Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54703.t1 | XP_003618323.2 | 84.4 | 578 | 86 | 2 | 1 | 575 | 1 | 577 | 4.50E-275 | 956.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54703.t1 | Q4F883 | 37.4 | 580 | 286 | 16 | 2 | 558 | 1 | 526 | 6.7e-86 | 319.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54703.t1 | G7KIV1 | 84.4 | 578 | 86 | 2 | 1 | 575 | 1 | 577 | 3.2e-275 | 956.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049409 | MS.gene54703 | 0.830048 | 3.66E-55 | -1.69E-46 |
| MS.gene049567 | MS.gene54703 | 0.800012 | 1.76E-48 | -1.69E-46 |
| MS.gene049958 | MS.gene54703 | 0.82948 | 5.03E-55 | -1.69E-46 |
| MS.gene050645 | MS.gene54703 | 0.845737 | 3.37E-59 | -1.69E-46 |
| MS.gene050669 | MS.gene54703 | 0.82407 | 9.85E-54 | -1.69E-46 |
| MS.gene051279 | MS.gene54703 | 0.804444 | 2.15E-49 | -1.69E-46 |
| MS.gene052685 | MS.gene54703 | 0.806771 | 7.00E-50 | -1.69E-46 |
| MS.gene052768 | MS.gene54703 | 0.807244 | 5.56E-50 | -1.69E-46 |
| MS.gene053647 | MS.gene54703 | 0.807467 | 4.98E-50 | -1.69E-46 |
| MS.gene05414 | MS.gene54703 | 0.805117 | 1.56E-49 | -1.69E-46 |
| MS.gene05439 | MS.gene54703 | 0.817259 | 3.62E-52 | -1.69E-46 |
| MS.gene054576 | MS.gene54703 | 0.807597 | 4.68E-50 | -1.69E-46 |
| MS.gene054892 | MS.gene54703 | 0.852734 | 3.80E-61 | -1.69E-46 |
| MS.gene054893 | MS.gene54703 | 0.843238 | 1.58E-58 | -1.69E-46 |
| MS.gene057012 | MS.gene54703 | 0.811573 | 6.54E-51 | -1.69E-46 |
| MS.gene059774 | MS.gene54703 | 0.802542 | 5.34E-49 | -1.69E-46 |
| MS.gene061047 | MS.gene54703 | 0.827257 | 1.73E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54703.t1 | MTR_6g007980 | 84.256 | 578 | 86 | 3 | 1 | 575 | 1 | 576 | 0.0 | 965 |
| MS.gene54703.t1 | MTR_6g007980 | 84.429 | 578 | 86 | 2 | 1 | 575 | 1 | 577 | 0.0 | 960 |
| MS.gene54703.t1 | MTR_6g007980 | 84.283 | 579 | 86 | 3 | 1 | 575 | 1 | 578 | 0.0 | 955 |
| MS.gene54703.t1 | MTR_3g467360 | 55.137 | 584 | 242 | 9 | 1 | 574 | 1 | 574 | 0.0 | 629 |
| MS.gene54703.t1 | MTR_6g007975 | 57.534 | 584 | 220 | 15 | 5 | 574 | 7 | 576 | 0.0 | 624 |
| MS.gene54703.t1 | MTR_3g467360 | 55.017 | 578 | 240 | 9 | 7 | 574 | 13 | 580 | 0.0 | 620 |
| MS.gene54703.t1 | MTR_6g008015 | 55.000 | 580 | 235 | 11 | 5 | 570 | 7 | 574 | 0.0 | 614 |
| MS.gene54703.t1 | MTR_6g008055 | 56.537 | 589 | 226 | 15 | 1 | 574 | 1 | 574 | 0.0 | 602 |
| MS.gene54703.t1 | MTR_6g007985 | 52.842 | 475 | 202 | 8 | 108 | 570 | 33 | 497 | 4.24e-173 | 500 |
| MS.gene54703.t1 | MTR_0286s0040 | 48.132 | 455 | 146 | 12 | 130 | 574 | 12 | 386 | 3.59e-129 | 384 |
| MS.gene54703.t1 | MTR_3g467350 | 47.445 | 411 | 180 | 8 | 1 | 400 | 1 | 386 | 1.24e-110 | 339 |
| MS.gene54703.t1 | MTR_0286s0050 | 59.350 | 123 | 43 | 4 | 5 | 123 | 7 | 126 | 1.76e-33 | 125 |
| MS.gene54703.t1 | MTR_8g494200 | 26.197 | 355 | 225 | 12 | 211 | 545 | 274 | 611 | 1.25e-21 | 99.4 |
| MS.gene54703.t1 | MTR_3g078633 | 23.889 | 360 | 208 | 12 | 209 | 538 | 276 | 599 | 3.16e-15 | 79.3 |
| MS.gene54703.t1 | MTR_3g078633 | 23.889 | 360 | 208 | 12 | 209 | 538 | 204 | 527 | 6.60e-15 | 78.2 |
| MS.gene54703.t1 | MTR_1g023450 | 73.810 | 42 | 11 | 0 | 378 | 419 | 18 | 59 | 1.48e-13 | 65.9 |
| MS.gene54703.t1 | MTR_3g079340 | 23.667 | 300 | 175 | 10 | 209 | 482 | 277 | 548 | 2.59e-11 | 67.0 |
| MS.gene54703.t1 | MTR_0095s0020 | 45.745 | 94 | 45 | 4 | 121 | 209 | 148 | 240 | 7.48e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene54703.t1 | AT5G14930 | 37.955 | 577 | 280 | 17 | 10 | 563 | 9 | 530 | 4.77e-105 | 327 |
| MS.gene54703.t1 | AT5G14930 | 38.525 | 244 | 121 | 6 | 10 | 237 | 9 | 239 | 1.66e-37 | 139 |
| MS.gene54703.t1 | AT3G52430 | 27.635 | 427 | 280 | 11 | 130 | 545 | 112 | 520 | 4.99e-36 | 142 |
Find 95 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAATTTGAGAATTATGTTTA+TGG | 0.212060 | 6.1:+3969904 | MS.gene54703:CDS |
| CATGACCAAAGTCAGGATTT+TGG | 0.216947 | 6.1:+3968594 | MS.gene54703:CDS |
| TAACTCTAGATTCTTGCTTT+TGG | 0.226739 | 6.1:+3969788 | MS.gene54703:CDS |
| ATTGAATTCAATTTCCTTGA+TGG | 0.240277 | 6.1:-3969367 | None:intergenic |
| TGAAAATATTGGATTGCTTT+TGG | 0.264679 | 6.1:-3967608 | None:intergenic |
| GCAACATTTGTGACAAGTTC+TGG | 0.274364 | 6.1:+3967367 | MS.gene54703:CDS |
| GAGTCAATATAAGAAAATTA+AGG | 0.283637 | 6.1:+3969993 | MS.gene54703:CDS |
| CTGGTCTTCTTCGAAAATTA+TGG | 0.301057 | 6.1:+3967386 | MS.gene54703:CDS |
| TTCACTTTATTACTATTAGA+TGG | 0.321607 | 6.1:+3968300 | MS.gene54703:CDS |
| TGTCAATCTTCAATCTGAAT+TGG | 0.323046 | 6.1:+3967531 | MS.gene54703:CDS |
| GGATGAGGCAACAAGAAAAT+TGG | 0.331734 | 6.1:+3969879 | MS.gene54703:CDS |
| TCCCCTAAGTTGATAATTAC+TGG | 0.346310 | 6.1:+3968246 | MS.gene54703:CDS |
| TCTACGGTGGAACAACTTAT+AGG | 0.346860 | 6.1:+3969599 | MS.gene54703:CDS |
| CCATATCACACAGTTCTTCA+TGG | 0.348942 | 6.1:+3968400 | MS.gene54703:CDS |
| AAACCTCTTTGCATCACCTT+TGG | 0.355006 | 6.1:+3968342 | MS.gene54703:CDS |
| GAATTCAATGAAGATAGATT+TGG | 0.365121 | 6.1:+3969381 | MS.gene54703:CDS |
| TTGCAAGGACACCGCAAATC+AGG | 0.381433 | 6.1:+3968665 | MS.gene54703:CDS |
| AGTCCAGTAATTATCAACTT+AGG | 0.381788 | 6.1:-3968249 | None:intergenic |
| AATATGTTGGAGGAACTTAT+AGG | 0.385930 | 6.1:+3970076 | MS.gene54703:CDS |
| GTCCAGTAATTATCAACTTA+GGG | 0.386336 | 6.1:-3968248 | None:intergenic |
| ATAATTACTGGACTTGCTCT+TGG | 0.394848 | 6.1:+3968258 | MS.gene54703:CDS |
| CCATGAAGAACTGTGTGATA+TGG | 0.402623 | 6.1:-3968400 | None:intergenic |
| GTAATGTTAAGTGAAAATAT+TGG | 0.404625 | 6.1:-3967619 | None:intergenic |
| TGGACCAAGACGCAGTTCTA+TGG | 0.405092 | 6.1:+3969485 | MS.gene54703:CDS |
| AGAACTGCTAAAACAGAATC+AGG | 0.410566 | 6.1:-3968558 | None:intergenic |
| TAGATTTGGCTAACTTTGAA+TGG | 0.418573 | 6.1:+3969395 | MS.gene54703:CDS |
| CATTACTTTGGTAGAAAAGA+TGG | 0.421049 | 6.1:+3969306 | MS.gene54703:CDS |
| AGTAGTTCTTACGTGCCCTT+TGG | 0.431074 | 6.1:+3968489 | MS.gene54703:CDS |
| TAGATTTAGCAGTGGAATAG+AGG | 0.436219 | 6.1:+3967342 | MS.gene54703:intron |
| ATCTAGTCACTACAAACAAT+TGG | 0.438035 | 6.1:+3969693 | MS.gene54703:CDS |
| AATTCACATACAGTTGAGAT+TGG | 0.441085 | 6.1:-3966760 | None:intergenic |
| ACCTTTGGTTCTCCACTAGT+TGG | 0.448784 | 6.1:+3968357 | MS.gene54703:CDS |
| AAAATTTCATCAACCAGAAA+AGG | 0.455883 | 6.1:+3969332 | MS.gene54703:CDS |
| TAGTGAATCAGAATAATTCA+TGG | 0.460243 | 6.1:-3968694 | None:intergenic |
| CCTTAGTGAAAGTAGCTACA+TGG | 0.465698 | 6.1:+3969963 | MS.gene54703:CDS |
| AGTCAATATAAGAAAATTAA+GGG | 0.468515 | 6.1:+3969994 | MS.gene54703:CDS |
| TAGTATTGAGCTATATCTAA+TGG | 0.471025 | 6.1:-3969634 | None:intergenic |
| GGAAATTGACATCATTACTT+TGG | 0.473837 | 6.1:+3969294 | MS.gene54703:CDS |
| CTTCGTACTCGTTGGCTCTA+CGG | 0.476860 | 6.1:+3969583 | MS.gene54703:CDS |
| CAAAATCCTGACTTTGGTCA+TGG | 0.483292 | 6.1:-3968593 | None:intergenic |
| AATTATAATGTAGAATATGT+TGG | 0.484908 | 6.1:+3970063 | MS.gene54703:CDS |
| CAAGATAATGAACTTAAGAA+TGG | 0.487094 | 6.1:+3969465 | MS.gene54703:CDS |
| AAAATCTAGTGCCATTGAAA+AGG | 0.491778 | 6.1:+3969858 | MS.gene54703:CDS |
| TTATTTGAACCAGTTGTTGC+TGG | 0.492187 | 6.1:-3969736 | None:intergenic |
| GTAGAAGCACCAGCAACAAC+TGG | 0.493229 | 6.1:+3969727 | MS.gene54703:CDS |
| TAGAACCAAAATCCTGACTT+TGG | 0.493768 | 6.1:-3968599 | None:intergenic |
| GAATTATTCTGATTCACTAC+AGG | 0.496451 | 6.1:+3968698 | MS.gene54703:CDS |
| GACATTGTTTCAAATGTTGT+TGG | 0.497217 | 6.1:+3967424 | MS.gene54703:CDS |
| ATCAATCCATGACCAAAGTC+AGG | 0.497775 | 6.1:+3968587 | MS.gene54703:CDS |
| GTGATGAACTTCCTTGGAAG+TGG | 0.499701 | 6.1:-3968459 | None:intergenic |
| TGATCTGTGATGAACTTCCT+TGG | 0.502183 | 6.1:-3968465 | None:intergenic |
| ACTACAAACAATTGGAGGAT+TGG | 0.502313 | 6.1:+3969701 | MS.gene54703:CDS |
| AGCGACGCGCCTTCTTTCTG+AGG | 0.504188 | 6.1:-3969562 | None:intergenic |
| ATTACTGGACTTGCTCTTGG+AGG | 0.504250 | 6.1:+3968261 | MS.gene54703:CDS |
| TTCGCCATAGAACTGCGTCT+TGG | 0.514149 | 6.1:-3969489 | None:intergenic |
| CATGGCTTGAACCTGATTTG+CGG | 0.518067 | 6.1:-3968676 | None:intergenic |
| TTGGTAACAATGGACTATCA+TGG | 0.521505 | 6.1:+3967443 | MS.gene54703:CDS |
| TTAATGAAGCCTCAGAAAGA+AGG | 0.529368 | 6.1:+3969553 | MS.gene54703:CDS |
| CCTTGCAAATTGCTTTGCGA+TGG | 0.530888 | 6.1:-3968650 | None:intergenic |
| CACACGAGAAATGTTCCAAA+GGG | 0.535322 | 6.1:-3968504 | None:intergenic |
| ATGTATCGGCTTGCAATTGT+CGG | 0.536316 | 6.1:+3968722 | MS.gene54703:CDS |
| TATTAAGCTACCTGCATATG+TGG | 0.538958 | 6.1:-3968759 | None:intergenic |
| TCAAATGTTGTTGGTAACAA+TGG | 0.541619 | 6.1:+3967433 | MS.gene54703:CDS |
| GATTCACTACAGGCATGTAT+CGG | 0.544641 | 6.1:+3968708 | MS.gene54703:CDS |
| ATAGCTCAATACTATCTCAA+TGG | 0.546562 | 6.1:+3969643 | MS.gene54703:CDS |
| AGGATTGTCACCACATATGC+AGG | 0.547109 | 6.1:+3968749 | MS.gene54703:CDS |
| GCGCGTCGCTTCGTACTCGT+TGG | 0.549562 | 6.1:+3969575 | MS.gene54703:CDS |
| CCATGTAGCTACTTTCACTA+AGG | 0.550704 | 6.1:-3969963 | None:intergenic |
| GGAAACAATATGATCCATCA+AGG | 0.561154 | 6.1:+3969353 | MS.gene54703:CDS |
| TGGAACAACTTATAGGAGAA+TGG | 0.561486 | 6.1:+3969606 | MS.gene54703:CDS |
| TAATGTTACTAGAGAGAATG+TGG | 0.567305 | 6.1:+3969756 | MS.gene54703:CDS |
| TAGTCACTACAAACAATTGG+AGG | 0.569273 | 6.1:+3969696 | MS.gene54703:CDS |
| TTATGTTTATGGATTGCTCA+AGG | 0.573143 | 6.1:+3969915 | MS.gene54703:CDS |
| CTTGCAATGATCCACTTCCA+AGG | 0.574325 | 6.1:+3968448 | MS.gene54703:CDS |
| TCTCCACTAGTTGGTGACAA+AGG | 0.579237 | 6.1:+3968366 | MS.gene54703:CDS |
| CTTTCACTAAGGAAAACCTC+TGG | 0.582421 | 6.1:-3969952 | None:intergenic |
| GGTTTCATCTACTAAACTCA+AGG | 0.587817 | 6.1:+3967552 | MS.gene54703:CDS |
| TATAATGTAGAATATGTTGG+AGG | 0.588355 | 6.1:+3970066 | MS.gene54703:CDS |
| TAGTGCCATTGAAAAGGATG+AGG | 0.591463 | 6.1:+3969864 | MS.gene54703:CDS |
| GGCTTGCAATTGTCGGCACT+AGG | 0.597679 | 6.1:+3968729 | MS.gene54703:CDS |
| GTGAAAGTAGCTACATGGCA+TGG | 0.601444 | 6.1:+3969968 | MS.gene54703:CDS |
| TATGGTTATAGATTTAGCAG+TGG | 0.604929 | 6.1:+3967334 | MS.gene54703:intron |
| ACCAACTAGTGGAGAACCAA+AGG | 0.608258 | 6.1:-3968358 | None:intergenic |
| AATCCTTTGTCACCAACTAG+TGG | 0.611681 | 6.1:-3968369 | None:intergenic |
| CGTACTCGTTGGCTCTACGG+TGG | 0.616602 | 6.1:+3969586 | MS.gene54703:CDS |
| ACACACGAGAAATGTTCCAA+AGG | 0.637156 | 6.1:-3968505 | None:intergenic |
| TCCAGTAATTATCAACTTAG+GGG | 0.638938 | 6.1:-3968247 | None:intergenic |
| GCTTGATCAATTGAAGTCTG+AGG | 0.639656 | 6.1:+3967675 | MS.gene54703:CDS |
| GAACCAAAGGTGATGCAAAG+AGG | 0.640380 | 6.1:-3968345 | None:intergenic |
| GCTCAATACTATCTCAATGG+TGG | 0.644081 | 6.1:+3969646 | MS.gene54703:CDS |
| CCATCGCAAAGCAATTTGCA+AGG | 0.644458 | 6.1:+3968650 | MS.gene54703:CDS |
| TGAAGATTGACAGAATTCGA+CGG | 0.653322 | 6.1:-3967520 | None:intergenic |
| GGAATATGCAGTGTCACCAG+AGG | 0.681312 | 6.1:+3969936 | MS.gene54703:CDS |
| AAAGTAGCTACATGGCATGG+TGG | 0.693626 | 6.1:+3969971 | MS.gene54703:CDS |
| ATTGACAGAATTCGACGGTG+CGG | 0.733423 | 6.1:-3967515 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTAAACAATACTTTAAAAT+CGG | - | chr6.1:3967208-3967227 | None:intergenic | 10.0% |
| !! | AATTATAATGTAGAATATGT+TGG | + | chr6.1:3970063-3970082 | MS.gene54703:CDS | 15.0% |
| !! | AGTCAATATAAGAAAATTAA+GGG | + | chr6.1:3969994-3970013 | MS.gene54703:CDS | 15.0% |
| !! | ATTGTTTAATATGTATATTG+AGG | + | chr6.1:3967218-3967237 | MS.gene54703:intron | 15.0% |
| !! | GTAAAAAAAAAAAAGAACAA+AGG | - | chr6.1:3966802-3966821 | None:intergenic | 15.0% |
| !!! | TTAAACAATACTTTAAAATC+GGG | - | chr6.1:3967207-3967226 | None:intergenic | 15.0% |
| !! | AAATCTATAACCATACAAAA+AGG | - | chr6.1:3967329-3967348 | None:intergenic | 20.0% |
| !! | AATATCAATGTTTGAAAAAC+CGG | + | chr6.1:3966985-3967004 | MS.gene54703:intron | 20.0% |
| !! | ATACGATAACTCTAATAATA+AGG | - | chr6.1:3969191-3969210 | None:intergenic | 20.0% |
| !! | GAATTTGAGAATTATGTTTA+TGG | + | chr6.1:3969904-3969923 | MS.gene54703:CDS | 20.0% |
| !! | GAGTCAATATAAGAAAATTA+AGG | + | chr6.1:3969993-3970012 | MS.gene54703:CDS | 20.0% |
| !! | GTAATGTTAAGTGAAAATAT+TGG | - | chr6.1:3967622-3967641 | None:intergenic | 20.0% |
| !! | TATTATGCTTGATCAAATTA+AGG | - | chr6.1:3968203-3968222 | None:intergenic | 20.0% |
| !! | TGAAACAGATCAATATAAAT+TGG | - | chr6.1:3969240-3969259 | None:intergenic | 20.0% |
| !! | TTCACTTTATTACTATTAGA+TGG | + | chr6.1:3968300-3968319 | MS.gene54703:CDS | 20.0% |
| !!! | ATTGATATTTTCCTATGAAA+AGG | + | chr6.1:3967891-3967910 | MS.gene54703:intron | 20.0% |
| !!! | GCAATATAGGAAATTTTTAA+TGG | + | chr6.1:3966945-3966964 | MS.gene54703:intron | 20.0% |
| ! | AAAACGCATAAATATTTGTC+AGG | - | chr6.1:3966824-3966843 | None:intergenic | 25.0% |
| ! | AAAATTTCATCAACCAGAAA+AGG | + | chr6.1:3969332-3969351 | MS.gene54703:CDS | 25.0% |
| ! | AAAGACTCTATTTGAAGAAA+AGG | - | chr6.1:3969137-3969156 | None:intergenic | 25.0% |
| ! | AAATGAATATGTCAGTTTGT+TGG | - | chr6.1:3967181-3967200 | None:intergenic | 25.0% |
| ! | AGTATACCATCTTAGAATTT+GGG | - | chr6.1:3968936-3968955 | None:intergenic | 25.0% |
| ! | ATGAAAAGGTGATAATATAG+TGG | + | chr6.1:3967905-3967924 | MS.gene54703:intron | 25.0% |
| ! | ATGTGTTTAAGTAGTTAGTA+CGG | + | chr6.1:3967780-3967799 | MS.gene54703:intron | 25.0% |
| ! | ATTCGAAAAAGAGAAACATA+GGG | + | chr6.1:3969428-3969447 | MS.gene54703:CDS | 25.0% |
| ! | ATTGAATTCAATTTCCTTGA+TGG | - | chr6.1:3969370-3969389 | None:intergenic | 25.0% |
| ! | CAAGATAATGAACTTAAGAA+TGG | + | chr6.1:3969465-3969484 | MS.gene54703:CDS | 25.0% |
| ! | GAATTCAATGAAGATAGATT+TGG | + | chr6.1:3969381-3969400 | MS.gene54703:CDS | 25.0% |
| ! | GGAACATATAAAAATTGCAA+TGG | - | chr6.1:3967737-3967756 | None:intergenic | 25.0% |
| ! | TAAGAGTTAGAATAATGACA+AGG | - | chr6.1:3967711-3967730 | None:intergenic | 25.0% |
| ! | TACAATCTACTGGAAAAAAA+TGG | + | chr6.1:3969519-3969538 | MS.gene54703:CDS | 25.0% |
| ! | TAGTATACCATCTTAGAATT+TGG | - | chr6.1:3968937-3968956 | None:intergenic | 25.0% |
| ! | TAGTGAATCAGAATAATTCA+TGG | - | chr6.1:3968697-3968716 | None:intergenic | 25.0% |
| ! | TAGTTTATCCAAGGTTTATT+AGG | + | chr6.1:3968955-3968974 | MS.gene54703:intron | 25.0% |
| ! | TATAATGTAGAATATGTTGG+AGG | + | chr6.1:3970066-3970085 | MS.gene54703:CDS | 25.0% |
| !! | CTATATTATCACCTTTTCAT+AGG | - | chr6.1:3967905-3967924 | None:intergenic | 25.0% |
| !! | TAGTATTGAGCTATATCTAA+TGG | - | chr6.1:3969637-3969656 | None:intergenic | 25.0% |
| !! | TGAAAATATTGGATTGCTTT+TGG | - | chr6.1:3967611-3967630 | None:intergenic | 25.0% |
| !!! | TGTTTTAGAACTTGCAATAT+AGG | + | chr6.1:3966932-3966951 | MS.gene54703:intron | 25.0% |
| !!! | TTTTTTTCCAGTAGATTGTA+AGG | - | chr6.1:3969519-3969538 | None:intergenic | 25.0% |
| AAAACGTGCATGTTAATAAG+TGG | + | chr6.1:3968858-3968877 | MS.gene54703:intron | 30.0% | |
| AATATGTTGGAGGAACTTAT+AGG | + | chr6.1:3970076-3970095 | MS.gene54703:CDS | 30.0% | |
| AATTCACATACAGTTGAGAT+TGG | - | chr6.1:3966763-3966782 | None:intergenic | 30.0% | |
| AATTCTAAGCATGACGTTAT+AGG | + | chr6.1:3969030-3969049 | MS.gene54703:intron | 30.0% | |
| ACGTTGAAGGAATTCTAATT+AGG | + | chr6.1:3967818-3967837 | MS.gene54703:intron | 30.0% | |
| AGAACAAAGGAAATATGAGA+AGG | - | chr6.1:3966789-3966808 | None:intergenic | 30.0% | |
| AGTCCAGTAATTATCAACTT+AGG | - | chr6.1:3968252-3968271 | None:intergenic | 30.0% | |
| AGTCTGACAAAAAGTTGTTT+CGG | + | chr6.1:3967988-3968007 | MS.gene54703:intron | 30.0% | |
| ATAGCTCAATACTATCTCAA+TGG | + | chr6.1:3969643-3969662 | MS.gene54703:CDS | 30.0% | |
| ATCTAGTCACTACAAACAAT+TGG | + | chr6.1:3969693-3969712 | MS.gene54703:CDS | 30.0% | |
| CATTACTTTGGTAGAAAAGA+TGG | + | chr6.1:3969306-3969325 | MS.gene54703:CDS | 30.0% | |
| GAAAAAACCTTACAATCTAC+TGG | + | chr6.1:3969509-3969528 | MS.gene54703:CDS | 30.0% | |
| GAAAAGTCTCACATTTGATA+AGG | + | chr6.1:3968826-3968845 | MS.gene54703:intron | 30.0% | |
| GAATTATTCTGATTCACTAC+AGG | + | chr6.1:3968698-3968717 | MS.gene54703:CDS | 30.0% | |
| GACATTGTTTCAAATGTTGT+TGG | + | chr6.1:3967424-3967443 | MS.gene54703:CDS | 30.0% | |
| GATTCGAAAAAGAGAAACAT+AGG | + | chr6.1:3969427-3969446 | MS.gene54703:CDS | 30.0% | |
| GCATAATAACATCTTAATGC+AGG | + | chr6.1:3968215-3968234 | MS.gene54703:intron | 30.0% | |
| GGAAATTGACATCATTACTT+TGG | + | chr6.1:3969294-3969313 | MS.gene54703:CDS | 30.0% | |
| GTCCAGTAATTATCAACTTA+GGG | - | chr6.1:3968251-3968270 | None:intergenic | 30.0% | |
| TAATGTTACTAGAGAGAATG+TGG | + | chr6.1:3969756-3969775 | MS.gene54703:CDS | 30.0% | |
| TAGATTTGGCTAACTTTGAA+TGG | + | chr6.1:3969395-3969414 | MS.gene54703:CDS | 30.0% | |
| TATGGTTATAGATTTAGCAG+TGG | + | chr6.1:3967334-3967353 | MS.gene54703:intron | 30.0% | |
| TCCAGTAATTATCAACTTAG+GGG | - | chr6.1:3968250-3968269 | None:intergenic | 30.0% | |
| TGTCAATCTTCAATCTGAAT+TGG | + | chr6.1:3967531-3967550 | MS.gene54703:CDS | 30.0% | |
| TTGAAGGAATTCTAATTAGG+AGG | + | chr6.1:3967821-3967840 | MS.gene54703:intron | 30.0% | |
| ! | AAAATCTAGTGCCATTGAAA+AGG | + | chr6.1:3969858-3969877 | MS.gene54703:CDS | 30.0% |
| ! | ATGGTATACTAGTTTATCCA+AGG | + | chr6.1:3968946-3968965 | MS.gene54703:intron | 30.0% |
| ! | GATCATATTGTTTCCTTTTC+TGG | - | chr6.1:3969348-3969367 | None:intergenic | 30.0% |
| ! | GATTTTGTAGGAGTTGAATT+AGG | + | chr6.1:3968905-3968924 | MS.gene54703:intron | 30.0% |
| ! | TAACTCTAGATTCTTGCTTT+TGG | + | chr6.1:3969788-3969807 | MS.gene54703:CDS | 30.0% |
| ! | TGTTTCTATAAGCTAGTGAA+TGG | - | chr6.1:3968080-3968099 | None:intergenic | 30.0% |
| ! | TTATGTTTATGGATTGCTCA+AGG | + | chr6.1:3969915-3969934 | MS.gene54703:CDS | 30.0% |
| !! | AACTCTAGATTCTTGCTTTT+GGG | + | chr6.1:3969789-3969808 | MS.gene54703:CDS | 30.0% |
| !! | ACCTTACAAATCGATTTTGT+AGG | + | chr6.1:3968893-3968912 | MS.gene54703:intron | 30.0% |
| !! | TAGTTTGTGTCCTTTTTGTA+TGG | + | chr6.1:3967316-3967335 | MS.gene54703:intron | 30.0% |
| !! | TCAAATGTTGTTGGTAACAA+TGG | + | chr6.1:3967433-3967452 | MS.gene54703:CDS | 30.0% |
| !! | TCCTACAAAATCGATTTGTA+AGG | - | chr6.1:3968897-3968916 | None:intergenic | 30.0% |
| !!! | GATTTTGGTTCTATAGAGTA+TGG | + | chr6.1:3968609-3968628 | MS.gene54703:CDS | 30.0% |
| AAAATTGGTTGAACCAACCA+TGG | + | chr6.1:3967086-3967105 | MS.gene54703:intron | 35.0% | |
| ACAAAGGAAATATGAGAAGG+AGG | - | chr6.1:3966786-3966805 | None:intergenic | 35.0% | |
| ACTACAAACAATTGGAGGAT+TGG | + | chr6.1:3969701-3969720 | MS.gene54703:CDS | 35.0% | |
| AGAACTGCTAAAACAGAATC+AGG | - | chr6.1:3968561-3968580 | None:intergenic | 35.0% | |
| CCTTACAAAATCGACTAGTA+TGG | - | chr6.1:3969072-3969091 | None:intergenic | 35.0% | |
| GCACTTAACTAAACGTTTAG+AGG | - | chr6.1:3967758-3967777 | None:intergenic | 35.0% | |
| GGAAACAATATGATCCATCA+AGG | + | chr6.1:3969353-3969372 | MS.gene54703:CDS | 35.0% | |
| GGAATTCTAATTAGGAGGTT+CGG | + | chr6.1:3967826-3967845 | MS.gene54703:intron | 35.0% | |
| GGTTTCATCTACTAAACTCA+AGG | + | chr6.1:3967552-3967571 | MS.gene54703:CDS | 35.0% | |
| GTCTCACATTTGATAAGGTA+TGG | + | chr6.1:3968831-3968850 | MS.gene54703:intron | 35.0% | |
| GTTGAACCATGTTAAACTGA+CGG | - | chr6.1:3967128-3967147 | None:intergenic | 35.0% | |
| GTTTAACCGTCAGTTTAACA+TGG | + | chr6.1:3967119-3967138 | MS.gene54703:intron | 35.0% | |
| GTTTAAGTAGTTAGTACGGT+TGG | + | chr6.1:3967784-3967803 | MS.gene54703:intron | 35.0% | |
| TAGAACCAAAATCCTGACTT+TGG | - | chr6.1:3968602-3968621 | None:intergenic | 35.0% | |
| TAGATTTAGCAGTGGAATAG+AGG | + | chr6.1:3967342-3967361 | MS.gene54703:intron | 35.0% | |
| TAGTCACTACAAACAATTGG+AGG | + | chr6.1:3969696-3969715 | MS.gene54703:CDS | 35.0% | |
| TATGACTTAGAAGTCTCATC+TGG | - | chr6.1:3967012-3967031 | None:intergenic | 35.0% | |
| TATTAAGCTACCTGCATATG+TGG | - | chr6.1:3968762-3968781 | None:intergenic | 35.0% | |
| TGAAGATTGACAGAATTCGA+CGG | - | chr6.1:3967523-3967542 | None:intergenic | 35.0% | |
| TGGAACAACTTATAGGAGAA+TGG | + | chr6.1:3969606-3969625 | MS.gene54703:CDS | 35.0% | |
| TTAATGAAGCCTCAGAAAGA+AGG | + | chr6.1:3969553-3969572 | MS.gene54703:CDS | 35.0% | |
| TTATTTGAACCAGTTGTTGC+TGG | - | chr6.1:3969739-3969758 | None:intergenic | 35.0% | |
| ! | ATAATTACTGGACTTGCTCT+TGG | + | chr6.1:3968258-3968277 | MS.gene54703:CDS | 35.0% |
| ! | CTGGTCTTCTTCGAAAATTA+TGG | + | chr6.1:3967386-3967405 | MS.gene54703:CDS | 35.0% |
| ! | GATCAACCCAAATTCTAAGA+TGG | + | chr6.1:3968927-3968946 | MS.gene54703:intron | 35.0% |
| !! | CCATACTAGTCGATTTTGTA+AGG | + | chr6.1:3969069-3969088 | MS.gene54703:intron | 35.0% |
| !! | GAATATGTCAGTTTGTTGGT+TGG | - | chr6.1:3967177-3967196 | None:intergenic | 35.0% |
| !! | GTTAAACTGCTTTTGAACCA+TGG | - | chr6.1:3967106-3967125 | None:intergenic | 35.0% |
| !! | TCCCCTAAGTTGATAATTAC+TGG | + | chr6.1:3968246-3968265 | MS.gene54703:CDS | 35.0% |
| !! | TTGGTAACAATGGACTATCA+TGG | + | chr6.1:3967443-3967462 | MS.gene54703:CDS | 35.0% |
| AAACCTCTTTGCATCACCTT+TGG | + | chr6.1:3968342-3968361 | MS.gene54703:CDS | 40.0% | |
| AAGACCTCAAACTCGAATCA+TGG | - | chr6.1:3968014-3968033 | None:intergenic | 40.0% | |
| AATCCTTTGTCACCAACTAG+TGG | - | chr6.1:3968372-3968391 | None:intergenic | 40.0% | |
| ACACACGAGAAATGTTCCAA+AGG | - | chr6.1:3968508-3968527 | None:intergenic | 40.0% | |
| ACATGTGTAAGAGTTCAGTC+AGG | + | chr6.1:3967955-3967974 | MS.gene54703:intron | 40.0% | |
| ACGTGCATGTTAATAAGTGG+TGG | + | chr6.1:3968861-3968880 | MS.gene54703:intron | 40.0% | |
| ATCAATCCATGACCAAAGTC+AGG | + | chr6.1:3968587-3968606 | MS.gene54703:CDS | 40.0% | |
| CAAAATCCTGACTTTGGTCA+TGG | - | chr6.1:3968596-3968615 | None:intergenic | 40.0% | |
| CACACGAGAAATGTTCCAAA+GGG | - | chr6.1:3968507-3968526 | None:intergenic | 40.0% | |
| CCATATCACACAGTTCTTCA+TGG | + | chr6.1:3968400-3968419 | MS.gene54703:CDS | 40.0% | |
| CCATGAAGAACTGTGTGATA+TGG | - | chr6.1:3968403-3968422 | None:intergenic | 40.0% | |
| CCTTAGTGAAAGTAGCTACA+TGG | + | chr6.1:3969963-3969982 | MS.gene54703:CDS | 40.0% | |
| CTTTCACTAAGGAAAACCTC+TGG | - | chr6.1:3969955-3969974 | None:intergenic | 40.0% | |
| GATTCACTACAGGCATGTAT+CGG | + | chr6.1:3968708-3968727 | MS.gene54703:CDS | 40.0% | |
| GCAACATTTGTGACAAGTTC+TGG | + | chr6.1:3967367-3967386 | MS.gene54703:CDS | 40.0% | |
| GCTCAATACTATCTCAATGG+TGG | + | chr6.1:3969646-3969665 | MS.gene54703:CDS | 40.0% | |
| GCTTGATCAATTGAAGTCTG+AGG | + | chr6.1:3967675-3967694 | MS.gene54703:CDS | 40.0% | |
| GGATGAGGCAACAAGAAAAT+TGG | + | chr6.1:3969879-3969898 | MS.gene54703:CDS | 40.0% | |
| TCTACGGTGGAACAACTTAT+AGG | + | chr6.1:3969599-3969618 | MS.gene54703:CDS | 40.0% | |
| TGATCTGTGATGAACTTCCT+TGG | - | chr6.1:3968468-3968487 | None:intergenic | 40.0% | |
| ! | CATGACCAAAGTCAGGATTT+TGG | + | chr6.1:3968594-3968613 | MS.gene54703:CDS | 40.0% |
| ! | CCATGTAGCTACTTTCACTA+AGG | - | chr6.1:3969966-3969985 | None:intergenic | 40.0% |
| ! | TAGTGCCATTGAAAAGGATG+AGG | + | chr6.1:3969864-3969883 | MS.gene54703:CDS | 40.0% |
| ! | TGTTGCCTCATCCTTTTCAA+TGG | - | chr6.1:3969872-3969891 | None:intergenic | 40.0% |
| !! | AACTGCTTTTGAACCATGGT+TGG | - | chr6.1:3967102-3967121 | None:intergenic | 40.0% |
| !! | ATGTATCGGCTTGCAATTGT+CGG | + | chr6.1:3968722-3968741 | MS.gene54703:CDS | 40.0% |
| !! | GTTTGGTCTCGATTGTTTTG+CGG | - | chr6.1:3967155-3967174 | None:intergenic | 40.0% |
| !! | TGTCAGTTTGTTGGTTGGTT+TGG | - | chr6.1:3967172-3967191 | None:intergenic | 40.0% |
| !! | TTTTTAGCAGCAGCAACAAC+AGG | + | chr6.1:3969273-3969292 | MS.gene54703:intron | 40.0% |
| AAAGTAGCTACATGGCATGG+TGG | + | chr6.1:3969971-3969990 | MS.gene54703:CDS | 45.0% | |
| AAGCATGACGTTATAGGCAG+TGG | + | chr6.1:3969036-3969055 | MS.gene54703:intron | 45.0% | |
| ACCAACTAGTGGAGAACCAA+AGG | - | chr6.1:3968361-3968380 | None:intergenic | 45.0% | |
| AGGATTGTCACCACATATGC+AGG | + | chr6.1:3968749-3968768 | MS.gene54703:CDS | 45.0% | |
| AGTAGTTCTTACGTGCCCTT+TGG | + | chr6.1:3968489-3968508 | MS.gene54703:CDS | 45.0% | |
| ATTGACAGAATTCGACGGTG+CGG | - | chr6.1:3967518-3967537 | None:intergenic | 45.0% | |
| CCATCGCAAAGCAATTTGCA+AGG | + | chr6.1:3968650-3968669 | MS.gene54703:CDS | 45.0% | |
| CCTTGCAAATTGCTTTGCGA+TGG | - | chr6.1:3968653-3968672 | None:intergenic | 45.0% | |
| CTTAGAAGTCTCATCTGGTC+CGG | - | chr6.1:3967007-3967026 | None:intergenic | 45.0% | |
| CTTGCAATGATCCACTTCCA+AGG | + | chr6.1:3968448-3968467 | MS.gene54703:CDS | 45.0% | |
| GAACCAAAGGTGATGCAAAG+AGG | - | chr6.1:3968348-3968367 | None:intergenic | 45.0% | |
| GGTTTATTAGGCCACCTACT+AGG | + | chr6.1:3968967-3968986 | MS.gene54703:intron | 45.0% | |
| GTAGGTGGCCTAATAAACCT+TGG | - | chr6.1:3968966-3968985 | None:intergenic | 45.0% | |
| GTGAAAGTAGCTACATGGCA+TGG | + | chr6.1:3969968-3969987 | MS.gene54703:CDS | 45.0% | |
| GTGATGAACTTCCTTGGAAG+TGG | - | chr6.1:3968462-3968481 | None:intergenic | 45.0% | |
| TGTGTAAGAGTTCAGTCAGG+AGG | + | chr6.1:3967958-3967977 | MS.gene54703:intron | 45.0% | |
| ! | ATTACTGGACTTGCTCTTGG+AGG | + | chr6.1:3968261-3968280 | MS.gene54703:CDS | 45.0% |
| ! | CATGGCTTGAACCTGATTTG+CGG | - | chr6.1:3968679-3968698 | None:intergenic | 45.0% |
| ! | CTTTTGGGCACATGTTGAAG+AGG | + | chr6.1:3969804-3969823 | MS.gene54703:CDS | 45.0% |
| !! | ACCTTTGGTTCTCCACTAGT+TGG | + | chr6.1:3968357-3968376 | MS.gene54703:CDS | 45.0% |
| !! | TCTCCACTAGTTGGTGACAA+AGG | + | chr6.1:3968366-3968385 | MS.gene54703:CDS | 45.0% |
| !! | GAATAATAAAAAATAAAAAT+TGG | + | chr6.1:3967071-3967090 | MS.gene54703:intron | 5.0% |
| AAAGGCCAACCACTGCGATT+TGG | - | chr6.1:3969119-3969138 | None:intergenic | 50.0% | |
| AAGGCCAACCACTGCGATTT+GGG | - | chr6.1:3969118-3969137 | None:intergenic | 50.0% | |
| AATAGCGGTGACCTAGTAGG+TGG | - | chr6.1:3968981-3969000 | None:intergenic | 50.0% | |
| ACCTACTAGGTCACCGCTAT+TGG | + | chr6.1:3968980-3968999 | MS.gene54703:intron | 50.0% | |
| CCTACTAGGTCACCGCTATT+GGG | + | chr6.1:3968981-3969000 | MS.gene54703:intron | 50.0% | |
| GGAATATGCAGTGTCACCAG+AGG | + | chr6.1:3969936-3969955 | MS.gene54703:CDS | 50.0% | |
| TGGACCAAGACGCAGTTCTA+TGG | + | chr6.1:3969485-3969504 | MS.gene54703:CDS | 50.0% | |
| TTCGCCATAGAACTGCGTCT+TGG | - | chr6.1:3969492-3969511 | None:intergenic | 50.0% | |
| TTGCAAGGACACCGCAAATC+AGG | + | chr6.1:3968665-3968684 | MS.gene54703:CDS | 50.0% | |
| ! | AGCTAGTGAATGGACTCGAG+TGG | - | chr6.1:3968070-3968089 | None:intergenic | 50.0% |
| ! | TCGGCCATGATTCGAGTTTG+AGG | + | chr6.1:3968007-3968026 | MS.gene54703:intron | 50.0% |
| !! | CGATTTGGGTTGCGATGTCA+TGG | - | chr6.1:3969104-3969123 | None:intergenic | 50.0% |
| !! | CTTCGTACTCGTTGGCTCTA+CGG | + | chr6.1:3969583-3969602 | MS.gene54703:CDS | 50.0% |
| !! | GTAGAAGCACCAGCAACAAC+TGG | + | chr6.1:3969727-3969746 | MS.gene54703:CDS | 50.0% |
| !! | GTCTCGATTGTTTTGCGGTC+TGG | - | chr6.1:3967150-3967169 | None:intergenic | 50.0% |
| CAGCTAGAGTGTGATCCGTG+TGG | - | chr6.1:3969007-3969026 | None:intergenic | 55.0% | |
| CATCGCAACCCAAATCGCAG+TGG | + | chr6.1:3969107-3969126 | MS.gene54703:intron | 55.0% | |
| CCCAATAGCGGTGACCTAGT+AGG | - | chr6.1:3968984-3969003 | None:intergenic | 55.0% | |
| GCAACCCAAATCGCAGTGGT+TGG | + | chr6.1:3969111-3969130 | MS.gene54703:intron | 55.0% | |
| GGCTTGCAATTGTCGGCACT+AGG | + | chr6.1:3968729-3968748 | MS.gene54703:CDS | 55.0% | |
| GGTGAGCTGAGTGACGTTGA+AGG | + | chr6.1:3967805-3967824 | MS.gene54703:intron | 55.0% | |
| TGATCCGTGTGGCCCAATAG+CGG | - | chr6.1:3968996-3969015 | None:intergenic | 55.0% | |
| AGCGACGCGCCTTCTTTCTG+AGG | - | chr6.1:3969565-3969584 | None:intergenic | 60.0% | |
| GTCACCGCTATTGGGCCACA+CGG | + | chr6.1:3968989-3969008 | MS.gene54703:intron | 60.0% | |
| !! | CGTACTCGTTGGCTCTACGG+TGG | + | chr6.1:3969586-3969605 | MS.gene54703:CDS | 60.0% |
| GCGCGTCGCTTCGTACTCGT+TGG | + | chr6.1:3969575-3969594 | MS.gene54703:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.1 | gene | 3966755 | 3970107 | 3966755 | ID=MS.gene54703 |
| chr6.1 | mRNA | 3966755 | 3970107 | 3966755 | ID=MS.gene54703.t1;Parent=MS.gene54703 |
| chr6.1 | exon | 3966755 | 3966771 | 3966755 | ID=MS.gene54703.t1.exon1;Parent=MS.gene54703.t1 |
| chr6.1 | CDS | 3966755 | 3966771 | 3966755 | ID=cds.MS.gene54703.t1;Parent=MS.gene54703.t1 |
| chr6.1 | exon | 3967345 | 3967696 | 3967345 | ID=MS.gene54703.t1.exon2;Parent=MS.gene54703.t1 |
| chr6.1 | CDS | 3967345 | 3967696 | 3967345 | ID=cds.MS.gene54703.t1;Parent=MS.gene54703.t1 |
| chr6.1 | exon | 3968237 | 3968770 | 3968237 | ID=MS.gene54703.t1.exon3;Parent=MS.gene54703.t1 |
| chr6.1 | CDS | 3968237 | 3968770 | 3968237 | ID=cds.MS.gene54703.t1;Parent=MS.gene54703.t1 |
| chr6.1 | exon | 3969283 | 3970107 | 3969283 | ID=MS.gene54703.t1.exon4;Parent=MS.gene54703.t1 |
| chr6.1 | CDS | 3969283 | 3970107 | 3969283 | ID=cds.MS.gene54703.t1;Parent=MS.gene54703.t1 |
| Gene Sequence |
| Protein sequence |
