Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55940.t1 | XP_003594658.2 | 97.5 | 1006 | 25 | 0 | 1 | 1006 | 1 | 1006 | 0.00E+00 | 1959.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55940.t1 | Q8RWB8 | 67.3 | 1011 | 324 | 4 | 1 | 1005 | 1 | 1010 | 0.0e+00 | 1363.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55940.t1 | G7IL24 | 97.5 | 1006 | 25 | 0 | 1 | 1006 | 1 | 1006 | 0.0e+00 | 1959.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049744 | MS.gene55940 | 0.803007 | 4.28E-49 | -1.69E-46 |
| MS.gene052609 | MS.gene55940 | 0.801501 | 8.74E-49 | -1.69E-46 |
| MS.gene053486 | MS.gene55940 | 0.843552 | 1.31E-58 | -1.69E-46 |
| MS.gene058289 | MS.gene55940 | 0.913691 | 4.59E-84 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55940 | MS.gene005105 | PPI |
| MS.gene55940 | MS.gene048780 | PPI |
| MS.gene55940 | MS.gene72170 | PPI |
| MS.gene55940 | MS.gene015570 | PPI |
| MS.gene55940 | MS.gene048777 | PPI |
| MS.gene55940 | MS.gene072801 | PPI |
| MS.gene55940 | MS.gene030426 | PPI |
| MS.gene55940 | MS.gene036437 | PPI |
| MS.gene050376 | MS.gene55940 | PPI |
| MS.gene55940 | MS.gene070339 | PPI |
| MS.gene019289 | MS.gene55940 | PPI |
| MS.gene55940 | MS.gene43975 | PPI |
| MS.gene033776 | MS.gene55940 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55940.t1 | MTR_2g033040 | 97.904 | 1002 | 21 | 0 | 1 | 1002 | 1 | 1002 | 0.0 | 2037 |
| MS.gene55940.t1 | MTR_2g033055 | 84.103 | 390 | 55 | 2 | 298 | 681 | 1 | 389 | 0.0 | 667 |
| MS.gene55940.t1 | MTR_2g033080 | 89.272 | 261 | 27 | 1 | 1 | 260 | 41 | 301 | 1.11e-161 | 480 |
| MS.gene55940.t1 | MTR_7g103210 | 34.709 | 533 | 300 | 12 | 498 | 1003 | 616 | 1127 | 8.31e-92 | 317 |
| MS.gene55940.t1 | MTR_7g103210 | 34.274 | 496 | 286 | 10 | 498 | 973 | 616 | 1091 | 9.18e-84 | 294 |
| MS.gene55940.t1 | MTR_5g066710 | 38.810 | 353 | 195 | 10 | 663 | 1005 | 3294 | 3635 | 1.26e-61 | 231 |
| MS.gene55940.t1 | MTR_3g099777 | 39.093 | 353 | 194 | 10 | 663 | 1005 | 3322 | 3663 | 2.36e-61 | 230 |
| MS.gene55940.t1 | MTR_4g094705 | 36.410 | 390 | 227 | 11 | 625 | 1006 | 3342 | 3718 | 2.90e-61 | 229 |
| MS.gene55940.t1 | MTR_4g094708 | 35.641 | 390 | 230 | 11 | 625 | 1006 | 3363 | 3739 | 1.87e-59 | 224 |
| MS.gene55940.t1 | MTR_4g133120 | 28.612 | 353 | 224 | 8 | 662 | 1001 | 519 | 856 | 1.67e-35 | 146 |
| MS.gene55940.t1 | MTR_1g066940 | 27.918 | 437 | 246 | 15 | 622 | 1001 | 1101 | 1525 | 1.89e-30 | 130 |
| MS.gene55940.t1 | MTR_1g066940 | 27.664 | 441 | 250 | 15 | 622 | 1005 | 1101 | 1529 | 2.17e-30 | 130 |
| MS.gene55940.t1 | MTR_2g025950 | 28.530 | 347 | 222 | 11 | 666 | 1001 | 421 | 752 | 5.28e-30 | 128 |
| MS.gene55940.t1 | MTR_2g025790 | 28.242 | 347 | 223 | 10 | 666 | 1001 | 470 | 801 | 2.12e-29 | 126 |
| MS.gene55940.t1 | MTR_2g025830 | 27.378 | 347 | 226 | 9 | 666 | 1001 | 464 | 795 | 4.34e-28 | 122 |
| MS.gene55940.t1 | MTR_2g025810 | 27.089 | 347 | 227 | 10 | 666 | 1001 | 459 | 790 | 2.93e-27 | 119 |
| MS.gene55940.t1 | MTR_1g066940 | 26.895 | 409 | 232 | 14 | 622 | 973 | 1101 | 1499 | 2.34e-24 | 111 |
| MS.gene55940.t1 | MTR_4g073370 | 23.881 | 469 | 249 | 14 | 624 | 1001 | 1406 | 1857 | 1.61e-21 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene55940.t1 | AT3G17205 | 67.260 | 1011 | 324 | 4 | 1 | 1005 | 1 | 1010 | 0.0 | 1420 |
| MS.gene55940.t1 | AT3G17205 | 67.260 | 1011 | 324 | 4 | 1 | 1005 | 1 | 1010 | 0.0 | 1420 |
| MS.gene55940.t1 | AT3G17205 | 66.963 | 1011 | 313 | 5 | 1 | 1005 | 1 | 996 | 0.0 | 1410 |
| MS.gene55940.t1 | AT3G53090 | 35.385 | 520 | 312 | 9 | 498 | 1004 | 614 | 1122 | 2.79e-96 | 330 |
| MS.gene55940.t1 | AT3G53090 | 35.385 | 520 | 312 | 9 | 498 | 1004 | 614 | 1122 | 2.79e-96 | 330 |
| MS.gene55940.t1 | AT1G55860 | 36.990 | 392 | 222 | 12 | 625 | 1006 | 3286 | 3662 | 4.32e-60 | 226 |
| MS.gene55940.t1 | AT1G70320 | 36.480 | 392 | 224 | 12 | 625 | 1006 | 3263 | 3639 | 3.41e-59 | 223 |
| MS.gene55940.t1 | AT5G02880 | 27.665 | 394 | 236 | 9 | 649 | 1006 | 1103 | 1483 | 5.28e-30 | 129 |
| MS.gene55940.t1 | AT5G02880 | 28.021 | 389 | 231 | 9 | 649 | 1001 | 1103 | 1478 | 5.43e-30 | 129 |
| MS.gene55940.t1 | AT4G12570 | 26.496 | 351 | 234 | 7 | 662 | 1001 | 511 | 848 | 1.08e-25 | 115 |
| MS.gene55940.t1 | AT4G38600 | 23.110 | 463 | 259 | 12 | 624 | 1001 | 1414 | 1864 | 4.35e-20 | 97.4 |
| MS.gene55940.t1 | AT4G38600 | 23.110 | 463 | 259 | 12 | 624 | 1001 | 1414 | 1864 | 4.35e-20 | 97.4 |
| MS.gene55940.t1 | AT4G38600 | 22.894 | 463 | 257 | 13 | 624 | 1001 | 1323 | 1770 | 2.26e-18 | 91.7 |
Find 208 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCATCAGCTATTCCTTTAT+TGG | 0.120171 | 2.3:+57425108 | MS.gene55940:CDS |
| CTCTGCTGCACTTCGGATTC+AGG | 0.171175 | 2.3:+57415635 | MS.gene55940:CDS |
| CAGAAATTCCTTAATATCTA+TGG | 0.177625 | 2.3:+57420873 | MS.gene55940:CDS |
| CCTACCTATGCCTGTCTTCT+TGG | 0.177928 | 2.3:+57428289 | MS.gene55940:CDS |
| GTGACATTTGTCAATGAATT+TGG | 0.199934 | 2.3:+57432735 | MS.gene55940:CDS |
| CTTGGAAATATATTAGAAAT+TGG | 0.202850 | 2.3:+57428307 | MS.gene55940:CDS |
| TCCTTACAATTCCTTTCTTA+TGG | 0.227942 | 2.3:+57426979 | MS.gene55940:CDS |
| AATAAGGCGTGATCATATTT+TGG | 0.229018 | 2.3:+57432554 | MS.gene55940:CDS |
| GGCTCTTTGGCAGCTACTTT+GGG | 0.248154 | 2.3:+57431373 | MS.gene55940:intron |
| ACAGAAGAGGAGCTGCTTCC+AGG | 0.249212 | 2.3:+57436478 | MS.gene55940:CDS |
| GTTATATTAAATAATGAATA+TGG | 0.249220 | 2.3:+57436448 | MS.gene55940:CDS |
| CTAGACATCGGTTCAGAATA+AGG | 0.255077 | 2.3:+57432538 | MS.gene55940:CDS |
| TGTGCAGTATGGATTATTTA+AGG | 0.259244 | 2.3:+57432833 | MS.gene55940:CDS |
| AAATCGTAAACGCGTTGATT+TGG | 0.259511 | 2.3:+57415521 | MS.gene55940:CDS |
| AGTAGCTTTGGATAGGAAAT+TGG | 0.261134 | 2.3:+57429969 | MS.gene55940:CDS |
| TCTTTGGAGCATGTGCTTAC+AGG | 0.261855 | 2.3:+57426882 | MS.gene55940:CDS |
| AGTTCTTCCCATAGATATTA+AGG | 0.262325 | 2.3:-57420881 | None:intergenic |
| CTTAGACAGATTATTCTTAC+AGG | 0.265862 | 2.3:+57425217 | MS.gene55940:CDS |
| TTCCCTCAGCTTCTGATATC+AGG | 0.269864 | 2.3:+57437852 | MS.gene55940:intron |
| TGATGGGAACATTTCGGATT+TGG | 0.270783 | 2.3:+57436414 | MS.gene55940:CDS |
| ATAAATACCTGTCTTAAGTT+TGG | 0.279749 | 2.3:-57427011 | None:intergenic |
| TACTGTTTCTGCAGGCTCTT+TGG | 0.284402 | 2.3:+57431360 | MS.gene55940:intron |
| GGTAGAAAATTGATCAGATT+TGG | 0.286100 | 2.3:-57428244 | None:intergenic |
| ACCTGATTGTTCATTCGATA+TGG | 0.295813 | 2.3:+57428348 | MS.gene55940:CDS |
| GAAATGTATCGGTTCATCTT+TGG | 0.303195 | 2.3:+57426866 | MS.gene55940:CDS |
| ATCATTCCAGATCCAGGATT+TGG | 0.307993 | 2.3:-57434649 | None:intergenic |
| AATCGTAAACGCGTTGATTT+GGG | 0.311088 | 2.3:+57415522 | MS.gene55940:CDS |
| GTTGAGGAAGCTGGAATAGA+TGG | 0.316682 | 2.3:+57432759 | MS.gene55940:CDS |
| TGCCAATGGGCCTGATGATA+TGG | 0.327981 | 2.3:+57430182 | MS.gene55940:CDS |
| GCCGTCTGTTGTTCCAATCT+TGG | 0.328015 | 2.3:-57432041 | None:intergenic |
| TGTGCATTCAGGAAAGCTTT+TGG | 0.328099 | 2.3:+57421077 | MS.gene55940:intron |
| TTTCTGCGTTAAAGAAATAT+AGG | 0.338565 | 2.3:-57421127 | None:intergenic |
| AGGCTCTTTGGCAGCTACTT+TGG | 0.339093 | 2.3:+57431372 | MS.gene55940:intron |
| TGGAATATTCAAAGATTTCA+TGG | 0.343635 | 2.3:+57432785 | MS.gene55940:CDS |
| AGCTGTTACTACAGTGTTAC+TGG | 0.345676 | 2.3:+57429206 | MS.gene55940:CDS |
| CTGACCTTGTTCCTATGCTT+TGG | 0.346072 | 2.3:+57430298 | MS.gene55940:CDS |
| TTTGAATGATTTGCCTTCCT+TGG | 0.355279 | 2.3:+57435241 | MS.gene55940:CDS |
| GTTTAACGAGCATGAACTTC+AGG | 0.355730 | 2.3:+57436735 | MS.gene55940:CDS |
| GCGTTATGATGGGAACATTT+CGG | 0.365937 | 2.3:+57436408 | MS.gene55940:intron |
| TCAAGAAATGAGAACTTTGT+TGG | 0.367691 | 2.3:-57436672 | None:intergenic |
| ATAAGATGACGATATAATTC+AGG | 0.368787 | 2.3:-57435266 | None:intergenic |
| CTTTATCCAAATCCTGGATC+TGG | 0.369645 | 2.3:+57434643 | MS.gene55940:CDS |
| AGTACTATAATTTCCAATAA+AGG | 0.377935 | 2.3:-57425121 | None:intergenic |
| TGCTCTCGAGGACCATTACT+TGG | 0.380445 | 2.3:+57438931 | MS.gene55940:CDS |
| AACTTCACCTGTCAACATTA+AGG | 0.381553 | 2.3:-57420905 | None:intergenic |
| CAGAAGGAAGCGAGTATCTA+TGG | 0.382341 | 2.3:-57430010 | None:intergenic |
| CAGTTAGATCTATTCCAGTT+AGG | 0.385711 | 2.3:+57431420 | MS.gene55940:CDS |
| CTTGGATGTTGATGATTTGC+GGG | 0.387124 | 2.3:+57437887 | MS.gene55940:CDS |
| TAAAACTTCCACCGTATAGA+AGG | 0.393265 | 2.3:+57439301 | MS.gene55940:CDS |
| CAGAAAGCTTACACTATGAT+AGG | 0.399654 | 2.3:-57437931 | None:intergenic |
| CTCATATCCTTCAGTGATAG+AGG | 0.404205 | 2.3:-57430945 | None:intergenic |
| CTGAGAATTCAAGCGATGAT+TGG | 0.404504 | 2.3:-57436557 | None:intergenic |
| TCTTCCCTTAGCTCCAAGAT+TGG | 0.404901 | 2.3:+57432028 | MS.gene55940:intron |
| CATTTGCTTTATCCAAATCC+TGG | 0.411883 | 2.3:+57434637 | MS.gene55940:CDS |
| ATGATGTGATTGAGATGTTC+TGG | 0.412106 | 2.3:+57438769 | MS.gene55940:CDS |
| CAGCCGTTGGTGCAGTTTGT+GGG | 0.413650 | 2.3:+57430211 | MS.gene55940:CDS |
| TGAAGTCATGGAAGTAGCTT+TGG | 0.413786 | 2.3:+57429957 | MS.gene55940:CDS |
| TCAACGCGTTTACGATTTGA+AGG | 0.422395 | 2.3:-57415516 | None:intergenic |
| TACTCGCTTCCTTCTGCAAC+TGG | 0.424069 | 2.3:+57430017 | MS.gene55940:CDS |
| AGCAACTTATTCAGAAGGAT+TGG | 0.426429 | 2.3:+57436704 | MS.gene55940:CDS |
| TGCTTTGGAAATTTATGAAA+CGG | 0.426979 | 2.3:+57430313 | MS.gene55940:CDS |
| TTCGTGCAGTACATCATAAT+AGG | 0.427477 | 2.3:+57423531 | MS.gene55940:CDS |
| ATCAGGATCACTTGACAGCT+TGG | 0.430417 | 2.3:+57437869 | MS.gene55940:CDS |
| TGCAATGAGAAGCTATATCT+TGG | 0.430726 | 2.3:-57426954 | None:intergenic |
| AGAACAAAGGCTCAAGATAT+CGG | 0.431066 | 2.3:-57438957 | None:intergenic |
| ACAGTCATAATCCTTTCAAT+TGG | 0.435386 | 2.3:-57430261 | None:intergenic |
| GCAGCCGTTGGTGCAGTTTG+TGG | 0.435595 | 2.3:+57430210 | MS.gene55940:CDS |
| AGTAACAGCTGCAAGGTCTA+TGG | 0.435642 | 2.3:-57429193 | None:intergenic |
| GAGCGGTTATCATACCTCTC+AGG | 0.435942 | 2.3:+57430369 | MS.gene55940:CDS |
| TTTGACCATTAGCGTTATGA+TGG | 0.448204 | 2.3:+57436397 | MS.gene55940:intron |
| CAGAAGAGGAGCTGCTTCCA+GGG | 0.448673 | 2.3:+57436479 | MS.gene55940:CDS |
| TATGTGCTCTCGTGAACTAC+CGG | 0.450162 | 2.3:+57423483 | MS.gene55940:CDS |
| ATTGCTGAGGATGATATTAC+TGG | 0.451128 | 2.3:+57429928 | MS.gene55940:CDS |
| ACTAGAACAAACCTTCTATA+CGG | 0.452817 | 2.3:-57439312 | None:intergenic |
| GATAACAATTACCACTCTCT+TGG | 0.461569 | 2.3:-57421205 | None:intergenic |
| GTAGTTCGAAAGAAAGAGAT+AGG | 0.465255 | 2.3:+57415550 | MS.gene55940:CDS |
| TCATGTATCATTCCAGATCC+AGG | 0.465555 | 2.3:-57434655 | None:intergenic |
| CCAGTGATTTCCATGCTGAC+GGG | 0.466493 | 2.3:+57432076 | MS.gene55940:CDS |
| CAATCATCGCTTGAATTCTC+AGG | 0.470241 | 2.3:+57436558 | MS.gene55940:CDS |
| CGTTAAAGAAATATAGGAAC+TGG | 0.470389 | 2.3:-57421121 | None:intergenic |
| TCCACTGTTCTACCTGGGAC+AGG | 0.471143 | 2.3:-57431508 | None:intergenic |
| CCAACATTACGTTCATCAAA+TGG | 0.471450 | 2.3:+57428210 | MS.gene55940:CDS |
| TGGCGGAGGAAATCAGAATC+TGG | 0.474499 | 2.3:-57421101 | None:intergenic |
| CAAAGTTCTCATTTCTTGAG+AGG | 0.476177 | 2.3:+57436676 | MS.gene55940:CDS |
| GCTCACCAGAAATCAGTTGA+AGG | 0.476689 | 2.3:+57425054 | MS.gene55940:intron |
| CCCAGTGATTTCCATGCTGA+CGG | 0.480324 | 2.3:+57432075 | MS.gene55940:CDS |
| CCATGGAGCTGTATGATAGT+AGG | 0.482104 | 2.3:+57425163 | MS.gene55940:CDS |
| TAATATATTTCCAAGAAGAC+AGG | 0.485040 | 2.3:-57428299 | None:intergenic |
| TCTTGATACCATTTACAAGC+AGG | 0.486257 | 2.3:+57432253 | MS.gene55940:CDS |
| GCTTACACTATGATAGGTTC+CGG | 0.488295 | 2.3:-57437925 | None:intergenic |
| AATTCATCTGATATATCCTT+AGG | 0.489791 | 2.3:-57428265 | None:intergenic |
| GGACAAACTTTAGAAGCAAT+CGG | 0.490398 | 2.3:-57421184 | None:intergenic |
| GAGATATTTCATCTGCCAAT+GGG | 0.491308 | 2.3:+57430169 | MS.gene55940:CDS |
| TCTCAGGGGATGCCCCTGGT+TGG | 0.493864 | 2.3:+57430385 | MS.gene55940:CDS |
| GCCATAAGAAAGGAATTGTA+AGG | 0.494443 | 2.3:-57426980 | None:intergenic |
| TCTTCTTGAACAAACGCGAT+TGG | 0.494752 | 2.3:+57415578 | MS.gene55940:CDS |
| GCTGATGCATTAGACTCCTT+CGG | 0.495586 | 2.3:-57425094 | None:intergenic |
| CCCGTCAGCATGGAAATCAC+TGG | 0.497294 | 2.3:-57432076 | None:intergenic |
| GCAAGTGGTAACAGCCAACC+AGG | 0.499899 | 2.3:-57430399 | None:intergenic |
| CTCCATATCATCAGGCCCAT+TGG | 0.501041 | 2.3:-57430184 | None:intergenic |
| GAATTTGGAGTTGAGGAAGC+TGG | 0.507887 | 2.3:+57432750 | MS.gene55940:CDS |
| TTGAACAAACGCGATTGGAA+CGG | 0.508370 | 2.3:+57415583 | MS.gene55940:CDS |
| CATTTGCAGGCTATGTTCGA+AGG | 0.508776 | 2.3:+57434885 | MS.gene55940:intron |
| TGAACACATTGCCAATTGAA+AGG | 0.508999 | 2.3:+57430250 | MS.gene55940:CDS |
| CATCTTTACAGGTTTGTGAC+AGG | 0.510953 | 2.3:+57438907 | MS.gene55940:intron |
| GCTTGGATGTTGATGATTTG+CGG | 0.515419 | 2.3:+57437886 | MS.gene55940:CDS |
| CAAGAAGAGTACCAAGGAAG+TGG | 0.516651 | 2.3:-57434696 | None:intergenic |
| CCATTTGATGAACGTAATGT+TGG | 0.518371 | 2.3:-57428210 | None:intergenic |
| TACCTCTCAGGGGATGCCCC+TGG | 0.520542 | 2.3:+57430381 | MS.gene55940:CDS |
| ACCATATCGAATGAACAATC+AGG | 0.520688 | 2.3:-57428349 | None:intergenic |
| CGTCTCTGAGCTCCTGTCCC+AGG | 0.521214 | 2.3:+57431496 | MS.gene55940:CDS |
| CCTTGGTACTCTTCTTGCAA+AGG | 0.521413 | 2.3:+57434702 | MS.gene55940:CDS |
| AGAAATTCCTTAATATCTAT+GGG | 0.522548 | 2.3:+57420874 | MS.gene55940:CDS |
| GATGTTCTGGGAAGTGCTCA+AGG | 0.523512 | 2.3:+57438782 | MS.gene55940:CDS |
| AGAGATATTTCATCTGCCAA+TGG | 0.523673 | 2.3:+57430168 | MS.gene55940:CDS |
| CTAAAGTCTTACTTGTAGAC+AGG | 0.525540 | 2.3:-57430432 | None:intergenic |
| GCTGCAACCTCCATATCATC+AGG | 0.526239 | 2.3:-57430192 | None:intergenic |
| ACAGATTATTCTTACAGGAA+AGG | 0.527035 | 2.3:+57425222 | MS.gene55940:CDS |
| AGCGGTTATCATACCTCTCA+GGG | 0.532391 | 2.3:+57430370 | MS.gene55940:CDS |
| ATTTCAGCAACTTATTCAGA+AGG | 0.532582 | 2.3:+57436699 | MS.gene55940:CDS |
| CCGTCAGCATGGAAATCACT+GGG | 0.532917 | 2.3:-57432075 | None:intergenic |
| TTCATACAGGTAGCTGCTGT+TGG | 0.535803 | 2.3:-57439273 | None:intergenic |
| CTTGATACCATTTACAAGCA+GGG | 0.536532 | 2.3:+57432254 | MS.gene55940:CDS |
| GCTTATGATAGTTGATAATG+AGG | 0.536774 | 2.3:+57430902 | MS.gene55940:CDS |
| AGTCCTCGAAGATCTTCTTC+TGG | 0.541198 | 2.3:-57432606 | None:intergenic |
| AGGAACAAGGTCAGTTCTGT+AGG | 0.542591 | 2.3:-57430289 | None:intergenic |
| GAAGCTGGAATAGATGGAGG+TGG | 0.543334 | 2.3:+57432765 | MS.gene55940:CDS |
| AACTAGCTGCAGCTAGGCAA+AGG | 0.547662 | 2.3:+57432493 | MS.gene55940:CDS |
| CTAAAGTTTGTCCAAGAGAG+TGG | 0.548856 | 2.3:+57421194 | MS.gene55940:CDS |
| AGAAGAAGATCTTCGAGGAC+TGG | 0.550380 | 2.3:+57432608 | MS.gene55940:CDS |
| GGAAATATATTAGAAATTGG+CGG | 0.551462 | 2.3:+57428310 | MS.gene55940:CDS |
| TTGACCATTAGCGTTATGAT+GGG | 0.552339 | 2.3:+57436398 | MS.gene55940:intron |
| CATTCTCATTTGTGACGCGC+TGG | 0.552687 | 2.3:-57436510 | None:intergenic |
| AGAACTGCCTTAATGTTGAC+AGG | 0.553263 | 2.3:+57420898 | MS.gene55940:CDS |
| CGGGAGCATACGAATTATGC+CGG | 0.555970 | 2.3:+57437906 | MS.gene55940:CDS |
| TACTGGCAATGATGAAGTCA+TGG | 0.557165 | 2.3:+57429945 | MS.gene55940:CDS |
| TTCATAAATTTCCAAAGCAT+AGG | 0.557198 | 2.3:-57430309 | None:intergenic |
| TCATGGAAGTAGCTTTGGAT+AGG | 0.557242 | 2.3:+57429962 | MS.gene55940:CDS |
| TTTGTGACAGGTTGCTCTCG+AGG | 0.558664 | 2.3:+57438919 | MS.gene55940:CDS |
| TGTCAATGAATTTGGAGTTG+AGG | 0.560962 | 2.3:+57432743 | MS.gene55940:CDS |
| AGCGATGATTGGCTACAAGA+TGG | 0.564932 | 2.3:-57436546 | None:intergenic |
| TTGCCAGAAGAAGATCTTCG+AGG | 0.565479 | 2.3:+57432603 | MS.gene55940:CDS |
| AAACCCACAAACTGCACCAA+CGG | 0.565726 | 2.3:-57430214 | None:intergenic |
| GGATATTTCTCTCAAAACAA+TGG | 0.568363 | 2.3:+57425184 | MS.gene55940:CDS |
| TATTGAAGCTATTCAACAGA+GGG | 0.570932 | 2.3:+57431463 | MS.gene55940:CDS |
| TTCAGATTCTATGATTGCTG+AGG | 0.572860 | 2.3:+57429915 | MS.gene55940:intron |
| ATTTCCAAGAAGACAGGCAT+AGG | 0.573882 | 2.3:-57428293 | None:intergenic |
| AGAATAATCTGTCTAAGTAG+AGG | 0.574991 | 2.3:-57425211 | None:intergenic |
| AGCAGAACTCTGCTGCACTT+CGG | 0.576182 | 2.3:+57415628 | MS.gene55940:CDS |
| ACGATATAATTCAGGATCCA+AGG | 0.576287 | 2.3:-57435258 | None:intergenic |
| GAGGAAGCTGGAATAGATGG+AGG | 0.577218 | 2.3:+57432762 | MS.gene55940:CDS |
| TGGAACGGAATCGACGCTTG+TGG | 0.578080 | 2.3:+57415598 | MS.gene55940:CDS |
| TAATCTGTCGAGAGCATCCT+CGG | 0.578790 | 2.3:-57439250 | None:intergenic |
| ATTTGCAGGCTATGTTCGAA+GGG | 0.580348 | 2.3:+57434886 | MS.gene55940:intron |
| TGATGTGATTGAGATGTTCT+GGG | 0.581943 | 2.3:+57438770 | MS.gene55940:CDS |
| ATGTGCTCTCGTGAACTACC+GGG | 0.586051 | 2.3:+57423484 | MS.gene55940:CDS |
| TCCAAGATTGGAACAACAGA+CGG | 0.587076 | 2.3:+57432040 | MS.gene55940:CDS |
| AGCCTTTGTTCTGCATACAA+AGG | 0.588497 | 2.3:+57438968 | MS.gene55940:CDS |
| AGTCTCAACTAGCTGCAGCT+AGG | 0.589104 | 2.3:+57432487 | MS.gene55940:intron |
| AGATATCGGAATCCAAGTAA+TGG | 0.591674 | 2.3:-57438943 | None:intergenic |
| GATAATGCAGAGAAATGTAT+CGG | 0.592130 | 2.3:+57426855 | MS.gene55940:CDS |
| CCAAGAAGACAGGCATAGGT+AGG | 0.593630 | 2.3:-57428289 | None:intergenic |
| TGATAGAGCTCAAACTGCCA+TGG | 0.594647 | 2.3:+57425146 | MS.gene55940:CDS |
| TCTAACTGAATTAGCAGATG+AGG | 0.596236 | 2.3:-57431405 | None:intergenic |
| AGTCATTCACCCCGTCAGCA+TGG | 0.596729 | 2.3:-57432086 | None:intergenic |
| CCTACTATCATACAGCTCCA+TGG | 0.600394 | 2.3:-57425163 | None:intergenic |
| GGAGAAACCTCTATCACTGA+AGG | 0.602474 | 2.3:+57430938 | MS.gene55940:CDS |
| CACCTTTGTATGCAGAACAA+AGG | 0.608363 | 2.3:-57438970 | None:intergenic |
| TATATGCAAGTTTCTTCACC+CGG | 0.609443 | 2.3:-57423502 | None:intergenic |
| ATGCTGTATTTACTAGACAT+CGG | 0.612216 | 2.3:+57432526 | MS.gene55940:CDS |
| TATAATTCAGGATCCAAGGA+AGG | 0.615554 | 2.3:-57435254 | None:intergenic |
| ATGTTCTGGGAAGTGCTCAA+GGG | 0.620817 | 2.3:+57438783 | MS.gene55940:CDS |
| AGAAATATAGGAACTGGCGG+AGG | 0.621297 | 2.3:-57421115 | None:intergenic |
| TGTCAGATCTTGTCAAAGAG+TGG | 0.621443 | 2.3:-57429236 | None:intergenic |
| ATTTCCAAAGCATAGGAACA+AGG | 0.623611 | 2.3:-57430302 | None:intergenic |
| TGTGCTTCTTGTAGGGCTGG+AGG | 0.623790 | 2.3:+57439219 | MS.gene55940:intron |
| GATGATATACCAGTTGCAGA+AGG | 0.624211 | 2.3:-57430026 | None:intergenic |
| GCTGCAGCTAGGCAAAGGAA+TGG | 0.625079 | 2.3:+57432498 | MS.gene55940:CDS |
| AGAAGAGGAGCTGCTTCCAG+GGG | 0.627225 | 2.3:+57436480 | MS.gene55940:CDS |
| CCTGCTTCAACAAAATGATG+AGG | 0.628011 | 2.3:-57430971 | None:intergenic |
| AATGGTCATCTTTGTCTGAG+CGG | 0.630785 | 2.3:+57430352 | MS.gene55940:CDS |
| GATATGGAGGTTGCAGCCGT+TGG | 0.639029 | 2.3:+57430198 | MS.gene55940:CDS |
| CAGTGATTTCCATGCTGACG+GGG | 0.641822 | 2.3:+57432077 | MS.gene55940:CDS |
| ATATGGAGAGCAAACAGAAG+AGG | 0.643021 | 2.3:+57436465 | MS.gene55940:CDS |
| ACAGGACAGAATACAGCAAG+TGG | 0.644931 | 2.3:-57430414 | None:intergenic |
| TGTAAATGGTATCAAGAAAG+CGG | 0.647908 | 2.3:-57432247 | None:intergenic |
| ACAGGTGTAATGTGTCACAT+TGG | 0.648085 | 2.3:+57426900 | MS.gene55940:CDS |
| CAATGGGCCTGATGATATGG+AGG | 0.650698 | 2.3:+57430185 | MS.gene55940:CDS |
| CGTAAACGCGTTGATTTGGG+AGG | 0.651848 | 2.3:+57415525 | MS.gene55940:CDS |
| ATTTCATGGAGAACATCACA+CGG | 0.652064 | 2.3:+57432799 | MS.gene55940:CDS |
| AACCAGGGGCATCCCCTGAG+AGG | 0.652327 | 2.3:-57430383 | None:intergenic |
| GTCAGCATGGAAATCACTGG+GGG | 0.654099 | 2.3:-57432073 | None:intergenic |
| ACACTGTAGTAACAGCTGCA+AGG | 0.654939 | 2.3:-57429200 | None:intergenic |
| GGCTGGAGGTAATGCTACCG+AGG | 0.660652 | 2.3:+57439233 | MS.gene55940:CDS |
| CAAGTGGTAACAGCCAACCA+GGG | 0.664170 | 2.3:-57430398 | None:intergenic |
| ACTGTTATAGATCTCAAGAG+TGG | 0.668656 | 2.3:+57439388 | MS.gene55940:intron |
| CTATTGAAGCTATTCAACAG+AGG | 0.670609 | 2.3:+57431462 | MS.gene55940:CDS |
| AGAACAAACCTTCTATACGG+TGG | 0.671400 | 2.3:-57439309 | None:intergenic |
| TAAACGAAGATGTTCTTCAG+TGG | 0.672441 | 2.3:+57415489 | None:intergenic |
| TCAATTTATCCAGGAAACAG+CGG | 0.676585 | 2.3:+57434612 | MS.gene55940:intron |
| AAGTGGTAACAGCCAACCAG+GGG | 0.686564 | 2.3:-57430397 | None:intergenic |
| TAAAGAAATATAGGAACTGG+CGG | 0.686987 | 2.3:-57421118 | None:intergenic |
| TTTCATGGAGAACATCACAC+GGG | 0.711480 | 2.3:+57432800 | MS.gene55940:CDS |
| GAAGAGGAGCTGCTTCCAGG+GGG | 0.718904 | 2.3:+57436481 | MS.gene55940:CDS |
| TGTTACTACAGTGTTACTGG+AGG | 0.734412 | 2.3:+57429209 | MS.gene55940:CDS |
| GCGGTTATCATACCTCTCAG+GGG | 0.751027 | 2.3:+57430371 | MS.gene55940:CDS |
| CGTCAGCATGGAAATCACTG+GGG | 0.751952 | 2.3:-57432074 | None:intergenic |
| CCTTTGCAAGAAGAGTACCA+AGG | 0.796733 | 2.3:-57434702 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 57415498 | 57439416 | 57415498 | ID=MS.gene55940 |
| chr2.3 | mRNA | 57415498 | 57439416 | 57415498 | ID=MS.gene55940.t1;Parent=MS.gene55940 |
| chr2.3 | exon | 57415498 | 57415656 | 57415498 | ID=MS.gene55940.t1.exon1;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57415498 | 57415656 | 57415498 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57420822 | 57420919 | 57420822 | ID=MS.gene55940.t1.exon2;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57420822 | 57420919 | 57420822 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57421088 | 57421215 | 57421088 | ID=MS.gene55940.t1.exon3;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57421088 | 57421215 | 57421088 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57423441 | 57423552 | 57423441 | ID=MS.gene55940.t1.exon4;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57423441 | 57423552 | 57423441 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57425063 | 57425243 | 57425063 | ID=MS.gene55940.t1.exon5;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57425063 | 57425243 | 57425063 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57426855 | 57427025 | 57426855 | ID=MS.gene55940.t1.exon6;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57426855 | 57427025 | 57426855 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57428187 | 57428369 | 57428187 | ID=MS.gene55940.t1.exon7;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57428187 | 57428369 | 57428187 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57429192 | 57429267 | 57429192 | ID=MS.gene55940.t1.exon8;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57429192 | 57429267 | 57429192 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57429920 | 57430038 | 57429920 | ID=MS.gene55940.t1.exon9;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57429920 | 57430038 | 57429920 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57430153 | 57430442 | 57430153 | ID=MS.gene55940.t1.exon10;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57430153 | 57430442 | 57430153 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57430896 | 57430992 | 57430896 | ID=MS.gene55940.t1.exon11;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57430896 | 57430992 | 57430896 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57431374 | 57431517 | 57431374 | ID=MS.gene55940.t1.exon12;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57431374 | 57431517 | 57431374 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57432039 | 57432122 | 57432039 | ID=MS.gene55940.t1.exon13;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57432039 | 57432122 | 57432039 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57432204 | 57432290 | 57432204 | ID=MS.gene55940.t1.exon14;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57432204 | 57432290 | 57432204 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57432489 | 57432629 | 57432489 | ID=MS.gene55940.t1.exon15;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57432489 | 57432629 | 57432489 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57432729 | 57432854 | 57432729 | ID=MS.gene55940.t1.exon16;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57432729 | 57432854 | 57432729 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57434625 | 57434723 | 57434625 | ID=MS.gene55940.t1.exon17;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57434625 | 57434723 | 57434625 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57434894 | 57434961 | 57434894 | ID=MS.gene55940.t1.exon18;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57434894 | 57434961 | 57434894 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57435232 | 57435298 | 57435232 | ID=MS.gene55940.t1.exon19;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57435232 | 57435298 | 57435232 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57436409 | 57436579 | 57436409 | ID=MS.gene55940.t1.exon20;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57436409 | 57436579 | 57436409 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57436667 | 57436756 | 57436667 | ID=MS.gene55940.t1.exon21;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57436667 | 57436756 | 57436667 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57437861 | 57437941 | 57437861 | ID=MS.gene55940.t1.exon22;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57437861 | 57437941 | 57437861 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57438765 | 57438838 | 57438765 | ID=MS.gene55940.t1.exon23;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57438765 | 57438838 | 57438765 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57438918 | 57438989 | 57438918 | ID=MS.gene55940.t1.exon24;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57438918 | 57438989 | 57438918 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57439233 | 57439322 | 57439233 | ID=MS.gene55940.t1.exon25;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57439233 | 57439322 | 57439233 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| chr2.3 | exon | 57439398 | 57439416 | 57439398 | ID=MS.gene55940.t1.exon26;Parent=MS.gene55940.t1 |
| chr2.3 | CDS | 57439398 | 57439416 | 57439398 | ID=cds.MS.gene55940.t1;Parent=MS.gene55940.t1 |
| Gene Sequence |
| Protein sequence |