Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55940.t1 | XP_003594658.2 | 97.5 | 1006 | 25 | 0 | 1 | 1006 | 1 | 1006 | 0.00E+00 | 1959.5 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55940.t1 | Q8RWB8 | 67.3 | 1011 | 324 | 4 | 1 | 1005 | 1 | 1010 | 0.0e+00 | 1363.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55940.t1 | G7IL24 | 97.5 | 1006 | 25 | 0 | 1 | 1006 | 1 | 1006 | 0.0e+00 | 1959.5 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049744 | MS.gene55940 | 0.803007 | 4.28E-49 | -1.69E-46 |
MS.gene052609 | MS.gene55940 | 0.801501 | 8.74E-49 | -1.69E-46 |
MS.gene053486 | MS.gene55940 | 0.843552 | 1.31E-58 | -1.69E-46 |
MS.gene058289 | MS.gene55940 | 0.913691 | 4.59E-84 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene55940 | MS.gene005105 | PPI |
MS.gene55940 | MS.gene048780 | PPI |
MS.gene55940 | MS.gene72170 | PPI |
MS.gene55940 | MS.gene015570 | PPI |
MS.gene55940 | MS.gene048777 | PPI |
MS.gene55940 | MS.gene072801 | PPI |
MS.gene55940 | MS.gene030426 | PPI |
MS.gene55940 | MS.gene036437 | PPI |
MS.gene050376 | MS.gene55940 | PPI |
MS.gene55940 | MS.gene070339 | PPI |
MS.gene019289 | MS.gene55940 | PPI |
MS.gene55940 | MS.gene43975 | PPI |
MS.gene033776 | MS.gene55940 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55940.t1 | MTR_2g033040 | 97.904 | 1002 | 21 | 0 | 1 | 1002 | 1 | 1002 | 0.0 | 2037 |
MS.gene55940.t1 | MTR_2g033055 | 84.103 | 390 | 55 | 2 | 298 | 681 | 1 | 389 | 0.0 | 667 |
MS.gene55940.t1 | MTR_2g033080 | 89.272 | 261 | 27 | 1 | 1 | 260 | 41 | 301 | 1.11e-161 | 480 |
MS.gene55940.t1 | MTR_7g103210 | 34.709 | 533 | 300 | 12 | 498 | 1003 | 616 | 1127 | 8.31e-92 | 317 |
MS.gene55940.t1 | MTR_7g103210 | 34.274 | 496 | 286 | 10 | 498 | 973 | 616 | 1091 | 9.18e-84 | 294 |
MS.gene55940.t1 | MTR_5g066710 | 38.810 | 353 | 195 | 10 | 663 | 1005 | 3294 | 3635 | 1.26e-61 | 231 |
MS.gene55940.t1 | MTR_3g099777 | 39.093 | 353 | 194 | 10 | 663 | 1005 | 3322 | 3663 | 2.36e-61 | 230 |
MS.gene55940.t1 | MTR_4g094705 | 36.410 | 390 | 227 | 11 | 625 | 1006 | 3342 | 3718 | 2.90e-61 | 229 |
MS.gene55940.t1 | MTR_4g094708 | 35.641 | 390 | 230 | 11 | 625 | 1006 | 3363 | 3739 | 1.87e-59 | 224 |
MS.gene55940.t1 | MTR_4g133120 | 28.612 | 353 | 224 | 8 | 662 | 1001 | 519 | 856 | 1.67e-35 | 146 |
MS.gene55940.t1 | MTR_1g066940 | 27.918 | 437 | 246 | 15 | 622 | 1001 | 1101 | 1525 | 1.89e-30 | 130 |
MS.gene55940.t1 | MTR_1g066940 | 27.664 | 441 | 250 | 15 | 622 | 1005 | 1101 | 1529 | 2.17e-30 | 130 |
MS.gene55940.t1 | MTR_2g025950 | 28.530 | 347 | 222 | 11 | 666 | 1001 | 421 | 752 | 5.28e-30 | 128 |
MS.gene55940.t1 | MTR_2g025790 | 28.242 | 347 | 223 | 10 | 666 | 1001 | 470 | 801 | 2.12e-29 | 126 |
MS.gene55940.t1 | MTR_2g025830 | 27.378 | 347 | 226 | 9 | 666 | 1001 | 464 | 795 | 4.34e-28 | 122 |
MS.gene55940.t1 | MTR_2g025810 | 27.089 | 347 | 227 | 10 | 666 | 1001 | 459 | 790 | 2.93e-27 | 119 |
MS.gene55940.t1 | MTR_1g066940 | 26.895 | 409 | 232 | 14 | 622 | 973 | 1101 | 1499 | 2.34e-24 | 111 |
MS.gene55940.t1 | MTR_4g073370 | 23.881 | 469 | 249 | 14 | 624 | 1001 | 1406 | 1857 | 1.61e-21 | 102 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene55940.t1 | AT3G17205 | 67.260 | 1011 | 324 | 4 | 1 | 1005 | 1 | 1010 | 0.0 | 1420 |
MS.gene55940.t1 | AT3G17205 | 67.260 | 1011 | 324 | 4 | 1 | 1005 | 1 | 1010 | 0.0 | 1420 |
MS.gene55940.t1 | AT3G17205 | 66.963 | 1011 | 313 | 5 | 1 | 1005 | 1 | 996 | 0.0 | 1410 |
MS.gene55940.t1 | AT3G53090 | 35.385 | 520 | 312 | 9 | 498 | 1004 | 614 | 1122 | 2.79e-96 | 330 |
MS.gene55940.t1 | AT3G53090 | 35.385 | 520 | 312 | 9 | 498 | 1004 | 614 | 1122 | 2.79e-96 | 330 |
MS.gene55940.t1 | AT1G55860 | 36.990 | 392 | 222 | 12 | 625 | 1006 | 3286 | 3662 | 4.32e-60 | 226 |
MS.gene55940.t1 | AT1G70320 | 36.480 | 392 | 224 | 12 | 625 | 1006 | 3263 | 3639 | 3.41e-59 | 223 |
MS.gene55940.t1 | AT5G02880 | 27.665 | 394 | 236 | 9 | 649 | 1006 | 1103 | 1483 | 5.28e-30 | 129 |
MS.gene55940.t1 | AT5G02880 | 28.021 | 389 | 231 | 9 | 649 | 1001 | 1103 | 1478 | 5.43e-30 | 129 |
MS.gene55940.t1 | AT4G12570 | 26.496 | 351 | 234 | 7 | 662 | 1001 | 511 | 848 | 1.08e-25 | 115 |
MS.gene55940.t1 | AT4G38600 | 23.110 | 463 | 259 | 12 | 624 | 1001 | 1414 | 1864 | 4.35e-20 | 97.4 |
MS.gene55940.t1 | AT4G38600 | 23.110 | 463 | 259 | 12 | 624 | 1001 | 1414 | 1864 | 4.35e-20 | 97.4 |
MS.gene55940.t1 | AT4G38600 | 22.894 | 463 | 257 | 13 | 624 | 1001 | 1323 | 1770 | 2.26e-18 | 91.7 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGCATCAGCTATTCCTTTAT+TGG | 0.120171 | 2.3:+57425108 | MS.gene55940:CDS |
CTCTGCTGCACTTCGGATTC+AGG | 0.171175 | 2.3:+57415635 | MS.gene55940:CDS |
CAGAAATTCCTTAATATCTA+TGG | 0.177625 | 2.3:+57420873 | MS.gene55940:CDS |
CCTACCTATGCCTGTCTTCT+TGG | 0.177928 | 2.3:+57428289 | MS.gene55940:CDS |
GTGACATTTGTCAATGAATT+TGG | 0.199934 | 2.3:+57432735 | MS.gene55940:CDS |
CTTGGAAATATATTAGAAAT+TGG | 0.202850 | 2.3:+57428307 | MS.gene55940:CDS |
TCCTTACAATTCCTTTCTTA+TGG | 0.227942 | 2.3:+57426979 | MS.gene55940:CDS |
AATAAGGCGTGATCATATTT+TGG | 0.229018 | 2.3:+57432554 | MS.gene55940:CDS |
GGCTCTTTGGCAGCTACTTT+GGG | 0.248154 | 2.3:+57431373 | MS.gene55940:intron |
ACAGAAGAGGAGCTGCTTCC+AGG | 0.249212 | 2.3:+57436478 | MS.gene55940:CDS |
GTTATATTAAATAATGAATA+TGG | 0.249220 | 2.3:+57436448 | MS.gene55940:CDS |
CTAGACATCGGTTCAGAATA+AGG | 0.255077 | 2.3:+57432538 | MS.gene55940:CDS |
TGTGCAGTATGGATTATTTA+AGG | 0.259244 | 2.3:+57432833 | MS.gene55940:CDS |
AAATCGTAAACGCGTTGATT+TGG | 0.259511 | 2.3:+57415521 | MS.gene55940:CDS |
AGTAGCTTTGGATAGGAAAT+TGG | 0.261134 | 2.3:+57429969 | MS.gene55940:CDS |
TCTTTGGAGCATGTGCTTAC+AGG | 0.261855 | 2.3:+57426882 | MS.gene55940:CDS |
AGTTCTTCCCATAGATATTA+AGG | 0.262325 | 2.3:-57420881 | None:intergenic |
CTTAGACAGATTATTCTTAC+AGG | 0.265862 | 2.3:+57425217 | MS.gene55940:CDS |
TTCCCTCAGCTTCTGATATC+AGG | 0.269864 | 2.3:+57437852 | MS.gene55940:intron |
TGATGGGAACATTTCGGATT+TGG | 0.270783 | 2.3:+57436414 | MS.gene55940:CDS |
ATAAATACCTGTCTTAAGTT+TGG | 0.279749 | 2.3:-57427011 | None:intergenic |
TACTGTTTCTGCAGGCTCTT+TGG | 0.284402 | 2.3:+57431360 | MS.gene55940:intron |
GGTAGAAAATTGATCAGATT+TGG | 0.286100 | 2.3:-57428244 | None:intergenic |
ACCTGATTGTTCATTCGATA+TGG | 0.295813 | 2.3:+57428348 | MS.gene55940:CDS |
GAAATGTATCGGTTCATCTT+TGG | 0.303195 | 2.3:+57426866 | MS.gene55940:CDS |
ATCATTCCAGATCCAGGATT+TGG | 0.307993 | 2.3:-57434649 | None:intergenic |
AATCGTAAACGCGTTGATTT+GGG | 0.311088 | 2.3:+57415522 | MS.gene55940:CDS |
GTTGAGGAAGCTGGAATAGA+TGG | 0.316682 | 2.3:+57432759 | MS.gene55940:CDS |
TGCCAATGGGCCTGATGATA+TGG | 0.327981 | 2.3:+57430182 | MS.gene55940:CDS |
GCCGTCTGTTGTTCCAATCT+TGG | 0.328015 | 2.3:-57432041 | None:intergenic |
TGTGCATTCAGGAAAGCTTT+TGG | 0.328099 | 2.3:+57421077 | MS.gene55940:intron |
TTTCTGCGTTAAAGAAATAT+AGG | 0.338565 | 2.3:-57421127 | None:intergenic |
AGGCTCTTTGGCAGCTACTT+TGG | 0.339093 | 2.3:+57431372 | MS.gene55940:intron |
TGGAATATTCAAAGATTTCA+TGG | 0.343635 | 2.3:+57432785 | MS.gene55940:CDS |
AGCTGTTACTACAGTGTTAC+TGG | 0.345676 | 2.3:+57429206 | MS.gene55940:CDS |
CTGACCTTGTTCCTATGCTT+TGG | 0.346072 | 2.3:+57430298 | MS.gene55940:CDS |
TTTGAATGATTTGCCTTCCT+TGG | 0.355279 | 2.3:+57435241 | MS.gene55940:CDS |
GTTTAACGAGCATGAACTTC+AGG | 0.355730 | 2.3:+57436735 | MS.gene55940:CDS |
GCGTTATGATGGGAACATTT+CGG | 0.365937 | 2.3:+57436408 | MS.gene55940:intron |
TCAAGAAATGAGAACTTTGT+TGG | 0.367691 | 2.3:-57436672 | None:intergenic |
ATAAGATGACGATATAATTC+AGG | 0.368787 | 2.3:-57435266 | None:intergenic |
CTTTATCCAAATCCTGGATC+TGG | 0.369645 | 2.3:+57434643 | MS.gene55940:CDS |
AGTACTATAATTTCCAATAA+AGG | 0.377935 | 2.3:-57425121 | None:intergenic |
TGCTCTCGAGGACCATTACT+TGG | 0.380445 | 2.3:+57438931 | MS.gene55940:CDS |
AACTTCACCTGTCAACATTA+AGG | 0.381553 | 2.3:-57420905 | None:intergenic |
CAGAAGGAAGCGAGTATCTA+TGG | 0.382341 | 2.3:-57430010 | None:intergenic |
CAGTTAGATCTATTCCAGTT+AGG | 0.385711 | 2.3:+57431420 | MS.gene55940:CDS |
CTTGGATGTTGATGATTTGC+GGG | 0.387124 | 2.3:+57437887 | MS.gene55940:CDS |
TAAAACTTCCACCGTATAGA+AGG | 0.393265 | 2.3:+57439301 | MS.gene55940:CDS |
CAGAAAGCTTACACTATGAT+AGG | 0.399654 | 2.3:-57437931 | None:intergenic |
CTCATATCCTTCAGTGATAG+AGG | 0.404205 | 2.3:-57430945 | None:intergenic |
CTGAGAATTCAAGCGATGAT+TGG | 0.404504 | 2.3:-57436557 | None:intergenic |
TCTTCCCTTAGCTCCAAGAT+TGG | 0.404901 | 2.3:+57432028 | MS.gene55940:intron |
CATTTGCTTTATCCAAATCC+TGG | 0.411883 | 2.3:+57434637 | MS.gene55940:CDS |
ATGATGTGATTGAGATGTTC+TGG | 0.412106 | 2.3:+57438769 | MS.gene55940:CDS |
CAGCCGTTGGTGCAGTTTGT+GGG | 0.413650 | 2.3:+57430211 | MS.gene55940:CDS |
TGAAGTCATGGAAGTAGCTT+TGG | 0.413786 | 2.3:+57429957 | MS.gene55940:CDS |
TCAACGCGTTTACGATTTGA+AGG | 0.422395 | 2.3:-57415516 | None:intergenic |
TACTCGCTTCCTTCTGCAAC+TGG | 0.424069 | 2.3:+57430017 | MS.gene55940:CDS |
AGCAACTTATTCAGAAGGAT+TGG | 0.426429 | 2.3:+57436704 | MS.gene55940:CDS |
TGCTTTGGAAATTTATGAAA+CGG | 0.426979 | 2.3:+57430313 | MS.gene55940:CDS |
TTCGTGCAGTACATCATAAT+AGG | 0.427477 | 2.3:+57423531 | MS.gene55940:CDS |
ATCAGGATCACTTGACAGCT+TGG | 0.430417 | 2.3:+57437869 | MS.gene55940:CDS |
TGCAATGAGAAGCTATATCT+TGG | 0.430726 | 2.3:-57426954 | None:intergenic |
AGAACAAAGGCTCAAGATAT+CGG | 0.431066 | 2.3:-57438957 | None:intergenic |
ACAGTCATAATCCTTTCAAT+TGG | 0.435386 | 2.3:-57430261 | None:intergenic |
GCAGCCGTTGGTGCAGTTTG+TGG | 0.435595 | 2.3:+57430210 | MS.gene55940:CDS |
AGTAACAGCTGCAAGGTCTA+TGG | 0.435642 | 2.3:-57429193 | None:intergenic |
GAGCGGTTATCATACCTCTC+AGG | 0.435942 | 2.3:+57430369 | MS.gene55940:CDS |
TTTGACCATTAGCGTTATGA+TGG | 0.448204 | 2.3:+57436397 | MS.gene55940:intron |
CAGAAGAGGAGCTGCTTCCA+GGG | 0.448673 | 2.3:+57436479 | MS.gene55940:CDS |
TATGTGCTCTCGTGAACTAC+CGG | 0.450162 | 2.3:+57423483 | MS.gene55940:CDS |
ATTGCTGAGGATGATATTAC+TGG | 0.451128 | 2.3:+57429928 | MS.gene55940:CDS |
ACTAGAACAAACCTTCTATA+CGG | 0.452817 | 2.3:-57439312 | None:intergenic |
GATAACAATTACCACTCTCT+TGG | 0.461569 | 2.3:-57421205 | None:intergenic |
GTAGTTCGAAAGAAAGAGAT+AGG | 0.465255 | 2.3:+57415550 | MS.gene55940:CDS |
TCATGTATCATTCCAGATCC+AGG | 0.465555 | 2.3:-57434655 | None:intergenic |
CCAGTGATTTCCATGCTGAC+GGG | 0.466493 | 2.3:+57432076 | MS.gene55940:CDS |
CAATCATCGCTTGAATTCTC+AGG | 0.470241 | 2.3:+57436558 | MS.gene55940:CDS |
CGTTAAAGAAATATAGGAAC+TGG | 0.470389 | 2.3:-57421121 | None:intergenic |
TCCACTGTTCTACCTGGGAC+AGG | 0.471143 | 2.3:-57431508 | None:intergenic |
CCAACATTACGTTCATCAAA+TGG | 0.471450 | 2.3:+57428210 | MS.gene55940:CDS |
TGGCGGAGGAAATCAGAATC+TGG | 0.474499 | 2.3:-57421101 | None:intergenic |
CAAAGTTCTCATTTCTTGAG+AGG | 0.476177 | 2.3:+57436676 | MS.gene55940:CDS |
GCTCACCAGAAATCAGTTGA+AGG | 0.476689 | 2.3:+57425054 | MS.gene55940:intron |
CCCAGTGATTTCCATGCTGA+CGG | 0.480324 | 2.3:+57432075 | MS.gene55940:CDS |
CCATGGAGCTGTATGATAGT+AGG | 0.482104 | 2.3:+57425163 | MS.gene55940:CDS |
TAATATATTTCCAAGAAGAC+AGG | 0.485040 | 2.3:-57428299 | None:intergenic |
TCTTGATACCATTTACAAGC+AGG | 0.486257 | 2.3:+57432253 | MS.gene55940:CDS |
GCTTACACTATGATAGGTTC+CGG | 0.488295 | 2.3:-57437925 | None:intergenic |
AATTCATCTGATATATCCTT+AGG | 0.489791 | 2.3:-57428265 | None:intergenic |
GGACAAACTTTAGAAGCAAT+CGG | 0.490398 | 2.3:-57421184 | None:intergenic |
GAGATATTTCATCTGCCAAT+GGG | 0.491308 | 2.3:+57430169 | MS.gene55940:CDS |
TCTCAGGGGATGCCCCTGGT+TGG | 0.493864 | 2.3:+57430385 | MS.gene55940:CDS |
GCCATAAGAAAGGAATTGTA+AGG | 0.494443 | 2.3:-57426980 | None:intergenic |
TCTTCTTGAACAAACGCGAT+TGG | 0.494752 | 2.3:+57415578 | MS.gene55940:CDS |
GCTGATGCATTAGACTCCTT+CGG | 0.495586 | 2.3:-57425094 | None:intergenic |
CCCGTCAGCATGGAAATCAC+TGG | 0.497294 | 2.3:-57432076 | None:intergenic |
GCAAGTGGTAACAGCCAACC+AGG | 0.499899 | 2.3:-57430399 | None:intergenic |
CTCCATATCATCAGGCCCAT+TGG | 0.501041 | 2.3:-57430184 | None:intergenic |
GAATTTGGAGTTGAGGAAGC+TGG | 0.507887 | 2.3:+57432750 | MS.gene55940:CDS |
TTGAACAAACGCGATTGGAA+CGG | 0.508370 | 2.3:+57415583 | MS.gene55940:CDS |
CATTTGCAGGCTATGTTCGA+AGG | 0.508776 | 2.3:+57434885 | MS.gene55940:intron |
TGAACACATTGCCAATTGAA+AGG | 0.508999 | 2.3:+57430250 | MS.gene55940:CDS |
CATCTTTACAGGTTTGTGAC+AGG | 0.510953 | 2.3:+57438907 | MS.gene55940:intron |
GCTTGGATGTTGATGATTTG+CGG | 0.515419 | 2.3:+57437886 | MS.gene55940:CDS |
CAAGAAGAGTACCAAGGAAG+TGG | 0.516651 | 2.3:-57434696 | None:intergenic |
CCATTTGATGAACGTAATGT+TGG | 0.518371 | 2.3:-57428210 | None:intergenic |
TACCTCTCAGGGGATGCCCC+TGG | 0.520542 | 2.3:+57430381 | MS.gene55940:CDS |
ACCATATCGAATGAACAATC+AGG | 0.520688 | 2.3:-57428349 | None:intergenic |
CGTCTCTGAGCTCCTGTCCC+AGG | 0.521214 | 2.3:+57431496 | MS.gene55940:CDS |
CCTTGGTACTCTTCTTGCAA+AGG | 0.521413 | 2.3:+57434702 | MS.gene55940:CDS |
AGAAATTCCTTAATATCTAT+GGG | 0.522548 | 2.3:+57420874 | MS.gene55940:CDS |
GATGTTCTGGGAAGTGCTCA+AGG | 0.523512 | 2.3:+57438782 | MS.gene55940:CDS |
AGAGATATTTCATCTGCCAA+TGG | 0.523673 | 2.3:+57430168 | MS.gene55940:CDS |
CTAAAGTCTTACTTGTAGAC+AGG | 0.525540 | 2.3:-57430432 | None:intergenic |
GCTGCAACCTCCATATCATC+AGG | 0.526239 | 2.3:-57430192 | None:intergenic |
ACAGATTATTCTTACAGGAA+AGG | 0.527035 | 2.3:+57425222 | MS.gene55940:CDS |
AGCGGTTATCATACCTCTCA+GGG | 0.532391 | 2.3:+57430370 | MS.gene55940:CDS |
ATTTCAGCAACTTATTCAGA+AGG | 0.532582 | 2.3:+57436699 | MS.gene55940:CDS |
CCGTCAGCATGGAAATCACT+GGG | 0.532917 | 2.3:-57432075 | None:intergenic |
TTCATACAGGTAGCTGCTGT+TGG | 0.535803 | 2.3:-57439273 | None:intergenic |
CTTGATACCATTTACAAGCA+GGG | 0.536532 | 2.3:+57432254 | MS.gene55940:CDS |
GCTTATGATAGTTGATAATG+AGG | 0.536774 | 2.3:+57430902 | MS.gene55940:CDS |
AGTCCTCGAAGATCTTCTTC+TGG | 0.541198 | 2.3:-57432606 | None:intergenic |
AGGAACAAGGTCAGTTCTGT+AGG | 0.542591 | 2.3:-57430289 | None:intergenic |
GAAGCTGGAATAGATGGAGG+TGG | 0.543334 | 2.3:+57432765 | MS.gene55940:CDS |
AACTAGCTGCAGCTAGGCAA+AGG | 0.547662 | 2.3:+57432493 | MS.gene55940:CDS |
CTAAAGTTTGTCCAAGAGAG+TGG | 0.548856 | 2.3:+57421194 | MS.gene55940:CDS |
AGAAGAAGATCTTCGAGGAC+TGG | 0.550380 | 2.3:+57432608 | MS.gene55940:CDS |
GGAAATATATTAGAAATTGG+CGG | 0.551462 | 2.3:+57428310 | MS.gene55940:CDS |
TTGACCATTAGCGTTATGAT+GGG | 0.552339 | 2.3:+57436398 | MS.gene55940:intron |
CATTCTCATTTGTGACGCGC+TGG | 0.552687 | 2.3:-57436510 | None:intergenic |
AGAACTGCCTTAATGTTGAC+AGG | 0.553263 | 2.3:+57420898 | MS.gene55940:CDS |
CGGGAGCATACGAATTATGC+CGG | 0.555970 | 2.3:+57437906 | MS.gene55940:CDS |
TACTGGCAATGATGAAGTCA+TGG | 0.557165 | 2.3:+57429945 | MS.gene55940:CDS |
TTCATAAATTTCCAAAGCAT+AGG | 0.557198 | 2.3:-57430309 | None:intergenic |
TCATGGAAGTAGCTTTGGAT+AGG | 0.557242 | 2.3:+57429962 | MS.gene55940:CDS |
TTTGTGACAGGTTGCTCTCG+AGG | 0.558664 | 2.3:+57438919 | MS.gene55940:CDS |
TGTCAATGAATTTGGAGTTG+AGG | 0.560962 | 2.3:+57432743 | MS.gene55940:CDS |
AGCGATGATTGGCTACAAGA+TGG | 0.564932 | 2.3:-57436546 | None:intergenic |
TTGCCAGAAGAAGATCTTCG+AGG | 0.565479 | 2.3:+57432603 | MS.gene55940:CDS |
AAACCCACAAACTGCACCAA+CGG | 0.565726 | 2.3:-57430214 | None:intergenic |
GGATATTTCTCTCAAAACAA+TGG | 0.568363 | 2.3:+57425184 | MS.gene55940:CDS |
TATTGAAGCTATTCAACAGA+GGG | 0.570932 | 2.3:+57431463 | MS.gene55940:CDS |
TTCAGATTCTATGATTGCTG+AGG | 0.572860 | 2.3:+57429915 | MS.gene55940:intron |
ATTTCCAAGAAGACAGGCAT+AGG | 0.573882 | 2.3:-57428293 | None:intergenic |
AGAATAATCTGTCTAAGTAG+AGG | 0.574991 | 2.3:-57425211 | None:intergenic |
AGCAGAACTCTGCTGCACTT+CGG | 0.576182 | 2.3:+57415628 | MS.gene55940:CDS |
ACGATATAATTCAGGATCCA+AGG | 0.576287 | 2.3:-57435258 | None:intergenic |
GAGGAAGCTGGAATAGATGG+AGG | 0.577218 | 2.3:+57432762 | MS.gene55940:CDS |
TGGAACGGAATCGACGCTTG+TGG | 0.578080 | 2.3:+57415598 | MS.gene55940:CDS |
TAATCTGTCGAGAGCATCCT+CGG | 0.578790 | 2.3:-57439250 | None:intergenic |
ATTTGCAGGCTATGTTCGAA+GGG | 0.580348 | 2.3:+57434886 | MS.gene55940:intron |
TGATGTGATTGAGATGTTCT+GGG | 0.581943 | 2.3:+57438770 | MS.gene55940:CDS |
ATGTGCTCTCGTGAACTACC+GGG | 0.586051 | 2.3:+57423484 | MS.gene55940:CDS |
TCCAAGATTGGAACAACAGA+CGG | 0.587076 | 2.3:+57432040 | MS.gene55940:CDS |
AGCCTTTGTTCTGCATACAA+AGG | 0.588497 | 2.3:+57438968 | MS.gene55940:CDS |
AGTCTCAACTAGCTGCAGCT+AGG | 0.589104 | 2.3:+57432487 | MS.gene55940:intron |
AGATATCGGAATCCAAGTAA+TGG | 0.591674 | 2.3:-57438943 | None:intergenic |
GATAATGCAGAGAAATGTAT+CGG | 0.592130 | 2.3:+57426855 | MS.gene55940:CDS |
CCAAGAAGACAGGCATAGGT+AGG | 0.593630 | 2.3:-57428289 | None:intergenic |
TGATAGAGCTCAAACTGCCA+TGG | 0.594647 | 2.3:+57425146 | MS.gene55940:CDS |
TCTAACTGAATTAGCAGATG+AGG | 0.596236 | 2.3:-57431405 | None:intergenic |
AGTCATTCACCCCGTCAGCA+TGG | 0.596729 | 2.3:-57432086 | None:intergenic |
CCTACTATCATACAGCTCCA+TGG | 0.600394 | 2.3:-57425163 | None:intergenic |
GGAGAAACCTCTATCACTGA+AGG | 0.602474 | 2.3:+57430938 | MS.gene55940:CDS |
CACCTTTGTATGCAGAACAA+AGG | 0.608363 | 2.3:-57438970 | None:intergenic |
TATATGCAAGTTTCTTCACC+CGG | 0.609443 | 2.3:-57423502 | None:intergenic |
ATGCTGTATTTACTAGACAT+CGG | 0.612216 | 2.3:+57432526 | MS.gene55940:CDS |
TATAATTCAGGATCCAAGGA+AGG | 0.615554 | 2.3:-57435254 | None:intergenic |
ATGTTCTGGGAAGTGCTCAA+GGG | 0.620817 | 2.3:+57438783 | MS.gene55940:CDS |
AGAAATATAGGAACTGGCGG+AGG | 0.621297 | 2.3:-57421115 | None:intergenic |
TGTCAGATCTTGTCAAAGAG+TGG | 0.621443 | 2.3:-57429236 | None:intergenic |
ATTTCCAAAGCATAGGAACA+AGG | 0.623611 | 2.3:-57430302 | None:intergenic |
TGTGCTTCTTGTAGGGCTGG+AGG | 0.623790 | 2.3:+57439219 | MS.gene55940:intron |
GATGATATACCAGTTGCAGA+AGG | 0.624211 | 2.3:-57430026 | None:intergenic |
GCTGCAGCTAGGCAAAGGAA+TGG | 0.625079 | 2.3:+57432498 | MS.gene55940:CDS |
AGAAGAGGAGCTGCTTCCAG+GGG | 0.627225 | 2.3:+57436480 | MS.gene55940:CDS |
CCTGCTTCAACAAAATGATG+AGG | 0.628011 | 2.3:-57430971 | None:intergenic |
AATGGTCATCTTTGTCTGAG+CGG | 0.630785 | 2.3:+57430352 | MS.gene55940:CDS |
GATATGGAGGTTGCAGCCGT+TGG | 0.639029 | 2.3:+57430198 | MS.gene55940:CDS |
CAGTGATTTCCATGCTGACG+GGG | 0.641822 | 2.3:+57432077 | MS.gene55940:CDS |
ATATGGAGAGCAAACAGAAG+AGG | 0.643021 | 2.3:+57436465 | MS.gene55940:CDS |
ACAGGACAGAATACAGCAAG+TGG | 0.644931 | 2.3:-57430414 | None:intergenic |
TGTAAATGGTATCAAGAAAG+CGG | 0.647908 | 2.3:-57432247 | None:intergenic |
ACAGGTGTAATGTGTCACAT+TGG | 0.648085 | 2.3:+57426900 | MS.gene55940:CDS |
CAATGGGCCTGATGATATGG+AGG | 0.650698 | 2.3:+57430185 | MS.gene55940:CDS |
CGTAAACGCGTTGATTTGGG+AGG | 0.651848 | 2.3:+57415525 | MS.gene55940:CDS |
ATTTCATGGAGAACATCACA+CGG | 0.652064 | 2.3:+57432799 | MS.gene55940:CDS |
AACCAGGGGCATCCCCTGAG+AGG | 0.652327 | 2.3:-57430383 | None:intergenic |
GTCAGCATGGAAATCACTGG+GGG | 0.654099 | 2.3:-57432073 | None:intergenic |
ACACTGTAGTAACAGCTGCA+AGG | 0.654939 | 2.3:-57429200 | None:intergenic |
GGCTGGAGGTAATGCTACCG+AGG | 0.660652 | 2.3:+57439233 | MS.gene55940:CDS |
CAAGTGGTAACAGCCAACCA+GGG | 0.664170 | 2.3:-57430398 | None:intergenic |
ACTGTTATAGATCTCAAGAG+TGG | 0.668656 | 2.3:+57439388 | MS.gene55940:intron |
CTATTGAAGCTATTCAACAG+AGG | 0.670609 | 2.3:+57431462 | MS.gene55940:CDS |
AGAACAAACCTTCTATACGG+TGG | 0.671400 | 2.3:-57439309 | None:intergenic |
TAAACGAAGATGTTCTTCAG+TGG | 0.672441 | 2.3:+57415489 | None:intergenic |
TCAATTTATCCAGGAAACAG+CGG | 0.676585 | 2.3:+57434612 | MS.gene55940:intron |
AAGTGGTAACAGCCAACCAG+GGG | 0.686564 | 2.3:-57430397 | None:intergenic |
TAAAGAAATATAGGAACTGG+CGG | 0.686987 | 2.3:-57421118 | None:intergenic |
TTTCATGGAGAACATCACAC+GGG | 0.711480 | 2.3:+57432800 | MS.gene55940:CDS |
GAAGAGGAGCTGCTTCCAGG+GGG | 0.718904 | 2.3:+57436481 | MS.gene55940:CDS |
TGTTACTACAGTGTTACTGG+AGG | 0.734412 | 2.3:+57429209 | MS.gene55940:CDS |
GCGGTTATCATACCTCTCAG+GGG | 0.751027 | 2.3:+57430371 | MS.gene55940:CDS |
CGTCAGCATGGAAATCACTG+GGG | 0.751952 | 2.3:-57432074 | None:intergenic |
CCTTTGCAAGAAGAGTACCA+AGG | 0.796733 | 2.3:-57434702 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 57415498 | 57439416 | 57415498 | ID=MS.gene55940 |
chr2.3 | mRNA | 57415498 | 57439416 | 57415498 | ID=MS.gene55940.t1;Parent=MS.gene55940 |
chr2.3 | exon | 57415498 | 57415656 | 57415498 | ID=MS.gene55940.t1.exon1;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57415498 | 57415656 | 57415498 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57420822 | 57420919 | 57420822 | ID=MS.gene55940.t1.exon2;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57420822 | 57420919 | 57420822 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57421088 | 57421215 | 57421088 | ID=MS.gene55940.t1.exon3;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57421088 | 57421215 | 57421088 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57423441 | 57423552 | 57423441 | ID=MS.gene55940.t1.exon4;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57423441 | 57423552 | 57423441 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57425063 | 57425243 | 57425063 | ID=MS.gene55940.t1.exon5;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57425063 | 57425243 | 57425063 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57426855 | 57427025 | 57426855 | ID=MS.gene55940.t1.exon6;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57426855 | 57427025 | 57426855 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57428187 | 57428369 | 57428187 | ID=MS.gene55940.t1.exon7;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57428187 | 57428369 | 57428187 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57429192 | 57429267 | 57429192 | ID=MS.gene55940.t1.exon8;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57429192 | 57429267 | 57429192 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57429920 | 57430038 | 57429920 | ID=MS.gene55940.t1.exon9;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57429920 | 57430038 | 57429920 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57430153 | 57430442 | 57430153 | ID=MS.gene55940.t1.exon10;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57430153 | 57430442 | 57430153 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57430896 | 57430992 | 57430896 | ID=MS.gene55940.t1.exon11;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57430896 | 57430992 | 57430896 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57431374 | 57431517 | 57431374 | ID=MS.gene55940.t1.exon12;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57431374 | 57431517 | 57431374 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57432039 | 57432122 | 57432039 | ID=MS.gene55940.t1.exon13;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57432039 | 57432122 | 57432039 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57432204 | 57432290 | 57432204 | ID=MS.gene55940.t1.exon14;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57432204 | 57432290 | 57432204 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57432489 | 57432629 | 57432489 | ID=MS.gene55940.t1.exon15;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57432489 | 57432629 | 57432489 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57432729 | 57432854 | 57432729 | ID=MS.gene55940.t1.exon16;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57432729 | 57432854 | 57432729 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57434625 | 57434723 | 57434625 | ID=MS.gene55940.t1.exon17;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57434625 | 57434723 | 57434625 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57434894 | 57434961 | 57434894 | ID=MS.gene55940.t1.exon18;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57434894 | 57434961 | 57434894 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57435232 | 57435298 | 57435232 | ID=MS.gene55940.t1.exon19;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57435232 | 57435298 | 57435232 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57436409 | 57436579 | 57436409 | ID=MS.gene55940.t1.exon20;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57436409 | 57436579 | 57436409 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57436667 | 57436756 | 57436667 | ID=MS.gene55940.t1.exon21;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57436667 | 57436756 | 57436667 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57437861 | 57437941 | 57437861 | ID=MS.gene55940.t1.exon22;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57437861 | 57437941 | 57437861 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57438765 | 57438838 | 57438765 | ID=MS.gene55940.t1.exon23;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57438765 | 57438838 | 57438765 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57438918 | 57438989 | 57438918 | ID=MS.gene55940.t1.exon24;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57438918 | 57438989 | 57438918 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57439233 | 57439322 | 57439233 | ID=MS.gene55940.t1.exon25;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57439233 | 57439322 | 57439233 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
chr2.3 | exon | 57439398 | 57439416 | 57439398 | ID=MS.gene55940.t1.exon26;Parent=MS.gene55940.t1 |
chr2.3 | CDS | 57439398 | 57439416 | 57439398 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
Gene Sequence |
Protein sequence |