Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072801.t1 | XP_003611115.1 | 90.8 | 1062 | 98 | 0 | 1 | 1062 | 1 | 1062 | 0.00E+00 | 1520.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072801.t1 | G7KDD8 | 90.8 | 1062 | 98 | 0 | 1 | 1062 | 1 | 1062 | 0.0e+00 | 1520.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050376 | MS.gene072801 | 0.896141 | 4.90E-76 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene072801 | MS.gene48616 | PPI |
| MS.gene033776 | MS.gene072801 | PPI |
| MS.gene93913 | MS.gene072801 | PPI |
| MS.gene072801 | MS.gene35346 | PPI |
| MS.gene49082 | MS.gene072801 | PPI |
| MS.gene006300 | MS.gene072801 | PPI |
| MS.gene072801 | MS.gene93911 | PPI |
| MS.gene34485 | MS.gene072801 | PPI |
| MS.gene072801 | MS.gene94636 | PPI |
| MS.gene00106 | MS.gene072801 | PPI |
| MS.gene94379 | MS.gene072801 | PPI |
| MS.gene072801 | MS.gene043158 | PPI |
| MS.gene55940 | MS.gene072801 | PPI |
| MS.gene41427 | MS.gene072801 | PPI |
| MS.gene072801 | MS.gene91501 | PPI |
| MS.gene43975 | MS.gene072801 | PPI |
| MS.gene036437 | MS.gene072801 | PPI |
| MS.gene073110 | MS.gene072801 | PPI |
| MS.gene072801 | MS.gene005105 | PPI |
| MS.gene67841 | MS.gene072801 | PPI |
| MS.gene93915 | MS.gene072801 | PPI |
| MS.gene058289 | MS.gene072801 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072801.t1 | MTR_5g010520 | 95.198 | 1062 | 51 | 0 | 1 | 1062 | 1 | 1062 | 0.0 | 1998 |
| MS.gene072801.t1 | MTR_5g010520 | 94.765 | 936 | 49 | 0 | 1 | 936 | 1 | 936 | 0.0 | 1754 |
| MS.gene072801.t1 | MTR_8g097350 | 63.510 | 1077 | 333 | 9 | 1 | 1062 | 1 | 1032 | 0.0 | 1272 |
| MS.gene072801.t1 | MTR_8g097350 | 64.480 | 991 | 315 | 8 | 1 | 976 | 1 | 969 | 0.0 | 1200 |
| MS.gene072801.t1 | MTR_1g100633 | 36.970 | 779 | 416 | 16 | 1 | 769 | 1 | 714 | 9.21e-138 | 434 |
| MS.gene072801.t1 | MTR_1g100633 | 36.979 | 768 | 411 | 15 | 1 | 758 | 1 | 705 | 2.24e-137 | 434 |
| MS.gene072801.t1 | MTR_0415s0020 | 67.791 | 326 | 105 | 0 | 539 | 864 | 16 | 341 | 2.51e-137 | 417 |
| MS.gene072801.t1 | MTR_1g100633 | 36.970 | 779 | 416 | 16 | 1 | 769 | 1 | 714 | 4.77e-137 | 434 |
| MS.gene072801.t1 | MTR_1g100633 | 70.909 | 55 | 16 | 0 | 1007 | 1061 | 798 | 852 | 1.19e-14 | 79.3 |
| MS.gene072801.t1 | MTR_0415s0010 | 59.794 | 291 | 107 | 2 | 183 | 463 | 1 | 291 | 6.72e-96 | 306 |
| MS.gene072801.t1 | MTR_3g073620 | 25.967 | 724 | 436 | 19 | 1 | 670 | 1 | 678 | 6.29e-48 | 187 |
| MS.gene072801.t1 | MTR_1g062200 | 25.370 | 473 | 274 | 14 | 1 | 434 | 1 | 433 | 2.10e-25 | 114 |
| MS.gene072801.t1 | MTR_1g062200 | 25.370 | 473 | 274 | 14 | 1 | 434 | 1 | 433 | 2.20e-25 | 114 |
| MS.gene072801.t1 | MTR_1g062200 | 25.505 | 545 | 313 | 17 | 566 | 1058 | 776 | 1279 | 4.68e-12 | 71.2 |
| MS.gene072801.t1 | MTR_1g090807 | 22.747 | 466 | 311 | 14 | 1 | 436 | 25 | 471 | 2.32e-16 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene072801.t1 | AT1G63300 | 47.486 | 1074 | 507 | 16 | 1 | 1062 | 1 | 1029 | 0.0 | 841 |
| MS.gene072801.t1 | AT5G41140 | 45.149 | 1072 | 487 | 17 | 1 | 1061 | 1 | 982 | 0.0 | 786 |
| MS.gene072801.t1 | AT5G41140 | 45.047 | 1070 | 484 | 16 | 1 | 1061 | 1 | 975 | 0.0 | 783 |
| MS.gene072801.t1 | AT5G52280 | 36.149 | 888 | 453 | 17 | 1 | 886 | 1 | 776 | 7.86e-140 | 442 |
| MS.gene072801.t1 | AT5G52280 | 63.492 | 63 | 23 | 0 | 999 | 1061 | 790 | 852 | 3.07e-14 | 78.2 |
| MS.gene072801.t1 | AT1G22060 | 26.491 | 721 | 424 | 21 | 1 | 671 | 1 | 665 | 1.85e-44 | 176 |
| MS.gene072801.t1 | AT1G22060 | 26.491 | 721 | 424 | 21 | 1 | 671 | 1 | 665 | 1.85e-44 | 176 |
Find 191 sgRNAs with CRISPR-Local
Find 269 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTCTAATCTTCTGATA+TGG | 0.200984 | 5.3:+4090517 | None:intergenic |
| CAGTTTCCTTTGACTTTATC+AGG | 0.217694 | 5.3:+4089311 | None:intergenic |
| CTGTATCGCCGTTGCTGAAT+TGG | 0.249416 | 5.3:+4092009 | None:intergenic |
| CTCAGAGCTCGGGTTAAGTA+TGG | 0.260393 | 5.3:-4091468 | MS.gene072801:CDS |
| CTCAAGCAAGTGTGTCTCTT+TGG | 0.267898 | 5.3:+4090839 | None:intergenic |
| CCAGCATTGAGAAGAGATTC+AGG | 0.288948 | 5.3:-4089621 | MS.gene072801:CDS |
| CTCCTCTAATCTTCTGATAT+GGG | 0.296135 | 5.3:+4090518 | None:intergenic |
| ATGGGTTTCTAGTACCTTAA+TGG | 0.298162 | 5.3:+4090536 | None:intergenic |
| TCTTTATTTCACTCTTTAGC+TGG | 0.301119 | 5.3:+4089662 | None:intergenic |
| CAAAGCTGAACTTGCTGCTT+TGG | 0.315649 | 5.3:-4091366 | MS.gene072801:CDS |
| GTTGATACTCCCTGCGAAAT+TGG | 0.316541 | 5.3:-4091635 | MS.gene072801:CDS |
| TAGTTGACTGAAGCTCTTCT+TGG | 0.317857 | 5.3:+4090214 | None:intergenic |
| CAGAAGATTAGAGGAGGAAA+TGG | 0.318237 | 5.3:-4090511 | MS.gene072801:CDS |
| GGAACTCCAGAGCAGAATTA+TGG | 0.323324 | 5.3:-4089248 | MS.gene072801:CDS |
| CGTTCTGTTGTTTATTGCTT+TGG | 0.325606 | 5.3:+4091706 | None:intergenic |
| TGTATCGCGTTCGTGTCTAT+TGG | 0.326142 | 5.3:+4090959 | None:intergenic |
| AGCTTGGGGAACAAGTTAAT+AGG | 0.327660 | 5.3:-4090071 | MS.gene072801:CDS |
| AGATGTTTCGTTCTTCAAAA+TGG | 0.329139 | 5.3:-4093318 | MS.gene072801:CDS |
| GCAAGAATCAAATGCTGAAT+TGG | 0.334048 | 5.3:-4091045 | MS.gene072801:CDS |
| CTCCAATGGGGATGCCTCTT+GGG | 0.337850 | 5.3:+4091400 | None:intergenic |
| TGCCTCTTGGGAACTTTCCT+TGG | 0.342709 | 5.3:+4091412 | None:intergenic |
| TCTGCTCCAACATTTCTTCA+AGG | 0.343544 | 5.3:+4091006 | None:intergenic |
| GCTTTCTCTAATCTCTTTGT+TGG | 0.351234 | 5.3:+4092712 | None:intergenic |
| TTCGCAATGCTTCCTCGGCT+TGG | 0.354438 | 5.3:+4090412 | None:intergenic |
| TGAAACTCACATTGAGAATC+TGG | 0.362265 | 5.3:-4090607 | MS.gene072801:CDS |
| CGAAACAGTCAAGTATTATC+AGG | 0.373302 | 5.3:-4092647 | MS.gene072801:CDS |
| TCTGCGGCACGAGCCATAAC+TGG | 0.374717 | 5.3:+4091569 | None:intergenic |
| AATGGAGGAGTGAGAAGAAT+AGG | 0.381314 | 5.3:-4093300 | MS.gene072801:CDS |
| AAACCAGTTTGTTCCAGTTA+TGG | 0.383737 | 5.3:-4091582 | MS.gene072801:CDS |
| TCGAAAATCAGAAGAAGCTT+GGG | 0.384283 | 5.3:-4090086 | MS.gene072801:CDS |
| GCTTGGGGAACAAGTTAATA+GGG | 0.389725 | 5.3:-4090070 | MS.gene072801:CDS |
| TACTTGACTGTTTCGTATAC+CGG | 0.390138 | 5.3:+4092655 | None:intergenic |
| GAGAAAACTCTCAGCCCTTA+TGG | 0.392278 | 5.3:+4088729 | None:intergenic |
| CAATGCTTCCTCGGCTTGGA+TGG | 0.396921 | 5.3:+4090416 | None:intergenic |
| GAGGCATTAACAGCAGCATT+TGG | 0.397470 | 5.3:+4091542 | None:intergenic |
| TCATTTGCATTGAGAGTCTC+TGG | 0.397576 | 5.3:+4090340 | None:intergenic |
| AGAGTTTCATCTCTAACTCT+TGG | 0.402659 | 5.3:+4090931 | None:intergenic |
| TCTCCAATGGGGATGCCTCT+TGG | 0.408869 | 5.3:+4091399 | None:intergenic |
| AAATTCTCTAGCTACCATTA+AGG | 0.413944 | 5.3:-4090550 | MS.gene072801:CDS |
| AGAAGAAGTAAGAAATAGAT+TGG | 0.415538 | 5.3:-4088936 | MS.gene072801:CDS |
| TCCTCAGCATTCAAAAGAAA+TGG | 0.416016 | 5.3:-4089527 | MS.gene072801:CDS |
| TTCCTTCAATGACGACAATT+CGG | 0.418972 | 5.3:+4088880 | None:intergenic |
| AGACAGAATGTGACAATATC+AGG | 0.419878 | 5.3:-4091217 | MS.gene072801:CDS |
| GACCGAATTGTCGTCATTGA+AGG | 0.423001 | 5.3:-4088882 | MS.gene072801:CDS |
| TATCAAAAGCTAGCGCGGTC+GGG | 0.426391 | 5.3:-4092477 | MS.gene072801:CDS |
| CTGTGACCTGTTTCTCACTT+TGG | 0.434319 | 5.3:+4091169 | None:intergenic |
| ATATTTCAGGTGTTACAATC+AGG | 0.434804 | 5.3:-4092781 | MS.gene072801:intron |
| AACCCATATCAGAAGATTAG+AGG | 0.442026 | 5.3:-4090520 | MS.gene072801:CDS |
| TTGGGAACTTTCCTTGGAAA+GGG | 0.444214 | 5.3:+4091418 | None:intergenic |
| CTCATGTCTCTCTTCCCATC+AGG | 0.446018 | 5.3:-4092408 | MS.gene072801:CDS |
| CTCGAAAATCAGAAGAAGCT+TGG | 0.447142 | 5.3:-4090087 | MS.gene072801:CDS |
| TAGACGCAGTTCACTTGCTT+CGG | 0.447539 | 5.3:+4090272 | None:intergenic |
| CTTGGGAACTTTCCTTGGAA+AGG | 0.451320 | 5.3:+4091417 | None:intergenic |
| AGACTATGAGATATTAAAAC+AGG | 0.454104 | 5.3:-4090730 | MS.gene072801:CDS |
| AAATTGTCGGTGGGAGAATC+CGG | 0.455464 | 5.3:-4092674 | MS.gene072801:CDS |
| GAGGAGATGAACACTCATAT+TGG | 0.455757 | 5.3:+4090649 | None:intergenic |
| ACGATGCCAAAGTGAGAAAC+AGG | 0.457175 | 5.3:-4091175 | MS.gene072801:CDS |
| TGTTTAACTGTTCCTGCAGT+TGG | 0.458017 | 5.3:+4090673 | None:intergenic |
| GACACTCTTGAGGTTTCTTA+CGG | 0.459347 | 5.3:+4088751 | None:intergenic |
| CCAGCTCCATAATTCTGCTC+TGG | 0.462993 | 5.3:+4089242 | None:intergenic |
| ACAAAGTGGAGGAATTTAAT+CGG | 0.463277 | 5.3:-4089216 | MS.gene072801:CDS |
| TGAGTCTCTCAATCTCCAAT+GGG | 0.465745 | 5.3:+4091387 | None:intergenic |
| AAACCTCAAGAGTGTCCATA+AGG | 0.465783 | 5.3:-4088744 | MS.gene072801:CDS |
| CCTTTACAATTTGCTTCCTG+AGG | 0.465895 | 5.3:+4091306 | None:intergenic |
| GGTCTTTCGCAATGCTTCCT+CGG | 0.468804 | 5.3:+4090407 | None:intergenic |
| CTTTATTTCACTCTTTAGCT+GGG | 0.470948 | 5.3:+4089663 | None:intergenic |
| AGAGACATGAGAGGGCTTTG+TGG | 0.474075 | 5.3:+4092420 | None:intergenic |
| TGGCATCGTCCATGCGTTTG+TGG | 0.475881 | 5.3:+4091189 | None:intergenic |
| ATCTTAAATGAACAAGTAGA+AGG | 0.476702 | 5.3:-4089985 | MS.gene072801:CDS |
| CTAGCTTATGTACAAGCTTG+TGG | 0.476951 | 5.3:+4090703 | None:intergenic |
| GCTTCAATTCAATGCTACTA+AGG | 0.477435 | 5.3:-4093260 | MS.gene072801:intron |
| GAGTTTCATCTCTAACTCTT+GGG | 0.477504 | 5.3:+4090932 | None:intergenic |
| CACGCGGACAATAGTCTTAG+TGG | 0.488677 | 5.3:-4088911 | MS.gene072801:CDS |
| ACATCAAGGAACTGTGGAAA+GGG | 0.491299 | 5.3:-4089896 | MS.gene072801:CDS |
| TTATCAAAAGCTAGCGCGGT+CGG | 0.492008 | 5.3:-4092478 | MS.gene072801:CDS |
| GAGCCATAACTGGAACAAAC+TGG | 0.492152 | 5.3:+4091579 | None:intergenic |
| TCAAGTTCTGATGACAGCTC+TGG | 0.494881 | 5.3:-4091659 | MS.gene072801:CDS |
| TGAATTGGTTCTTGCCGTGC+AGG | 0.496687 | 5.3:-4091030 | MS.gene072801:CDS |
| CCTGAATCTCTTCTCAATGC+TGG | 0.497104 | 5.3:+4089621 | None:intergenic |
| TTGTCTTTCACCTTCGACCT+CGG | 0.497897 | 5.3:+4088787 | None:intergenic |
| CACAATTGCGTCATTGAAGA+AGG | 0.500768 | 5.3:-4089860 | MS.gene072801:CDS |
| TCAATGTCATTCATAGCAGC+AGG | 0.501038 | 5.3:+4090627 | None:intergenic |
| AACAACTTCATCTATGAAGA+AGG | 0.501525 | 5.3:-4089275 | MS.gene072801:CDS |
| AGCCCTTATGGACACTCTTG+AGG | 0.501555 | 5.3:+4088741 | None:intergenic |
| AAGAGTGAAATAAAGAAGAA+AGG | 0.501656 | 5.3:-4089655 | MS.gene072801:CDS |
| AGTATGGGTGATTCAACAAA+CGG | 0.501745 | 5.3:-4091452 | MS.gene072801:CDS |
| CTTTACAATTTGCTTCCTGA+GGG | 0.502149 | 5.3:+4091307 | None:intergenic |
| CATTATCTTGAAAGATGAAA+GGG | 0.502436 | 5.3:-4091249 | MS.gene072801:CDS |
| TGCTGCTTTGGCGAGGCACA+TGG | 0.503620 | 5.3:-4091354 | MS.gene072801:CDS |
| TATTATCAGGATCCAAAGAC+TGG | 0.506601 | 5.3:-4092634 | MS.gene072801:CDS |
| TTCATCTATGAAGAAGGAAA+AGG | 0.506959 | 5.3:-4089269 | MS.gene072801:CDS |
| TTGGTGTTGTCAATAGTTCC+TGG | 0.507047 | 5.3:-4092748 | MS.gene072801:CDS |
| CTCAAATTTGCCGAGGTCGA+AGG | 0.512604 | 5.3:-4088797 | MS.gene072801:CDS |
| TCAATAGTTCCTGGTGACAT+TGG | 0.514235 | 5.3:-4092739 | MS.gene072801:CDS |
| ATCAAAAGCTAGCGCGGTCG+GGG | 0.515068 | 5.3:-4092476 | MS.gene072801:CDS |
| TTTACATCAGAAATCACAAT+GGG | 0.515966 | 5.3:-4091504 | MS.gene072801:CDS |
| GTGAAATTGAAATGTATAGG+AGG | 0.515977 | 5.3:-4090794 | MS.gene072801:CDS |
| TTGAGTCTCTCAATCTCCAA+TGG | 0.520575 | 5.3:+4091386 | None:intergenic |
| GAAGGAAAGAAACAAATCAA+TGG | 0.521587 | 5.3:-4088864 | MS.gene072801:CDS |
| AAAGTCAAAGGAAACTGCAT+TGG | 0.521988 | 5.3:-4089305 | MS.gene072801:CDS |
| TTCTCAAAATGCCCTTTCCA+AGG | 0.530388 | 5.3:-4091429 | MS.gene072801:CDS |
| CGTCATCTAGCTCAGAGCTC+GGG | 0.531611 | 5.3:-4091478 | MS.gene072801:CDS |
| ATTGTAAAGGAAAGCAAAAG+AGG | 0.532163 | 5.3:-4091293 | MS.gene072801:CDS |
| CCTCAGGAAGCAAATTGTAA+AGG | 0.534111 | 5.3:-4091306 | MS.gene072801:CDS |
| TACCTTTGATGAAAATGAGA+AGG | 0.534206 | 5.3:-4090313 | MS.gene072801:CDS |
| CTTCCCATCAGGAATTCTCA+TGG | 0.534773 | 5.3:-4092397 | MS.gene072801:CDS |
| TTCCCAAGAGGCATCCCCAT+TGG | 0.536163 | 5.3:-4091402 | MS.gene072801:CDS |
| ATAAACAACAGAACGTCTAG+TGG | 0.536249 | 5.3:-4091698 | MS.gene072801:CDS |
| AACAGGTCACAGTTGGAAAG+TGG | 0.538483 | 5.3:-4091158 | MS.gene072801:CDS |
| ACAATCAGGGGTAGATGCAT+TGG | 0.538961 | 5.3:-4092767 | MS.gene072801:CDS |
| TATTTCAGGTGTTACAATCA+GGG | 0.542788 | 5.3:-4092780 | MS.gene072801:intron |
| AGAAATCTTAAGAACTGACT+TGG | 0.543909 | 5.3:-4089959 | MS.gene072801:CDS |
| CGGTTCAAGATGGAAATTGT+CGG | 0.544548 | 5.3:-4092687 | MS.gene072801:CDS |
| TCTGAAACATTGTTACATCA+AGG | 0.545037 | 5.3:-4089910 | MS.gene072801:CDS |
| GCAGGACCTTGAAGAAATGT+TGG | 0.545528 | 5.3:-4091012 | MS.gene072801:CDS |
| TCGTCATCTAGCTCAGAGCT+CGG | 0.545721 | 5.3:-4091479 | MS.gene072801:CDS |
| TTGTATCTATTTGATTGCAA+AGG | 0.545922 | 5.3:+4090163 | None:intergenic |
| GAGAAAGCTACGGTTCAAGA+TGG | 0.550233 | 5.3:-4092697 | MS.gene072801:CDS |
| CAGCATTGAGAAGAGATTCA+GGG | 0.550761 | 5.3:-4089620 | MS.gene072801:CDS |
| AACTGGAACAAACTGGTTTG+TGG | 0.550964 | 5.3:+4091586 | None:intergenic |
| CCAGAGCAGAATTATGGAGC+TGG | 0.551430 | 5.3:-4089242 | MS.gene072801:CDS |
| TCAGATACAGCAGATGTTGG+TGG | 0.553151 | 5.3:-4090133 | MS.gene072801:CDS |
| TAGACTATTGATGTCAGAGT+TGG | 0.554893 | 5.3:-4089770 | MS.gene072801:CDS |
| GTTGGTCTTCCAATGTCACC+AGG | 0.557975 | 5.3:+4092730 | None:intergenic |
| GGAACAAACTGGTTTGTGGT+GGG | 0.559149 | 5.3:+4091590 | None:intergenic |
| GGCGAGGCACATGGATGTGT+CGG | 0.560632 | 5.3:-4091345 | MS.gene072801:CDS |
| AACCTCAAGAGTGTCCATAA+GGG | 0.560828 | 5.3:-4088743 | MS.gene072801:CDS |
| CTGAACTTGCTGCTTTGGCG+AGG | 0.561486 | 5.3:-4091361 | MS.gene072801:CDS |
| ACTTATGAAGAAATCAATTG+TGG | 0.564035 | 5.3:-4089935 | MS.gene072801:CDS |
| GCACATGGATGTGTCGGACA+TGG | 0.564836 | 5.3:-4091339 | MS.gene072801:CDS |
| TCATTATCTTGAAAGATGAA+AGG | 0.568558 | 5.3:-4091250 | MS.gene072801:CDS |
| ACATGGAACTACAGACCCTC+AGG | 0.571689 | 5.3:-4091322 | MS.gene072801:CDS |
| AAGAGATTCAGGGATAGTAA+TGG | 0.571784 | 5.3:-4089610 | MS.gene072801:CDS |
| GCTAGAGCAAAGCCAACTGC+AGG | 0.575549 | 5.3:-4090685 | MS.gene072801:CDS |
| GGACGCAACCAACTTTCTGA+TGG | 0.575833 | 5.3:-4089589 | MS.gene072801:CDS |
| TGAAATTGAAATGTATAGGA+GGG | 0.575835 | 5.3:-4090793 | MS.gene072801:CDS |
| TACATCAAGGAACTGTGGAA+AGG | 0.578194 | 5.3:-4089897 | MS.gene072801:CDS |
| TGAAGCTGATATAGAAGCAA+TGG | 0.579079 | 5.3:-4090469 | MS.gene072801:CDS |
| AGTGAGAAACAGGTCACAGT+TGG | 0.580096 | 5.3:-4091165 | MS.gene072801:CDS |
| TCAGAGCTCGGGTTAAGTAT+GGG | 0.581632 | 5.3:-4091467 | MS.gene072801:CDS |
| TGCGTCATTGAAGAAGGAAG+CGG | 0.583079 | 5.3:-4089854 | MS.gene072801:CDS |
| AAAGGAAAGCAAAAGAGGGC+AGG | 0.588422 | 5.3:-4091288 | MS.gene072801:CDS |
| TAAATCATGCATCGGTGTCG+AGG | 0.589755 | 5.3:+4091523 | None:intergenic |
| ATTTCAGGTGTTACAATCAG+GGG | 0.591987 | 5.3:-4092779 | MS.gene072801:intron |
| CATTTCTTCAAGGTCCTGCA+CGG | 0.592246 | 5.3:+4091016 | None:intergenic |
| AATTCAATGATAAGAGCTCA+AGG | 0.592406 | 5.3:-4092034 | MS.gene072801:CDS |
| AGTTCAGATACAGCAGATGT+TGG | 0.594949 | 5.3:-4090136 | MS.gene072801:CDS |
| TGCTTCGGTCAATGCTCTCG+TGG | 0.595708 | 5.3:+4090287 | None:intergenic |
| AGAACTCAAGGAGCAGTCAG+AGG | 0.599935 | 5.3:-4090580 | MS.gene072801:CDS |
| TACAGCTGAAAGGCTTCAAG+AGG | 0.600122 | 5.3:-4090367 | MS.gene072801:CDS |
| TTCAAGATGGAAATTGTCGG+TGG | 0.600830 | 5.3:-4092684 | MS.gene072801:CDS |
| AGCATTGGATGATCTTGTCA+AGG | 0.603938 | 5.3:-4090874 | MS.gene072801:CDS |
| TGTTTCGTTCTTCAAAATGG+AGG | 0.604012 | 5.3:-4093315 | MS.gene072801:CDS |
| GAACAAACTGGTTTGTGGTG+GGG | 0.604811 | 5.3:+4091591 | None:intergenic |
| TTTCTCAGTCCAATTTCGCA+GGG | 0.605119 | 5.3:+4091626 | None:intergenic |
| AAGTAAAATGAGAAATCTCA+AGG | 0.605138 | 5.3:-4089812 | MS.gene072801:CDS |
| AGCAGCATTTGGAGATTCTG+CGG | 0.610316 | 5.3:+4091553 | None:intergenic |
| TGGAACAAACTGGTTTGTGG+TGG | 0.614538 | 5.3:+4091589 | None:intergenic |
| AAGAGGGCAGGATCTCATGA+AGG | 0.615741 | 5.3:-4091276 | MS.gene072801:CDS |
| CAGGTCTTTCCACAAACGCA+TGG | 0.619359 | 5.3:-4091198 | MS.gene072801:CDS |
| GCAGGGCCTGATAAAGTCAA+AGG | 0.619605 | 5.3:-4089317 | MS.gene072801:intron |
| ATCTCCATGAGAATTCCTGA+TGG | 0.620737 | 5.3:+4092393 | None:intergenic |
| TTGTAAAGGAAAGCAAAAGA+GGG | 0.620965 | 5.3:-4091292 | MS.gene072801:CDS |
| TTCTGATGTAAATCATGCAT+CGG | 0.622397 | 5.3:+4091515 | None:intergenic |
| AAAATGCTAATACAGCTGAA+AGG | 0.622552 | 5.3:-4090377 | MS.gene072801:CDS |
| GCAAAGAGCCATCCAAGCCG+AGG | 0.624482 | 5.3:-4090424 | MS.gene072801:CDS |
| AATGTATAGGAGGGACAAAG+AGG | 0.627725 | 5.3:-4090784 | MS.gene072801:CDS |
| ATGGTGAAATTGAAATGTAT+AGG | 0.630918 | 5.3:-4090797 | MS.gene072801:CDS |
| ATGGGAAGAGAGACATGAGA+GGG | 0.634288 | 5.3:+4092412 | None:intergenic |
| TCAAGATGGAAATTGTCGGT+GGG | 0.636130 | 5.3:-4092683 | MS.gene072801:CDS |
| TCTCCATGAGAATTCCTGAT+GGG | 0.642494 | 5.3:+4092394 | None:intergenic |
| AAAGAGATTAGAGAAAGCTA+CGG | 0.643270 | 5.3:-4092707 | MS.gene072801:CDS |
| TATGGAGCTGGAGAACAAAG+TGG | 0.649823 | 5.3:-4089230 | MS.gene072801:CDS |
| GTCAACTAAAGCCGATTACG+AGG | 0.650363 | 5.3:-4090199 | MS.gene072801:CDS |
| TCAAGGAACCAATTCAGCAA+CGG | 0.650410 | 5.3:-4092017 | MS.gene072801:CDS |
| ATTGTTACATCAAGGAACTG+TGG | 0.651765 | 5.3:-4089902 | MS.gene072801:CDS |
| CCATATCAGAAGATTAGAGG+AGG | 0.652060 | 5.3:-4090517 | MS.gene072801:CDS |
| CGAAAATCAGAAGAAGCTTG+GGG | 0.658269 | 5.3:-4090085 | MS.gene072801:CDS |
| TAAACAACAGAACGTCTAGT+GGG | 0.662018 | 5.3:-4091697 | MS.gene072801:CDS |
| TTCCAAGGAAAGTTCCCAAG+AGG | 0.662303 | 5.3:-4091414 | MS.gene072801:CDS |
| ATTTACATCAGAAATCACAA+TGG | 0.664555 | 5.3:-4091505 | MS.gene072801:CDS |
| GATGGGAAGAGAGACATGAG+AGG | 0.665257 | 5.3:+4092411 | None:intergenic |
| TCGGAATGTTACTTTACACG+AGG | 0.681478 | 5.3:-4089197 | MS.gene072801:intron |
| AATGAGTCTCAAATTTGCCG+AGG | 0.681950 | 5.3:-4088804 | MS.gene072801:CDS |
| ATGTCATTCATAGCAGCAGG+AGG | 0.682334 | 5.3:+4090630 | None:intergenic |
| AGTTAATAGGGATTTCTCTG+AGG | 0.682694 | 5.3:-4090058 | MS.gene072801:CDS |
| GGGGTTATCAAAAGCTAGCG+CGG | 0.685962 | 5.3:-4092482 | MS.gene072801:CDS |
| GGAGCTGGAGAACAAAGTGG+AGG | 0.699117 | 5.3:-4089227 | MS.gene072801:CDS |
| GAGTCTCTCAATCTCCAATG+GGG | 0.705362 | 5.3:+4091388 | None:intergenic |
| AGAACTTGACAATGTAACGT+CGG | 0.708038 | 5.3:+4091673 | None:intergenic |
| AAGAAATAGATTGGAACACG+CGG | 0.713897 | 5.3:-4088927 | MS.gene072801:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAACTGTTATTAATAA+AGG | + | chr5.3:4089054-4089073 | None:intergenic | 10.0% |
| !! | TTATATTATTATTGAAATCT+AGG | + | chr5.3:4089078-4089097 | None:intergenic | 10.0% |
| !! | AAAAAAATGATCAAATTCAA+AGG | - | chr5.3:4089852-4089871 | MS.gene072801:CDS | 15.0% |
| !! | AAAAAAATTATAGACTTGTA+TGG | - | chr5.3:4091239-4091258 | MS.gene072801:CDS | 15.0% |
| !! | CCTTTATATTAACATAAAAA+GGG | + | chr5.3:4092708-4092727 | None:intergenic | 15.0% |
| !! | CTTTATATTAACATAAAAAG+GGG | + | chr5.3:4092707-4092726 | None:intergenic | 15.0% |
| !! | TCCTTTATATTAACATAAAA+AGG | + | chr5.3:4092709-4092728 | None:intergenic | 15.0% |
| !!! | GTCATTGATATAAAAATTTT+GGG | - | chr5.3:4089540-4089559 | MS.gene072801:CDS | 15.0% |
| !!! | TGATTTTTTGATTAATAAAC+AGG | - | chr5.3:4089808-4089827 | MS.gene072801:CDS | 15.0% |
| !!! | TGTCATTGATATAAAAATTT+TGG | - | chr5.3:4089539-4089558 | MS.gene072801:CDS | 15.0% |
| !!! | TTTTTATTCTTAATGGTATT+AGG | - | chr5.3:4089194-4089213 | MS.gene072801:intron | 15.0% |
| !! | CAAGAAAATTGAAATATGAT+AGG | + | chr5.3:4089125-4089144 | None:intergenic | 20.0% |
| !! | GAATGAATAATCTAATGTAT+TGG | - | chr5.3:4088936-4088955 | MS.gene072801:CDS | 20.0% |
| !! | TTTGTTTGTATATATTCAAC+TGG | - | chr5.3:4090185-4090204 | MS.gene072801:CDS | 20.0% |
| !!! | AAGCAATTTTTTTGTTGATT+GGG | + | chr5.3:4092504-4092523 | None:intergenic | 20.0% |
| !!! | AATTTTCTTGGAAATGAAAA+TGG | - | chr5.3:4089135-4089154 | MS.gene072801:intron | 20.0% |
| !!! | CATTATTATTTTTCCATTTC+TGG | - | chr5.3:4089893-4089912 | MS.gene072801:CDS | 20.0% |
| !!! | CCCTTTTTATGTTAATATAA+AGG | - | chr5.3:4092705-4092724 | MS.gene072801:CDS | 20.0% |
| !!! | CTATCATATTTCAATTTTCT+TGG | - | chr5.3:4089123-4089142 | MS.gene072801:intron | 20.0% |
| ! | AAAATTCTTGTGACTTCTTA+CGG | - | chr5.3:4090123-4090142 | MS.gene072801:CDS | 25.0% |
| ! | AAACTTTCATTGTTGAAATG+TGG | - | chr5.3:4092987-4093006 | MS.gene072801:intron | 25.0% |
| ! | AAGAGTGAAATAAAGAAGAA+AGG | - | chr5.3:4092400-4092419 | MS.gene072801:CDS | 25.0% |
| ! | AAGTAAAATGAGAAATCTCA+AGG | - | chr5.3:4092243-4092262 | MS.gene072801:intron | 25.0% |
| ! | ACTTATGAAGAAATCAATTG+TGG | - | chr5.3:4092120-4092139 | MS.gene072801:intron | 25.0% |
| ! | AGAAGAAGTAAGAAATAGAT+TGG | - | chr5.3:4093119-4093138 | MS.gene072801:intron | 25.0% |
| ! | AGACTATGAGATATTAAAAC+AGG | - | chr5.3:4091325-4091344 | MS.gene072801:CDS | 25.0% |
| ! | AGAGAAAATAAAAATGCTTG+AGG | - | chr5.3:4092561-4092580 | MS.gene072801:intron | 25.0% |
| ! | ATCTTAAATGAACAAGTAGA+AGG | - | chr5.3:4092070-4092089 | MS.gene072801:intron | 25.0% |
| ! | ATGGTGAAATTGAAATGTAT+AGG | - | chr5.3:4091258-4091277 | MS.gene072801:CDS | 25.0% |
| ! | ATTTACATCAGAAATCACAA+TGG | - | chr5.3:4090550-4090569 | MS.gene072801:CDS | 25.0% |
| ! | CATTATCTTGAAAGATGAAA+GGG | - | chr5.3:4090806-4090825 | MS.gene072801:CDS | 25.0% |
| ! | TATTCTTAATGGTATTAGGT+TGG | - | chr5.3:4089198-4089217 | MS.gene072801:CDS | 25.0% |
| ! | TCATTATCTTGAAAGATGAA+AGG | - | chr5.3:4090805-4090824 | MS.gene072801:CDS | 25.0% |
| ! | TGAAATTGAAATGTATAGGA+GGG | - | chr5.3:4091262-4091281 | MS.gene072801:CDS | 25.0% |
| ! | TTGTATCTATTTGATTGCAA+AGG | + | chr5.3:4091895-4091914 | None:intergenic | 25.0% |
| ! | TTTACATCAGAAATCACAAT+GGG | - | chr5.3:4090551-4090570 | MS.gene072801:CDS | 25.0% |
| !!! | AAAATTTTGGGTTTATATGC+AGG | - | chr5.3:4089552-4089571 | MS.gene072801:CDS | 25.0% |
| !!! | AAATTCAAAGGTACTACAAA+GGG | - | chr5.3:4089864-4089883 | MS.gene072801:CDS | 25.0% |
| !!! | AAATTTTGGGTTTATATGCA+GGG | - | chr5.3:4089553-4089572 | MS.gene072801:CDS | 25.0% |
| !!! | AGCAATTTTTTTGTTGATTG+GGG | + | chr5.3:4092503-4092522 | None:intergenic | 25.0% |
| !!! | CTTCACATGTTTTTTACTTT+CGG | + | chr5.3:4090281-4090300 | None:intergenic | 25.0% |
| !!! | GAAGCAATTTTTTTGTTGAT+TGG | + | chr5.3:4092505-4092524 | None:intergenic | 25.0% |
| !!! | GCATCTTTTTTAACTGTAAT+CGG | + | chr5.3:4090992-4091011 | None:intergenic | 25.0% |
| !!! | TTTGAAAAAGTCACTTTTTG+AGG | - | chr5.3:4092333-4092352 | MS.gene072801:intron | 25.0% |
| AAAATGCTAATACAGCTGAA+AGG | - | chr5.3:4091678-4091697 | MS.gene072801:CDS | 30.0% | |
| AAAGAGATTAGAGAAAGCTA+CGG | - | chr5.3:4089348-4089367 | MS.gene072801:intron | 30.0% | |
| AAATTCTCTAGCTACCATTA+AGG | - | chr5.3:4091505-4091524 | MS.gene072801:CDS | 30.0% | |
| AACAACTTCATCTATGAAGA+AGG | - | chr5.3:4092780-4092799 | MS.gene072801:intron | 30.0% | |
| AACATAAAAAGGGGAAATGA+AGG | + | chr5.3:4092698-4092717 | None:intergenic | 30.0% | |
| AATTCAATGATAAGAGCTCA+AGG | - | chr5.3:4090021-4090040 | MS.gene072801:CDS | 30.0% | |
| ACAAAGTGGAGGAATTTAAT+CGG | - | chr5.3:4092839-4092858 | MS.gene072801:intron | 30.0% | |
| AGAAATCTTAAGAACTGACT+TGG | - | chr5.3:4092096-4092115 | MS.gene072801:intron | 30.0% | |
| ATGAGATGAGAAATTGTGTT+TGG | - | chr5.3:4089244-4089263 | MS.gene072801:CDS | 30.0% | |
| ATTGTAAAGGAAAGCAAAAG+AGG | - | chr5.3:4090762-4090781 | MS.gene072801:CDS | 30.0% | |
| ATTTCAAGCAACTTTACATC+TGG | + | chr5.3:4089724-4089743 | None:intergenic | 30.0% | |
| CAAGACTAAGTTTGTAATTC+AGG | + | chr5.3:4092946-4092965 | None:intergenic | 30.0% | |
| CAATCTTGTATAACCAGAAA+TGG | + | chr5.3:4089909-4089928 | None:intergenic | 30.0% | |
| CATCAATGATATGAAGACAT+AGG | - | chr5.3:4092596-4092615 | MS.gene072801:CDS | 30.0% | |
| GAAATGGAAAAACAAGTACA+GGG | - | chr5.3:4091560-4091579 | MS.gene072801:CDS | 30.0% | |
| GAAGGAAAGAAACAAATCAA+TGG | - | chr5.3:4093191-4093210 | MS.gene072801:intron | 30.0% | |
| GTGAAATTGAAATGTATAGG+AGG | - | chr5.3:4091261-4091280 | MS.gene072801:CDS | 30.0% | |
| TACCTTTGATGAAAATGAGA+AGG | - | chr5.3:4091742-4091761 | MS.gene072801:intron | 30.0% | |
| TTCATCTATGAAGAAGGAAA+AGG | - | chr5.3:4092786-4092805 | MS.gene072801:intron | 30.0% | |
| TTCTGATGTAAATCATGCAT+CGG | + | chr5.3:4090543-4090562 | None:intergenic | 30.0% | |
| TTGTAAAGGAAAGCAAAAGA+GGG | - | chr5.3:4090763-4090782 | MS.gene072801:CDS | 30.0% | |
| TTTCAATAACATTTGCAGAG+AGG | - | chr5.3:4089971-4089990 | MS.gene072801:CDS | 30.0% | |
| ! | ACTTGAGAGTTTTTATGATG+TGG | - | chr5.3:4089939-4089958 | MS.gene072801:CDS | 30.0% |
| ! | ATATTTCAGGTGTTACAATC+AGG | - | chr5.3:4089274-4089293 | MS.gene072801:CDS | 30.0% |
| ! | CTTTATTTCACTCTTTAGCT+GGG | + | chr5.3:4092395-4092414 | None:intergenic | 30.0% |
| ! | TATTTCAGGTGTTACAATCA+GGG | - | chr5.3:4089275-4089294 | MS.gene072801:CDS | 30.0% |
| ! | TCTGAAACATTGTTACATCA+AGG | - | chr5.3:4092145-4092164 | MS.gene072801:intron | 30.0% |
| ! | TCTTTATTTCACTCTTTAGC+TGG | + | chr5.3:4092396-4092415 | None:intergenic | 30.0% |
| ! | TGATGAAGATCAAAAAGCAT+TGG | - | chr5.3:4091166-4091185 | MS.gene072801:CDS | 30.0% |
| ! | TTTTAGATCCATCAGAAAGT+TGG | + | chr5.3:4092477-4092496 | None:intergenic | 30.0% |
| !! | ATTACAAACTTAGTCTTGCT+TGG | - | chr5.3:4092948-4092967 | MS.gene072801:intron | 30.0% |
| !! | CAAATTCAAAGGTACTACAA+AGG | - | chr5.3:4089863-4089882 | MS.gene072801:CDS | 30.0% |
| !! | CATTTCTGGTTATACAAGAT+TGG | - | chr5.3:4089907-4089926 | MS.gene072801:CDS | 30.0% |
| !! | GTTTGGTGATGTAATATTTC+AGG | - | chr5.3:4089261-4089280 | MS.gene072801:CDS | 30.0% |
| !! | TCTAATGTATTGGTTCTGTT+AGG | - | chr5.3:4088946-4088965 | MS.gene072801:CDS | 30.0% |
| !! | TGTATTAGCATTTTTCAGTC+TGG | + | chr5.3:4091672-4091691 | None:intergenic | 30.0% |
| !!! | AATTTTGGGTTTATATGCAG+GGG | - | chr5.3:4089554-4089573 | MS.gene072801:CDS | 30.0% |
| !!! | AATTTTTTTGTTGATTGGGG+TGG | + | chr5.3:4092500-4092519 | None:intergenic | 30.0% |
| !!! | ATATCATTTTTTGCTCTCGA+CGG | - | chr5.3:4089462-4089481 | MS.gene072801:intron | 30.0% |
| !!! | CATTTTTTTCTTGCATTCTC+TGG | + | chr5.3:4089841-4089860 | None:intergenic | 30.0% |
| AAAGTCAAAGGAAACTGCAT+TGG | - | chr5.3:4092750-4092769 | MS.gene072801:CDS | 35.0% | |
| AACCCATATCAGAAGATTAG+AGG | - | chr5.3:4091535-4091554 | MS.gene072801:CDS | 35.0% | |
| AAGAAATAGATTGGAACACG+CGG | - | chr5.3:4093128-4093147 | MS.gene072801:intron | 35.0% | |
| AAGAGATTCAGGGATAGTAA+TGG | - | chr5.3:4092445-4092464 | MS.gene072801:CDS | 35.0% | |
| AGAACTTGACAATGTAACGT+CGG | + | chr5.3:4090385-4090404 | None:intergenic | 35.0% | |
| AGACAGAATGTGACAATATC+AGG | - | chr5.3:4090838-4090857 | MS.gene072801:CDS | 35.0% | |
| AGAGTTTCATCTCTAACTCT+TGG | + | chr5.3:4091127-4091146 | None:intergenic | 35.0% | |
| AGTAAGCATTTCACTCATTC+AGG | - | chr5.3:4090097-4090116 | MS.gene072801:CDS | 35.0% | |
| AGTATGGGTGATTCAACAAA+CGG | - | chr5.3:4090603-4090622 | MS.gene072801:CDS | 35.0% | |
| AGTTAATAGGGATTTCTCTG+AGG | - | chr5.3:4091997-4092016 | MS.gene072801:CDS | 35.0% | |
| ATAAACAACAGAACGTCTAG+TGG | - | chr5.3:4090357-4090376 | MS.gene072801:CDS | 35.0% | |
| ATCCTGAACAACCAATTTGA+AGG | + | chr5.3:4093070-4093089 | None:intergenic | 35.0% | |
| ATTGTTACATCAAGGAACTG+TGG | - | chr5.3:4092153-4092172 | MS.gene072801:intron | 35.0% | |
| CAAGGAAGAAAAAGAAGAAG+AGG | - | chr5.3:4092261-4092280 | MS.gene072801:intron | 35.0% | |
| CAATTCAATGCTACTAAGGT+AGG | - | chr5.3:4088799-4088818 | MS.gene072801:CDS | 35.0% | |
| CATTAACATGCCCTTCAAAT+TGG | - | chr5.3:4093056-4093075 | MS.gene072801:intron | 35.0% | |
| CGAAACAGTCAAGTATTATC+AGG | - | chr5.3:4089408-4089427 | MS.gene072801:intron | 35.0% | |
| CTACAGAAAAATCTAGTGGA+AGG | - | chr5.3:4091803-4091822 | MS.gene072801:intron | 35.0% | |
| CTCCTCTAATCTTCTGATAT+GGG | + | chr5.3:4091540-4091559 | None:intergenic | 35.0% | |
| GAATCTGGAAAAAGAACTCA+AGG | - | chr5.3:4091463-4091482 | MS.gene072801:CDS | 35.0% | |
| GAGTTTCATCTCTAACTCTT+GGG | + | chr5.3:4091126-4091145 | None:intergenic | 35.0% | |
| GATAGATTGCATACTGAGTA+AGG | + | chr5.3:4090216-4090235 | None:intergenic | 35.0% | |
| GCAAGAATCAAATGCTGAAT+TGG | - | chr5.3:4091010-4091029 | MS.gene072801:CDS | 35.0% | |
| GCTTCAATTCAATGCTACTA+AGG | - | chr5.3:4088795-4088814 | MS.gene072801:CDS | 35.0% | |
| GCTTTCTCTAATCTCTTTGT+TGG | + | chr5.3:4089346-4089365 | None:intergenic | 35.0% | |
| GGAAATGGAAAAACAAGTAC+AGG | - | chr5.3:4091559-4091578 | MS.gene072801:CDS | 35.0% | |
| TAAACAACAGAACGTCTAGT+GGG | - | chr5.3:4090358-4090377 | MS.gene072801:CDS | 35.0% | |
| TACAAGAGAAAACAGCATTC+AGG | + | chr5.3:4092650-4092669 | None:intergenic | 35.0% | |
| TACTTGACTGTTTCGTATAC+CGG | + | chr5.3:4089403-4089422 | None:intergenic | 35.0% | |
| TAGACTATTGATGTCAGAGT+TGG | - | chr5.3:4092285-4092304 | MS.gene072801:intron | 35.0% | |
| TATTATCAGGATCCAAAGAC+TGG | - | chr5.3:4089421-4089440 | MS.gene072801:intron | 35.0% | |
| TCCTCAGCATTCAAAAGAAA+TGG | - | chr5.3:4092528-4092547 | MS.gene072801:intron | 35.0% | |
| TCCTGAACAACCAATTTGAA+GGG | + | chr5.3:4093069-4093088 | None:intergenic | 35.0% | |
| TCGAAAATCAGAAGAAGCTT+GGG | - | chr5.3:4091969-4091988 | MS.gene072801:intron | 35.0% | |
| TGAAACTCACATTGAGAATC+TGG | - | chr5.3:4091448-4091467 | MS.gene072801:CDS | 35.0% | |
| TGAAGCTGATATAGAAGCAA+TGG | - | chr5.3:4091586-4091605 | MS.gene072801:CDS | 35.0% | |
| TGTTTCGTTCTTCAAAATGG+AGG | - | chr5.3:4088740-4088759 | MS.gene072801:CDS | 35.0% | |
| TTCCTTCAATGACGACAATT+CGG | + | chr5.3:4093178-4093197 | None:intergenic | 35.0% | |
| ! | AAACCAGTTTGTTCCAGTTA+TGG | - | chr5.3:4090473-4090492 | MS.gene072801:CDS | 35.0% |
| ! | AGCCTTCTCATTTTCATCAA+AGG | + | chr5.3:4091747-4091766 | None:intergenic | 35.0% |
| ! | ATTTCAGGTGTTACAATCAG+GGG | - | chr5.3:4089276-4089295 | MS.gene072801:CDS | 35.0% |
| ! | CAGTTTCCTTTGACTTTATC+AGG | + | chr5.3:4092747-4092766 | None:intergenic | 35.0% |
| ! | CGTTCTGTTGTTTATTGCTT+TGG | + | chr5.3:4090352-4090371 | None:intergenic | 35.0% |
| ! | CTTTACAATTTGCTTCCTGA+GGG | + | chr5.3:4090751-4090770 | None:intergenic | 35.0% |
| ! | GTTCAGTTTTACCTCGTAAT+CGG | + | chr5.3:4091870-4091889 | None:intergenic | 35.0% |
| !! | AAAGGTACTACAAAGGGAAT+TGG | - | chr5.3:4089870-4089889 | MS.gene072801:CDS | 35.0% |
| !! | ATGGGTTTCTAGTACCTTAA+TGG | + | chr5.3:4091522-4091541 | None:intergenic | 35.0% |
| !!! | AAAGTCACTTTTTGAGGATG+AGG | - | chr5.3:4092339-4092358 | MS.gene072801:intron | 35.0% |
| !!! | CGCTTCACTCAATTTTGATT+AGG | + | chr5.3:4089757-4089776 | None:intergenic | 35.0% |
| !!! | TCGTTGATTTTTCCAGTCTT+TGG | + | chr5.3:4089436-4089455 | None:intergenic | 35.0% |
| AATGAGTCTCAAATTTGCCG+AGG | - | chr5.3:4093251-4093270 | MS.gene072801:intron | 40.0% | |
| AATGGAGGAGTGAGAAGAAT+AGG | - | chr5.3:4088755-4088774 | MS.gene072801:CDS | 40.0% | |
| AATGTATAGGAGGGACAAAG+AGG | - | chr5.3:4091271-4091290 | MS.gene072801:CDS | 40.0% | |
| ACATCAAGGAACTGTGGAAA+GGG | - | chr5.3:4092159-4092178 | MS.gene072801:intron | 40.0% | |
| AGCTTGGGGAACAAGTTAAT+AGG | - | chr5.3:4091984-4092003 | MS.gene072801:CDS | 40.0% | |
| AGTTCAGATACAGCAGATGT+TGG | - | chr5.3:4091919-4091938 | MS.gene072801:intron | 40.0% | |
| ATCCTGTTATGCAGAGAAAC+AGG | + | chr5.3:4090322-4090341 | None:intergenic | 40.0% | |
| ATCTCCATGAGAATTCCTGA+TGG | + | chr5.3:4089665-4089684 | None:intergenic | 40.0% | |
| ATTGCATACTGAGTAAGGAC+AGG | + | chr5.3:4090211-4090230 | None:intergenic | 40.0% | |
| CACAATTGCGTCATTGAAGA+AGG | - | chr5.3:4092195-4092214 | MS.gene072801:intron | 40.0% | |
| CAGAAGATTAGAGGAGGAAA+TGG | - | chr5.3:4091544-4091563 | MS.gene072801:CDS | 40.0% | |
| CCATATCAGAAGATTAGAGG+AGG | - | chr5.3:4091538-4091557 | MS.gene072801:CDS | 40.0% | |
| CCTCAGGAAGCAAATTGTAA+AGG | - | chr5.3:4090749-4090768 | MS.gene072801:CDS | 40.0% | |
| CCTCCTCTAATCTTCTGATA+TGG | + | chr5.3:4091541-4091560 | None:intergenic | 40.0% | |
| CGAAAATCAGAAGAAGCTTG+GGG | - | chr5.3:4091970-4091989 | MS.gene072801:intron | 40.0% | |
| CGGTTCAAGATGGAAATTGT+CGG | - | chr5.3:4089368-4089387 | MS.gene072801:intron | 40.0% | |
| CTAGCTTATGTACAAGCTTG+TGG | + | chr5.3:4091355-4091374 | None:intergenic | 40.0% | |
| CTCGAAAATCAGAAGAAGCT+TGG | - | chr5.3:4091968-4091987 | MS.gene072801:intron | 40.0% | |
| GACACTCTTGAGGTTTCTTA+CGG | + | chr5.3:4093307-4093326 | None:intergenic | 40.0% | |
| GAGGAGATGAACACTCATAT+TGG | + | chr5.3:4091409-4091428 | None:intergenic | 40.0% | |
| GCGTCTACAGAAAAATCTAG+TGG | - | chr5.3:4091799-4091818 | MS.gene072801:intron | 40.0% | |
| GCTTGGGGAACAAGTTAATA+GGG | - | chr5.3:4091985-4092004 | MS.gene072801:CDS | 40.0% | |
| TACATCAAGGAACTGTGGAA+AGG | - | chr5.3:4092158-4092177 | MS.gene072801:intron | 40.0% | |
| TAGTTGACTGAAGCTCTTCT+TGG | + | chr5.3:4091844-4091863 | None:intergenic | 40.0% | |
| TCAAGATGGAAATTGTCGGT+GGG | - | chr5.3:4089372-4089391 | MS.gene072801:intron | 40.0% | |
| TCAAGGAACCAATTCAGCAA+CGG | - | chr5.3:4090038-4090057 | MS.gene072801:CDS | 40.0% | |
| TCAATAGTTCCTGGTGACAT+TGG | - | chr5.3:4089316-4089335 | MS.gene072801:CDS | 40.0% | |
| TCAATGTCATTCATAGCAGC+AGG | + | chr5.3:4091431-4091450 | None:intergenic | 40.0% | |
| TCATTTGCATTGAGAGTCTC+TGG | + | chr5.3:4091718-4091737 | None:intergenic | 40.0% | |
| TCTCCATGAGAATTCCTGAT+GGG | + | chr5.3:4089664-4089683 | None:intergenic | 40.0% | |
| TCTGCTCCAACATTTCTTCA+AGG | + | chr5.3:4091052-4091071 | None:intergenic | 40.0% | |
| TGAGTCTCTCAATCTCCAAT+GGG | + | chr5.3:4090671-4090690 | None:intergenic | 40.0% | |
| TGTTTAACTGTTCCTGCAGT+TGG | + | chr5.3:4091385-4091404 | None:intergenic | 40.0% | |
| TTCAAGATGGAAATTGTCGG+TGG | - | chr5.3:4089371-4089390 | MS.gene072801:intron | 40.0% | |
| TTCTCAAAATGCCCTTTCCA+AGG | - | chr5.3:4090626-4090645 | MS.gene072801:CDS | 40.0% | |
| TTGAGTCTCTCAATCTCCAA+TGG | + | chr5.3:4090672-4090691 | None:intergenic | 40.0% | |
| TTGGGAACTTTCCTTGGAAA+GGG | + | chr5.3:4090640-4090659 | None:intergenic | 40.0% | |
| TTTCTCAGTCCAATTTCGCA+GGG | + | chr5.3:4090432-4090451 | None:intergenic | 40.0% | |
| ! | AGCATTGGATGATCTTGTCA+AGG | - | chr5.3:4091181-4091200 | MS.gene072801:CDS | 40.0% |
| ! | CAGCATTGAGAAGAGATTCA+GGG | - | chr5.3:4092435-4092454 | MS.gene072801:CDS | 40.0% |
| ! | CCTTTACAATTTGCTTCCTG+AGG | + | chr5.3:4090752-4090771 | None:intergenic | 40.0% |
| ! | GCCATTTCTTTTGAATGCTG+AGG | + | chr5.3:4092532-4092551 | None:intergenic | 40.0% |
| ! | TTCCTGTTTCTCTGCATAAC+AGG | - | chr5.3:4090317-4090336 | MS.gene072801:CDS | 40.0% |
| ! | TTCTTTTGAATGCTGAGGAC+TGG | + | chr5.3:4092527-4092546 | None:intergenic | 40.0% |
| ! | TTTTCTCAGTCCAATTTCGC+AGG | + | chr5.3:4090433-4090452 | None:intergenic | 40.0% |
| !! | AAACCTCAAGAGTGTCCATA+AGG | - | chr5.3:4093311-4093330 | MS.gene072801:CDS | 40.0% |
| !! | AACCTCAAGAGTGTCCATAA+GGG | - | chr5.3:4093312-4093331 | MS.gene072801:CDS | 40.0% |
| !! | AACTGGAACAAACTGGTTTG+TGG | + | chr5.3:4090472-4090491 | None:intergenic | 40.0% |
| !! | ATTGGTTCTGTTAGGTTCTG+AGG | - | chr5.3:4088954-4088973 | MS.gene072801:CDS | 40.0% |
| !! | TCGGAATGTTACTTTACACG+AGG | - | chr5.3:4092858-4092877 | MS.gene072801:intron | 40.0% |
| !! | TTGGTGTTGTCAATAGTTCC+TGG | - | chr5.3:4089307-4089326 | MS.gene072801:CDS | 40.0% |
| !! | TTGGTTCTGTTAGGTTCTGA+GGG | - | chr5.3:4088955-4088974 | MS.gene072801:CDS | 40.0% |
| !!! | CTTCTGATTTTCGAGTTGCA+TGG | + | chr5.3:4091963-4091982 | None:intergenic | 40.0% |
| AAAGGAAAGCAAAAGAGGGC+AGG | - | chr5.3:4090767-4090786 | MS.gene072801:CDS | 45.0% | |
| AAATTGTCGGTGGGAGAATC+CGG | - | chr5.3:4089381-4089400 | MS.gene072801:intron | 45.0% | |
| AACAGGTCACAGTTGGAAAG+TGG | - | chr5.3:4090897-4090916 | MS.gene072801:CDS | 45.0% | |
| ACAATCAGGGGTAGATGCAT+TGG | - | chr5.3:4089288-4089307 | MS.gene072801:CDS | 45.0% | |
| ACGATGCCAAAGTGAGAAAC+AGG | - | chr5.3:4090880-4090899 | MS.gene072801:CDS | 45.0% | |
| AGCAGCATTTGGAGATTCTG+CGG | + | chr5.3:4090505-4090524 | None:intergenic | 45.0% | |
| AGTGAGAAACAGGTCACAGT+TGG | - | chr5.3:4090890-4090909 | MS.gene072801:CDS | 45.0% | |
| ATGGGAAGAGAGACATGAGA+GGG | + | chr5.3:4089646-4089665 | None:intergenic | 45.0% | |
| ATGTCATTCATAGCAGCAGG+AGG | + | chr5.3:4091428-4091447 | None:intergenic | 45.0% | |
| CATTTCTTCAAGGTCCTGCA+CGG | + | chr5.3:4091042-4091061 | None:intergenic | 45.0% | |
| CCTGAATCTCTTCTCAATGC+TGG | + | chr5.3:4092437-4092456 | None:intergenic | 45.0% | |
| CTCAAGCAAGTGTGTCTCTT+TGG | + | chr5.3:4091219-4091238 | None:intergenic | 45.0% | |
| CTTCCCATCAGGAATTCTCA+TGG | - | chr5.3:4089658-4089677 | MS.gene072801:CDS | 45.0% | |
| CTTGGGAACTTTCCTTGGAA+AGG | + | chr5.3:4090641-4090660 | None:intergenic | 45.0% | |
| GACCGAATTGTCGTCATTGA+AGG | - | chr5.3:4093173-4093192 | MS.gene072801:intron | 45.0% | |
| GAGAAAGCTACGGTTCAAGA+TGG | - | chr5.3:4089358-4089377 | MS.gene072801:intron | 45.0% | |
| GAGCCATAACTGGAACAAAC+TGG | + | chr5.3:4090479-4090498 | None:intergenic | 45.0% | |
| GAGTCTCTCAATCTCCAATG+GGG | + | chr5.3:4090670-4090689 | None:intergenic | 45.0% | |
| GCAGGACCTTGAAGAAATGT+TGG | - | chr5.3:4091043-4091062 | MS.gene072801:CDS | 45.0% | |
| GCCCTTCAAATTGGTTGTTC+AGG | - | chr5.3:4093065-4093084 | MS.gene072801:intron | 45.0% | |
| GGAACTCCAGAGCAGAATTA+TGG | - | chr5.3:4092807-4092826 | MS.gene072801:intron | 45.0% | |
| GTCAACTAAAGCCGATTACG+AGG | - | chr5.3:4091856-4091875 | MS.gene072801:intron | 45.0% | |
| GTTGATACTCCCTGCGAAAT+TGG | - | chr5.3:4090420-4090439 | MS.gene072801:CDS | 45.0% | |
| TACAGCTGAAAGGCTTCAAG+AGG | - | chr5.3:4091688-4091707 | MS.gene072801:CDS | 45.0% | |
| TAGACGCAGTTCACTTGCTT+CGG | + | chr5.3:4091786-4091805 | None:intergenic | 45.0% | |
| TATGGAGCTGGAGAACAAAG+TGG | - | chr5.3:4092825-4092844 | MS.gene072801:intron | 45.0% | |
| TCAGAGCTCGGGTTAAGTAT+GGG | - | chr5.3:4090588-4090607 | MS.gene072801:CDS | 45.0% | |
| TCAGATACAGCAGATGTTGG+TGG | - | chr5.3:4091922-4091941 | MS.gene072801:intron | 45.0% | |
| TGCGTCATTGAAGAAGGAAG+CGG | - | chr5.3:4092201-4092220 | MS.gene072801:intron | 45.0% | |
| TGTATCGCGTTCGTGTCTAT+TGG | + | chr5.3:4091099-4091118 | None:intergenic | 45.0% | |
| TTATCAAAAGCTAGCGCGGT+CGG | - | chr5.3:4089577-4089596 | MS.gene072801:CDS | 45.0% | |
| TTCCAAGGAAAGTTCCCAAG+AGG | - | chr5.3:4090641-4090660 | MS.gene072801:CDS | 45.0% | |
| TTGTCTTTCACCTTCGACCT+CGG | + | chr5.3:4093271-4093290 | None:intergenic | 45.0% | |
| ! | CCAGCATTGAGAAGAGATTC+AGG | - | chr5.3:4092434-4092453 | MS.gene072801:CDS | 45.0% |
| ! | CTGTGACCTGTTTCTCACTT+TGG | + | chr5.3:4090889-4090908 | None:intergenic | 45.0% |
| ! | GAGGCATTAACAGCAGCATT+TGG | + | chr5.3:4090516-4090535 | None:intergenic | 45.0% |
| ! | TCAAGTTCTGATGACAGCTC+TGG | - | chr5.3:4090396-4090415 | MS.gene072801:CDS | 45.0% |
| !! | CAAAGCTGAACTTGCTGCTT+TGG | - | chr5.3:4090689-4090708 | MS.gene072801:CDS | 45.0% |
| !! | GAACAAACTGGTTTGTGGTG+GGG | + | chr5.3:4090467-4090486 | None:intergenic | 45.0% |
| !! | GGAACAAACTGGTTTGTGGT+GGG | + | chr5.3:4090468-4090487 | None:intergenic | 45.0% |
| !! | TAAATCATGCATCGGTGTCG+AGG | + | chr5.3:4090535-4090554 | None:intergenic | 45.0% |
| !! | TGGAACAAACTGGTTTGTGG+TGG | + | chr5.3:4090469-4090488 | None:intergenic | 45.0% |
| !!! | ATTTTTTTTTTTATTCTTAA+TGG | - | chr5.3:4089187-4089206 | MS.gene072801:intron | 5.0% |
| AAGAGGGCAGGATCTCATGA+AGG | - | chr5.3:4090779-4090798 | MS.gene072801:CDS | 50.0% | |
| ACATGGAACTACAGACCCTC+AGG | - | chr5.3:4090733-4090752 | MS.gene072801:CDS | 50.0% | |
| AGAACTCAAGGAGCAGTCAG+AGG | - | chr5.3:4091475-4091494 | MS.gene072801:CDS | 50.0% | |
| AGAGACATGAGAGGGCTTTG+TGG | + | chr5.3:4089638-4089657 | None:intergenic | 50.0% | |
| AGCCCTTATGGACACTCTTG+AGG | + | chr5.3:4093317-4093336 | None:intergenic | 50.0% | |
| CAGGTCTTTCCACAAACGCA+TGG | - | chr5.3:4090857-4090876 | MS.gene072801:CDS | 50.0% | |
| CCAGAGCAGAATTATGGAGC+TGG | - | chr5.3:4092813-4092832 | MS.gene072801:intron | 50.0% | |
| CCAGCTCCATAATTCTGCTC+TGG | + | chr5.3:4092816-4092835 | None:intergenic | 50.0% | |
| CTCAAATTTGCCGAGGTCGA+AGG | - | chr5.3:4093258-4093277 | MS.gene072801:intron | 50.0% | |
| CTCAGAGCTCGGGTTAAGTA+TGG | - | chr5.3:4090587-4090606 | MS.gene072801:CDS | 50.0% | |
| CTCATGTCTCTCTTCCCATC+AGG | - | chr5.3:4089647-4089666 | MS.gene072801:CDS | 50.0% | |
| CTGTATCGCCGTTGCTGAAT+TGG | + | chr5.3:4090049-4090068 | None:intergenic | 50.0% | |
| GATGGGAAGAGAGACATGAG+AGG | + | chr5.3:4089647-4089666 | None:intergenic | 50.0% | |
| GGACGCAACCAACTTTCTGA+TGG | - | chr5.3:4092466-4092485 | MS.gene072801:CDS | 50.0% | |
| GGGGTTATCAAAAGCTAGCG+CGG | - | chr5.3:4089573-4089592 | MS.gene072801:CDS | 50.0% | |
| GGTCTTTCGCAATGCTTCCT+CGG | + | chr5.3:4091651-4091670 | None:intergenic | 50.0% | |
| TATCAAAAGCTAGCGCGGTC+GGG | - | chr5.3:4089578-4089597 | MS.gene072801:CDS | 50.0% | |
| TGCCTCTTGGGAACTTTCCT+TGG | + | chr5.3:4090646-4090665 | None:intergenic | 50.0% | |
| ! | CACGCGGACAATAGTCTTAG+TGG | - | chr5.3:4093144-4093163 | MS.gene072801:intron | 50.0% |
| ! | TCGTCATCTAGCTCAGAGCT+CGG | - | chr5.3:4090576-4090595 | MS.gene072801:CDS | 50.0% |
| ! | TGAATTGGTTCTTGCCGTGC+AGG | - | chr5.3:4091025-4091044 | MS.gene072801:CDS | 50.0% |
| !! | GTTGGTCTTCCAATGTCACC+AGG | + | chr5.3:4089328-4089347 | None:intergenic | 50.0% |
| ATCAAAAGCTAGCGCGGTCG+GGG | - | chr5.3:4089579-4089598 | MS.gene072801:CDS | 55.0% | |
| CTCCAATGGGGATGCCTCTT+GGG | + | chr5.3:4090658-4090677 | None:intergenic | 55.0% | |
| GCACATGGATGTGTCGGACA+TGG | - | chr5.3:4090716-4090735 | MS.gene072801:CDS | 55.0% | |
| GCTAGAGCAAAGCCAACTGC+AGG | - | chr5.3:4091370-4091389 | MS.gene072801:CDS | 55.0% | |
| GGAGCTGGAGAACAAAGTGG+AGG | - | chr5.3:4092828-4092847 | MS.gene072801:intron | 55.0% | |
| TCTCCAATGGGGATGCCTCT+TGG | + | chr5.3:4090659-4090678 | None:intergenic | 55.0% | |
| TGCTTCGGTCAATGCTCTCG+TGG | + | chr5.3:4091771-4091790 | None:intergenic | 55.0% | |
| TGGCATCGTCCATGCGTTTG+TGG | + | chr5.3:4090869-4090888 | None:intergenic | 55.0% | |
| TTCGCAATGCTTCCTCGGCT+TGG | + | chr5.3:4091646-4091665 | None:intergenic | 55.0% | |
| ! | CGTCATCTAGCTCAGAGCTC+GGG | - | chr5.3:4090577-4090596 | MS.gene072801:CDS | 55.0% |
| !! | CAATGCTTCCTCGGCTTGGA+TGG | + | chr5.3:4091642-4091661 | None:intergenic | 55.0% |
| !! | CTGAACTTGCTGCTTTGGCG+AGG | - | chr5.3:4090694-4090713 | MS.gene072801:CDS | 55.0% |
| !! | TTCCCAAGAGGCATCCCCAT+TGG | - | chr5.3:4090653-4090672 | MS.gene072801:CDS | 55.0% |
| GCAAAGAGCCATCCAAGCCG+AGG | - | chr5.3:4091631-4091650 | MS.gene072801:CDS | 60.0% | |
| GGCGAGGCACATGGATGTGT+CGG | - | chr5.3:4090710-4090729 | MS.gene072801:CDS | 60.0% | |
| TCTGCGGCACGAGCCATAAC+TGG | + | chr5.3:4090489-4090508 | None:intergenic | 60.0% | |
| !! | TGCTGCTTTGGCGAGGCACA+TGG | - | chr5.3:4090701-4090720 | MS.gene072801:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 4088739 | 4093338 | 4088739 | ID=MS.gene072801 |
| chr5.3 | mRNA | 4088739 | 4093338 | 4088739 | ID=MS.gene072801.t1;Parent=MS.gene072801 |
| chr5.3 | exon | 4093261 | 4093338 | 4093261 | ID=MS.gene072801.t1.exon1;Parent=MS.gene072801.t1 |
| chr5.3 | CDS | 4093261 | 4093338 | 4093261 | ID=cds.MS.gene072801.t1;Parent=MS.gene072801.t1 |
| chr5.3 | exon | 4092594 | 4092794 | 4092594 | ID=MS.gene072801.t1.exon2;Parent=MS.gene072801.t1 |
| chr5.3 | CDS | 4092594 | 4092794 | 4092594 | ID=cds.MS.gene072801.t1;Parent=MS.gene072801.t1 |
| chr5.3 | exon | 4092381 | 4092503 | 4092381 | ID=MS.gene072801.t1.exon3;Parent=MS.gene072801.t1 |
| chr5.3 | CDS | 4092381 | 4092503 | 4092381 | ID=cds.MS.gene072801.t1;Parent=MS.gene072801.t1 |
| chr5.3 | exon | 4092204 | 4092247 | 4092204 | ID=MS.gene072801.t1.exon4;Parent=MS.gene072801.t1 |
| chr5.3 | CDS | 4092204 | 4092247 | 4092204 | ID=cds.MS.gene072801.t1;Parent=MS.gene072801.t1 |
| chr5.3 | exon | 4091980 | 4092088 | 4091980 | ID=MS.gene072801.t1.exon5;Parent=MS.gene072801.t1 |
| chr5.3 | CDS | 4091980 | 4092088 | 4091980 | ID=cds.MS.gene072801.t1;Parent=MS.gene072801.t1 |
| chr5.3 | exon | 4089495 | 4091738 | 4089495 | ID=MS.gene072801.t1.exon6;Parent=MS.gene072801.t1 |
| chr5.3 | CDS | 4089495 | 4091738 | 4089495 | ID=cds.MS.gene072801.t1;Parent=MS.gene072801.t1 |
| chr5.3 | exon | 4089198 | 4089335 | 4089198 | ID=MS.gene072801.t1.exon7;Parent=MS.gene072801.t1 |
| chr5.3 | CDS | 4089198 | 4089335 | 4089198 | ID=cds.MS.gene072801.t1;Parent=MS.gene072801.t1 |
| chr5.3 | exon | 4088739 | 4088990 | 4088739 | ID=MS.gene072801.t1.exon8;Parent=MS.gene072801.t1 |
| chr5.3 | CDS | 4088739 | 4088990 | 4088739 | ID=cds.MS.gene072801.t1;Parent=MS.gene072801.t1 |
| Gene Sequence |
| Protein sequence |
