Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030426.t1 | XP_013447020.2 | 89.1 | 988 | 107 | 1 | 1 | 987 | 1 | 988 | 0.00E+00 | 1343.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030426.t1 | A0A396GWY6 | 89.1 | 988 | 107 | 1 | 1 | 987 | 1 | 988 | 0.0e+00 | 1343.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene033776 | MS.gene030426 | PPI |
| MS.gene93913 | MS.gene030426 | PPI |
| MS.gene49082 | MS.gene030426 | PPI |
| MS.gene006300 | MS.gene030426 | PPI |
| MS.gene043158 | MS.gene030426 | PPI |
| MS.gene34485 | MS.gene030426 | PPI |
| MS.gene41427 | MS.gene030426 | PPI |
| MS.gene00106 | MS.gene030426 | PPI |
| MS.gene43975 | MS.gene030426 | PPI |
| MS.gene94379 | MS.gene030426 | PPI |
| MS.gene005105 | MS.gene030426 | PPI |
| MS.gene073110 | MS.gene030426 | PPI |
| MS.gene91501 | MS.gene030426 | PPI |
| MS.gene93911 | MS.gene030426 | PPI |
| MS.gene94636 | MS.gene030426 | PPI |
| MS.gene55940 | MS.gene030426 | PPI |
| MS.gene48616 | MS.gene030426 | PPI |
| MS.gene036437 | MS.gene030426 | PPI |
| MS.gene67841 | MS.gene030426 | PPI |
| MS.gene93915 | MS.gene030426 | PPI |
| MS.gene058289 | MS.gene030426 | PPI |
| MS.gene35346 | MS.gene030426 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030426.t1 | MTR_8g097350 | 90.959 | 1095 | 35 | 5 | 1 | 1094 | 1 | 1032 | 0.0 | 1970 |
| MS.gene030426.t1 | MTR_8g097350 | 96.917 | 973 | 29 | 1 | 1 | 972 | 1 | 973 | 0.0 | 1906 |
| MS.gene030426.t1 | MTR_5g010520 | 62.814 | 1116 | 339 | 10 | 1 | 1094 | 1 | 1062 | 0.0 | 1263 |
| MS.gene030426.t1 | MTR_5g010520 | 64.632 | 950 | 300 | 8 | 1 | 928 | 1 | 936 | 0.0 | 1124 |
| MS.gene030426.t1 | MTR_0415s0020 | 96.923 | 325 | 10 | 0 | 546 | 870 | 16 | 340 | 0.0 | 619 |
| MS.gene030426.t1 | MTR_0415s0010 | 95.578 | 294 | 12 | 1 | 183 | 475 | 1 | 294 | 0.0 | 547 |
| MS.gene030426.t1 | MTR_1g100633 | 38.381 | 766 | 394 | 12 | 1 | 757 | 1 | 697 | 2.51e-143 | 450 |
| MS.gene030426.t1 | MTR_1g100633 | 38.381 | 766 | 394 | 12 | 1 | 757 | 1 | 697 | 2.93e-143 | 450 |
| MS.gene030426.t1 | MTR_1g100633 | 38.381 | 766 | 394 | 12 | 1 | 757 | 1 | 697 | 8.58e-143 | 451 |
| MS.gene030426.t1 | MTR_1g100633 | 70.909 | 55 | 16 | 0 | 1039 | 1093 | 798 | 852 | 1.37e-15 | 82.4 |
| MS.gene030426.t1 | MTR_1g062200 | 25.738 | 474 | 288 | 15 | 1 | 447 | 1 | 437 | 1.30e-24 | 112 |
| MS.gene030426.t1 | MTR_1g062200 | 25.738 | 474 | 288 | 15 | 1 | 447 | 1 | 437 | 1.55e-24 | 111 |
| MS.gene030426.t1 | MTR_1g090807 | 23.494 | 498 | 318 | 15 | 5 | 470 | 30 | 496 | 9.96e-17 | 86.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene030426.t1 | AT1G63300 | 45.536 | 1120 | 493 | 20 | 1 | 1094 | 1 | 1029 | 0.0 | 800 |
| MS.gene030426.t1 | AT5G41140 | 45.050 | 1101 | 471 | 21 | 1 | 1093 | 1 | 975 | 0.0 | 787 |
| MS.gene030426.t1 | AT5G41140 | 45.504 | 1101 | 473 | 22 | 1 | 1093 | 1 | 982 | 0.0 | 786 |
| MS.gene030426.t1 | AT5G52280 | 36.475 | 902 | 438 | 19 | 1 | 893 | 1 | 776 | 3.30e-138 | 439 |
| MS.gene030426.t1 | AT5G52280 | 30.518 | 367 | 190 | 17 | 777 | 1093 | 501 | 852 | 8.61e-14 | 76.6 |
| MS.gene030426.t1 | AT1G22060 | 27.296 | 773 | 430 | 23 | 1 | 718 | 4 | 699 | 1.06e-47 | 187 |
| MS.gene030426.t1 | AT1G22060 | 52.542 | 59 | 28 | 0 | 1036 | 1094 | 1927 | 1985 | 3.25e-11 | 68.6 |
| MS.gene030426.t1 | AT1G22060 | 27.296 | 773 | 430 | 23 | 1 | 718 | 4 | 699 | 1.06e-47 | 187 |
| MS.gene030426.t1 | AT1G22060 | 52.542 | 59 | 28 | 0 | 1036 | 1094 | 1927 | 1985 | 3.25e-11 | 68.6 |
Find 182 sgRNAs with CRISPR-Local
Find 276 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTCCAGTTCCTCAATTT+TGG | 0.100815 | 4.4:+6471119 | None:intergenic |
| AGCATCAGCTTCTTCATATT+TGG | 0.135855 | 4.4:-6471163 | MS.gene030426:CDS |
| TTTAGTCTGTTTGTAATTAT+TGG | 0.149429 | 4.4:+6472835 | None:intergenic |
| TCACTAAATTTGCCATTCTT+AGG | 0.182727 | 4.4:+6474512 | None:intergenic |
| TCTCAGATCTGTCATTTCTT+TGG | 0.232398 | 4.4:+6471443 | None:intergenic |
| TCATGTATATCGGAAGAAAA+TGG | 0.240483 | 4.4:-6470584 | MS.gene030426:CDS |
| TTCATGATGGAAATTGTAAA+TGG | 0.253945 | 4.4:-6474574 | MS.gene030426:CDS |
| CATCAATAAGAGAATGTTTC+AGG | 0.263786 | 4.4:+6471604 | None:intergenic |
| GCAATCTGGTGTGGATTCTT+TGG | 0.281309 | 4.4:-6474657 | MS.gene030426:CDS |
| ACAATTTCCATCATGAACTA+TGG | 0.285947 | 4.4:+6474580 | None:intergenic |
| TTGGTACTCTCTATAGTTCC+TGG | 0.288824 | 4.4:-6474638 | MS.gene030426:CDS |
| TTATCAAAAGCTAGTATCTT+TGG | 0.299529 | 4.4:-6474338 | MS.gene030426:CDS |
| GGTATTTCTGCTTCTTTCTC+TGG | 0.307986 | 4.4:+6470369 | None:intergenic |
| TGAACTAGTTCTTGCTGTTC+AGG | 0.309083 | 4.4:-6472906 | MS.gene030426:CDS |
| CCATCTTATATGCAAATTCA+TGG | 0.311512 | 4.4:+6472585 | None:intergenic |
| TACAAGAAAATAGTGATAAA+AGG | 0.318196 | 4.4:-6474053 | MS.gene030426:intron |
| GGTCACTTGATGAGCTAAAT+AGG | 0.319780 | 4.4:-6471710 | MS.gene030426:CDS |
| TCTATAGTTCCTGGAGATAA+TGG | 0.322135 | 4.4:-6474629 | MS.gene030426:CDS |
| CAAGGCTGAAGTTGCTGCTT+TGG | 0.329744 | 4.4:-6473242 | MS.gene030426:CDS |
| GCTTTCTCTAATCTTGTAGT+TGG | 0.331215 | 4.4:+6474602 | None:intergenic |
| TGAAACTGTTAAGTTTAATC+AGG | 0.336483 | 4.4:-6474537 | MS.gene030426:CDS |
| CCTCCTCTAACTTGCGGATC+TGG | 0.350616 | 4.4:+6472399 | None:intergenic |
| TTGCCATTACTATCCATTAC+TGG | 0.360182 | 4.4:+6470348 | None:intergenic |
| ATCAGAGATCATCACATTTC+CGG | 0.360321 | 4.4:-6473381 | MS.gene030426:CDS |
| TGCTCAGCTGGTTCAGAACT+TGG | 0.368716 | 4.4:-6473355 | MS.gene030426:CDS |
| CTTGATACTCCCCGAGAACT+TGG | 0.369394 | 4.4:-6473517 | MS.gene030426:CDS |
| AACTTAACAGTTTCATAAAC+AGG | 0.370947 | 4.4:+6474545 | None:intergenic |
| TCAGAGATCATCACATTTCC+GGG | 0.373245 | 4.4:-6473380 | MS.gene030426:CDS |
| CCGCAAGTTAGAGGAGGAAC+TGG | 0.375739 | 4.4:-6472393 | MS.gene030426:CDS |
| CAATGATACTTCATGTATAT+CGG | 0.381401 | 4.4:-6470594 | MS.gene030426:CDS |
| TTCAGAACTTGGTCTGAGTA+TGG | 0.384315 | 4.4:-6473344 | MS.gene030426:CDS |
| CATGTATATCGGAAGAAAAT+GGG | 0.384436 | 4.4:-6470583 | MS.gene030426:CDS |
| CACTAAATTTGCCATTCTTA+GGG | 0.386042 | 4.4:+6474513 | None:intergenic |
| TCAATCCAAAATTGAGGAAC+TGG | 0.391550 | 4.4:-6471124 | MS.gene030426:CDS |
| TATATCTCCAGTGCTTAAAT+AGG | 0.392273 | 4.4:+6473859 | None:intergenic |
| AACTCAATGATAGGAGCTTA+AGG | 0.401210 | 4.4:-6473883 | MS.gene030426:CDS |
| AGACGATGAACAGAAAGAAT+TGG | 0.403642 | 4.4:-6472771 | MS.gene030426:CDS |
| CTAAGTCAGCTTCAAATCCT+TGG | 0.409289 | 4.4:+6472360 | None:intergenic |
| GAACCAGATCCGCAAGTTAG+AGG | 0.409504 | 4.4:-6472402 | MS.gene030426:CDS |
| CTCTACATCCGCTGCCTGAT+GGG | 0.410650 | 4.4:+6473276 | None:intergenic |
| CTCAAGTAAGTGTGTCTCCT+TGG | 0.410803 | 4.4:+6472721 | None:intergenic |
| TATTTCTTAGTCCAAGTTCT+CGG | 0.414133 | 4.4:+6473506 | None:intergenic |
| CTCAAATTTGCAGAGGTAGA+AGG | 0.414746 | 4.4:-6470219 | MS.gene030426:CDS |
| ATTTCTTAGTCCAAGTTCTC+GGG | 0.415269 | 4.4:+6473507 | None:intergenic |
| TCTTCAGTTCATCGTTAAGA+TGG | 0.416884 | 4.4:+6471544 | None:intergenic |
| TCAGATGCAACAGATGTTGT+TGG | 0.420026 | 4.4:-6472015 | MS.gene030426:CDS |
| CTGAAGTTGCTGCTTTGGCC+AGG | 0.421147 | 4.4:-6473237 | MS.gene030426:CDS |
| TGAAACACATATCCAGAATC+TGG | 0.422058 | 4.4:-6472489 | MS.gene030426:CDS |
| TACAATTGCTTTGTTGAAGA+AGG | 0.422105 | 4.4:-6471742 | MS.gene030426:CDS |
| CATTTCCGGGACTGCTCAGC+TGG | 0.426590 | 4.4:-6473367 | MS.gene030426:CDS |
| TGCTTCTGTCAGCGCTCTCC+TGG | 0.429455 | 4.4:+6472169 | None:intergenic |
| TCCCATCAAGAATTCTCATT+CGG | 0.430666 | 4.4:-6474255 | MS.gene030426:CDS |
| AGACATTTCTCCCTAAATCA+TGG | 0.435733 | 4.4:+6472807 | None:intergenic |
| AAAATCAAAGGAGACTGCTT+TGG | 0.436264 | 4.4:-6471187 | MS.gene030426:CDS |
| GAAGGAGCACCATTTGTTGT+AGG | 0.436331 | 4.4:+6473472 | None:intergenic |
| TTAAGCACTGGAGATATAGA+TGG | 0.437350 | 4.4:-6473854 | MS.gene030426:CDS |
| AGAATTGGATGAGCTTGTTA+AGG | 0.441376 | 4.4:-6472756 | MS.gene030426:CDS |
| TAAGTCAGCTTCAAATCCTT+GGG | 0.449405 | 4.4:+6472361 | None:intergenic |
| TCAAGTTCCGATGGAAGCTC+TGG | 0.453777 | 4.4:-6473541 | MS.gene030426:CDS |
| ACATGGAACTTCAAACTCTT+CGG | 0.462481 | 4.4:-6473198 | MS.gene030426:CDS |
| CTGAACCAGCTGAGCAGTCC+CGG | 0.463105 | 4.4:+6473362 | None:intergenic |
| AGTTGCTGCTTTGGCCAGGC+AGG | 0.463456 | 4.4:-6473233 | MS.gene030426:CDS |
| CTCTCAAGATGCCCTTCCTC+GGG | 0.464252 | 4.4:-6473305 | MS.gene030426:CDS |
| GGATGAATTCTCAAATTCTC+TGG | 0.465792 | 4.4:-6472444 | MS.gene030426:CDS |
| TCCAGCTCTTGTGTTTGCAT+TGG | 0.467533 | 4.4:+6473609 | None:intergenic |
| CTGGACTGAGTGCTGATTGT+AGG | 0.469567 | 4.4:-6473591 | MS.gene030426:CDS |
| GTCTGACACATCCACCTGCC+TGG | 0.469758 | 4.4:+6473219 | None:intergenic |
| AGCATCAACCCTACAACAAA+TGG | 0.478468 | 4.4:-6473481 | MS.gene030426:CDS |
| GCCAATGCAAACACAAGAGC+TGG | 0.479693 | 4.4:-6473610 | MS.gene030426:CDS |
| TAATTTCAGGTGCTGCAATC+TGG | 0.483291 | 4.4:-6474671 | MS.gene030426:intron |
| TCATGATGGAAATTGTAAAT+GGG | 0.485115 | 4.4:-6474573 | MS.gene030426:CDS |
| GCAGATGGAGCAGCTTGCAC+TGG | 0.486211 | 4.4:-6472633 | MS.gene030426:CDS |
| AGAAGCAGAAATACCAGTAA+TGG | 0.488162 | 4.4:-6470361 | MS.gene030426:CDS |
| TCTCTACATCCGCTGCCTGA+TGG | 0.489393 | 4.4:+6473275 | None:intergenic |
| TCCTCGGGAAAGTTCCCATC+AGG | 0.490245 | 4.4:-6473290 | MS.gene030426:CDS |
| CTTCAAAATCTTGCTGTGGA+TGG | 0.491798 | 4.4:-6473427 | MS.gene030426:CDS |
| AGCACGAGGAACAAGTTGGC+AGG | 0.494013 | 4.4:-6471953 | MS.gene030426:CDS |
| GCTCTCAAGATGCCCTTCCT+CGG | 0.494210 | 4.4:-6473306 | MS.gene030426:CDS |
| TTGAAGCTCTGAAGAGTGGC+TGG | 0.496987 | 4.4:+6473444 | None:intergenic |
| TGCTGCTTTGGCCAGGCAGG+TGG | 0.498919 | 4.4:-6473230 | MS.gene030426:CDS |
| GAATGCTCTTCTCCTCCTCC+TGG | 0.498944 | 4.4:-6472524 | MS.gene030426:CDS |
| TTCGTTTGCGAAAAGATTTG+AGG | 0.499440 | 4.4:+6473077 | None:intergenic |
| AGAAATCTTAAGTTCTGACT+TGG | 0.501338 | 4.4:-6471841 | MS.gene030426:CDS |
| AAGGAGCACCATTTGTTGTA+GGG | 0.503030 | 4.4:+6473473 | None:intergenic |
| ATCGGAAGAAAATGGGGTTG+TGG | 0.503083 | 4.4:-6470576 | MS.gene030426:CDS |
| CAAAGCTTCCTCAGCTCGAA+TGG | 0.504131 | 4.4:+6472298 | None:intergenic |
| CCATGAATTTGCATATAAGA+TGG | 0.504525 | 4.4:-6472585 | MS.gene030426:CDS |
| ATCAGTCAAAGCCGATTATG+AGG | 0.504634 | 4.4:-6472081 | MS.gene030426:CDS |
| ATCCGAATGAGAATTCTTGA+TGG | 0.505562 | 4.4:+6474253 | None:intergenic |
| TAACATTTGCAGAGAGGAGG+AGG | 0.507929 | 4.4:-6473927 | MS.gene030426:intron |
| TAAGAAGCCTCAAGAATGCT+AGG | 0.509109 | 4.4:-6470170 | MS.gene030426:CDS |
| AAATCAACTCAAGAAACAAT+CGG | 0.509218 | 4.4:-6472465 | MS.gene030426:CDS |
| TTTAATCAGGACCCTAAGAA+TGG | 0.517604 | 4.4:-6474524 | MS.gene030426:CDS |
| AGCTTCTTCATATTTGGAGA+AGG | 0.518328 | 4.4:-6471157 | MS.gene030426:CDS |
| AACTTATGAAGAAATCACTT+GGG | 0.518685 | 4.4:-6471818 | MS.gene030426:CDS |
| ATGGTGAGATAGAGATGTAT+AGG | 0.523635 | 4.4:-6472679 | MS.gene030426:CDS |
| AGCCCTTCCTAGCATTCTTG+AGG | 0.524438 | 4.4:+6470163 | None:intergenic |
| ATCGTAAAGGAAAGCAAAAG+AGG | 0.525734 | 4.4:-6473169 | MS.gene030426:CDS |
| AAGCCTCAAGAATGCTAGGA+AGG | 0.527879 | 4.4:-6470166 | MS.gene030426:CDS |
| AGTATGGACGGTTCAATACA+TGG | 0.528292 | 4.4:-6473328 | MS.gene030426:CDS |
| GGCTTCAAGAAGAATTCAAA+AGG | 0.530246 | 4.4:-6472238 | MS.gene030426:CDS |
| TCGTGTGCAGAAGAGACTAC+TGG | 0.533605 | 4.4:-6472138 | MS.gene030426:CDS |
| ATGCAAATGAGACGGCTACC+AGG | 0.533949 | 4.4:-6472187 | MS.gene030426:CDS |
| TTAAGGACCTATTTAAGCAC+TGG | 0.534125 | 4.4:-6473866 | MS.gene030426:CDS |
| ATTCATTCAAAATGTTCAGA+TGG | 0.538552 | 4.4:-6474907 | None:intergenic |
| GACACATGACAAAGTTAAGC+AGG | 0.540859 | 4.4:-6472330 | MS.gene030426:CDS |
| AGTGAGTAGCAGATCACAGT+TGG | 0.541748 | 4.4:-6473041 | MS.gene030426:CDS |
| GAAAGAAAGAGACAAATCAA+TGG | 0.549242 | 4.4:-6470286 | MS.gene030426:CDS |
| CAAGGATGAAGAGGAGAAAG+TGG | 0.551905 | 4.4:-6471676 | MS.gene030426:CDS |
| GATGGGAACTTTCCCGAGGA+AGG | 0.551943 | 4.4:+6473293 | None:intergenic |
| AAAGGAAAGCAAAAGAGGGC+AGG | 0.553150 | 4.4:-6473164 | MS.gene030426:CDS |
| GGAAGTTATCAGCTTGAAAG+AGG | 0.554330 | 4.4:-6473131 | MS.gene030426:CDS |
| AGAACTTCAATCCAAAATTG+AGG | 0.555244 | 4.4:-6471130 | MS.gene030426:CDS |
| GACATTTCTCCCTAAATCAT+GGG | 0.557392 | 4.4:+6472808 | None:intergenic |
| GAACTTATGAAGAAATCACT+TGG | 0.557500 | 4.4:-6471819 | MS.gene030426:CDS |
| GCAGATCACAGTTGGAAGGT+GGG | 0.557866 | 4.4:-6473033 | MS.gene030426:CDS |
| TAACGATGAACTGAAGAAGA+AGG | 0.562401 | 4.4:-6471538 | MS.gene030426:CDS |
| GTGCTTCAAACAGGTTGTTG+CGG | 0.562680 | 4.4:-6470678 | MS.gene030426:intron |
| TCTTCGGAAACAAATCGTAA+AGG | 0.563402 | 4.4:-6473182 | MS.gene030426:CDS |
| AAGTCATTTATACCAGGAGG+AGG | 0.563516 | 4.4:+6472512 | None:intergenic |
| TTGTGGTGTCATCAGTCAAG+AGG | 0.564972 | 4.4:-6470559 | MS.gene030426:intron |
| AGCAGATCACAGTTGGAAGG+TGG | 0.565007 | 4.4:-6473034 | MS.gene030426:CDS |
| GAGAAAGCCATAGTTCATGA+TGG | 0.567547 | 4.4:-6474587 | MS.gene030426:CDS |
| AATTAACATTTGCAGAGAGG+AGG | 0.568188 | 4.4:-6473930 | MS.gene030426:intron |
| AGATGAGTTAGAGATGCAGA+TGG | 0.572394 | 4.4:-6472648 | MS.gene030426:CDS |
| GCTGATTGTAGGACATCTAG+TGG | 0.573852 | 4.4:-6473580 | MS.gene030426:CDS |
| AGCCTCAAGAATGCTAGGAA+GGG | 0.578599 | 4.4:-6470165 | MS.gene030426:CDS |
| CTCATTTGCATCAAATGTAG+TGG | 0.579737 | 4.4:+6472199 | None:intergenic |
| GGAAAGTTCCCATCAGGCAG+CGG | 0.580002 | 4.4:-6473284 | MS.gene030426:CDS |
| GTTTCAAAGTCATTTATACC+AGG | 0.583051 | 4.4:+6472506 | None:intergenic |
| ACAAGAATTGAATCATGAGA+AGG | 0.583940 | 4.4:-6472981 | MS.gene030426:CDS |
| ATGGGAACTTTCCCGAGGAA+GGG | 0.586539 | 4.4:+6473294 | None:intergenic |
| CAAAAGGCTATCAATGCAGA+TGG | 0.586827 | 4.4:-6472222 | MS.gene030426:CDS |
| GATGCATCTCAAGGATGAAG+AGG | 0.587248 | 4.4:-6471685 | MS.gene030426:CDS |
| ATACCAGTAATGGATAGTAA+TGG | 0.592797 | 4.4:-6470351 | MS.gene030426:CDS |
| TGAGGAACTGGAGGACAAAG+TGG | 0.595036 | 4.4:-6471112 | MS.gene030426:CDS |
| CATTCAAAATGTTCAGATGG+AGG | 0.595398 | 4.4:-6474904 | None:intergenic |
| CTGGTTCTCAAGAGACTCGA+TGG | 0.595679 | 4.4:+6472418 | None:intergenic |
| CCAGTTCCTCCTCTAACTTG+CGG | 0.595754 | 4.4:+6472393 | None:intergenic |
| GCAAAGAGCCATTCGAGCTG+AGG | 0.597598 | 4.4:-6472306 | MS.gene030426:CDS |
| AGTAGCAGATCACAGTTGGA+AGG | 0.599454 | 4.4:-6473037 | MS.gene030426:CDS |
| TCCGAATGAGAATTCTTGAT+GGG | 0.599669 | 4.4:+6474254 | None:intergenic |
| GAAGAGTGGCTGGTGACTGA+AGG | 0.602498 | 4.4:+6473454 | None:intergenic |
| TTTCCATCTCACTCTCACTC+AGG | 0.602795 | 4.4:-6474843 | MS.gene030426:intron |
| AGAGCTTCAAAATCTTGCTG+TGG | 0.602851 | 4.4:-6473431 | MS.gene030426:CDS |
| ATCCAAAATTGAGGAACTGG+AGG | 0.603562 | 4.4:-6471121 | MS.gene030426:CDS |
| CAGATCACAGTTGGAAGGTG+GGG | 0.604354 | 4.4:-6473032 | MS.gene030426:CDS |
| ATTACAATGTCAAGTTCCGA+TGG | 0.606268 | 4.4:-6473550 | MS.gene030426:CDS |
| AAATAGGATGATGCATCTCA+AGG | 0.610535 | 4.4:-6471694 | MS.gene030426:CDS |
| ACAGGACCTGATAAAATCAA+AGG | 0.611635 | 4.4:-6471199 | MS.gene030426:intron |
| CTGTTGCATCTGAACTGTCA+TGG | 0.612030 | 4.4:+6472025 | None:intergenic |
| TACATTTGATGCAAATGAGA+CGG | 0.612659 | 4.4:-6472195 | MS.gene030426:CDS |
| GCACGAGGAACAAGTTGGCA+GGG | 0.612830 | 4.4:-6471952 | MS.gene030426:CDS |
| TCAGAGCATTGCTTTGCCAA+AGG | 0.613432 | 4.4:-6471079 | MS.gene030426:intron |
| TCAGGTGCTGCAATCTGGTG+TGG | 0.614625 | 4.4:-6474666 | MS.gene030426:intron |
| GAACTTGGTCTGAGTATGGA+CGG | 0.616193 | 4.4:-6473340 | MS.gene030426:CDS |
| GCAGGTGGATGTGTCAGACA+TGG | 0.623993 | 4.4:-6473215 | MS.gene030426:CDS |
| ATCAAGTCCAGAGCTTCCAT+CGG | 0.625295 | 4.4:+6473534 | None:intergenic |
| TCAAAGTCATTTATACCAGG+AGG | 0.633961 | 4.4:+6472509 | None:intergenic |
| GTAATGGATAGTAATGGCAA+TGG | 0.635117 | 4.4:-6470345 | MS.gene030426:CDS |
| GTACCTGAGTGAGAGTGAGA+TGG | 0.637352 | 4.4:+6474840 | None:intergenic |
| TCGTAAAGGAAAGCAAAAGA+GGG | 0.638358 | 4.4:-6473168 | MS.gene030426:CDS |
| TTTCTTAGTCCAAGTTCTCG+GGG | 0.640293 | 4.4:+6473508 | None:intergenic |
| ATGTATATCGGAAGAAAATG+GGG | 0.640455 | 4.4:-6470582 | MS.gene030426:CDS |
| AAGAGGGCAGGAGCTCGCAA+AGG | 0.640963 | 4.4:-6473152 | MS.gene030426:CDS |
| ATTCAGTTAAAACGTTGCTG+AGG | 0.645034 | 4.4:+6470319 | None:intergenic |
| TAAGGATCAAAGCAGTGCCA+AGG | 0.648474 | 4.4:-6472738 | MS.gene030426:CDS |
| ACTTATGAAGAAATCACTTG+GGG | 0.649817 | 4.4:-6471817 | MS.gene030426:CDS |
| CCAGATCCGCAAGTTAGAGG+AGG | 0.652701 | 4.4:-6472399 | MS.gene030426:CDS |
| ATTACAGTTAAATAAGACAC+AGG | 0.657648 | 4.4:-6472939 | MS.gene030426:CDS |
| AATGAGTCTCAAATTTGCAG+AGG | 0.664150 | 4.4:-6470226 | MS.gene030426:CDS |
| TGTTGAAGAAGGAAGCAGAA+CGG | 0.665549 | 4.4:-6471731 | MS.gene030426:CDS |
| GCCTGATGGGAACTTTCCCG+AGG | 0.673014 | 4.4:+6473289 | None:intergenic |
| AAGGATGAAGAGGAGAAAGT+GGG | 0.675953 | 4.4:-6471675 | MS.gene030426:CDS |
| GAACTGGAGAAACAAGCCCA+AGG | 0.679568 | 4.4:-6472377 | MS.gene030426:CDS |
| TCAAACACTAACATGCAAGA+CGG | 0.686206 | 4.4:+6474229 | None:intergenic |
| GGAACTGGAGGACAAAGTGG+AGG | 0.698428 | 4.4:-6471109 | MS.gene030426:CDS |
| TGAGAATGAAAAGCTTACAG+TGG | 0.700759 | 4.4:-6471898 | MS.gene030426:CDS |
| TCTGCTCTAACATTGCATCG+AGG | 0.707967 | 4.4:+6472882 | None:intergenic |
| TGTGCAGAAGAGACTACTGG+AGG | 0.721029 | 4.4:-6472135 | MS.gene030426:CDS |
| AGTTGGCAGGGATTTCTCCG+AGG | 0.728439 | 4.4:-6471940 | MS.gene030426:CDS |
| AAAATGCTAATACTGCAGAG+AGG | 0.734559 | 4.4:-6472259 | MS.gene030426:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAACATAATTTTAACAAT+GGG | + | chr4.4:6471381-6471400 | None:intergenic | 15.0% |
| !!! | TTATTATTTTGTGATTTCAA+CGG | - | chr4.4:6470574-6470593 | MS.gene030426:CDS | 15.0% |
| !!! | TTCAAACATAATTTTAACAA+TGG | + | chr4.4:6471382-6471401 | None:intergenic | 15.0% |
| !! | ACTAATGTTTGTATAATTTC+AGG | - | chr4.4:6470373-6470392 | MS.gene030426:CDS | 20.0% |
| !! | ATATATATATATGTCTTGCT+TGG | - | chr4.4:6474268-6474287 | MS.gene030426:CDS | 20.0% |
| !! | GTTATTGAATGGTTTATTTA+TGG | - | chr4.4:6474631-6474650 | MS.gene030426:CDS | 20.0% |
| !! | TAAGACAAATTATAAATGAC+AGG | + | chr4.4:6474133-6474152 | None:intergenic | 20.0% |
| !! | TACAAGAAAATAGTGATAAA+AGG | - | chr4.4:6471004-6471023 | MS.gene030426:intron | 20.0% |
| !! | TACAATAATGAATAATTCCT+TGG | + | chr4.4:6471274-6471293 | None:intergenic | 20.0% |
| !! | TTTAGTCTGTTTGTAATTAT+TGG | + | chr4.4:6472225-6472244 | None:intergenic | 20.0% |
| !!! | AAATAGTGATAAAAGGTATA+TGG | - | chr4.4:6471011-6471030 | MS.gene030426:intron | 20.0% |
| !!! | AATAGTGATAAAAGGTATAT+GGG | - | chr4.4:6471012-6471031 | MS.gene030426:intron | 20.0% |
| !!! | AATGATGAACAATTTTGAAT+TGG | + | chr4.4:6470317-6470336 | None:intergenic | 20.0% |
| !!! | GATTCTTTTAAATATTCGAA+AGG | - | chr4.4:6473270-6473289 | MS.gene030426:CDS | 20.0% |
| !!! | TGTCATTTATAATTTGTCTT+AGG | - | chr4.4:6474132-6474151 | MS.gene030426:intron | 20.0% |
| !!! | TTGATTGTGAATTTTTGATA+TGG | - | chr4.4:6470670-6470689 | MS.gene030426:intron | 20.0% |
| ! | AAATCAACTCAAGAAACAAT+CGG | - | chr4.4:6472592-6472611 | MS.gene030426:CDS | 25.0% |
| ! | AACTTAACAGTTTCATAAAC+AGG | + | chr4.4:6470515-6470534 | None:intergenic | 25.0% |
| ! | AACTTATGAAGAAATCACTT+GGG | - | chr4.4:6473239-6473258 | MS.gene030426:CDS | 25.0% |
| ! | AATGTTAGAGCAGAAAAATA+AGG | - | chr4.4:6472184-6472203 | MS.gene030426:CDS | 25.0% |
| ! | AGTGAAAATAAAAATGCTTG+AGG | - | chr4.4:6473636-6473655 | MS.gene030426:intron | 25.0% |
| ! | ATTACAGTTAAATAAGACAC+AGG | - | chr4.4:6472118-6472137 | MS.gene030426:CDS | 25.0% |
| ! | CAAAATCTATATCCAGAAAA+GGG | + | chr4.4:6471060-6471079 | None:intergenic | 25.0% |
| ! | CAATGATACTTCATGTATAT+CGG | - | chr4.4:6474463-6474482 | MS.gene030426:intron | 25.0% |
| ! | CTAGATGAAAATATCTATAG+AGG | + | chr4.4:6473734-6473753 | None:intergenic | 25.0% |
| ! | GCATATTTATTGCAGATATA+TGG | + | chr4.4:6474351-6474370 | None:intergenic | 25.0% |
| ! | TCAAAATCTATATCCAGAAA+AGG | + | chr4.4:6471061-6471080 | None:intergenic | 25.0% |
| ! | TCAATATATGTGTTGAGTAA+AGG | + | chr4.4:6471303-6471322 | None:intergenic | 25.0% |
| ! | TGAAACTGTTAAGTTTAATC+AGG | - | chr4.4:6470520-6470539 | MS.gene030426:intron | 25.0% |
| ! | TTATCAAAAGCTAGTATCTT+TGG | - | chr4.4:6470719-6470738 | MS.gene030426:intron | 25.0% |
| ! | TTATCAAGCATATTTCTCAA+AGG | + | chr4.4:6473698-6473717 | None:intergenic | 25.0% |
| !! | ATAGTGATAAAAGGTATATG+GGG | - | chr4.4:6471013-6471032 | MS.gene030426:intron | 25.0% |
| !! | ATTCAGTTTTACCTCATAAT+CGG | + | chr4.4:6472990-6473009 | None:intergenic | 25.0% |
| !! | GAATTTTTGATATGGTTTCT+TGG | - | chr4.4:6470678-6470697 | MS.gene030426:intron | 25.0% |
| !! | GGTAAATTTTCAAATCCTTT+TGG | - | chr4.4:6473657-6473676 | MS.gene030426:intron | 25.0% |
| !! | TCATGATGGAAATTGTAAAT+GGG | - | chr4.4:6470484-6470503 | MS.gene030426:intron | 25.0% |
| !! | TTCATGATGGAAATTGTAAA+TGG | - | chr4.4:6470483-6470502 | MS.gene030426:intron | 25.0% |
| !! | TTTTTCTTTCTAGATTTCAC+AGG | - | chr4.4:6471416-6471435 | MS.gene030426:intron | 25.0% |
| !!! | AAGGTTTTATCATGAATTGT+TGG | - | chr4.4:6474301-6474320 | MS.gene030426:CDS | 25.0% |
| !!! | ACTTAAGTTAGTTCTATCAA+AGG | + | chr4.4:6473787-6473806 | None:intergenic | 25.0% |
| !!! | AGTATTAGCATTTTTAAGTC+TGG | + | chr4.4:6472792-6472811 | None:intergenic | 25.0% |
| !!! | AGTTCTGATTTTTTGCTAAA+TGG | - | chr4.4:6470961-6470980 | MS.gene030426:intron | 25.0% |
| !!! | CTTAAGTTAGTTCTATCAAA+GGG | + | chr4.4:6473786-6473805 | None:intergenic | 25.0% |
| !!! | TCTTTTTGTTGTTGACTTTT+TGG | - | chr4.4:6470625-6470644 | MS.gene030426:CDS | 25.0% |
| AAATTTATCAGTGTCACGAT+TGG | + | chr4.4:6474601-6474620 | None:intergenic | 30.0% | |
| ACAAGAATTGAATCATGAGA+AGG | - | chr4.4:6472076-6472095 | MS.gene030426:CDS | 30.0% | |
| ACAATTTCCATCATGAACTA+TGG | + | chr4.4:6470480-6470499 | None:intergenic | 30.0% | |
| ACTAAAAACTCCCATGATTT+AGG | - | chr4.4:6472239-6472258 | MS.gene030426:CDS | 30.0% | |
| ACTTATGAAGAAATCACTTG+GGG | - | chr4.4:6473240-6473259 | MS.gene030426:CDS | 30.0% | |
| AGAACTTCAATCCAAAATTG+AGG | - | chr4.4:6473927-6473946 | MS.gene030426:intron | 30.0% | |
| AGAATGATGAAGAAATGTGA+AGG | + | chr4.4:6470250-6470269 | None:intergenic | 30.0% | |
| ATATGTGTTCTTAATGCCAT+AGG | + | chr4.4:6474565-6474584 | None:intergenic | 30.0% | |
| ATGTATATCGGAAGAAAATG+GGG | - | chr4.4:6474475-6474494 | MS.gene030426:intron | 30.0% | |
| CACTAAATTTGCCATTCTTA+GGG | + | chr4.4:6470547-6470566 | None:intergenic | 30.0% | |
| CATAAAAACAGTTGAGTATG+AGG | + | chr4.4:6471089-6471108 | None:intergenic | 30.0% | |
| CATCAATAAGAGAATGTTTC+AGG | + | chr4.4:6473456-6473475 | None:intergenic | 30.0% | |
| CATGTATATCGGAAGAAAAT+GGG | - | chr4.4:6474474-6474493 | MS.gene030426:intron | 30.0% | |
| CCAAAATTTCAACAACTTGA+AGG | + | chr4.4:6470878-6470897 | None:intergenic | 30.0% | |
| CCAAACAAAAACTCAATGAT+AGG | - | chr4.4:6471165-6471184 | MS.gene030426:CDS | 30.0% | |
| CCATCTTATATGCAAATTCA+TGG | + | chr4.4:6472475-6472494 | None:intergenic | 30.0% | |
| CCATGAATTTGCATATAAGA+TGG | - | chr4.4:6472472-6472491 | MS.gene030426:CDS | 30.0% | |
| CTAAAAACTCCCATGATTTA+GGG | - | chr4.4:6472240-6472259 | MS.gene030426:CDS | 30.0% | |
| CTTACTTGAGCAAAAAATCA+CGG | - | chr4.4:6472349-6472368 | MS.gene030426:CDS | 30.0% | |
| GAAAGAAAGAGACAAATCAA+TGG | - | chr4.4:6474771-6474790 | MS.gene030426:intron | 30.0% | |
| GAACTTATGAAGAAATCACT+TGG | - | chr4.4:6473238-6473257 | MS.gene030426:CDS | 30.0% | |
| GTTAATTAACATTTGCAGAG+AGG | - | chr4.4:6471124-6471143 | MS.gene030426:CDS | 30.0% | |
| GTTTCAAAGTCATTTATACC+AGG | + | chr4.4:6472554-6472573 | None:intergenic | 30.0% | |
| TACATTTGATGCAAATGAGA+CGG | - | chr4.4:6472862-6472881 | MS.gene030426:CDS | 30.0% | |
| TATATCTCCAGTGCTTAAAT+AGG | + | chr4.4:6471201-6471220 | None:intergenic | 30.0% | |
| TATGTGTTCTTAATGCCATA+GGG | + | chr4.4:6474564-6474583 | None:intergenic | 30.0% | |
| TATTTCTTAGTCCAAGTTCT+CGG | + | chr4.4:6471554-6471573 | None:intergenic | 30.0% | |
| TCACTAAATTTGCCATTCTT+AGG | + | chr4.4:6470548-6470567 | None:intergenic | 30.0% | |
| TCATGTATATCGGAAGAAAA+TGG | - | chr4.4:6474473-6474492 | MS.gene030426:intron | 30.0% | |
| TGTACAAATTGGTATACCTT+TGG | + | chr4.4:6473997-6474016 | None:intergenic | 30.0% | |
| TGTAGAGAATGAAAAACTCA+AGG | - | chr4.4:6471797-6471816 | MS.gene030426:CDS | 30.0% | |
| TGTGAACTGAAGTTATTGAA+TGG | - | chr4.4:6474620-6474639 | MS.gene030426:CDS | 30.0% | |
| TTAACAATGGGAATAGAAGA+AGG | + | chr4.4:6471369-6471388 | None:intergenic | 30.0% | |
| ! | AGAAATCTTAAGTTCTGACT+TGG | - | chr4.4:6473216-6473235 | MS.gene030426:CDS | 30.0% |
| ! | AGTTTTACTACTACAAGTGA+CGG | - | chr4.4:6474407-6474426 | MS.gene030426:intron | 30.0% |
| ! | CCTATCATTGAGTTTTTGTT+TGG | + | chr4.4:6471168-6471187 | None:intergenic | 30.0% |
| ! | TACAATTGCTTTGTTGAAGA+AGG | - | chr4.4:6473315-6473334 | MS.gene030426:CDS | 30.0% |
| ! | TTGATTATTTGACCCTTTTC+TGG | - | chr4.4:6471045-6471064 | MS.gene030426:intron | 30.0% |
| !! | AAAGTGATTCTTCTGAAGTA+AGG | - | chr4.4:6471234-6471253 | MS.gene030426:intron | 30.0% |
| !! | ATACCAGTAATGGATAGTAA+TGG | - | chr4.4:6474706-6474725 | MS.gene030426:intron | 30.0% |
| !! | CAAAATGATTTGCTTATGAC+AGG | - | chr4.4:6473840-6473859 | MS.gene030426:CDS | 30.0% |
| !!! | AATGGTTTTAGTCTCAATGT+AGG | + | chr4.4:6473557-6473576 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGGTTAGTTGGAA+TGG | + | chr4.4:6473575-6473594 | None:intergenic | 30.0% |
| !!! | CCTTCAAGTTGTTGAAATTT+TGG | - | chr4.4:6470875-6470894 | MS.gene030426:intron | 30.0% |
| !!! | GAAGAATTGAAGCACTTTTT+TGG | + | chr4.4:6473588-6473607 | None:intergenic | 30.0% |
| !!! | GGACTATGAAATTTTGAAAC+AGG | - | chr4.4:6472445-6472464 | MS.gene030426:CDS | 30.0% |
| !!! | TGATTTTTTGCTAAATGGAC+AGG | - | chr4.4:6470966-6470985 | MS.gene030426:intron | 30.0% |
| !!! | TTTCTGATTTTCAAGTTGCA+TGG | + | chr4.4:6473083-6473102 | None:intergenic | 30.0% |
| AAAATCAAAGGAGACTGCTT+TGG | - | chr4.4:6473870-6473889 | MS.gene030426:CDS | 35.0% | |
| AAAATGCTAATACTGCAGAG+AGG | - | chr4.4:6472798-6472817 | MS.gene030426:CDS | 35.0% | |
| AAATAGGATGATGCATCTCA+AGG | - | chr4.4:6473363-6473382 | MS.gene030426:CDS | 35.0% | |
| AACTCAATGATAGGAGCTTA+AGG | - | chr4.4:6471174-6471193 | MS.gene030426:CDS | 35.0% | |
| AATGAGTCTCAAATTTGCAG+AGG | - | chr4.4:6474831-6474850 | MS.gene030426:intron | 35.0% | |
| AATGCCATAGGGAAGAAAAA+AGG | + | chr4.4:6474553-6474572 | None:intergenic | 35.0% | |
| AATTAACATTTGCAGAGAGG+AGG | - | chr4.4:6471127-6471146 | MS.gene030426:CDS | 35.0% | |
| ACAGGACCTGATAAAATCAA+AGG | - | chr4.4:6473858-6473877 | MS.gene030426:CDS | 35.0% | |
| ACATGGAACTTCAAACTCTT+CGG | - | chr4.4:6471859-6471878 | MS.gene030426:CDS | 35.0% | |
| AGAAGCAGAAATACCAGTAA+TGG | - | chr4.4:6474696-6474715 | MS.gene030426:intron | 35.0% | |
| AGACATTTCTCCCTAAATCA+TGG | + | chr4.4:6472253-6472272 | None:intergenic | 35.0% | |
| AGACGATGAACAGAAAGAAT+TGG | - | chr4.4:6472286-6472305 | MS.gene030426:CDS | 35.0% | |
| AGCATCAGCTTCTTCATATT+TGG | - | chr4.4:6473894-6473913 | MS.gene030426:CDS | 35.0% | |
| AGCTTCTTCATATTTGGAGA+AGG | - | chr4.4:6473900-6473919 | MS.gene030426:CDS | 35.0% | |
| ATCAGAGATCATCACATTTC+CGG | - | chr4.4:6471676-6471695 | MS.gene030426:CDS | 35.0% | |
| ATCCGAATGAGAATTCTTGA+TGG | + | chr4.4:6470807-6470826 | None:intergenic | 35.0% | |
| ATCGTAAAGGAAAGCAAAAG+AGG | - | chr4.4:6471888-6471907 | MS.gene030426:CDS | 35.0% | |
| ATGCCATAGGGAAGAAAAAA+GGG | + | chr4.4:6474552-6474571 | None:intergenic | 35.0% | |
| ATGGTGAGATAGAGATGTAT+AGG | - | chr4.4:6472378-6472397 | MS.gene030426:CDS | 35.0% | |
| ATTACAATGTCAAGTTCCGA+TGG | - | chr4.4:6471507-6471526 | MS.gene030426:CDS | 35.0% | |
| ATTCAGTTAAAACGTTGCTG+AGG | + | chr4.4:6474741-6474760 | None:intergenic | 35.0% | |
| ATTTCTTAGTCCAAGTTCTC+GGG | + | chr4.4:6471553-6471572 | None:intergenic | 35.0% | |
| CAAAAAATCACGGATCTCTA+TGG | - | chr4.4:6472359-6472378 | MS.gene030426:CDS | 35.0% | |
| CATTGTTATGTGCTTCAAAC+AGG | - | chr4.4:6474370-6474389 | MS.gene030426:intron | 35.0% | |
| CTCATTTGCATCAAATGTAG+TGG | + | chr4.4:6472861-6472880 | None:intergenic | 35.0% | |
| CTTGCTTGGTATCTTGATTA+AGG | - | chr4.4:6474282-6474301 | MS.gene030426:CDS | 35.0% | |
| GAAGTAAGGTTTCACTCATT+GGG | - | chr4.4:6471248-6471267 | MS.gene030426:intron | 35.0% | |
| GACATTTCTCCCTAAATCAT+GGG | + | chr4.4:6472252-6472271 | None:intergenic | 35.0% | |
| GCTTTCTCTAATCTTGTAGT+TGG | + | chr4.4:6470458-6470477 | None:intergenic | 35.0% | |
| GGATGAATTCTCAAATTCTC+TGG | - | chr4.4:6472613-6472632 | MS.gene030426:CDS | 35.0% | |
| GGCTTCAAGAAGAATTCAAA+AGG | - | chr4.4:6472819-6472838 | MS.gene030426:CDS | 35.0% | |
| TAACGATGAACTGAAGAAGA+AGG | - | chr4.4:6473519-6473538 | MS.gene030426:CDS | 35.0% | |
| TAAGTCAGCTTCAAATCCTT+GGG | + | chr4.4:6472699-6472718 | None:intergenic | 35.0% | |
| TATCAGTCATCAATGCACTT+TGG | + | chr4.4:6474083-6474102 | None:intergenic | 35.0% | |
| TCAAACACTAACATGCAAGA+CGG | + | chr4.4:6470831-6470850 | None:intergenic | 35.0% | |
| TCAAAGTCATTTATACCAGG+AGG | + | chr4.4:6472551-6472570 | None:intergenic | 35.0% | |
| TCAATCCAAAATTGAGGAAC+TGG | - | chr4.4:6473933-6473952 | MS.gene030426:intron | 35.0% | |
| TCCCATCAAGAATTCTCATT+CGG | - | chr4.4:6470802-6470821 | MS.gene030426:intron | 35.0% | |
| TCCGAATGAGAATTCTTGAT+GGG | + | chr4.4:6470806-6470825 | None:intergenic | 35.0% | |
| TCGTAAAGGAAAGCAAAAGA+GGG | - | chr4.4:6471889-6471908 | MS.gene030426:CDS | 35.0% | |
| TCTATAGTTCCTGGAGATAA+TGG | - | chr4.4:6470428-6470447 | MS.gene030426:intron | 35.0% | |
| TCTTCAGTTCATCGTTAAGA+TGG | + | chr4.4:6473516-6473535 | None:intergenic | 35.0% | |
| TCTTCGGAAACAAATCGTAA+AGG | - | chr4.4:6471875-6471894 | MS.gene030426:CDS | 35.0% | |
| TGAAACACATATCCAGAATC+TGG | - | chr4.4:6472568-6472587 | MS.gene030426:CDS | 35.0% | |
| TGAAGTAAGGTTTCACTCAT+TGG | - | chr4.4:6471247-6471266 | MS.gene030426:intron | 35.0% | |
| TGAGAATGAAAAGCTTACAG+TGG | - | chr4.4:6473159-6473178 | MS.gene030426:CDS | 35.0% | |
| TTAAGGACCTATTTAAGCAC+TGG | - | chr4.4:6471191-6471210 | MS.gene030426:CDS | 35.0% | |
| TTCGTTTGCGAAAAGATTTG+AGG | + | chr4.4:6471983-6472002 | None:intergenic | 35.0% | |
| TTGCCATTACTATCCATTAC+TGG | + | chr4.4:6474712-6474731 | None:intergenic | 35.0% | |
| TTTAATCAGGACCCTAAGAA+TGG | - | chr4.4:6470533-6470552 | MS.gene030426:intron | 35.0% | |
| ! | AAGTGTTGCGATGTACAAAT+TGG | + | chr4.4:6474008-6474027 | None:intergenic | 35.0% |
| ! | CAAATCTTTTCGCAAACGAA+GGG | - | chr4.4:6471983-6472002 | MS.gene030426:CDS | 35.0% |
| ! | TATGGATCATTTTCTGTCCA+TGG | - | chr4.4:6474649-6474668 | MS.gene030426:CDS | 35.0% |
| ! | TCAAATCTTTTCGCAAACGA+AGG | - | chr4.4:6471982-6472001 | MS.gene030426:CDS | 35.0% |
| ! | TCTCAGATCTGTCATTTCTT+TGG | + | chr4.4:6473617-6473636 | None:intergenic | 35.0% |
| ! | TGAAAATCAGAAAAAGCACG+AGG | - | chr4.4:6473090-6473109 | MS.gene030426:CDS | 35.0% |
| ! | TTTTAGCAACTGAATCTCCT+CGG | + | chr4.4:6473137-6473156 | None:intergenic | 35.0% |
| !! | AGAATTGGATGAGCTTGTTA+AGG | - | chr4.4:6472301-6472320 | MS.gene030426:CDS | 35.0% |
| !! | CAGTCTCCTTTGATTTTATC+AGG | + | chr4.4:6473867-6473886 | None:intergenic | 35.0% |
| !! | GTAATGGATAGTAATGGCAA+TGG | - | chr4.4:6474712-6474731 | MS.gene030426:intron | 35.0% |
| !! | TCTTGGTTCTCTTTTGTGTA+GGG | - | chr4.4:6470695-6470714 | MS.gene030426:intron | 35.0% |
| !! | TTAAGCACTGGAGATATAGA+TGG | - | chr4.4:6471203-6471222 | MS.gene030426:intron | 35.0% |
| !! | TTCTTGGTTCTCTTTTGTGT+AGG | - | chr4.4:6470694-6470713 | MS.gene030426:intron | 35.0% |
| !!! | GAAGCACTTTTTTGGTTAGT+TGG | + | chr4.4:6473580-6473599 | None:intergenic | 35.0% |
| !!! | GACAACTTTTGCTCTAAGAA+AGG | + | chr4.4:6471336-6471355 | None:intergenic | 35.0% |
| !!! | TCAAATCCTTTTGGTTTGAG+CGG | - | chr4.4:6473666-6473685 | MS.gene030426:intron | 35.0% |
| !!! | TGAGTTGATTTTCCAGATTC+TGG | + | chr4.4:6472583-6472602 | None:intergenic | 35.0% |
| !!! | TGTCATGGCATCTTTTTTGT+TGG | + | chr4.4:6473020-6473039 | None:intergenic | 35.0% |
| AAGGATGAAGAGGAGAAAGT+GGG | - | chr4.4:6473382-6473401 | MS.gene030426:CDS | 40.0% | |
| AAGTCATTTATACCAGGAGG+AGG | + | chr4.4:6472548-6472567 | None:intergenic | 40.0% | |
| AGAGCTTCAAAATCTTGCTG+TGG | - | chr4.4:6471626-6471645 | MS.gene030426:CDS | 40.0% | |
| AGATGAGTTAGAGATGCAGA+TGG | - | chr4.4:6472409-6472428 | MS.gene030426:CDS | 40.0% | |
| AGCATCAACCCTACAACAAA+TGG | - | chr4.4:6471576-6471595 | MS.gene030426:CDS | 40.0% | |
| AGTATGGACGGTTCAATACA+TGG | - | chr4.4:6471729-6471748 | MS.gene030426:CDS | 40.0% | |
| ATCAGTCAAAGCCGATTATG+AGG | - | chr4.4:6472976-6472995 | MS.gene030426:CDS | 40.0% | |
| ATCCAAAATTGAGGAACTGG+AGG | - | chr4.4:6473936-6473955 | MS.gene030426:intron | 40.0% | |
| CAAAAGGCTATCAATGCAGA+TGG | - | chr4.4:6472835-6472854 | MS.gene030426:CDS | 40.0% | |
| CAATGGGAATAGAAGAAGGA+TGG | + | chr4.4:6471365-6471384 | None:intergenic | 40.0% | |
| CTAAGTCAGCTTCAAATCCT+TGG | + | chr4.4:6472700-6472719 | None:intergenic | 40.0% | |
| CTCAAATTTGCAGAGGTAGA+AGG | - | chr4.4:6474838-6474857 | MS.gene030426:intron | 40.0% | |
| GACACATGACAAAGTTAAGC+AGG | - | chr4.4:6472727-6472746 | MS.gene030426:CDS | 40.0% | |
| GAGAAAGCCATAGTTCATGA+TGG | - | chr4.4:6470470-6470489 | MS.gene030426:intron | 40.0% | |
| GGAAGTTATCAGCTTGAAAG+AGG | - | chr4.4:6471926-6471945 | MS.gene030426:CDS | 40.0% | |
| GGTCACTTGATGAGCTAAAT+AGG | - | chr4.4:6473347-6473366 | MS.gene030426:CDS | 40.0% | |
| TAAGAAGCCTCAAGAATGCT+AGG | - | chr4.4:6474887-6474906 | MS.gene030426:CDS | 40.0% | |
| TCAGAGATCATCACATTTCC+GGG | - | chr4.4:6471677-6471696 | MS.gene030426:CDS | 40.0% | |
| TCAGATGCAACAGATGTTGT+TGG | - | chr4.4:6473042-6473061 | MS.gene030426:CDS | 40.0% | |
| TGTTGAAGAAGGAAGCAGAA+CGG | - | chr4.4:6473326-6473345 | MS.gene030426:CDS | 40.0% | |
| TTCAGAACTTGGTCTGAGTA+TGG | - | chr4.4:6471713-6471732 | MS.gene030426:CDS | 40.0% | |
| TTGGTACTCTCTATAGTTCC+TGG | - | chr4.4:6470419-6470438 | MS.gene030426:intron | 40.0% | |
| TTTCTTAGTCCAAGTTCTCG+GGG | + | chr4.4:6471552-6471571 | None:intergenic | 40.0% | |
| ! | AAAAAGCACGAGGAACAAGT+TGG | - | chr4.4:6473100-6473119 | MS.gene030426:CDS | 40.0% |
| ! | CTTCAAAATCTTGCTGTGGA+TGG | - | chr4.4:6471630-6471649 | MS.gene030426:CDS | 40.0% |
| ! | GAATTGGTCTCGAGATAAGT+TGG | + | chr4.4:6470301-6470320 | None:intergenic | 40.0% |
| ! | GGTATTTCTGCTTCTTTCTC+TGG | + | chr4.4:6474691-6474710 | None:intergenic | 40.0% |
| ! | TAATTTCAGGTGCTGCAATC+TGG | - | chr4.4:6470386-6470405 | MS.gene030426:intron | 40.0% |
| !! | AAGGAGCACCATTTGTTGTA+GGG | + | chr4.4:6471587-6471606 | None:intergenic | 40.0% |
| !! | TGAACTAGTTCTTGCTGTTC+AGG | - | chr4.4:6472151-6472170 | MS.gene030426:CDS | 40.0% |
| !!! | GATTTTGAAGCTCTGAAGAG+TGG | + | chr4.4:6471620-6471639 | None:intergenic | 40.0% |
| !!! | GTTGGTTTTCCATTATCTCC+AGG | + | chr4.4:6470440-6470459 | None:intergenic | 40.0% |
| AAAGGAAAGCAAAAGAGGGC+AGG | - | chr4.4:6471893-6471912 | MS.gene030426:CDS | 45.0% | |
| AAGCCTCAAGAATGCTAGGA+AGG | - | chr4.4:6474891-6474910 | MS.gene030426:CDS | 45.0% | |
| ACCTATCCGCTCAAACCAAA+AGG | + | chr4.4:6473675-6473694 | None:intergenic | 45.0% | |
| AGCCTCAAGAATGCTAGGAA+GGG | - | chr4.4:6474892-6474911 | MS.gene030426:CDS | 45.0% | |
| AGTAGCAGATCACAGTTGGA+AGG | - | chr4.4:6472020-6472039 | MS.gene030426:CDS | 45.0% | |
| AGTGAGTAGCAGATCACAGT+TGG | - | chr4.4:6472016-6472035 | MS.gene030426:CDS | 45.0% | |
| ATCAAGTCCAGAGCTTCCAT+CGG | + | chr4.4:6471526-6471545 | None:intergenic | 45.0% | |
| ATCGGAAGAAAATGGGGTTG+TGG | - | chr4.4:6474481-6474500 | MS.gene030426:intron | 45.0% | |
| ATCTCACTCTCACTCAGGTA+CGG | - | chr4.4:6470219-6470238 | MS.gene030426:CDS | 45.0% | |
| CAAGGATGAAGAGGAGAAAG+TGG | - | chr4.4:6473381-6473400 | MS.gene030426:CDS | 45.0% | |
| CAGTCATCAATGCACTTTGG+TGG | + | chr4.4:6474080-6474099 | None:intergenic | 45.0% | |
| CTCAAGTAAGTGTGTCTCCT+TGG | + | chr4.4:6472339-6472358 | None:intergenic | 45.0% | |
| CTGTTGCATCTGAACTGTCA+TGG | + | chr4.4:6473035-6473054 | None:intergenic | 45.0% | |
| GAACTTGGTCTGAGTATGGA+CGG | - | chr4.4:6471717-6471736 | MS.gene030426:CDS | 45.0% | |
| GAGATCTGACAGTTGAGTGA+TGG | - | chr4.4:6473809-6473828 | MS.gene030426:intron | 45.0% | |
| GATGCATCTCAAGGATGAAG+AGG | - | chr4.4:6473372-6473391 | MS.gene030426:CDS | 45.0% | |
| GCAATCTGGTGTGGATTCTT+TGG | - | chr4.4:6470400-6470419 | MS.gene030426:intron | 45.0% | |
| GCTGATTGTAGGACATCTAG+TGG | - | chr4.4:6471477-6471496 | MS.gene030426:CDS | 45.0% | |
| GTGCTTCAAACAGGTTGTTG+CGG | - | chr4.4:6474379-6474398 | MS.gene030426:intron | 45.0% | |
| TAACATTTGCAGAGAGGAGG+AGG | - | chr4.4:6471130-6471149 | MS.gene030426:CDS | 45.0% | |
| TAAGGATCAAAGCAGTGCCA+AGG | - | chr4.4:6472319-6472338 | MS.gene030426:CDS | 45.0% | |
| TCCAGCTCTTGTGTTTGCAT+TGG | + | chr4.4:6471451-6471470 | None:intergenic | 45.0% | |
| TCTGCTCTAACATTGCATCG+AGG | + | chr4.4:6472178-6472197 | None:intergenic | 45.0% | |
| TTTCCATCTCACTCTCACTC+AGG | - | chr4.4:6470214-6470233 | MS.gene030426:CDS | 45.0% | |
| ! | GTCCTCCAGTTCCTCAATTT+TGG | + | chr4.4:6473941-6473960 | None:intergenic | 45.0% |
| ! | TTTTCGCAAACGAAGGGATG+AGG | - | chr4.4:6471989-6472008 | MS.gene030426:CDS | 45.0% |
| !! | GAAGGAGCACCATTTGTTGT+AGG | + | chr4.4:6471588-6471607 | None:intergenic | 45.0% |
| !! | TCAGAGCATTGCTTTGCCAA+AGG | - | chr4.4:6473978-6473997 | MS.gene030426:intron | 45.0% |
| !! | TTGTGGTGTCATCAGTCAAG+AGG | - | chr4.4:6474498-6474517 | MS.gene030426:CDS | 45.0% |
| !!! | ACGCCCTTTTTTCTTCCCTA+TGG | - | chr4.4:6474546-6474565 | MS.gene030426:CDS | 45.0% |
| !!! | TCCTTTTGGTTTGAGCGGAT+AGG | - | chr4.4:6473671-6473690 | MS.gene030426:intron | 45.0% |
| AGCAGATCACAGTTGGAAGG+TGG | - | chr4.4:6472023-6472042 | MS.gene030426:CDS | 50.0% | |
| AGCCCTTCCTAGCATTCTTG+AGG | + | chr4.4:6474897-6474916 | None:intergenic | 50.0% | |
| AGGTTTCACTCATTGGGCCA+AGG | - | chr4.4:6471254-6471273 | MS.gene030426:intron | 50.0% | |
| ATGCAAATGAGACGGCTACC+AGG | - | chr4.4:6472870-6472889 | MS.gene030426:CDS | 50.0% | |
| ATGGGAACTTTCCCGAGGAA+GGG | + | chr4.4:6471766-6471785 | None:intergenic | 50.0% | |
| CAAAGCTTCCTCAGCTCGAA+TGG | + | chr4.4:6472762-6472781 | None:intergenic | 50.0% | |
| CAGATCACAGTTGGAAGGTG+GGG | - | chr4.4:6472025-6472044 | MS.gene030426:CDS | 50.0% | |
| CCAGTTCCTCCTCTAACTTG+CGG | + | chr4.4:6472667-6472686 | None:intergenic | 50.0% | |
| CTTGATACTCCCCGAGAACT+TGG | - | chr4.4:6471540-6471559 | MS.gene030426:CDS | 50.0% | |
| GAACCAGATCCGCAAGTTAG+AGG | - | chr4.4:6472655-6472674 | MS.gene030426:CDS | 50.0% | |
| GAACTGGAGAAACAAGCCCA+AGG | - | chr4.4:6472680-6472699 | MS.gene030426:CDS | 50.0% | |
| GCAAATGTGCATGACTGCCA+TGG | + | chr4.4:6474669-6474688 | None:intergenic | 50.0% | |
| GCAGATCACAGTTGGAAGGT+GGG | - | chr4.4:6472024-6472043 | MS.gene030426:CDS | 50.0% | |
| GCCAATGCAAACACAAGAGC+TGG | - | chr4.4:6471447-6471466 | MS.gene030426:CDS | 50.0% | |
| GTACCTGAGTGAGAGTGAGA+TGG | + | chr4.4:6470220-6470239 | None:intergenic | 50.0% | |
| TCAAGTTCCGATGGAAGCTC+TGG | - | chr4.4:6471516-6471535 | MS.gene030426:CDS | 50.0% | |
| TCGTGTGCAGAAGAGACTAC+TGG | - | chr4.4:6472919-6472938 | MS.gene030426:CDS | 50.0% | |
| TGAGGAACTGGAGGACAAAG+TGG | - | chr4.4:6473945-6473964 | MS.gene030426:intron | 50.0% | |
| TGTGCAGAAGAGACTACTGG+AGG | - | chr4.4:6472922-6472941 | MS.gene030426:CDS | 50.0% | |
| ! | CAAGGCTGAAGTTGCTGCTT+TGG | - | chr4.4:6471815-6471834 | MS.gene030426:CDS | 50.0% |
| ! | CTGGTTCTCAAGAGACTCGA+TGG | + | chr4.4:6472642-6472661 | None:intergenic | 50.0% |
| ! | TGCTCAGCTGGTTCAGAACT+TGG | - | chr4.4:6471702-6471721 | MS.gene030426:CDS | 50.0% |
| !! | CTGGACTGAGTGCTGATTGT+AGG | - | chr4.4:6471466-6471485 | MS.gene030426:CDS | 50.0% |
| !! | TTGAAGCTCTGAAGAGTGGC+TGG | + | chr4.4:6471616-6471635 | None:intergenic | 50.0% |
| AGTTGGCAGGGATTTCTCCG+AGG | - | chr4.4:6473117-6473136 | MS.gene030426:CDS | 55.0% | |
| CCAGATCCGCAAGTTAGAGG+AGG | - | chr4.4:6472658-6472677 | MS.gene030426:CDS | 55.0% | |
| CCGCAAGTTAGAGGAGGAAC+TGG | - | chr4.4:6472664-6472683 | MS.gene030426:CDS | 55.0% | |
| CTCTACATCCGCTGCCTGAT+GGG | + | chr4.4:6471784-6471803 | None:intergenic | 55.0% | |
| CTCTCAAGATGCCCTTCCTC+GGG | - | chr4.4:6471752-6471771 | MS.gene030426:CDS | 55.0% | |
| GAAGAGTGGCTGGTGACTGA+AGG | + | chr4.4:6471606-6471625 | None:intergenic | 55.0% | |
| GAATGCTCTTCTCCTCCTCC+TGG | - | chr4.4:6472533-6472552 | MS.gene030426:CDS | 55.0% | |
| GATGGGAACTTTCCCGAGGA+AGG | + | chr4.4:6471767-6471786 | None:intergenic | 55.0% | |
| GCAAAGAGCCATTCGAGCTG+AGG | - | chr4.4:6472751-6472770 | MS.gene030426:CDS | 55.0% | |
| GCAGGTGGATGTGTCAGACA+TGG | - | chr4.4:6471842-6471861 | MS.gene030426:CDS | 55.0% | |
| GCTCTCAAGATGCCCTTCCT+CGG | - | chr4.4:6471751-6471770 | MS.gene030426:CDS | 55.0% | |
| GGAAAGTTCCCATCAGGCAG+CGG | - | chr4.4:6471773-6471792 | MS.gene030426:CDS | 55.0% | |
| GGAACTGGAGGACAAAGTGG+AGG | - | chr4.4:6473948-6473967 | MS.gene030426:intron | 55.0% | |
| TCCTCGGGAAAGTTCCCATC+AGG | - | chr4.4:6471767-6471786 | MS.gene030426:CDS | 55.0% | |
| TCTCTACATCCGCTGCCTGA+TGG | + | chr4.4:6471785-6471804 | None:intergenic | 55.0% | |
| ! | AGCACGAGGAACAAGTTGGC+AGG | - | chr4.4:6473104-6473123 | MS.gene030426:CDS | 55.0% |
| ! | CCTCCTCTAACTTGCGGATC+TGG | + | chr4.4:6472661-6472680 | None:intergenic | 55.0% |
| ! | GCACGAGGAACAAGTTGGCA+GGG | - | chr4.4:6473105-6473124 | MS.gene030426:CDS | 55.0% |
| ! | TCAGGTGCTGCAATCTGGTG+TGG | - | chr4.4:6470391-6470410 | MS.gene030426:intron | 55.0% |
| !! | CTGAAGTTGCTGCTTTGGCC+AGG | - | chr4.4:6471820-6471839 | MS.gene030426:CDS | 55.0% |
| AAGAGGGCAGGAGCTCGCAA+AGG | - | chr4.4:6471905-6471924 | MS.gene030426:CDS | 60.0% | |
| CATTTCCGGGACTGCTCAGC+TGG | - | chr4.4:6471690-6471709 | MS.gene030426:CDS | 60.0% | |
| CTGAACCAGCTGAGCAGTCC+CGG | + | chr4.4:6471698-6471717 | None:intergenic | 60.0% | |
| GCAGATGGAGCAGCTTGCAC+TGG | - | chr4.4:6472424-6472443 | MS.gene030426:CDS | 60.0% | |
| GCCTGATGGGAACTTTCCCG+AGG | + | chr4.4:6471771-6471790 | None:intergenic | 60.0% | |
| GTCTGACACATCCACCTGCC+TGG | + | chr4.4:6471841-6471860 | None:intergenic | 60.0% | |
| TGCTTCTGTCAGCGCTCTCC+TGG | + | chr4.4:6472891-6472910 | None:intergenic | 60.0% | |
| !! | AGTTGCTGCTTTGGCCAGGC+AGG | - | chr4.4:6471824-6471843 | MS.gene030426:CDS | 60.0% |
| !! | TGCTGCTTTGGCCAGGCAGG+TGG | - | chr4.4:6471827-6471846 | MS.gene030426:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 6470161 | 6474918 | 6470161 | ID=MS.gene030426 |
| chr4.4 | mRNA | 6470161 | 6474918 | 6470161 | ID=MS.gene030426.t1;Parent=MS.gene030426 |
| chr4.4 | exon | 6474844 | 6474918 | 6474844 | ID=MS.gene030426.t1.exon1;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6474844 | 6474918 | 6474844 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| chr4.4 | exon | 6474484 | 6474684 | 6474484 | ID=MS.gene030426.t1.exon2;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6474484 | 6474684 | 6474484 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| chr4.4 | exon | 6474241 | 6474363 | 6474241 | ID=MS.gene030426.t1.exon3;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6474241 | 6474363 | 6474241 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| chr4.4 | exon | 6474054 | 6474091 | 6474054 | ID=MS.gene030426.t1.exon4;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6474054 | 6474091 | 6474054 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| chr4.4 | exon | 6473829 | 6473937 | 6473829 | ID=MS.gene030426.t1.exon5;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6473829 | 6473937 | 6473829 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| chr4.4 | exon | 6471422 | 6473650 | 6471422 | ID=MS.gene030426.t1.exon6;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6471422 | 6473650 | 6471422 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| chr4.4 | exon | 6471080 | 6471217 | 6471080 | ID=MS.gene030426.t1.exon7;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6471080 | 6471217 | 6471080 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| chr4.4 | exon | 6470560 | 6470687 | 6470560 | ID=MS.gene030426.t1.exon8;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6470560 | 6470687 | 6470560 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| chr4.4 | exon | 6470161 | 6470404 | 6470161 | ID=MS.gene030426.t1.exon9;Parent=MS.gene030426.t1 |
| chr4.4 | CDS | 6470161 | 6470404 | 6470161 | ID=cds.MS.gene030426.t1;Parent=MS.gene030426.t1 |
| Gene Sequence |
| Protein sequence |
