1 | AT5G15900 | 42.812 | 313 | 169 | 7 | 2 | 308 | 123 | 431 | 2.39e-81 | 254 |
| MS.gene54671.t1 | AT5G15890 | 38.907 | 311 | 177 | 5 | 2 | 308 | 224 | 525 | 2.60e-81 | 256 |
| MS.gene54671.t1 | AT3G02440 | 42.444 | 311 | 168 | 7 | 2 | 306 | 172 | 477 | 3.55e-80 | 252 |
| MS.gene54671.t1 | AT3G02440 | 42.444 | 311 | 168 | 7 | 2 | 306 | 164 | 469 | 4.38e-80 | 251 |
| MS.gene54671.t1 | AT1G01430 | 37.578 | 322 | 185 | 5 | 2 | 311 | 136 | 453 | 4.09e-76 | 240 |
| MS.gene54671.t1 | AT4G01080 | 37.778 | 315 | 180 | 4 | 2 | 308 | 128 | 434 | 3.81e-75 | 238 |
| MS.gene54671.t1 | AT4G23790 | 37.778 | 315 | 181 | 6 | 2 | 305 | 117 | 427 | 7.99e-74 | 234 |
| MS.gene54671.t1 | AT4G11090 | 36.538 | 312 | 187 | 4 | 2 | 305 | 117 | 425 | 8.52e-72 | 229 |
| MS.gene54671.t1 | AT1G70230 | 38.658 | 313 | 170 | 10 | 2 | 307 | 116 | 413 | 4.34e-71 | 226 |
| MS.gene54671.t1 | AT5G51640 | 34.118 | 340 | 186 | 9 | 2 | 316 | 175 | 501 | 2.69e-55 | 187 |
| MS.gene54671.t1 | AT4G25360 | 34.756 | 328 | 181 | 10 | 2 | 308 | 212 | 527 | 4.56e-55 | 187 |
| MS.gene54671.t1 | AT4G25360 | 34.756 | 328 | 181 | 10 | 2 | 308 | 212 | 527 | 4.56e-55 | 187 |
| MS.gene54671.t1 | AT5G20590 | 31.692 | 325 | 189 | 12 | 2 | 311 | 179 | 485 | 1.90e-38 | 142 |
| MS.gene54671.t1 | AT3G06080 | 28.165 | 316 | 205 | 9 | 5 | 308 | 143 | 448 | 3.22e-37 | 139 |
| MS.gene54671.t1 | AT2G14530 | 28.793 | 323 | 186 | 9 | 7 | 306 | 106 | 407 | 1.56e-35 | 133 |
| MS.gene54671.t1 | AT5G19160 | 27.778 | 324 | 208 | 9 | 5 | 312 | 139 | 452 | 2.26e-34 | 130 |
| MS.gene54671.t1 | AT5G06700 | 31.464 | 321 | 185 | 13 | 2 | 305 | 292 | 594 | 1.71e-31 | 124 |
| MS.gene54671.t1 | AT3G62390 | 26.032 | 315 | 198 | 12 | 1 | 301 | 174 | 467 | 2.02e-31 | 123 |
| MS.gene54671.t1 | AT3G11570 | 28.528 | 326 | 186 | 11 | 2 | 305 | 119 | 419 | 6.62e-31 | 120 |
| MS.gene54671.t1 | AT5G64470 | 28.125 | 320 | 201 | 10 | 7 | 308 | 99 | 407 | 9.97e-31 | 120 |
| MS.gene54671.t1 | AT5G64020 | 26.807 | 332 | 197 | 10 | 2 | 305 | 95 | 408 | 1.21e-30 | 120 |
| MS.gene54671.t1 | AT3G12060 | 29.907 | 321 | 190 | 13 | 2 | 305 | 233 | 535 | 1.91e-30 | 121 |
| MS.gene54671.t1 | AT5G64470 | 28.165 | 316 | 200 | 10 | 7 | 308 | 99 | 401 | 3.64e-30 | 118 |
| MS.gene54671.t1 | AT5G49340 | 27.950 | 322 | 197 | 12 | 2 | 305 | 137 | 441 | 1.70e-29 | 117 |
| MS.gene54671.t1 | AT5G20680 | 27.245 | 323 | 195 | 10 | 2 | 305 | 156 | 457 | 4.43e-29 | 116 |
| MS.gene54671.t1 | AT5G20680 | 27.245 | 323 | 195 | 10 | 2 | 305 | 232 | 533 | 7.78e-29 | 116 |
| MS.gene54671.t1 | AT5G20680 | 27.245 | 323 | 195 | 10 | 2 | 305 | 250 | 551 | 8.80e-29 | 116 |
| MS.gene54671.t1 | AT5G20680 | 27.245 | 323 | 195 | 10 | 2 | 305 | 250 | 551 | 8.80e-29 | 116 |
| MS.gene54671.t1 | AT5G20680 | 27.245 | 323 | 195 | 10 | 2 | 305 | 250 | 551 | 8.80e-29 | 116 |
| MS.gene54671.t1 | AT5G20680 | 27.245 | 323 | 195 | 10 | 2 | 305 | 250 | 551 | 8.80e-29 | 116 |
| MS.gene54671.t1 | AT1G48880 | 28.354 | 328 | 179 | 15 | 4 | 311 | 154 | 445 | 1.32e-28 | 114 |
| MS.gene54671.t1 | AT5G06230 | 27.900 | 319 | 197 | 14 | 2 | 305 | 64 | 364 | 7.58e-28 | 111 |
| MS.gene54671.t1 | AT1G60790 | 27.246 | 334 | 191 | 13 | 2 | 309 | 229 | 536 | 8.57e-28 | 113 |
| MS.gene54671.t1 | AT5G06230 | 27.900 | 319 | 197 | 14 | 2 | 305 | 105 | 405 | 1.56e-27 | 111 |
| MS.gene54671.t1 | AT3G11030 | 26.524 | 328 | 194 | 13 | 2 | 305 | 144 | 448 | 2.37e-27 | 111 |
| MS.gene54671.t1 | AT2G40320 | 27.414 | 321 | 199 | 13 | 2 | 305 | 119 | 422 | 1.73e-25 | 105 |
| MS.gene54671.t1 | AT5G01360 | 24.290 | 317 | 215 | 9 | 2 | 305 | 74 | 378 | 7.28e-25 | 103 |
| MS.gene54671.t1 | AT2G34070 | 25.723 | 311 | 197 | 10 | 2 | 306 | 102 | 384 | 1.26e-24 | 103 |
| MS.gene54671.t1 | AT5G01360 | 24.290 | 317 | 215 | 9 | 2 | 305 | 130 | 434 | 1.33e-24 | 103 |
| MS.gene54671.t1 | AT1G29050 | 26.316 | 323 | 177 | 12 | 2 | 305 | 98 | 378 | 1.77e-24 | 102 |
| MS.gene54671.t1 | AT1G78710 | 27.273 | 308 | 195 | 11 | 2 | 305 | 74 | 356 | 2.78e-24 | 101 |
| MS.gene54671.t1 | AT1G73140 | 26.380 | 326 | 197 | 15 | 2 | 307 | 105 | 407 | 2.25e-23 | 99.8 |
| MS.gene54671.t1 | AT2G30010 | 25.373 | 335 | 186 | 13 | 2 | 305 | 95 | 396 | 3.96e-23 | 99.0 |
| MS.gene54671.t1 | AT2G30010 | 25.373 | 335 | 186 | 13 | 2 | 305 | 138 | 439 | 5.24e-23 | 99.0 |
| MS.gene54671.t1 | AT5G58600 | 25.157 | 318 | 203 | 10 | 2 | 305 | 104 | 400 | 3.38e-22 | 96.3 |
| MS.gene54671.t1 | AT2G40160 | 26.254 | 339 | 198 | 15 | 2 | 311 | 115 | 430 | 9.00e-22 | 95.5 |
| MS.gene54671.t1 | AT2G40160 | 25.915 | 328 | 192 | 14 | 2 | 301 | 115 | 419 | 4.57e-21 | 93.6 |
| MS.gene54671.t1 | AT2G42570 | 24.843 | 318 | 188 | 12 | 2 | 305 | 84 | 364 | 1.35e-19 | 88.6 |
| MS.gene54671.t1 | AT2G30900 | 27.564 | 312 | 192 | 14 | 2 | 305 | 80 | 365 | 2.17e-19 | 88.2 |
| MS.gene54671.t1 | AT3G54260 | 26.183 | 317 | 192 | 13 | 2 | 305 | 87 | 374 | 2.43e-19 | 88.2 |
| MS.gene54671.t1 | AT5G64470 | 27.679 | 224 | 148 | 6 | 7 | 223 | 99 | 315 | 2.44e-19 | 87.4 |
| MS.gene54671.t1 | AT5G64470 | 27.354 | 223 | 148 | 6 | 7 | 222 | 99 | 314 | 1.03e-18 | 85.5 |
| MS.gene54671.t1 | AT2G31110 | 26.433 | 314 | 188 | 13 | 2 | 305 | 82 | 362 | 2.59e-18 | 85.1 |
| MS.gene54671.t1 | AT3G06080 | 28.641 | 206 | 129 | 7 | 5 | 201 | 143 | 339 | 2.74e-17 | 81.6 |
| MS.gene54671.t1 | AT5G20590 | 30.144 | 209 | 127 | 7 | 2 | 201 | 179 | 377 | 3.57e-17 | 81.6 |
| MS.gene54671.t1 | AT2G40150 | 22.360 | 322 | 214 | 10 | 2 | 301 | 109 | 416 | 7.80e-17 | 81.3 |
| MS.gene54671.t1 | AT5G19160 | 26.341 | 205 | 135 | 5 | 5 | 201 | 139 | 335 | 1.11e-15 | 77.0 |
| MS.gene54671.t1 | AT3G62390 | 24.000 | 225 | 149 | 8 | 1 | 215 | 174 | 386 | 6.36e-15 | 75.5 |
| MS.gene54671.t1 | AT5G40180 | 48.750 | 80 | 19 | 2 | 34 | 112 | 1 | 59 | 9.04e-15 | 68.6 |
| MS.gene54671.t1 | AT2G40160 | 30.986 | 142 | 86 | 5 | 2 | 137 | 115 | 250 | 4.51e-13 | 69.3 |
| MS.gene54671.t1 | AT5G06230 | 26.389 | 216 | 133 | 10 | 2 | 204 | 105 | 307 | 2.81e-12 | 66.6 |
| MS.gene54671.t1 | AT3G55990 | 32.222 | 90 | 61 | 0 | 2 | 91 | 178 | 267 | 6.03e-12 | 66.6 |
| MS.gene54671.t1 | AT5G58600 | 28.358 | 134 | 89 | 3 | 2 | 135 | 104 | 230 | 5.04e-11 | 62.8 |
| MS.gene54671.t1 | AT1G78710 | 28.082 | 146 | 96 | 4 | 2 | 146 | 67 | 204 | 6.25e-11 | 62.8 |
Find 66 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAACATTAGGTTTGAGATTT+TGG | 0.100694 | 6.1:-3594259 | MS.gene54671:CDS |
| ATAGATTTGAATGGAATTTA+AGG | 0.109546 | 6.1:-3594329 | MS.gene54671:CDS |
| TCAACTTCACCTTTGTTTAT+AGG | 0.134740 | 6.1:+3594357 | None:intergenic |
| TTGGACTATGCAATAGTTTC+AGG | 0.231664 | 6.1:-3594636 | MS.gene54671:CDS |
| CAAGAGATGATGATGAGTTT+TGG | 0.249664 | 6.1:-3594075 | MS.gene54671:CDS |
| TATTGTTCGTGGCAAGAAAA+TGG | 0.258062 | 6.1:-3596838 | MS.gene54671:CDS |
| GTCAACATTGGGGAAATAAA+TGG | 0.286339 | 6.1:-3594194 | MS.gene54671:CDS |
| ATAATAATAAAGGGAACATT+AGG | 0.324659 | 6.1:-3594272 | MS.gene54671:CDS |
| GGTGAAGAAAGAATTGTAAA+TGG | 0.327992 | 6.1:-3594729 | MS.gene54671:CDS |
| GAGTCCTTGTGTATATCCTT+TGG | 0.337776 | 6.1:+3594831 | None:intergenic |
| GGCTAAAGTAATACCTGAAT+TGG | 0.341207 | 6.1:-3594655 | MS.gene54671:CDS |
| ACACTGGAGGGTATTGTAAT+AGG | 0.355757 | 6.1:-3594386 | MS.gene54671:CDS |
| ACTTCACTCTAATGATACTA+TGG | 0.364805 | 6.1:-3594770 | MS.gene54671:CDS |
| ACTATTGCATAGTCCAATTC+AGG | 0.372012 | 6.1:+3594642 | None:intergenic |
| TCGACAAAGTCGATGAAGAT+TGG | 0.375886 | 6.1:-3594677 | MS.gene54671:CDS |
| CATCAAGGTGGAAAATTACT+AGG | 0.376397 | 6.1:-3594582 | MS.gene54671:CDS |
| ATTGTAAATGGAACAGATAC+AGG | 0.384826 | 6.1:-3594717 | MS.gene54671:CDS |
| TTCTTTCTTCACCTACGATT+AGG | 0.385069 | 6.1:+3594739 | None:intergenic |
| TGGACATCCTGGTCAACATT+GGG | 0.397368 | 6.1:-3594205 | MS.gene54671:CDS |
| TTGATTTAAATAGATTTGAA+TGG | 0.400711 | 6.1:-3594338 | MS.gene54671:CDS |
| GTTATAATGATTGCACTCAT+TGG | 0.416048 | 6.1:-3594164 | MS.gene54671:CDS |
| ATTAGAGTGAAGTCATACTT+TGG | 0.417119 | 6.1:+3594780 | None:intergenic |
| ACAAACTAACCTGTGACAAT+AGG | 0.419256 | 6.1:+3596766 | None:intergenic |
| TTAGAGTGAAGTCATACTTT+GGG | 0.428231 | 6.1:+3594781 | None:intergenic |
| GGCAAGAAAATGGCTTTCAT+TGG | 0.428699 | 6.1:-3596828 | MS.gene54671:CDS |
| TGCCCGGTGCTATTGATGTT+TGG | 0.434824 | 6.1:-3594137 | MS.gene54671:CDS |
| ATTGGAAGTTCACATTGTTC+AGG | 0.440877 | 6.1:+3596885 | None:intergenic |
| CGACAAAGTCGATGAAGATT+GGG | 0.448640 | 6.1:-3594676 | MS.gene54671:CDS |
| TCTTCTTTGCCTATTGTCAC+AGG | 0.458437 | 6.1:-3596775 | MS.gene54671:intron |
| TGTTTGGAGTGAGTTATTGT+TGG | 0.466124 | 6.1:-3594121 | MS.gene54671:CDS |
| CATCGACTTTGTCGAAATGA+AGG | 0.473877 | 6.1:+3594685 | None:intergenic |
| TATTGTTGGCTGTTCTTCAA+AGG | 0.475718 | 6.1:-3594107 | MS.gene54671:CDS |
| GAATTTAAGGAATGTTCAAA+TGG | 0.478101 | 6.1:-3594316 | MS.gene54671:CDS |
| TGCACTCATTGGTGTTTGCC+CGG | 0.481944 | 6.1:-3594153 | MS.gene54671:CDS |
| TGTTGACCAGGATGTCCATC+TGG | 0.485346 | 6.1:+3594210 | None:intergenic |
| AATTGCAAGGAATGTAGAAA+AGG | 0.491965 | 6.1:-3594468 | MS.gene54671:CDS |
| TTCTGTGGCTAGGAACCATA+TGG | 0.493544 | 6.1:-3596802 | MS.gene54671:CDS |
| TCTTGCCACGAACAATATTG+AGG | 0.495991 | 6.1:+3596844 | None:intergenic |
| GGCAAAGAAGAGAATCCATA+TGG | 0.505216 | 6.1:+3596787 | None:intergenic |
| ATTGTTGGCTGTTCTTCAAA+GGG | 0.509094 | 6.1:-3594106 | MS.gene54671:CDS |
| TCATTGGTGATTCTGTGGCT+AGG | 0.512931 | 6.1:-3596812 | MS.gene54671:CDS |
| AGATTAATGTACCTTCATCA+AGG | 0.520621 | 6.1:-3594597 | MS.gene54671:CDS |
| TGGACTATGCAATAGTTTCA+GGG | 0.521194 | 6.1:-3594635 | MS.gene54671:CDS |
| ATGGACATCCTGGTCAACAT+TGG | 0.528342 | 6.1:-3594206 | MS.gene54671:CDS |
| ATGAGACCAGATGGACATCC+TGG | 0.532452 | 6.1:-3594216 | MS.gene54671:CDS |
| GGCTTTCATTGGTGATTCTG+TGG | 0.543843 | 6.1:-3596817 | MS.gene54671:CDS |
| TGGGGAAATAAATGGATGAA+AGG | 0.545321 | 6.1:-3594186 | MS.gene54671:CDS |
| TTATTTCCCCAATGTTGACC+AGG | 0.549496 | 6.1:+3594198 | None:intergenic |
| ACTCCAAACATCAATAGCAC+CGG | 0.554543 | 6.1:+3594134 | None:intergenic |
| TTGGCTGTTCTTCAAAGGGA+AGG | 0.561018 | 6.1:-3594102 | MS.gene54671:CDS |
| ATTCCACCTTCAAAATGTGC+TGG | 0.565669 | 6.1:+3594414 | None:intergenic |
| GAATTACATAAATAATTGCA+AGG | 0.580029 | 6.1:-3594481 | MS.gene54671:CDS |
| TTTGCAGGAGGAAATTCCAA+AGG | 0.588767 | 6.1:-3594847 | MS.gene54671:intron |
| CTCCAAACATCAATAGCACC+GGG | 0.589750 | 6.1:+3594135 | None:intergenic |
| TTAGTGTAAAATCACTATCA+CGG | 0.618795 | 6.1:+3594526 | None:intergenic |
| GAAGGTGGAATATGGAACAC+TGG | 0.622199 | 6.1:-3594402 | MS.gene54671:CDS |
| GACTATGCAATAGTTTCAGG+GGG | 0.633521 | 6.1:-3594633 | MS.gene54671:CDS |
| GGACTATGCAATAGTTTCAG+GGG | 0.638454 | 6.1:-3594634 | MS.gene54671:CDS |
| GCTATGATGATGAGACCAGA+TGG | 0.640577 | 6.1:-3594225 | MS.gene54671:CDS |
| GTGGAATATGGAACACTGGA+GGG | 0.640830 | 6.1:-3594398 | MS.gene54671:CDS |
| AGGACAAGTCCTATAAACAA+AGG | 0.650197 | 6.1:-3594366 | MS.gene54671:CDS |
| GGACATCCTGGTCAACATTG+GGG | 0.656797 | 6.1:-3594204 | MS.gene54671:CDS |
| TGGAGCAGATTCCTAATCGT+AGG | 0.657904 | 6.1:-3594750 | MS.gene54671:CDS |
| TTAATGTACCTTCATCAAGG+TGG | 0.686114 | 6.1:-3594594 | MS.gene54671:CDS |
| GGTGGAATATGGAACACTGG+AGG | 0.687485 | 6.1:-3594399 | MS.gene54671:CDS |
| AATTCCAAAGGATATACACA+AGG | 0.710757 | 6.1:-3594835 | MS.gene54671:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTTATATTTAATTCAAT+AGG | - | chr6.1:3595669-3595688 | MS.gene54671:intron | 10.0% |
| !! | TTATATAGACTATTATTATT+AGG | + | chr6.1:3595624-3595643 | None:intergenic | 10.0% |
| !!! | ATAATCAATAAGTTTTTTTT+AGG | - | chr6.1:3595006-3595025 | MS.gene54671:intron | 10.0% |
| !!! | TTTTTCTAAATTTAATTGTT+TGG | - | chr6.1:3594639-3594658 | MS.gene54671:CDS | 10.0% |
| !! | TCTAAAAGAGATATAAAATA+TGG | + | chr6.1:3595514-3595533 | None:intergenic | 15.0% |
| !! | TTGATTTAAATAGATTTGAA+TGG | - | chr6.1:3596645-3596664 | MS.gene54671:intron | 15.0% |
| !!! | ATTTTATATCTCTTTTAGAA+TGG | - | chr6.1:3595515-3595534 | MS.gene54671:intron | 15.0% |
| !!! | ATTTTTTTTTTTTGAAAGGA+TGG | + | chr6.1:3595175-3595194 | None:intergenic | 15.0% |
| !!! | GTAATATAGACATTTTTTTT+TGG | - | chr6.1:3594287-3594306 | MS.gene54671:CDS | 15.0% |
| !!! | TATAACCTTTTAAAAACTAA+GGG | - | chr6.1:3595279-3595298 | MS.gene54671:intron | 15.0% |
| !!! | TTTTAAAAGGTTATACATTT+GGG | + | chr6.1:3595274-3595293 | None:intergenic | 15.0% |
| !!! | TTTTTAAAAGGTTATACATT+TGG | + | chr6.1:3595275-3595294 | None:intergenic | 15.0% |
| !!! | TTTTTCTTCTACATATAAAT+TGG | + | chr6.1:3595438-3595457 | None:intergenic | 15.0% |
| !! | AATTCTTTGCTTGAATATTA+AGG | - | chr6.1:3594326-3594345 | MS.gene54671:CDS | 20.0% |
| !! | ACAGAAAATTGATTATTATG+AGG | + | chr6.1:3595489-3595508 | None:intergenic | 20.0% |
| !! | ATAATAATAAAGGGAACATT+AGG | - | chr6.1:3596711-3596730 | MS.gene54671:intron | 20.0% |
| !! | ATAGATTTGAATGGAATTTA+AGG | - | chr6.1:3596654-3596673 | MS.gene54671:intron | 20.0% |
| !! | ATTCTTGTAAATAAAATTGG+AGG | - | chr6.1:3594357-3594376 | MS.gene54671:CDS | 20.0% |
| !! | ATTCTTTGCTTGAATATTAA+GGG | - | chr6.1:3594327-3594346 | MS.gene54671:CDS | 20.0% |
| !! | GAATTACATAAATAATTGCA+AGG | - | chr6.1:3596502-3596521 | MS.gene54671:intron | 20.0% |
| !! | GTGATTCTTGTAAATAAAAT+TGG | - | chr6.1:3594354-3594373 | MS.gene54671:CDS | 20.0% |
| !! | TAAAACCATTCTAATCAAAA+TGG | + | chr6.1:3595376-3595395 | None:intergenic | 20.0% |
| !! | TTATTAGAAAAGTTATCCAA+GGG | - | chr6.1:3595393-3595412 | MS.gene54671:intron | 20.0% |
| !! | TTTATTAGAAAAGTTATCCA+AGG | - | chr6.1:3595392-3595411 | MS.gene54671:intron | 20.0% |
| !!! | AAAATTTTAGGATCAAACAT+TGG | + | chr6.1:3594119-3594138 | None:intergenic | 20.0% |
| !!! | AATTTGTCTTATTCATGATT+TGG | + | chr6.1:3595339-3595358 | None:intergenic | 20.0% |
| !!! | ACAATATTGAGGAAAATTTT+AGG | + | chr6.1:3594131-3594150 | None:intergenic | 20.0% |
| !!! | CTCAGTTAAAATTCAAATTT+TGG | - | chr6.1:3595947-3595966 | MS.gene54671:intron | 20.0% |
| !!! | GTATAACCTTTTAAAAACTA+AGG | - | chr6.1:3595278-3595297 | MS.gene54671:intron | 20.0% |
| !!! | TTATGATTGACTTAACTTTA+TGG | + | chr6.1:3595751-3595770 | None:intergenic | 20.0% |
| ! | AAAGTCAAAAGCTAAAGTTT+GGG | - | chr6.1:3594582-3594601 | MS.gene54671:CDS | 25.0% |
| ! | ACAACTAATCATCCTATTAA+TGG | + | chr6.1:3594697-3594716 | None:intergenic | 25.0% |
| ! | ATTATTGCATTTAACCAATG+CGG | + | chr6.1:3596016-3596035 | None:intergenic | 25.0% |
| ! | CAACTAATCATCCTATTAAT+GGG | + | chr6.1:3594696-3594715 | None:intergenic | 25.0% |
| ! | CTTATTTGAGTATGACTATA+GGG | - | chr6.1:3595046-3595065 | MS.gene54671:intron | 25.0% |
| ! | GAAGAACTAAATTACAACTT+AGG | + | chr6.1:3594449-3594468 | None:intergenic | 25.0% |
| ! | GAATTTAAGGAATGTTCAAA+TGG | - | chr6.1:3596667-3596686 | MS.gene54671:intron | 25.0% |
| ! | TGGAGAAAATTAAGAATTCA+TGG | + | chr6.1:3595800-3595819 | None:intergenic | 25.0% |
| ! | TTAGTGTAAAATCACTATCA+CGG | + | chr6.1:3596460-3596479 | None:intergenic | 25.0% |
| ! | TTCTTTGCTTGAATATTAAG+GGG | - | chr6.1:3594328-3594347 | MS.gene54671:CDS | 25.0% |
| ! | TTTAGAAAAAGTCACTGAAT+CGG | + | chr6.1:3594629-3594648 | None:intergenic | 25.0% |
| !! | AAGATTTTCTCAATTGGAAA+TGG | - | chr6.1:3594072-3594091 | MS.gene54671:CDS | 25.0% |
| !! | AATTTCCTATGAAATTTTGC+AGG | - | chr6.1:3596121-3596140 | MS.gene54671:intron | 25.0% |
| !! | TTCTTCACATTTAGTTTCAT+TGG | - | chr6.1:3594463-3594482 | MS.gene54671:CDS | 25.0% |
| !!! | AAAAGTATTCTCCTTAAATG+AGG | - | chr6.1:3594532-3594551 | MS.gene54671:CDS | 25.0% |
| !!! | ACATTTTTTTTTGGCTTTTG+AGG | - | chr6.1:3594296-3594315 | MS.gene54671:CDS | 25.0% |
| !!! | ACTAGTCTTTTAAAATCTTG+TGG | - | chr6.1:3594779-3594798 | MS.gene54671:CDS | 25.0% |
| !!! | ATTTGAATTTTAACTGAGAG+AGG | + | chr6.1:3595945-3595964 | None:intergenic | 25.0% |
| !!! | CTAGTCTTTTAAAATCTTGT+GGG | - | chr6.1:3594780-3594799 | MS.gene54671:CDS | 25.0% |
| !!! | TAGAATGGTTTTATTCTGTT+TGG | - | chr6.1:3595530-3595549 | MS.gene54671:intron | 25.0% |
| !!! | TCAACTATAAGAAAGTACTA+AGG | + | chr6.1:3594406-3594425 | None:intergenic | 25.0% |
| AATGTTGTAGACATTGTTCT+TGG | - | chr6.1:3595865-3595884 | MS.gene54671:intron | 30.0% | |
| AATTCCAAAGGATATACACA+AGG | - | chr6.1:3596148-3596167 | MS.gene54671:intron | 30.0% | |
| AATTGCAAGGAATGTAGAAA+AGG | - | chr6.1:3596515-3596534 | MS.gene54671:intron | 30.0% | |
| ACTTCACTCTAATGATACTA+TGG | - | chr6.1:3596213-3596232 | MS.gene54671:intron | 30.0% | |
| AGACAAATTAGAGATAGCAT+AGG | - | chr6.1:3595350-3595369 | MS.gene54671:intron | 30.0% | |
| AGATTAATGTACCTTCATCA+AGG | - | chr6.1:3596386-3596405 | MS.gene54671:intron | 30.0% | |
| ATTAGAGTGAAGTCATACTT+TGG | + | chr6.1:3596206-3596225 | None:intergenic | 30.0% | |
| ATTGTAAATGGAACAGATAC+AGG | - | chr6.1:3596266-3596285 | MS.gene54671:intron | 30.0% | |
| CAAAGTCAAAAGCTAAAGTT+TGG | - | chr6.1:3594581-3594600 | MS.gene54671:CDS | 30.0% | |
| CTAAAATAACGCCTCATTTA+AGG | + | chr6.1:3594546-3594565 | None:intergenic | 30.0% | |
| GCTTATTTGAGTATGACTAT+AGG | - | chr6.1:3595045-3595064 | MS.gene54671:intron | 30.0% | |
| GGTGAAGAAAGAATTGTAAA+TGG | - | chr6.1:3596254-3596273 | MS.gene54671:intron | 30.0% | |
| GTTATAATGATTGCACTCAT+TGG | - | chr6.1:3596819-3596838 | MS.gene54671:CDS | 30.0% | |
| TTAGAGTGAAGTCATACTTT+GGG | + | chr6.1:3596205-3596224 | None:intergenic | 30.0% | |
| ! | AGGATGATTAGTTGTCAAAA+GGG | - | chr6.1:3594702-3594721 | MS.gene54671:CDS | 30.0% |
| ! | ATTTTCCTCAATATTGTTCG+TGG | - | chr6.1:3594134-3594153 | MS.gene54671:CDS | 30.0% |
| ! | TAGGATGATTAGTTGTCAAA+AGG | - | chr6.1:3594701-3594720 | MS.gene54671:CDS | 30.0% |
| ! | TCAACTTCACCTTTGTTTAT+AGG | + | chr6.1:3596629-3596648 | None:intergenic | 30.0% |
| ! | TGGACAAAGATTTTCTCAAT+TGG | - | chr6.1:3594066-3594085 | MS.gene54671:CDS | 30.0% |
| !! | ATTTTTGTTTGTGTCCAAAC+AGG | - | chr6.1:3594726-3594745 | MS.gene54671:CDS | 30.0% |
| !! | GAACATTAGGTTTGAGATTT+TGG | - | chr6.1:3596724-3596743 | MS.gene54671:intron | 30.0% |
| !! | GTGATAGTGATTTTACACTA+AGG | - | chr6.1:3596459-3596478 | MS.gene54671:intron | 30.0% |
| !! | TGTGTCCCTTAGTTTTTAAA+AGG | + | chr6.1:3595287-3595306 | None:intergenic | 30.0% |
| !!! | ATAGGCCATTTTGATTAGAA+TGG | - | chr6.1:3595368-3595387 | MS.gene54671:intron | 30.0% |
| AAAGCTAACTGTAGACTTGA+AGG | + | chr6.1:3595597-3595616 | None:intergenic | 35.0% | |
| ACAAACTAACCTGTGACAAT+AGG | + | chr6.1:3594220-3594239 | None:intergenic | 35.0% | |
| ACAAGTTTATTCAAGTCCCT+TGG | + | chr6.1:3595412-3595431 | None:intergenic | 35.0% | |
| ACTATTGCATAGTCCAATTC+AGG | + | chr6.1:3596344-3596363 | None:intergenic | 35.0% | |
| AGGACAAGTCCTATAAACAA+AGG | - | chr6.1:3596617-3596636 | MS.gene54671:intron | 35.0% | |
| ATTGGAAGTTCACATTGTTC+AGG | + | chr6.1:3594101-3594120 | None:intergenic | 35.0% | |
| CAATCATGATGCCTAAACAT+GGG | + | chr6.1:3595703-3595722 | None:intergenic | 35.0% | |
| CATCAAGGTGGAAAATTACT+AGG | - | chr6.1:3596401-3596420 | MS.gene54671:intron | 35.0% | |
| CGACTAAGTAATCACATTTG+AGG | - | chr6.1:3595894-3595913 | MS.gene54671:intron | 35.0% | |
| GACCCATTAAAAGAGTTTGT+CGG | + | chr6.1:3594864-3594883 | None:intergenic | 35.0% | |
| GGCTAAAGTAATACCTGAAT+TGG | - | chr6.1:3596328-3596347 | MS.gene54671:intron | 35.0% | |
| GTCAACATTGGGGAAATAAA+TGG | - | chr6.1:3596789-3596808 | MS.gene54671:CDS | 35.0% | |
| TATTGTTCGTGGCAAGAAAA+TGG | - | chr6.1:3594145-3594164 | MS.gene54671:CDS | 35.0% | |
| TCAATCATGATGCCTAAACA+TGG | + | chr6.1:3595704-3595723 | None:intergenic | 35.0% | |
| TGGACTATGCAATAGTTTCA+GGG | - | chr6.1:3596348-3596367 | MS.gene54671:intron | 35.0% | |
| TGGGGAAATAAATGGATGAA+AGG | - | chr6.1:3596797-3596816 | MS.gene54671:CDS | 35.0% | |
| TTAATGTACCTTCATCAAGG+TGG | - | chr6.1:3596389-3596408 | MS.gene54671:intron | 35.0% | |
| TTCCTCCTGCAAAATTTCAT+AGG | + | chr6.1:3596129-3596148 | None:intergenic | 35.0% | |
| TTCTTTCTTCACCTACGATT+AGG | + | chr6.1:3596247-3596266 | None:intergenic | 35.0% | |
| TTGGACTATGCAATAGTTTC+AGG | - | chr6.1:3596347-3596366 | MS.gene54671:intron | 35.0% | |
| TTGTACTCTCACCCATTAAT+AGG | - | chr6.1:3594682-3594701 | MS.gene54671:CDS | 35.0% | |
| ! | ATTGTTGGCTGTTCTTCAAA+GGG | - | chr6.1:3596877-3596896 | MS.gene54671:CDS | 35.0% |
| ! | GACCGACAAACTCTTTTAAT+GGG | - | chr6.1:3594859-3594878 | MS.gene54671:intron | 35.0% |
| ! | GTAATTTTCCACCTTGATGA+AGG | + | chr6.1:3596400-3596419 | None:intergenic | 35.0% |
| ! | TATTGTTGGCTGTTCTTCAA+AGG | - | chr6.1:3596876-3596895 | MS.gene54671:CDS | 35.0% |
| ! | TGACCGACAAACTCTTTTAA+TGG | - | chr6.1:3594858-3594877 | MS.gene54671:intron | 35.0% |
| ! | TGTTTGGAGTGAGTTATTGT+TGG | - | chr6.1:3596862-3596881 | MS.gene54671:CDS | 35.0% |
| ! | TTCCTATGAAATTTTGCAGG+AGG | - | chr6.1:3596124-3596143 | MS.gene54671:intron | 35.0% |
| !! | CAAGAGATGATGATGAGTTT+TGG | - | chr6.1:3596908-3596927 | MS.gene54671:CDS | 35.0% |
| !! | CACATTTTGAAGGTGGAATA+TGG | - | chr6.1:3596573-3596592 | MS.gene54671:intron | 35.0% |
| AAAGTTTGGGCAGAGAGTAA+GGG | - | chr6.1:3594595-3594614 | MS.gene54671:CDS | 40.0% | |
| AAGTCATCTTGTCGGTCATT+TGG | + | chr6.1:3594808-3594827 | None:intergenic | 40.0% | |
| AATGACCGACAAGATGACTT+TGG | - | chr6.1:3594808-3594827 | MS.gene54671:CDS | 40.0% | |
| ACTCCAAACATCAATAGCAC+CGG | + | chr6.1:3596852-3596871 | None:intergenic | 40.0% | |
| ACTTGGCATGAGGAGAAAAA+TGG | + | chr6.1:3595820-3595839 | None:intergenic | 40.0% | |
| AGGTCAACAATCCCATGTTT+AGG | - | chr6.1:3595689-3595708 | MS.gene54671:intron | 40.0% | |
| AGTCATCTTGTCGGTCATTT+GGG | + | chr6.1:3594807-3594826 | None:intergenic | 40.0% | |
| ATTCCACCTTCAAAATGTGC+TGG | + | chr6.1:3596572-3596591 | None:intergenic | 40.0% | |
| CGACAAAGTCGATGAAGATT+GGG | - | chr6.1:3596307-3596326 | MS.gene54671:intron | 40.0% | |
| CGTGTAGAGAATAACCTGTT+TGG | + | chr6.1:3594743-3594762 | None:intergenic | 40.0% | |
| GACTATGCAATAGTTTCAGG+GGG | - | chr6.1:3596350-3596369 | MS.gene54671:intron | 40.0% | |
| GAGTCCTTGTGTATATCCTT+TGG | + | chr6.1:3596155-3596174 | None:intergenic | 40.0% | |
| GGACTATGCAATAGTTTCAG+GGG | - | chr6.1:3596349-3596368 | MS.gene54671:intron | 40.0% | |
| GGCAAAGAAGAGAATCCATA+TGG | + | chr6.1:3594199-3594218 | None:intergenic | 40.0% | |
| GGCAAGAAAATGGCTTTCAT+TGG | - | chr6.1:3594155-3594174 | MS.gene54671:CDS | 40.0% | |
| GTCTATTTGCGAGATTGTAG+AGG | - | chr6.1:3594881-3594900 | MS.gene54671:intron | 40.0% | |
| TAAAGTTTGGGCAGAGAGTA+AGG | - | chr6.1:3594594-3594613 | MS.gene54671:CDS | 40.0% | |
| TCACTCCAAAGTCATCTTGT+CGG | + | chr6.1:3594816-3594835 | None:intergenic | 40.0% | |
| TCGACAAAGTCGATGAAGAT+TGG | - | chr6.1:3596306-3596325 | MS.gene54671:intron | 40.0% | |
| TCTTCTTTGCCTATTGTCAC+AGG | - | chr6.1:3594208-3594227 | MS.gene54671:CDS | 40.0% | |
| TCTTGCCACGAACAATATTG+AGG | + | chr6.1:3594142-3594161 | None:intergenic | 40.0% | |
| TGTAGAGGATACGATGACTT+TGG | - | chr6.1:3594896-3594915 | MS.gene54671:intron | 40.0% | |
| TGTCACGTGGGACAAAATTT+GGG | - | chr6.1:3595839-3595858 | MS.gene54671:intron | 40.0% | |
| TTATTTCCCCAATGTTGACC+AGG | + | chr6.1:3596788-3596807 | None:intergenic | 40.0% | |
| TTTGCAGGAGGAAATTCCAA+AGG | - | chr6.1:3596136-3596155 | MS.gene54671:intron | 40.0% | |
| ! | TTTGCACCAGCACATTTTGA+AGG | - | chr6.1:3596563-3596582 | MS.gene54671:intron | 40.0% |
| !! | ACAAGATGACTTTGGAGTGA+GGG | - | chr6.1:3594816-3594835 | MS.gene54671:CDS | 40.0% |
| !! | ACACTGGAGGGTATTGTAAT+AGG | - | chr6.1:3596597-3596616 | MS.gene54671:intron | 40.0% |
| !! | CATCGACTTTGTCGAAATGA+AGG | + | chr6.1:3596301-3596320 | None:intergenic | 40.0% |
| !! | GAAAGTACTAAGGCATCATG+TGG | + | chr6.1:3594396-3594415 | None:intergenic | 40.0% |
| AGAGGATACGATGACTTTGG+AGG | - | chr6.1:3594899-3594918 | MS.gene54671:intron | 45.0% | |
| ATGGACATCCTGGTCAACAT+TGG | - | chr6.1:3596777-3596796 | MS.gene54671:CDS | 45.0% | |
| CAATAGTTTCAGGGGGACAT+TGG | - | chr6.1:3596357-3596376 | MS.gene54671:intron | 45.0% | |
| CGGATTCAGTCTAACAGAAG+GGG | + | chr6.1:3595996-3596015 | None:intergenic | 45.0% | |
| CTCCAAACATCAATAGCACC+GGG | + | chr6.1:3596851-3596870 | None:intergenic | 45.0% | |
| CTGTTAGACTGAATCCGCAT+TGG | - | chr6.1:3595999-3596018 | MS.gene54671:intron | 45.0% | |
| GAAGGTGGAATATGGAACAC+TGG | - | chr6.1:3596581-3596600 | MS.gene54671:intron | 45.0% | |
| GCGGATTCAGTCTAACAGAA+GGG | + | chr6.1:3595997-3596016 | None:intergenic | 45.0% | |
| GTGGAATATGGAACACTGGA+GGG | - | chr6.1:3596585-3596604 | MS.gene54671:intron | 45.0% | |
| GTGTCACGTGGGACAAAATT+TGG | - | chr6.1:3595838-3595857 | MS.gene54671:intron | 45.0% | |
| TGCGGATTCAGTCTAACAGA+AGG | + | chr6.1:3595998-3596017 | None:intergenic | 45.0% | |
| TGGACATCCTGGTCAACATT+GGG | - | chr6.1:3596778-3596797 | MS.gene54671:CDS | 45.0% | |
| TGGAGCAGATTCCTAATCGT+AGG | - | chr6.1:3596233-3596252 | MS.gene54671:intron | 45.0% | |
| TTCTGTGGCTAGGAACCATA+TGG | - | chr6.1:3594181-3594200 | MS.gene54671:CDS | 45.0% | |
| TTGGCTGTTCTTCAAAGGGA+AGG | - | chr6.1:3596881-3596900 | MS.gene54671:CDS | 45.0% | |
| ! | ACTTTGGAGGAAGAGGATCA+AGG | - | chr6.1:3594912-3594931 | MS.gene54671:intron | 45.0% |
| ! | ATTTTGTCCCACGTGACACT+TGG | + | chr6.1:3595837-3595856 | None:intergenic | 45.0% |
| ! | CTTTGGAGGAAGAGGATCAA+GGG | - | chr6.1:3594913-3594932 | MS.gene54671:intron | 45.0% |
| ! | GCTATGATGATGAGACCAGA+TGG | - | chr6.1:3596758-3596777 | MS.gene54671:intron | 45.0% |
| ! | GGCTTTCATTGGTGATTCTG+TGG | - | chr6.1:3594166-3594185 | MS.gene54671:CDS | 45.0% |
| ! | TACGATGACTTTGGAGGAAG+AGG | - | chr6.1:3594905-3594924 | MS.gene54671:intron | 45.0% |
| ! | TCATTGGTGATTCTGTGGCT+AGG | - | chr6.1:3594171-3594190 | MS.gene54671:CDS | 45.0% |
| ! | TTGGAGTGAGGGGATTCTTT+TGG | - | chr6.1:3594827-3594846 | MS.gene54671:CDS | 45.0% |
| !! | CAAGATGACTTTGGAGTGAG+GGG | - | chr6.1:3594817-3594836 | MS.gene54671:CDS | 45.0% |
| !! | CTCTACACGAAAGAGTGTTG+TGG | - | chr6.1:3594754-3594773 | MS.gene54671:CDS | 45.0% |
| !! | GACAAGATGACTTTGGAGTG+AGG | - | chr6.1:3594815-3594834 | MS.gene54671:CDS | 45.0% |
| !! | AAAGTTAAAAATAATAATAA+AGG | - | chr6.1:3596701-3596720 | MS.gene54671:intron | 5.0% |
| !! | AAGTTAAAAATAATAATAAA+GGG | - | chr6.1:3596702-3596721 | MS.gene54671:intron | 5.0% |
| !!! | TTTTATTTTTTTTTTTTGAA+AGG | + | chr6.1:3595179-3595198 | None:intergenic | 5.0% |
| ATGAGACCAGATGGACATCC+TGG | - | chr6.1:3596767-3596786 | MS.gene54671:intron | 50.0% | |
| GGACATCCTGGTCAACATTG+GGG | - | chr6.1:3596779-3596798 | MS.gene54671:CDS | 50.0% | |
| GGGGCTAGACTCTCACAATA+TGG | + | chr6.1:3595977-3595996 | None:intergenic | 50.0% | |
| GGTGGAATATGGAACACTGG+AGG | - | chr6.1:3596584-3596603 | MS.gene54671:intron | 50.0% | |
| TGTTGACCAGGATGTCCATC+TGG | + | chr6.1:3596776-3596795 | None:intergenic | 50.0% | |
| ! | TGCACTCATTGGTGTTTGCC+CGG | - | chr6.1:3596830-3596849 | MS.gene54671:CDS | 50.0% |
| !! | GCACCAGCACATTTTGAAGG+TGG | - | chr6.1:3596566-3596585 | MS.gene54671:intron | 50.0% |
| !! | TGCCCGGTGCTATTGATGTT+TGG | - | chr6.1:3596846-3596865 | MS.gene54671:CDS | 50.0% |
| CCTCATGCCAAGTGTCACGT+GGG | - | chr6.1:3595827-3595846 | MS.gene54671:intron | 55.0% | |
| TCCTCATGCCAAGTGTCACG+TGG | - | chr6.1:3595826-3595845 | MS.gene54671:intron | 55.0% | |
| CCCACGTGACACTTGGCATG+AGG | + | chr6.1:3595830-3595849 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3594065 | 3596940 | 3594065 | ID=MS.gene54671 |
| chr6.1 | mRNA | 3594065 | 3596940 | 3594065 | ID=MS.gene54671.t1;Parent=MS.gene54671 |
| chr6.1 | exon | 3596776 | 3596940 | 3596776 | ID=MS.gene54671.t1.exon1;Parent=MS.gene54671.t1 |
| chr6.1 | CDS | 3596776 | 3596940 | 3596776 | ID=cds.MS.gene54671.t1;Parent=MS.gene54671.t1 |
| chr6.1 | exon | 3594065 | 3594862 | 3594065 | ID=MS.gene54671.t1.exon2;Parent=MS.gene54671.t1 |
| chr6.1 | CDS | 3594065 | 3594862 | 3594065 | ID=cds.MS.gene54671.t1;Parent=MS.gene54671.t1 |
| Gene Sequence |
| Protein sequence |
