AlfalfaGEDB | MS.gene55767

M. sativa cultivar XinJiangDaYe / MS.gene55767

KEGG: K02907
GO: GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0015934 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: PF00327.23

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55767.t1	XP_013447145.1	100	106	0	0	1	106	1	106	1.10E-51	212.2

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55767.t1	A0A072TUQ6	100.0	106	0	0	1	106	1	106	8.3e-52	212.2

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051541	MS.gene55767	-0.820442	6.85E-53	-1.69E-46
MS.gene052674	MS.gene55767	-0.813497	2.48E-51	-1.69E-46
MS.gene052675	MS.gene55767	-0.814462	1.52E-51	-1.69E-46
MS.gene052677	MS.gene55767	-0.812634	3.84E-51	-1.69E-46
MS.gene054479	MS.gene55767	-0.801598	8.35E-49	-1.69E-46
MS.gene055327	MS.gene55767	-0.81511	1.09E-51	-1.69E-46
MS.gene058081	MS.gene55767	-0.801234	9.91E-49	-1.69E-46
MS.gene058223	MS.gene55767	0.811168	8.01E-51	-1.69E-46
MS.gene058429	MS.gene55767	-0.829989	3.78E-55	-1.69E-46
MS.gene060122	MS.gene55767	0.811341	7.35E-51	-1.69E-46
MS.gene06052	MS.gene55767	-0.813951	1.97E-51	-1.69E-46
MS.gene060851	MS.gene55767	-0.800518	1.39E-48	-1.69E-46
MS.gene060932	MS.gene55767	-0.82522	5.28E-54	-1.69E-46
MS.gene06121	MS.gene55767	-0.824488	7.85E-54	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55767.t1	MTR_8g099150	100.000	106	0	0	1	106	1	106	2.78e-76	220
MS.gene55767.t1	MTR_8g016300	98.113	106	2	0	1	106	1	106	4.01e-75	217

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene55767.t1	AT5G55140	63.810	105	37	1	3	106	1	105	1.15e-45	143

Find 42 sgRNAs with CRISPR-Local

Find 45 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AGTGCGCCTATGTTGCTTTC+TGG	0.240202	4.3:-4980730	None:intergenic
AACGCTAGTGAGGGGTATTC+CGG	0.301510	4.3:+4980704	MS.gene55767:CDS
GGTTTCCTCCTTCTCTTTGC+GGG	0.349900	4.3:-4980964	None:intergenic
TCAACCTGCTTCTTCTGCTT+AGG	0.384301	4.3:+4981022	MS.gene55767:CDS
CAACCTGCTTCTTCTGCTTA+GGG	0.390606	4.3:+4981023	MS.gene55767:CDS
GATGGAACACACCTACTGTT+AGG	0.400025	4.3:+4980796	MS.gene55767:CDS
CACTAGCGTTATGTAGAGAT+TGG	0.401453	4.3:-4980691	None:intergenic
ACGCTAGTGAGGGGTATTCC+GGG	0.415196	4.3:+4980705	MS.gene55767:CDS
GGGTTTCCTCCTTCTCTTTG+CGG	0.418532	4.3:-4980965	None:intergenic
AGATTGGGGCTATAAGCAAT+TGG	0.427253	4.3:-4980675	None:intergenic
CATGAGCATGAATGCGTTCA+AGG	0.431873	4.3:+4980635	None:intergenic
AAGCAGAAGAAGCAGGTTGA+TGG	0.435151	4.3:-4981019	None:intergenic
ACTAGCGTTATGTAGAGATT+GGG	0.460548	4.3:-4980690	None:intergenic
ATGGAACACACCTACTGTTA+GGG	0.464145	4.3:+4980797	MS.gene55767:CDS
GTTAGTTGTTGTTGAGACAG+AGG	0.465463	4.3:+4980929	MS.gene55767:CDS
CTATGTTGCTTTCTGGTCCC+CGG	0.474886	4.3:-4980723	None:intergenic
CAGAGCTCTTCGTCCTCCAT+TGG	0.509479	4.3:+4980989	MS.gene55767:CDS
TGTTCCATCGCATGACAGTT+CGG	0.511917	4.3:-4980782	None:intergenic
AAAGCAACATAGGCGCACTT+TGG	0.520220	4.3:+4980734	MS.gene55767:CDS
GGTTGATGGTTTATGACCAA+TGG	0.522943	4.3:-4981005	None:intergenic
GATTGGGGCTATAAGCAATT+GGG	0.527244	4.3:-4980674	None:intergenic
TGTATTTGATATAGGTCAAG+AGG	0.544788	4.3:+4980907	MS.gene55767:intron
GTACCCTAAGCAGAAGAAGC+AGG	0.555500	4.3:-4981026	None:intergenic
GTACAAGGCCCGCAAAGAGA+AGG	0.555978	4.3:+4980956	MS.gene55767:CDS
CGGGGACCAGAAAGCAACAT+AGG	0.565331	4.3:+4980724	MS.gene55767:CDS
TGGAGGACGAAGAGCTCTGT+GGG	0.570519	4.3:-4980985	None:intergenic
TGTTAGGGGAATGATCCAGC+AGG	0.585091	4.3:+4980812	MS.gene55767:CDS
GCTATAAGCAATTGGGACAC+AGG	0.590348	4.3:-4980667	None:intergenic
GCAACCGAACTGTCATGCGA+TGG	0.602415	4.3:+4980778	MS.gene55767:CDS
CAAGGCCCGCAAAGAGAAGG+AGG	0.604236	4.3:+4980959	MS.gene55767:CDS
ATCTCTACATAACGCTAGTG+AGG	0.609634	4.3:+4980694	MS.gene55767:CDS
CTAGCGTTATGTAGAGATTG+GGG	0.616077	4.3:-4980689	None:intergenic
TGGATCATTCCCCTAACAGT+AGG	0.620579	4.3:-4980807	None:intergenic
TGATGGTTTATGACCAATGG+AGG	0.622285	4.3:-4981002	None:intergenic
CAGTTCGGTTGCATTTGCCG+AGG	0.626107	4.3:-4980767	None:intergenic
TCTCTACATAACGCTAGTGA+GGG	0.627577	4.3:+4980695	MS.gene55767:CDS
TGAGACAGAGGAGATGTACA+AGG	0.642473	4.3:+4980941	MS.gene55767:CDS
ACTTTGGAAGCACTACGCCT+CGG	0.645701	4.3:+4980750	MS.gene55767:CDS
TGGAACACACCTACTGTTAG+GGG	0.654422	4.3:+4980798	MS.gene55767:CDS
ATGGAGGACGAAGAGCTCTG+TGG	0.663844	4.3:-4980986	None:intergenic
CGCTAGTGAGGGGTATTCCG+GGG	0.667158	4.3:+4980706	MS.gene55767:CDS
CTCTACATAACGCTAGTGAG+GGG	0.670443	4.3:+4980696	MS.gene55767:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!	GGTAACTTTGTATTTGATAT+AGG	+	chr4.3:4980899-4980918	MS.gene55767:intron	25.0%
	ACCAATGTTGTTAGTATACA+GGG	-	chr4.3:4980882-4980901	None:intergenic	30.0%
	TACCAATGTTGTTAGTATAC+AGG	-	chr4.3:4980883-4980902	None:intergenic	30.0%
	TGTATTTGATATAGGTCAAG+AGG	+	chr4.3:4980907-4980926	MS.gene55767:intron	30.0%
	ACTAGCGTTATGTAGAGATT+GGG	-	chr4.3:4980693-4980712	None:intergenic	35.0%
	GGAGATAGGTAGTTTCAAAA+TGG	-	chr4.3:4980861-4980880	None:intergenic	35.0%
	TCCCTGTATACTAACAACAT+TGG	+	chr4.3:4980878-4980897	MS.gene55767:intron	35.0%
	TTGTTAGTATACAGGGAGAT+AGG	-	chr4.3:4980875-4980894	None:intergenic	35.0%
	AGATTGGGGCTATAAGCAAT+TGG	-	chr4.3:4980678-4980697	None:intergenic	40.0%
	ATCTCTACATAACGCTAGTG+AGG	+	chr4.3:4980694-4980713	MS.gene55767:CDS	40.0%
	ATGGAACACACCTACTGTTA+GGG	+	chr4.3:4980797-4980816	MS.gene55767:CDS	40.0%
	CACTAGCGTTATGTAGAGAT+TGG	-	chr4.3:4980694-4980713	None:intergenic	40.0%
	CTAGCGTTATGTAGAGATTG+GGG	-	chr4.3:4980692-4980711	None:intergenic	40.0%
	GATTGGGGCTATAAGCAATT+GGG	-	chr4.3:4980677-4980696	None:intergenic	40.0%
	TCTCTACATAACGCTAGTGA+GGG	+	chr4.3:4980695-4980714	MS.gene55767:CDS	40.0%
	TGATGGTTTATGACCAATGG+AGG	-	chr4.3:4981005-4981024	None:intergenic	40.0%
!	GTTAGTTGTTGTTGAGACAG+AGG	+	chr4.3:4980929-4980948	MS.gene55767:CDS	40.0%
!!	GGTTGATGGTTTATGACCAA+TGG	-	chr4.3:4981008-4981027	None:intergenic	40.0%
	AAAGCAACATAGGCGCACTT+TGG	+	chr4.3:4980734-4980753	MS.gene55767:CDS	45.0%
	CTCTACATAACGCTAGTGAG+GGG	+	chr4.3:4980696-4980715	MS.gene55767:CDS	45.0%
	GATGGAACACACCTACTGTT+AGG	+	chr4.3:4980796-4980815	MS.gene55767:CDS	45.0%
	GCTATAAGCAATTGGGACAC+AGG	-	chr4.3:4980670-4980689	None:intergenic	45.0%
	TGAGACAGAGGAGATGTACA+AGG	+	chr4.3:4980941-4980960	MS.gene55767:CDS	45.0%
	TGGAACACACCTACTGTTAG+GGG	+	chr4.3:4980798-4980817	MS.gene55767:CDS	45.0%
	TGGATCATTCCCCTAACAGT+AGG	-	chr4.3:4980810-4980829	None:intergenic	45.0%
	TGTTCCATCGCATGACAGTT+CGG	-	chr4.3:4980785-4980804	None:intergenic	45.0%
!	AAGCAGAAGAAGCAGGTTGA+TGG	-	chr4.3:4981022-4981041	None:intergenic	45.0%
	GATCTTGTGCTGAAACCTGC+TGG	-	chr4.3:4980830-4980849	None:intergenic	50.0%
	GGGTTTCCTCCTTCTCTTTG+CGG	-	chr4.3:4980968-4980987	None:intergenic	50.0%
	GGTTTCCTCCTTCTCTTTGC+GGG	-	chr4.3:4980967-4980986	None:intergenic	50.0%
	TGTTAGGGGAATGATCCAGC+AGG	+	chr4.3:4980812-4980831	MS.gene55767:CDS	50.0%
!!	AACGCTAGTGAGGGGTATTC+CGG	+	chr4.3:4980704-4980723	MS.gene55767:CDS	50.0%
!!	ACTTTGGAAGCACTACGCCT+CGG	+	chr4.3:4980750-4980769	MS.gene55767:CDS	50.0%
!!	AGTGCGCCTATGTTGCTTTC+TGG	-	chr4.3:4980733-4980752	None:intergenic	50.0%
!!	CTATGTTGCTTTCTGGTCCC+CGG	-	chr4.3:4980726-4980745	None:intergenic	50.0%
	ATGGAGGACGAAGAGCTCTG+TGG	-	chr4.3:4980989-4981008	None:intergenic	55.0%
	CAGAGCTCTTCGTCCTCCAT+TGG	+	chr4.3:4980989-4981008	MS.gene55767:CDS	55.0%
	CAGTTCGGTTGCATTTGCCG+AGG	-	chr4.3:4980770-4980789	None:intergenic	55.0%
	CGGGGACCAGAAAGCAACAT+AGG	+	chr4.3:4980724-4980743	MS.gene55767:CDS	55.0%
	GCAACCGAACTGTCATGCGA+TGG	+	chr4.3:4980778-4980797	MS.gene55767:CDS	55.0%
	GTACAAGGCCCGCAAAGAGA+AGG	+	chr4.3:4980956-4980975	MS.gene55767:CDS	55.0%
	TGGAGGACGAAGAGCTCTGT+GGG	-	chr4.3:4980988-4981007	None:intergenic	55.0%
!!	ACGCTAGTGAGGGGTATTCC+GGG	+	chr4.3:4980705-4980724	MS.gene55767:CDS	55.0%
	CAAGGCCCGCAAAGAGAAGG+AGG	+	chr4.3:4980959-4980978	MS.gene55767:CDS	60.0%
!!	CGCTAGTGAGGGGTATTCCG+GGG	+	chr4.3:4980706-4980725	MS.gene55767:CDS	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4.3	gene	4980636	4981043	4980636	ID=MS.gene55767
chr4.3	mRNA	4980636	4981043	4980636	ID=MS.gene55767.t1;Parent=MS.gene55767
chr4.3	exon	4980636	4980833	4980636	ID=MS.gene55767.t1.exon1;Parent=MS.gene55767.t1
chr4.3	CDS	4980636	4980833	4980636	ID=cds.MS.gene55767.t1;Parent=MS.gene55767.t1
chr4.3	exon	4980921	4981043	4980921	ID=MS.gene55767.t1.exon2;Parent=MS.gene55767.t1
chr4.3	CDS	4980921	4981043	4980921	ID=cds.MS.gene55767.t1;Parent=MS.gene55767.t1

Gene Sequence

>MS.gene55767

ATGAGCATGAATGCGTTCAAGGCATATAAGTCCTGTGTCCCAATTGCTTATAGCCCCAATCTCTACATAACGCTAGTGAGGGGTATTCCGGGGACCAGAAAGCAACATAGGCGCACTTTGGAAGCACTACGCCTCGGCAAATGCAACCGAACTGTCATGCGATGGAACACACCTACTGTTAGGGGAATGATCCAGCAGGTTTCAGCACAAGATCTATCAGATCCATTTTGAAACTACCTATCTCCCTGTATACTAACAACATTGGTAACTTTGTATTTGATATAGGTCAAGAGGTTAGTTGTTGTTGAGACAGAGGAGATGTACAAGGCCCGCAAAGAGAAGGAGGAAACCCACAGAGCTCTTCGTCCTCCATTGGTCATAAACCATCAACCTGCTTCTTCTGCTTAG

Protein sequence

>MS.gene55767.t1

MSMNAFKAYKSCVPIAYSPNLYITLVRGIPGTRKQHRRTLEALRLGKCNRTVMRWNTPTVRGMIQQVKRLVVVETEEMYKARKEKEETHRALRPPLVINHQPASSA