Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048780.t1 | XP_013447020.2 | 89 | 996 | 102 | 1 | 1 | 996 | 1 | 988 | 0.00E+00 | 1233.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048780.t1 | A0A396GWY6 | 89.0 | 996 | 102 | 1 | 1 | 996 | 1 | 988 | 0.0e+00 | 1233.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene94379 | MS.gene048780 | PPI |
| MS.gene006300 | MS.gene048780 | PPI |
| MS.gene34485 | MS.gene048780 | PPI |
| MS.gene55940 | MS.gene048780 | PPI |
| MS.gene41427 | MS.gene048780 | PPI |
| MS.gene00106 | MS.gene048780 | PPI |
| MS.gene43975 | MS.gene048780 | PPI |
| MS.gene048780 | MS.gene005105 | PPI |
| MS.gene073110 | MS.gene048780 | PPI |
| MS.gene91501 | MS.gene048780 | PPI |
| MS.gene93911 | MS.gene048780 | PPI |
| MS.gene67841 | MS.gene048780 | PPI |
| MS.gene93915 | MS.gene048780 | PPI |
| MS.gene48616 | MS.gene048780 | PPI |
| MS.gene036437 | MS.gene048780 | PPI |
| MS.gene033776 | MS.gene048780 | PPI |
| MS.gene93913 | MS.gene048780 | PPI |
| MS.gene048780 | MS.gene35346 | PPI |
| MS.gene048780 | MS.gene94636 | PPI |
| MS.gene058289 | MS.gene048780 | PPI |
| MS.gene49082 | MS.gene048780 | PPI |
| MS.gene048780 | MS.gene043158 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048780.t1 | MTR_8g097350 | 90.571 | 1103 | 33 | 5 | 1 | 1103 | 1 | 1032 | 0.0 | 1977 |
| MS.gene048780.t1 | MTR_8g097350 | 96.432 | 981 | 27 | 1 | 1 | 981 | 1 | 973 | 0.0 | 1914 |
| MS.gene048780.t1 | MTR_5g010520 | 62.400 | 1125 | 338 | 10 | 1 | 1103 | 1 | 1062 | 0.0 | 1266 |
| MS.gene048780.t1 | MTR_5g010520 | 64.129 | 959 | 299 | 8 | 1 | 937 | 1 | 936 | 0.0 | 1126 |
| MS.gene048780.t1 | MTR_0415s0020 | 97.239 | 326 | 9 | 0 | 555 | 880 | 16 | 341 | 0.0 | 623 |
| MS.gene048780.t1 | MTR_0415s0010 | 93.377 | 302 | 12 | 1 | 183 | 484 | 1 | 294 | 0.0 | 547 |
| MS.gene048780.t1 | MTR_1g100633 | 37.806 | 775 | 395 | 12 | 1 | 766 | 1 | 697 | 6.06e-142 | 447 |
| MS.gene048780.t1 | MTR_1g100633 | 37.806 | 775 | 395 | 12 | 1 | 766 | 1 | 697 | 9.82e-142 | 446 |
| MS.gene048780.t1 | MTR_1g100633 | 37.806 | 775 | 395 | 12 | 1 | 766 | 1 | 697 | 2.85e-141 | 447 |
| MS.gene048780.t1 | MTR_1g100633 | 70.909 | 55 | 16 | 0 | 1048 | 1102 | 798 | 852 | 1.33e-15 | 82.4 |
| MS.gene048780.t1 | MTR_1g062200 | 26.226 | 469 | 301 | 14 | 1 | 456 | 1 | 437 | 4.57e-24 | 110 |
| MS.gene048780.t1 | MTR_1g062200 | 26.226 | 469 | 301 | 14 | 1 | 456 | 1 | 437 | 5.01e-24 | 110 |
| MS.gene048780.t1 | MTR_1g090807 | 23.246 | 499 | 327 | 14 | 5 | 479 | 30 | 496 | 7.43e-17 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene048780.t1 | AT1G63300 | 45.181 | 1131 | 490 | 21 | 1 | 1103 | 1 | 1029 | 0.0 | 798 |
| MS.gene048780.t1 | AT5G41140 | 44.414 | 1110 | 474 | 20 | 1 | 1102 | 1 | 975 | 0.0 | 780 |
| MS.gene048780.t1 | AT5G41140 | 44.865 | 1110 | 476 | 21 | 1 | 1102 | 1 | 982 | 0.0 | 780 |
| MS.gene048780.t1 | AT5G52280 | 35.816 | 913 | 438 | 19 | 1 | 902 | 1 | 776 | 8.07e-137 | 435 |
| MS.gene048780.t1 | AT5G52280 | 30.790 | 367 | 189 | 17 | 786 | 1102 | 501 | 852 | 2.30e-13 | 75.1 |
| MS.gene048780.t1 | AT1G22060 | 26.188 | 989 | 544 | 33 | 3 | 929 | 6 | 870 | 1.21e-46 | 184 |
| MS.gene048780.t1 | AT1G22060 | 52.542 | 59 | 28 | 0 | 1045 | 1103 | 1927 | 1985 | 3.79e-11 | 68.6 |
| MS.gene048780.t1 | AT1G22060 | 26.188 | 989 | 544 | 33 | 3 | 929 | 6 | 870 | 1.21e-46 | 184 |
| MS.gene048780.t1 | AT1G22060 | 52.542 | 59 | 28 | 0 | 1045 | 1103 | 1927 | 1985 | 3.79e-11 | 68.6 |
Find 182 sgRNAs with CRISPR-Local
Find 275 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCCTCCAGTTCCTCAATTT+TGG | 0.100815 | 4.3:+6289405 | None:intergenic |
| TTTAGTCTGTTTGTAATTAT+TGG | 0.149429 | 4.3:+6291121 | None:intergenic |
| AGCATCGGCTTCTTCATATT+TGG | 0.200944 | 4.3:-6289449 | MS.gene048780:CDS |
| TCTCAGATCTGTCATTTCTT+TGG | 0.222739 | 4.3:+6289729 | None:intergenic |
| CATCAATAAGAGAATGTTTC+AGG | 0.227998 | 4.3:+6289890 | None:intergenic |
| TCATGTATATCGGAAGAAAA+TGG | 0.240483 | 4.3:-6288890 | MS.gene048780:CDS |
| TCACTAAATTTCCCATTCTT+AGG | 0.251223 | 4.3:+6292806 | None:intergenic |
| TTCATGATGGAAATTGTAAA+TGG | 0.253945 | 4.3:-6292868 | MS.gene048780:CDS |
| GCAATCTGGTGTGGATTCTT+TGG | 0.281309 | 4.3:-6292951 | MS.gene048780:CDS |
| TTGGTACTCTCTATAGTTCC+TGG | 0.288824 | 4.3:-6292932 | MS.gene048780:CDS |
| TTATCAAAAGCTAGTATCTT+TGG | 0.299529 | 4.3:-6292653 | MS.gene048780:CDS |
| GGTATTTCTGCTTCTTTCTC+TGG | 0.307986 | 4.3:+6288675 | None:intergenic |
| TGAACTAGTTCTTGCTGTTC+AGG | 0.309083 | 4.3:-6291192 | MS.gene048780:CDS |
| CCATCTTATATGCAAATTCA+TGG | 0.311512 | 4.3:+6290871 | None:intergenic |
| TACAAGAAAATAGTGATAAA+AGG | 0.318196 | 4.3:-6292366 | MS.gene048780:intron |
| GGTCACTTGATGAGCTAAAT+AGG | 0.319780 | 4.3:-6289996 | MS.gene048780:CDS |
| TCTATAGTTCCTGGAGATAA+TGG | 0.322135 | 4.3:-6292923 | MS.gene048780:CDS |
| CAAGGCTGAAGTTGCTGCTT+TGG | 0.329744 | 4.3:-6291528 | MS.gene048780:CDS |
| TGAAGCTGTTAAGTTTAATC+AGG | 0.338510 | 4.3:-6292831 | MS.gene048780:CDS |
| CCTCCTCTAACTTGCGGATC+TGG | 0.350616 | 4.3:+6290685 | None:intergenic |
| TTGCCATTACTATCCATTAC+TGG | 0.360182 | 4.3:+6288654 | None:intergenic |
| ATCAGAGATCATCACATTTC+CGG | 0.360321 | 4.3:-6291667 | MS.gene048780:CDS |
| TGCTCAGCTGGTTCAGAACT+TGG | 0.368716 | 4.3:-6291641 | MS.gene048780:CDS |
| CTTGATACTCCCCGAGAACT+TGG | 0.369394 | 4.3:-6291803 | MS.gene048780:CDS |
| TCAGAGATCATCACATTTCC+GGG | 0.373245 | 4.3:-6291666 | MS.gene048780:CDS |
| CCGCAAGTTAGAGGAGGAAC+TGG | 0.375739 | 4.3:-6290679 | MS.gene048780:CDS |
| CAATGATACTTCATGTATAT+CGG | 0.381401 | 4.3:-6288900 | MS.gene048780:CDS |
| TTCAGAACTTGGTCTGAGTA+TGG | 0.384315 | 4.3:-6291630 | MS.gene048780:CDS |
| CATGTATATCGGAAGAAAAT+GGG | 0.384436 | 4.3:-6288889 | MS.gene048780:CDS |
| AACTTAACAGCTTCATAAAC+AGG | 0.386417 | 4.3:+6292839 | None:intergenic |
| TCAATCCAAAATTGAGGAAC+TGG | 0.391550 | 4.3:-6289410 | MS.gene048780:CDS |
| TATATCTCCAGTGCTTAAAT+AGG | 0.392273 | 4.3:+6292172 | None:intergenic |
| AACTCAATGATAGGAGCTTA+AGG | 0.401210 | 4.3:-6292196 | MS.gene048780:CDS |
| AGACGATGAACAGAAAGAAT+TGG | 0.403642 | 4.3:-6291057 | MS.gene048780:CDS |
| GCTTTCTCTAATCTTGTAGT+TGG | 0.404902 | 4.3:+6292896 | None:intergenic |
| CTAAGTCAGCTTCAAATCCT+TGG | 0.409289 | 4.3:+6290646 | None:intergenic |
| GAACCAGATCCGCAAGTTAG+AGG | 0.409504 | 4.3:-6290688 | MS.gene048780:CDS |
| CTCTACATCCGCTGCCTGAT+GGG | 0.410650 | 4.3:+6291562 | None:intergenic |
| CTCAAGTAAGTGTGTCTCCT+TGG | 0.410803 | 4.3:+6291007 | None:intergenic |
| TATTTCTTAGTCCAAGTTCT+CGG | 0.414133 | 4.3:+6291792 | None:intergenic |
| CTCAAATTTGCAGAGGTAGA+AGG | 0.414746 | 4.3:-6288525 | MS.gene048780:CDS |
| ATTTCTTAGTCCAAGTTCTC+GGG | 0.415269 | 4.3:+6291793 | None:intergenic |
| TCTTCAGTTCATCGTTAAGA+TGG | 0.416884 | 4.3:+6289830 | None:intergenic |
| TCAGATGCAACAGATGTTGT+TGG | 0.420026 | 4.3:-6290301 | MS.gene048780:CDS |
| CTGAAGTTGCTGCTTTGGCC+AGG | 0.421147 | 4.3:-6291523 | MS.gene048780:CDS |
| TGAAACACATATCCAGAATC+TGG | 0.422058 | 4.3:-6290775 | MS.gene048780:CDS |
| TACAATTGCTTTGTTGAAGA+AGG | 0.422105 | 4.3:-6290028 | MS.gene048780:CDS |
| CATTTCCGGGACTGCTCAGC+TGG | 0.426590 | 4.3:-6291653 | MS.gene048780:CDS |
| AGTGAGTAGCAGATCACAAT+TGG | 0.427743 | 4.3:-6291327 | MS.gene048780:CDS |
| TGCTTCTGTCAGCGCTCTCC+TGG | 0.429455 | 4.3:+6290455 | None:intergenic |
| TTTAATCAGGATCCTAAGAA+TGG | 0.430226 | 4.3:-6292818 | MS.gene048780:CDS |
| TCCCATCAAGAATTCTCATT+CGG | 0.430666 | 4.3:-6292570 | MS.gene048780:CDS |
| AGACATTTCTCCCTAAATCA+TGG | 0.435733 | 4.3:+6291093 | None:intergenic |
| AAAATCAAAGGAGACTGCTT+TGG | 0.436264 | 4.3:-6289473 | MS.gene048780:CDS |
| TTAAGCACTGGAGATATAGA+TGG | 0.437350 | 4.3:-6292167 | MS.gene048780:CDS |
| AGAATTGGATGAGCTTGTTA+AGG | 0.441376 | 4.3:-6291042 | MS.gene048780:CDS |
| TAAGTCAGCTTCAAATCCTT+GGG | 0.449405 | 4.3:+6290647 | None:intergenic |
| GAAGGAGCACCATTTGTTGT+AGG | 0.449517 | 4.3:+6291758 | None:intergenic |
| TCAAGTTCCGATGGAAGCTC+TGG | 0.453777 | 4.3:-6291827 | MS.gene048780:CDS |
| TCCAGCTCTTGTGTTTGCAT+TGG | 0.461122 | 4.3:+6291895 | None:intergenic |
| ACATGGAACTTCAAACTCTT+CGG | 0.462481 | 4.3:-6291484 | MS.gene048780:CDS |
| CTGAACCAGCTGAGCAGTCC+CGG | 0.463105 | 4.3:+6291648 | None:intergenic |
| AGTTGCTGCTTTGGCCAGGC+AGG | 0.463456 | 4.3:-6291519 | MS.gene048780:CDS |
| CTCTCAAGATGCCCTTCCTC+GGG | 0.464252 | 4.3:-6291591 | MS.gene048780:CDS |
| GGATGAATTCTCAAATTCTC+TGG | 0.465792 | 4.3:-6290730 | MS.gene048780:CDS |
| GTCTGACACATCCACCTGCC+TGG | 0.469758 | 4.3:+6291505 | None:intergenic |
| CCATGAATTTGCATATAAGA+TGG | 0.474720 | 4.3:-6290871 | MS.gene048780:CDS |
| GCCAATGCAAACACAAGAGC+TGG | 0.476631 | 4.3:-6291896 | MS.gene048780:CDS |
| CACATCTCTTGTGTTTGCAT+TGG | 0.480579 | 4.3:+6291922 | None:intergenic |
| TAATTTCAGGTGCTGCAATC+TGG | 0.483291 | 4.3:-6292965 | MS.gene048780:intron |
| TCATGATGGAAATTGTAAAT+GGG | 0.485115 | 4.3:-6292867 | MS.gene048780:CDS |
| AGCATCCACCCTACAACAAA+TGG | 0.485951 | 4.3:-6291767 | MS.gene048780:CDS |
| GCAGATGGAGCAGCTTGCAC+TGG | 0.486211 | 4.3:-6290919 | MS.gene048780:CDS |
| CTGGATTGAGTGCTGATTGT+AGG | 0.487970 | 4.3:-6291877 | MS.gene048780:CDS |
| AGAAGCAGAAATACCAGTAA+TGG | 0.488162 | 4.3:-6288667 | MS.gene048780:CDS |
| TCTCTACATCCGCTGCCTGA+TGG | 0.489393 | 4.3:+6291561 | None:intergenic |
| TCCTCGGGAAAGTTCCCATC+AGG | 0.490245 | 4.3:-6291576 | MS.gene048780:CDS |
| CTTCAAAATCTTGCTGTGGA+TGG | 0.491798 | 4.3:-6291713 | MS.gene048780:CDS |
| AGCACGAGGAACAAGTTGGC+AGG | 0.494013 | 4.3:-6290239 | MS.gene048780:CDS |
| GCTCTCAAGATGCCCTTCCT+CGG | 0.494210 | 4.3:-6291592 | MS.gene048780:CDS |
| TTGAAGCTCTGAAGAGTGGC+TGG | 0.496987 | 4.3:+6291730 | None:intergenic |
| TGCTGCTTTGGCCAGGCAGG+TGG | 0.498919 | 4.3:-6291516 | MS.gene048780:CDS |
| GAATGCTCTTCTCCTCCTCC+TGG | 0.498944 | 4.3:-6290810 | MS.gene048780:CDS |
| TTCGTTTGCGAAAAGATTTG+AGG | 0.499440 | 4.3:+6291363 | None:intergenic |
| AGAAATCTTAAGTTCTGACT+TGG | 0.501338 | 4.3:-6290127 | MS.gene048780:CDS |
| GGAGACTGCTTTGGAAGCAT+CGG | 0.501587 | 4.3:-6289464 | MS.gene048780:CDS |
| ATCGGAAGAAAATGGGGTTG+TGG | 0.503083 | 4.3:-6288882 | MS.gene048780:CDS |
| CAAAGCTTCCTCAGCTCGAA+TGG | 0.504131 | 4.3:+6290584 | None:intergenic |
| ATCAGTCAAAGCCGATTATG+AGG | 0.504634 | 4.3:-6290367 | MS.gene048780:CDS |
| ATCCGAATGAGAATTCTTGA+TGG | 0.505562 | 4.3:+6292568 | None:intergenic |
| TAACATTTGCAGAGAGGAGG+AGG | 0.507929 | 4.3:-6292240 | MS.gene048780:intron |
| TAAGAAGCCTCAAGAATGCT+AGG | 0.509109 | 4.3:-6288476 | MS.gene048780:CDS |
| AAATCAACTCAAGAAACAAT+CGG | 0.509218 | 4.3:-6290751 | MS.gene048780:CDS |
| ATGGTGAGATAGAGATGTAT+AGG | 0.523635 | 4.3:-6290965 | MS.gene048780:CDS |
| AGCCCTTCCTAGCATTCTTG+AGG | 0.524438 | 4.3:+6288469 | None:intergenic |
| ATCGTAAAGGAAAGCAAAAG+AGG | 0.525734 | 4.3:-6291455 | MS.gene048780:CDS |
| GGCTTCTTCATATTTGGAGA+AGG | 0.526343 | 4.3:-6289443 | MS.gene048780:CDS |
| AAGCCTCAAGAATGCTAGGA+AGG | 0.527879 | 4.3:-6288472 | MS.gene048780:CDS |
| AGTATGGACGGTTCAATACA+TGG | 0.528292 | 4.3:-6291614 | MS.gene048780:CDS |
| GGCTTCAAGAAGAATTCAAA+AGG | 0.530246 | 4.3:-6290524 | MS.gene048780:CDS |
| TTAATCAGGATCCTAAGAAT+GGG | 0.531828 | 4.3:-6292817 | MS.gene048780:CDS |
| AAGGAGCACCATTTGTTGTA+GGG | 0.532047 | 4.3:+6291759 | None:intergenic |
| TCGTGTGCAGAAGAGACTAC+TGG | 0.533605 | 4.3:-6290424 | MS.gene048780:CDS |
| ATGCAAATGAGACGGCTACC+AGG | 0.533949 | 4.3:-6290473 | MS.gene048780:CDS |
| TTAAGGACCTATTTAAGCAC+TGG | 0.534125 | 4.3:-6292179 | MS.gene048780:CDS |
| ATTCATTCAAAATGTTCAGA+TGG | 0.538552 | 4.3:-6293199 | None:intergenic |
| GACACATGACAAAGTTAAGC+AGG | 0.540859 | 4.3:-6290616 | MS.gene048780:CDS |
| GCAGATCACAATTGGAAGGT+GGG | 0.541610 | 4.3:-6291319 | MS.gene048780:CDS |
| GAAAGAAAGAGACAAATCAA+TGG | 0.549242 | 4.3:-6288592 | MS.gene048780:CDS |
| CAAGGATGAAGAGGAGAAAG+TGG | 0.551905 | 4.3:-6289962 | MS.gene048780:CDS |
| GATGGGAACTTTCCCGAGGA+AGG | 0.551943 | 4.3:+6291579 | None:intergenic |
| AAAGGAAAGCAAAAGAGGGC+AGG | 0.553150 | 4.3:-6291450 | MS.gene048780:CDS |
| GAGAAAGCTATAGTTCATGA+TGG | 0.553319 | 4.3:-6292881 | MS.gene048780:CDS |
| GGAAGTTATCAGCTTGAAAG+AGG | 0.554330 | 4.3:-6291417 | MS.gene048780:CDS |
| AGAACTTCAATCCAAAATTG+AGG | 0.555244 | 4.3:-6289416 | MS.gene048780:CDS |
| GACATTTCTCCCTAAATCAT+GGG | 0.557392 | 4.3:+6291094 | None:intergenic |
| TAACGATGAACTGAAGAAGA+AGG | 0.562401 | 4.3:-6289824 | MS.gene048780:CDS |
| GTGCTTCAAACAGGTTGTTG+CGG | 0.562680 | 4.3:-6288984 | MS.gene048780:intron |
| TCTTCGGAAACAAATCGTAA+AGG | 0.563402 | 4.3:-6291468 | MS.gene048780:CDS |
| AAGTCATTTATACCAGGAGG+AGG | 0.563516 | 4.3:+6290798 | None:intergenic |
| TTGTGGTGTCATCAGTCAAG+AGG | 0.564972 | 4.3:-6288865 | MS.gene048780:intron |
| AATTAACATTTGCAGAGAGG+AGG | 0.568188 | 4.3:-6292243 | MS.gene048780:intron |
| AGATGAGTTAGAGATGCAGA+TGG | 0.572394 | 4.3:-6290934 | MS.gene048780:CDS |
| GCTGATTGTAGGACATCTAG+TGG | 0.573852 | 4.3:-6291866 | MS.gene048780:CDS |
| AGCCTCAAGAATGCTAGGAA+GGG | 0.578599 | 4.3:-6288471 | MS.gene048780:CDS |
| CTCATTTGCATCAAATGTAG+TGG | 0.579737 | 4.3:+6290485 | None:intergenic |
| GGAAAGTTCCCATCAGGCAG+CGG | 0.580002 | 4.3:-6291570 | MS.gene048780:CDS |
| GTTTCAAAGTCATTTATACC+AGG | 0.583051 | 4.3:+6290792 | None:intergenic |
| ATGGGAACTTTCCCGAGGAA+GGG | 0.586539 | 4.3:+6291580 | None:intergenic |
| CAAAAGGCTATCAATGCAGA+TGG | 0.586827 | 4.3:-6290508 | MS.gene048780:CDS |
| GATGCATCTCAAGGATGAAG+AGG | 0.587248 | 4.3:-6289971 | MS.gene048780:CDS |
| GAGCACCATTTGTTGTAGGG+TGG | 0.591831 | 4.3:+6291762 | None:intergenic |
| ATACCAGTAATGGATAGTAA+TGG | 0.592797 | 4.3:-6288657 | MS.gene048780:CDS |
| TGAGGAACTGGAGGACAAAG+TGG | 0.595036 | 4.3:-6289398 | MS.gene048780:CDS |
| CATTCAAAATGTTCAGATGG+AGG | 0.595398 | 4.3:-6293196 | None:intergenic |
| CTGGTTCTCAAGAGACTCGA+TGG | 0.595679 | 4.3:+6290704 | None:intergenic |
| CCAGTTCCTCCTCTAACTTG+CGG | 0.595754 | 4.3:+6290679 | None:intergenic |
| GCAAAGAGCCATTCGAGCTG+AGG | 0.597598 | 4.3:-6290592 | MS.gene048780:CDS |
| AGCAGATCACAATTGGAAGG+TGG | 0.598653 | 4.3:-6291320 | MS.gene048780:CDS |
| TCCGAATGAGAATTCTTGAT+GGG | 0.599669 | 4.3:+6292569 | None:intergenic |
| GAAGAGTGGCTGGTGACTGA+AGG | 0.602498 | 4.3:+6291740 | None:intergenic |
| AGAGCTTCAAAATCTTGCTG+TGG | 0.602851 | 4.3:-6291717 | MS.gene048780:CDS |
| ATCCAAAATTGAGGAACTGG+AGG | 0.603562 | 4.3:-6289407 | MS.gene048780:CDS |
| ATTACAATGTCAAGTTCCGA+TGG | 0.606268 | 4.3:-6291836 | MS.gene048780:CDS |
| AAATAGGATGATGCATCTCA+AGG | 0.610535 | 4.3:-6289980 | MS.gene048780:CDS |
| ACAGGACCTGATAAAATCAA+AGG | 0.611635 | 4.3:-6289485 | MS.gene048780:intron |
| CTGTTGCATCTGAACTGTCA+TGG | 0.612030 | 4.3:+6290311 | None:intergenic |
| TACATTTGATGCAAATGAGA+CGG | 0.612659 | 4.3:-6290481 | MS.gene048780:CDS |
| GCACGAGGAACAAGTTGGCA+GGG | 0.612830 | 4.3:-6290238 | MS.gene048780:CDS |
| TCAGAGCATTGCTTTGCCAA+AGG | 0.613432 | 4.3:-6289365 | MS.gene048780:intron |
| CAGATCACAATTGGAAGGTG+GGG | 0.613615 | 4.3:-6291318 | MS.gene048780:CDS |
| TCAGGTGCTGCAATCTGGTG+TGG | 0.614625 | 4.3:-6292960 | MS.gene048780:intron |
| GAACTTGGTCTGAGTATGGA+CGG | 0.616193 | 4.3:-6291626 | MS.gene048780:CDS |
| GCAGGTGGATGTGTCAGACA+TGG | 0.623993 | 4.3:-6291501 | MS.gene048780:CDS |
| ATCAAGTCCAGAGCTTCCAT+CGG | 0.625295 | 4.3:+6291820 | None:intergenic |
| ACTTATGAAGAAATCACTTG+AGG | 0.632005 | 4.3:-6290103 | MS.gene048780:CDS |
| TCAAAGTCATTTATACCAGG+AGG | 0.633961 | 4.3:+6290795 | None:intergenic |
| TTTCCATCTCACTCTCACTC+AGG | 0.635068 | 4.3:-6293135 | MS.gene048780:intron |
| GTAATGGATAGTAATGGCAA+TGG | 0.635117 | 4.3:-6288651 | MS.gene048780:CDS |
| ACAAGAATTGAATCACGAGA+AGG | 0.636953 | 4.3:-6291267 | MS.gene048780:CDS |
| GTACCTGAGTGAGAGTGAGA+TGG | 0.637352 | 4.3:+6293132 | None:intergenic |
| AGTAGCAGATCACAATTGGA+AGG | 0.637940 | 4.3:-6291323 | MS.gene048780:CDS |
| TCGTAAAGGAAAGCAAAAGA+GGG | 0.638358 | 4.3:-6291454 | MS.gene048780:CDS |
| TTTCTTAGTCCAAGTTCTCG+GGG | 0.640293 | 4.3:+6291794 | None:intergenic |
| ATGTATATCGGAAGAAAATG+GGG | 0.640455 | 4.3:-6288888 | MS.gene048780:CDS |
| AAGAGGGCAGGAGCTCGCAA+AGG | 0.640963 | 4.3:-6291438 | MS.gene048780:CDS |
| ATTCAGTTAAAACGTTGCTG+AGG | 0.645034 | 4.3:+6288625 | None:intergenic |
| TAAGGATCAAAGCAGTGCCA+AGG | 0.648474 | 4.3:-6291024 | MS.gene048780:CDS |
| CCAGATCCGCAAGTTAGAGG+AGG | 0.652701 | 4.3:-6290685 | MS.gene048780:CDS |
| ATTACAGTTAAATAAGACAC+AGG | 0.657648 | 4.3:-6291225 | MS.gene048780:CDS |
| AATGAGTCTCAAATTTGCAG+AGG | 0.664150 | 4.3:-6288532 | MS.gene048780:CDS |
| TGTTGAAGAAGGAAGCAGAA+CGG | 0.665549 | 4.3:-6290017 | MS.gene048780:CDS |
| GCCTGATGGGAACTTTCCCG+AGG | 0.673014 | 4.3:+6291575 | None:intergenic |
| AAGGATGAAGAGGAGAAAGT+GGG | 0.675953 | 4.3:-6289961 | MS.gene048780:CDS |
| GAACTGGAGAAACAAGCCCA+AGG | 0.679568 | 4.3:-6290663 | MS.gene048780:CDS |
| TCAAACACTAACATGCAAGA+CGG | 0.686206 | 4.3:+6292544 | None:intergenic |
| GGAACTGGAGGACAAAGTGG+AGG | 0.698428 | 4.3:-6289395 | MS.gene048780:CDS |
| TGAGAATGAAAAGCTTACAG+TGG | 0.700759 | 4.3:-6290184 | MS.gene048780:CDS |
| AGTTGGCAGGGATTTCTCTG+AGG | 0.701615 | 4.3:-6290226 | MS.gene048780:CDS |
| TCTGCTCTAACATTGCATCG+AGG | 0.707967 | 4.3:+6291168 | None:intergenic |
| TGTGCAGAAGAGACTACTGG+AGG | 0.721029 | 4.3:-6290421 | MS.gene048780:CDS |
| AAAATGCTAATACTGCAGAG+AGG | 0.734559 | 4.3:-6290545 | MS.gene048780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCAAACATAATTTTAACAAT+GGG | + | chr4.3:6289666-6289685 | None:intergenic | 15.0% |
| !!! | TTATTATTTTGTGATTTCAA+CGG | - | chr4.3:6288878-6288897 | MS.gene048780:CDS | 15.0% |
| !!! | TTCAAACATAATTTTAACAA+TGG | + | chr4.3:6289667-6289686 | None:intergenic | 15.0% |
| !! | AAATTTATTAGTGTCACAAT+TGG | + | chr4.3:6292893-6292912 | None:intergenic | 20.0% |
| !! | ACTAATGTTTGTATAATTTC+AGG | - | chr4.3:6288677-6288696 | MS.gene048780:CDS | 20.0% |
| !! | ATATATATATATGTCTTGCT+TGG | - | chr4.3:6292560-6292579 | MS.gene048780:CDS | 20.0% |
| !! | GTTATTGAATGGTTTATTTA+TGG | - | chr4.3:6292923-6292942 | MS.gene048780:CDS | 20.0% |
| !! | TAAGACAAATTATAAATGAC+AGG | + | chr4.3:6292445-6292464 | None:intergenic | 20.0% |
| !! | TACAAGAAAATAGTGATAAA+AGG | - | chr4.3:6289289-6289308 | MS.gene048780:intron | 20.0% |
| !! | TACAATAATGAATAATTCCT+TGG | + | chr4.3:6289559-6289578 | None:intergenic | 20.0% |
| !! | TTTAGTCTGTTTGTAATTAT+TGG | + | chr4.3:6290537-6290556 | None:intergenic | 20.0% |
| !!! | AATGATGAACAATTTTGAAT+TGG | + | chr4.3:6288621-6288640 | None:intergenic | 20.0% |
| ! | AAATCAACTCAAGAAACAAT+CGG | - | chr4.3:6290904-6290923 | MS.gene048780:CDS | 25.0% |
| ! | AATGTTAGAGCAGAAAAATA+AGG | - | chr4.3:6290496-6290515 | MS.gene048780:CDS | 25.0% |
| ! | AGAGAAAATAAAAATGCTTG+AGG | - | chr4.3:6291948-6291967 | MS.gene048780:intron | 25.0% |
| ! | ATTACAGTTAAATAAGACAC+AGG | - | chr4.3:6290430-6290449 | MS.gene048780:CDS | 25.0% |
| ! | CAAAATCTATATCCAGAAAA+GGG | + | chr4.3:6289345-6289364 | None:intergenic | 25.0% |
| ! | CAATGATACTTCATGTATAT+CGG | - | chr4.3:6292755-6292774 | MS.gene048780:intron | 25.0% |
| ! | CCAAAATTTCAACAATTTGA+AGG | + | chr4.3:6289163-6289182 | None:intergenic | 25.0% |
| ! | CTAGATGAAAATATCTATAG+AGG | + | chr4.3:6292046-6292065 | None:intergenic | 25.0% |
| ! | GCATATTTATTGCAGATATA+TGG | + | chr4.3:6292643-6292662 | None:intergenic | 25.0% |
| ! | TCAAAATCTATATCCAGAAA+AGG | + | chr4.3:6289346-6289365 | None:intergenic | 25.0% |
| ! | TCAATATATGTGTTGAGTAA+AGG | + | chr4.3:6289588-6289607 | None:intergenic | 25.0% |
| ! | TTATCAAAAGCTAGTATCTT+TGG | - | chr4.3:6289002-6289021 | MS.gene048780:intron | 25.0% |
| ! | TTATCAAGCATATTTCTCAA+AGG | + | chr4.3:6292010-6292029 | None:intergenic | 25.0% |
| ! | TTGATTGTGAATTTGTGATA+TGG | - | chr4.3:6288953-6288972 | MS.gene048780:CDS | 25.0% |
| !! | AAATAGTGATAAAAGGTATG+TGG | - | chr4.3:6289296-6289315 | MS.gene048780:intron | 25.0% |
| !! | AATAGTGATAAAAGGTATGT+GGG | - | chr4.3:6289297-6289316 | MS.gene048780:intron | 25.0% |
| !! | ATTCAGTTTTACCTCATAAT+CGG | + | chr4.3:6291302-6291321 | None:intergenic | 25.0% |
| !! | CCTTCAAATTGTTGAAATTT+TGG | - | chr4.3:6289160-6289179 | MS.gene048780:intron | 25.0% |
| !! | GATTCTTTTAAATACTCGAA+AGG | - | chr4.3:6291582-6291601 | MS.gene048780:CDS | 25.0% |
| !! | GGTAAATTTTCAAATCCTTT+TGG | - | chr4.3:6291969-6291988 | MS.gene048780:intron | 25.0% |
| !! | TATTTGTTCTATTTTGCCTA+GGG | - | chr4.3:6288978-6288997 | MS.gene048780:intron | 25.0% |
| !! | TCATGATGGAAATTGTAAAT+GGG | - | chr4.3:6288788-6288807 | MS.gene048780:intron | 25.0% |
| !! | TTATTTGTTCTATTTTGCCT+AGG | - | chr4.3:6288977-6288996 | MS.gene048780:intron | 25.0% |
| !! | TTCATGATGGAAATTGTAAA+TGG | - | chr4.3:6288787-6288806 | MS.gene048780:intron | 25.0% |
| !! | TTTTTCTTTCTAGATTTCAC+AGG | - | chr4.3:6289701-6289720 | MS.gene048780:intron | 25.0% |
| !!! | AAGGTTTTATCATGAATTGT+TGG | - | chr4.3:6292593-6292612 | MS.gene048780:CDS | 25.0% |
| !!! | ACTTAAGTTAGTTCTATCAA+AGG | + | chr4.3:6292099-6292118 | None:intergenic | 25.0% |
| !!! | AGTATTAGCATTTTTAAGTC+TGG | + | chr4.3:6291104-6291123 | None:intergenic | 25.0% |
| !!! | AGTTCTGATTTTTTGCTAAA+TGG | - | chr4.3:6289246-6289265 | MS.gene048780:intron | 25.0% |
| !!! | CTTAAGTTAGTTCTATCAAA+GGG | + | chr4.3:6292098-6292117 | None:intergenic | 25.0% |
| !!! | TCTTTTTGTTGTTGACTTTT+TGG | - | chr4.3:6288908-6288927 | MS.gene048780:CDS | 25.0% |
| !!! | TTTCTTATTTTCAAGTTGCA+TGG | + | chr4.3:6291395-6291414 | None:intergenic | 25.0% |
| AACTTAACAGCTTCATAAAC+AGG | + | chr4.3:6288819-6288838 | None:intergenic | 30.0% | |
| ACTAAAAACTCCCATGATTT+AGG | - | chr4.3:6290551-6290570 | MS.gene048780:CDS | 30.0% | |
| ACTTATGAAGAAATCACTTG+AGG | - | chr4.3:6291552-6291571 | MS.gene048780:CDS | 30.0% | |
| AGAACTTCAATCCAAAATTG+AGG | - | chr4.3:6292239-6292258 | MS.gene048780:intron | 30.0% | |
| AGAATGATGAAGAAATGTGA+AGG | + | chr4.3:6288556-6288575 | None:intergenic | 30.0% | |
| ATATGTGTTCTTAATGCCAT+AGG | + | chr4.3:6292857-6292876 | None:intergenic | 30.0% | |
| ATGTATATCGGAAGAAAATG+GGG | - | chr4.3:6292767-6292786 | MS.gene048780:intron | 30.0% | |
| CATAAAAACAGTTGAGTATG+AGG | + | chr4.3:6289374-6289393 | None:intergenic | 30.0% | |
| CATCAATAAGAGAATGTTTC+AGG | + | chr4.3:6291768-6291787 | None:intergenic | 30.0% | |
| CATGTATATCGGAAGAAAAT+GGG | - | chr4.3:6292766-6292785 | MS.gene048780:intron | 30.0% | |
| CCAAACAAAAACTCAATGAT+AGG | - | chr4.3:6289450-6289469 | MS.gene048780:CDS | 30.0% | |
| CCATCTTATATGCAAATTCA+TGG | + | chr4.3:6290787-6290806 | None:intergenic | 30.0% | |
| CCATGAATTTGCATATAAGA+TGG | - | chr4.3:6290784-6290803 | MS.gene048780:CDS | 30.0% | |
| CTAAAAACTCCCATGATTTA+GGG | - | chr4.3:6290552-6290571 | MS.gene048780:CDS | 30.0% | |
| CTTACTTGAGCAAAAAATCA+CGG | - | chr4.3:6290661-6290680 | MS.gene048780:CDS | 30.0% | |
| GAAAGAAAGAGACAAATCAA+TGG | - | chr4.3:6293063-6293082 | MS.gene048780:intron | 30.0% | |
| GGGATGATTATCTTGATTAT+TGG | - | chr4.3:6289318-6289337 | MS.gene048780:intron | 30.0% | |
| GTTAATTAACATTTGCAGAG+AGG | - | chr4.3:6289409-6289428 | MS.gene048780:CDS | 30.0% | |
| GTTTCAAAGTCATTTATACC+AGG | + | chr4.3:6290866-6290885 | None:intergenic | 30.0% | |
| TACATTTGATGCAAATGAGA+CGG | - | chr4.3:6291174-6291193 | MS.gene048780:CDS | 30.0% | |
| TATATCTCCAGTGCTTAAAT+AGG | + | chr4.3:6289486-6289505 | None:intergenic | 30.0% | |
| TATGTGTTCTTAATGCCATA+GGG | + | chr4.3:6292856-6292875 | None:intergenic | 30.0% | |
| TATTTCTTAGTCCAAGTTCT+CGG | + | chr4.3:6289866-6289885 | None:intergenic | 30.0% | |
| TCACTAAATTTCCCATTCTT+AGG | + | chr4.3:6288852-6288871 | None:intergenic | 30.0% | |
| TCATGTATATCGGAAGAAAA+TGG | - | chr4.3:6292765-6292784 | MS.gene048780:intron | 30.0% | |
| TGAAGCTGTTAAGTTTAATC+AGG | - | chr4.3:6288824-6288843 | MS.gene048780:intron | 30.0% | |
| TGTACAAATTGGTATACCTT+TGG | + | chr4.3:6292309-6292328 | None:intergenic | 30.0% | |
| TGTAGAGAATGAAAAACTCA+AGG | - | chr4.3:6290109-6290128 | MS.gene048780:CDS | 30.0% | |
| TGTGAACTGAAGTTATTGAA+TGG | - | chr4.3:6292912-6292931 | MS.gene048780:CDS | 30.0% | |
| TTAACAATGGGAATAGAAGA+AGG | + | chr4.3:6289654-6289673 | None:intergenic | 30.0% | |
| TTAATCAGGATCCTAAGAAT+GGG | - | chr4.3:6288838-6288857 | MS.gene048780:intron | 30.0% | |
| TTTAATCAGGATCCTAAGAA+TGG | - | chr4.3:6288837-6288856 | MS.gene048780:intron | 30.0% | |
| ! | AGAAATCTTAAGTTCTGACT+TGG | - | chr4.3:6291528-6291547 | MS.gene048780:CDS | 30.0% |
| ! | AGTTTTACTACTACAAGTGA+CGG | - | chr4.3:6292699-6292718 | MS.gene048780:intron | 30.0% |
| ! | ATAGTGATAAAAGGTATGTG+GGG | - | chr4.3:6289298-6289317 | MS.gene048780:intron | 30.0% |
| ! | CCTATCATTGAGTTTTTGTT+TGG | + | chr4.3:6289453-6289472 | None:intergenic | 30.0% |
| ! | TACAATTGCTTTGTTGAAGA+AGG | - | chr4.3:6291627-6291646 | MS.gene048780:CDS | 30.0% |
| ! | TGAAAATAAGAAAAAGCACG+AGG | - | chr4.3:6291402-6291421 | MS.gene048780:CDS | 30.0% |
| !! | AAAGTGATTCTTCTGAAGTA+AGG | - | chr4.3:6289519-6289538 | MS.gene048780:intron | 30.0% |
| !! | ATACCAGTAATGGATAGTAA+TGG | - | chr4.3:6292998-6293017 | MS.gene048780:intron | 30.0% |
| !! | CAAAATGATTTGCTTATGAC+AGG | - | chr4.3:6292152-6292171 | MS.gene048780:CDS | 30.0% |
| !!! | AATGGTTTTAGTCTCAATGT+AGG | + | chr4.3:6291869-6291888 | None:intergenic | 30.0% |
| !!! | ACTTTTTTGGTTAGTTGGAA+TGG | + | chr4.3:6291887-6291906 | None:intergenic | 30.0% |
| !!! | GAAGAATTGAAGCACTTTTT+TGG | + | chr4.3:6291900-6291919 | None:intergenic | 30.0% |
| !!! | GGACTATGAAATTTTGAAAC+AGG | - | chr4.3:6290757-6290776 | MS.gene048780:CDS | 30.0% |
| !!! | TGATTTTTTGCTAAATGGAC+AGG | - | chr4.3:6289251-6289270 | MS.gene048780:intron | 30.0% |
| AAAATCAAAGGAGACTGCTT+TGG | - | chr4.3:6292182-6292201 | MS.gene048780:CDS | 35.0% | |
| AAAATGCTAATACTGCAGAG+AGG | - | chr4.3:6291110-6291129 | MS.gene048780:CDS | 35.0% | |
| AAATAGGATGATGCATCTCA+AGG | - | chr4.3:6291675-6291694 | MS.gene048780:CDS | 35.0% | |
| AACTCAATGATAGGAGCTTA+AGG | - | chr4.3:6289459-6289478 | MS.gene048780:CDS | 35.0% | |
| AATGAGTCTCAAATTTGCAG+AGG | - | chr4.3:6293123-6293142 | MS.gene048780:intron | 35.0% | |
| AATGCCATAGGGAAGAAAAA+AGG | + | chr4.3:6292845-6292864 | None:intergenic | 35.0% | |
| AATTAACATTTGCAGAGAGG+AGG | - | chr4.3:6289412-6289431 | MS.gene048780:CDS | 35.0% | |
| ACAAGAATTGAATCACGAGA+AGG | - | chr4.3:6290388-6290407 | MS.gene048780:CDS | 35.0% | |
| ACAGGACCTGATAAAATCAA+AGG | - | chr4.3:6292170-6292189 | MS.gene048780:CDS | 35.0% | |
| ACATGGAACTTCAAACTCTT+CGG | - | chr4.3:6290171-6290190 | MS.gene048780:CDS | 35.0% | |
| AGAAGCAGAAATACCAGTAA+TGG | - | chr4.3:6292988-6293007 | MS.gene048780:intron | 35.0% | |
| AGACATTTCTCCCTAAATCA+TGG | + | chr4.3:6290565-6290584 | None:intergenic | 35.0% | |
| AGACGATGAACAGAAAGAAT+TGG | - | chr4.3:6290598-6290617 | MS.gene048780:CDS | 35.0% | |
| ATCAGAGATCATCACATTTC+CGG | - | chr4.3:6289988-6290007 | MS.gene048780:CDS | 35.0% | |
| ATCCGAATGAGAATTCTTGA+TGG | + | chr4.3:6289090-6289109 | None:intergenic | 35.0% | |
| ATCGTAAAGGAAAGCAAAAG+AGG | - | chr4.3:6290200-6290219 | MS.gene048780:CDS | 35.0% | |
| ATGCCATAGGGAAGAAAAAA+GGG | + | chr4.3:6292844-6292863 | None:intergenic | 35.0% | |
| ATGGTGAGATAGAGATGTAT+AGG | - | chr4.3:6290690-6290709 | MS.gene048780:CDS | 35.0% | |
| ATTACAATGTCAAGTTCCGA+TGG | - | chr4.3:6289819-6289838 | MS.gene048780:CDS | 35.0% | |
| ATTCAGTTAAAACGTTGCTG+AGG | + | chr4.3:6293033-6293052 | None:intergenic | 35.0% | |
| ATTTCTTAGTCCAAGTTCTC+GGG | + | chr4.3:6289865-6289884 | None:intergenic | 35.0% | |
| CAAAAAATCACGGATCTCTA+TGG | - | chr4.3:6290671-6290690 | MS.gene048780:CDS | 35.0% | |
| CATTGTTATGTGCTTCAAAC+AGG | - | chr4.3:6292662-6292681 | MS.gene048780:intron | 35.0% | |
| CTCATTTGCATCAAATGTAG+TGG | + | chr4.3:6291173-6291192 | None:intergenic | 35.0% | |
| CTTGCTTGGTATCTTGATTA+AGG | - | chr4.3:6292574-6292593 | MS.gene048780:CDS | 35.0% | |
| GAAGTAAGGTTTCACTCATT+GGG | - | chr4.3:6289533-6289552 | MS.gene048780:intron | 35.0% | |
| GACATTTCTCCCTAAATCAT+GGG | + | chr4.3:6290564-6290583 | None:intergenic | 35.0% | |
| GAGAAAGCTATAGTTCATGA+TGG | - | chr4.3:6288774-6288793 | MS.gene048780:intron | 35.0% | |
| GCTTTCTCTAATCTTGTAGT+TGG | + | chr4.3:6288762-6288781 | None:intergenic | 35.0% | |
| GGATGAATTCTCAAATTCTC+TGG | - | chr4.3:6290925-6290944 | MS.gene048780:CDS | 35.0% | |
| GGCTTCAAGAAGAATTCAAA+AGG | - | chr4.3:6291131-6291150 | MS.gene048780:CDS | 35.0% | |
| TAACGATGAACTGAAGAAGA+AGG | - | chr4.3:6291831-6291850 | MS.gene048780:CDS | 35.0% | |
| TAAGTCAGCTTCAAATCCTT+GGG | + | chr4.3:6291011-6291030 | None:intergenic | 35.0% | |
| TATCAGTCATCAATGCACTT+TGG | + | chr4.3:6292395-6292414 | None:intergenic | 35.0% | |
| TCAAACACTAACATGCAAGA+CGG | + | chr4.3:6289114-6289133 | None:intergenic | 35.0% | |
| TCAAAGTCATTTATACCAGG+AGG | + | chr4.3:6290863-6290882 | None:intergenic | 35.0% | |
| TCAATCCAAAATTGAGGAAC+TGG | - | chr4.3:6292245-6292264 | MS.gene048780:intron | 35.0% | |
| TCCCATCAAGAATTCTCATT+CGG | - | chr4.3:6289085-6289104 | MS.gene048780:intron | 35.0% | |
| TCCGAATGAGAATTCTTGAT+GGG | + | chr4.3:6289089-6289108 | None:intergenic | 35.0% | |
| TCGTAAAGGAAAGCAAAAGA+GGG | - | chr4.3:6290201-6290220 | MS.gene048780:CDS | 35.0% | |
| TCTATAGTTCCTGGAGATAA+TGG | - | chr4.3:6288732-6288751 | MS.gene048780:intron | 35.0% | |
| TCTTCAGTTCATCGTTAAGA+TGG | + | chr4.3:6291828-6291847 | None:intergenic | 35.0% | |
| TCTTCGGAAACAAATCGTAA+AGG | - | chr4.3:6290187-6290206 | MS.gene048780:CDS | 35.0% | |
| TGAAACACATATCCAGAATC+TGG | - | chr4.3:6290880-6290899 | MS.gene048780:CDS | 35.0% | |
| TGAAGTAAGGTTTCACTCAT+TGG | - | chr4.3:6289532-6289551 | MS.gene048780:intron | 35.0% | |
| TGAGAATGAAAAGCTTACAG+TGG | - | chr4.3:6291471-6291490 | MS.gene048780:CDS | 35.0% | |
| TTAAGGACCTATTTAAGCAC+TGG | - | chr4.3:6289476-6289495 | MS.gene048780:CDS | 35.0% | |
| TTCGTTTGCGAAAAGATTTG+AGG | + | chr4.3:6290295-6290314 | None:intergenic | 35.0% | |
| TTGCCATTACTATCCATTAC+TGG | + | chr4.3:6293004-6293023 | None:intergenic | 35.0% | |
| ! | AAGTGTTGCGATGTACAAAT+TGG | + | chr4.3:6292320-6292339 | None:intergenic | 35.0% |
| ! | CAAATCTTTTCGCAAACGAA+GGG | - | chr4.3:6290295-6290314 | MS.gene048780:CDS | 35.0% |
| ! | TATGGATCATTTTCTGTCCA+TGG | - | chr4.3:6292941-6292960 | MS.gene048780:CDS | 35.0% |
| ! | TCAAATCTTTTCGCAAACGA+AGG | - | chr4.3:6290294-6290313 | MS.gene048780:CDS | 35.0% |
| ! | TCTCAGATCTGTCATTTCTT+TGG | + | chr4.3:6291929-6291948 | None:intergenic | 35.0% |
| ! | TTGATTATTGGACCCTTTTC+TGG | - | chr4.3:6289330-6289349 | MS.gene048780:intron | 35.0% |
| !! | AGAATTGGATGAGCTTGTTA+AGG | - | chr4.3:6290613-6290632 | MS.gene048780:CDS | 35.0% |
| !! | CAGTCTCCTTTGATTTTATC+AGG | + | chr4.3:6292179-6292198 | None:intergenic | 35.0% |
| !! | GTAATGGATAGTAATGGCAA+TGG | - | chr4.3:6293004-6293023 | MS.gene048780:intron | 35.0% |
| !! | TTAAGCACTGGAGATATAGA+TGG | - | chr4.3:6289488-6289507 | MS.gene048780:intron | 35.0% |
| !!! | ACTAGCTTTTGATAATCCCT+AGG | + | chr4.3:6288997-6289016 | None:intergenic | 35.0% |
| !!! | GAAGCACTTTTTTGGTTAGT+TGG | + | chr4.3:6291892-6291911 | None:intergenic | 35.0% |
| !!! | GACAACTTTTGCTCTAAGAA+AGG | + | chr4.3:6289621-6289640 | None:intergenic | 35.0% |
| !!! | TCAAATCCTTTTGGTTTGAG+CGG | - | chr4.3:6291978-6291997 | MS.gene048780:intron | 35.0% |
| !!! | TGAGTTGATTTTCCAGATTC+TGG | + | chr4.3:6290895-6290914 | None:intergenic | 35.0% |
| !!! | TGTCATGGCATCTTTTTTGT+TGG | + | chr4.3:6291332-6291351 | None:intergenic | 35.0% |
| AAGGATGAAGAGGAGAAAGT+GGG | - | chr4.3:6291694-6291713 | MS.gene048780:CDS | 40.0% | |
| AAGTCATTTATACCAGGAGG+AGG | + | chr4.3:6290860-6290879 | None:intergenic | 40.0% | |
| AGAGCTTCAAAATCTTGCTG+TGG | - | chr4.3:6289938-6289957 | MS.gene048780:CDS | 40.0% | |
| AGATGAGTTAGAGATGCAGA+TGG | - | chr4.3:6290721-6290740 | MS.gene048780:CDS | 40.0% | |
| AGTAGCAGATCACAATTGGA+AGG | - | chr4.3:6290332-6290351 | MS.gene048780:CDS | 40.0% | |
| AGTATGGACGGTTCAATACA+TGG | - | chr4.3:6290041-6290060 | MS.gene048780:CDS | 40.0% | |
| AGTGAGTAGCAGATCACAAT+TGG | - | chr4.3:6290328-6290347 | MS.gene048780:CDS | 40.0% | |
| ATCAGTCAAAGCCGATTATG+AGG | - | chr4.3:6291288-6291307 | MS.gene048780:CDS | 40.0% | |
| ATCCAAAATTGAGGAACTGG+AGG | - | chr4.3:6292248-6292267 | MS.gene048780:intron | 40.0% | |
| CAAAAGGCTATCAATGCAGA+TGG | - | chr4.3:6291147-6291166 | MS.gene048780:CDS | 40.0% | |
| CACATCTCTTGTGTTTGCAT+TGG | + | chr4.3:6289736-6289755 | None:intergenic | 40.0% | |
| CTAAGTCAGCTTCAAATCCT+TGG | + | chr4.3:6291012-6291031 | None:intergenic | 40.0% | |
| CTCAAATTTGCAGAGGTAGA+AGG | - | chr4.3:6293130-6293149 | MS.gene048780:intron | 40.0% | |
| GACACATGACAAAGTTAAGC+AGG | - | chr4.3:6291039-6291058 | MS.gene048780:CDS | 40.0% | |
| GGAAGTTATCAGCTTGAAAG+AGG | - | chr4.3:6290238-6290257 | MS.gene048780:CDS | 40.0% | |
| GGCTTCTTCATATTTGGAGA+AGG | - | chr4.3:6292212-6292231 | MS.gene048780:CDS | 40.0% | |
| GGTCACTTGATGAGCTAAAT+AGG | - | chr4.3:6291659-6291678 | MS.gene048780:CDS | 40.0% | |
| TAAGAAGCCTCAAGAATGCT+AGG | - | chr4.3:6293179-6293198 | MS.gene048780:CDS | 40.0% | |
| TCAGAGATCATCACATTTCC+GGG | - | chr4.3:6289989-6290008 | MS.gene048780:CDS | 40.0% | |
| TCAGATGCAACAGATGTTGT+TGG | - | chr4.3:6291354-6291373 | MS.gene048780:CDS | 40.0% | |
| TGTTGAAGAAGGAAGCAGAA+CGG | - | chr4.3:6291638-6291657 | MS.gene048780:CDS | 40.0% | |
| TTCAGAACTTGGTCTGAGTA+TGG | - | chr4.3:6290025-6290044 | MS.gene048780:CDS | 40.0% | |
| TTGGTACTCTCTATAGTTCC+TGG | - | chr4.3:6288723-6288742 | MS.gene048780:intron | 40.0% | |
| TTTCTTAGTCCAAGTTCTCG+GGG | + | chr4.3:6289864-6289883 | None:intergenic | 40.0% | |
| ! | AAAAAGCACGAGGAACAAGT+TGG | - | chr4.3:6291412-6291431 | MS.gene048780:CDS | 40.0% |
| ! | CTTCAAAATCTTGCTGTGGA+TGG | - | chr4.3:6289942-6289961 | MS.gene048780:CDS | 40.0% |
| ! | GAATTGGTCTCGAGATAAGT+TGG | + | chr4.3:6288605-6288624 | None:intergenic | 40.0% |
| ! | GGTATTTCTGCTTCTTTCTC+TGG | + | chr4.3:6292983-6293002 | None:intergenic | 40.0% |
| ! | TAATTTCAGGTGCTGCAATC+TGG | - | chr4.3:6288690-6288709 | MS.gene048780:CDS | 40.0% |
| !! | AAGGAGCACCATTTGTTGTA+GGG | + | chr4.3:6289899-6289918 | None:intergenic | 40.0% |
| !! | AGCATCGGCTTCTTCATATT+TGG | - | chr4.3:6292206-6292225 | MS.gene048780:CDS | 40.0% |
| !! | TGAACTAGTTCTTGCTGTTC+AGG | - | chr4.3:6290463-6290482 | MS.gene048780:CDS | 40.0% |
| !!! | GATTTTGAAGCTCTGAAGAG+TGG | + | chr4.3:6289932-6289951 | None:intergenic | 40.0% |
| !!! | GTTGGTTTTCCATTATCTCC+AGG | + | chr4.3:6288744-6288763 | None:intergenic | 40.0% |
| AAAGGAAAGCAAAAGAGGGC+AGG | - | chr4.3:6290205-6290224 | MS.gene048780:CDS | 45.0% | |
| AAGCCTCAAGAATGCTAGGA+AGG | - | chr4.3:6293183-6293202 | MS.gene048780:CDS | 45.0% | |
| ACCTATCCGCTCAAACCAAA+AGG | + | chr4.3:6291987-6292006 | None:intergenic | 45.0% | |
| AGCAGATCACAATTGGAAGG+TGG | - | chr4.3:6290335-6290354 | MS.gene048780:CDS | 45.0% | |
| AGCATCCACCCTACAACAAA+TGG | - | chr4.3:6289888-6289907 | MS.gene048780:CDS | 45.0% | |
| AGCCTCAAGAATGCTAGGAA+GGG | - | chr4.3:6293184-6293203 | MS.gene048780:CDS | 45.0% | |
| ATCAAGTCCAGAGCTTCCAT+CGG | + | chr4.3:6289838-6289857 | None:intergenic | 45.0% | |
| ATCGGAAGAAAATGGGGTTG+TGG | - | chr4.3:6292773-6292792 | MS.gene048780:intron | 45.0% | |
| ATCTCACTCTCACTCAGGTA+CGG | - | chr4.3:6288525-6288544 | MS.gene048780:CDS | 45.0% | |
| CAAGGATGAAGAGGAGAAAG+TGG | - | chr4.3:6291693-6291712 | MS.gene048780:CDS | 45.0% | |
| CAGATCACAATTGGAAGGTG+GGG | - | chr4.3:6290337-6290356 | MS.gene048780:CDS | 45.0% | |
| CAGTCATCAATGCACTTTGG+TGG | + | chr4.3:6292392-6292411 | None:intergenic | 45.0% | |
| CTCAAGTAAGTGTGTCTCCT+TGG | + | chr4.3:6290651-6290670 | None:intergenic | 45.0% | |
| CTGTTGCATCTGAACTGTCA+TGG | + | chr4.3:6291347-6291366 | None:intergenic | 45.0% | |
| GAACTTGGTCTGAGTATGGA+CGG | - | chr4.3:6290029-6290048 | MS.gene048780:CDS | 45.0% | |
| GAGATCTGACAGTTGAGTGA+TGG | - | chr4.3:6292121-6292140 | MS.gene048780:intron | 45.0% | |
| GATGCATCTCAAGGATGAAG+AGG | - | chr4.3:6291684-6291703 | MS.gene048780:CDS | 45.0% | |
| GCAATCTGGTGTGGATTCTT+TGG | - | chr4.3:6288704-6288723 | MS.gene048780:intron | 45.0% | |
| GCAGATCACAATTGGAAGGT+GGG | - | chr4.3:6290336-6290355 | MS.gene048780:CDS | 45.0% | |
| GCTGATTGTAGGACATCTAG+TGG | - | chr4.3:6289789-6289808 | MS.gene048780:CDS | 45.0% | |
| GTGCTTCAAACAGGTTGTTG+CGG | - | chr4.3:6292671-6292690 | MS.gene048780:intron | 45.0% | |
| GTGTCATCAGTCAAGAGGTT+TGG | - | chr4.3:6292795-6292814 | MS.gene048780:CDS | 45.0% | |
| TAACATTTGCAGAGAGGAGG+AGG | - | chr4.3:6289415-6289434 | MS.gene048780:CDS | 45.0% | |
| TAAGGATCAAAGCAGTGCCA+AGG | - | chr4.3:6290631-6290650 | MS.gene048780:CDS | 45.0% | |
| TCCAGCTCTTGTGTTTGCAT+TGG | + | chr4.3:6289763-6289782 | None:intergenic | 45.0% | |
| TCTGCTCTAACATTGCATCG+AGG | + | chr4.3:6290490-6290509 | None:intergenic | 45.0% | |
| TTTCCATCTCACTCTCACTC+AGG | - | chr4.3:6288520-6288539 | MS.gene048780:CDS | 45.0% | |
| ! | GTCCTCCAGTTCCTCAATTT+TGG | + | chr4.3:6292253-6292272 | None:intergenic | 45.0% |
| ! | TTTTCGCAAACGAAGGGATG+AGG | - | chr4.3:6290301-6290320 | MS.gene048780:CDS | 45.0% |
| !! | CTGGATTGAGTGCTGATTGT+AGG | - | chr4.3:6289778-6289797 | MS.gene048780:CDS | 45.0% |
| !! | GAAGGAGCACCATTTGTTGT+AGG | + | chr4.3:6289900-6289919 | None:intergenic | 45.0% |
| !! | TCAGAGCATTGCTTTGCCAA+AGG | - | chr4.3:6292290-6292309 | MS.gene048780:intron | 45.0% |
| !! | TTGTGGTGTCATCAGTCAAG+AGG | - | chr4.3:6292790-6292809 | MS.gene048780:CDS | 45.0% |
| !!! | ACGCCCTTTTTTCTTCCCTA+TGG | - | chr4.3:6292838-6292857 | MS.gene048780:CDS | 45.0% |
| !!! | TCCTTTTGGTTTGAGCGGAT+AGG | - | chr4.3:6291983-6292002 | MS.gene048780:intron | 45.0% |
| AGCCCTTCCTAGCATTCTTG+AGG | + | chr4.3:6293189-6293208 | None:intergenic | 50.0% | |
| AGGTTTCACTCATTGGGCCA+AGG | - | chr4.3:6289539-6289558 | MS.gene048780:intron | 50.0% | |
| AGTTGGCAGGGATTTCTCTG+AGG | - | chr4.3:6291429-6291448 | MS.gene048780:CDS | 50.0% | |
| ATGCAAATGAGACGGCTACC+AGG | - | chr4.3:6291182-6291201 | MS.gene048780:CDS | 50.0% | |
| ATGGGAACTTTCCCGAGGAA+GGG | + | chr4.3:6290078-6290097 | None:intergenic | 50.0% | |
| CAAAGCTTCCTCAGCTCGAA+TGG | + | chr4.3:6291074-6291093 | None:intergenic | 50.0% | |
| CCAGTTCCTCCTCTAACTTG+CGG | + | chr4.3:6290979-6290998 | None:intergenic | 50.0% | |
| CTTGATACTCCCCGAGAACT+TGG | - | chr4.3:6289852-6289871 | MS.gene048780:CDS | 50.0% | |
| GAACCAGATCCGCAAGTTAG+AGG | - | chr4.3:6290967-6290986 | MS.gene048780:CDS | 50.0% | |
| GAACTGGAGAAACAAGCCCA+AGG | - | chr4.3:6290992-6291011 | MS.gene048780:CDS | 50.0% | |
| GCAAATGTGCATGACTGCCA+TGG | + | chr4.3:6292961-6292980 | None:intergenic | 50.0% | |
| GCCAATGCAAACACAAGAGC+TGG | - | chr4.3:6289759-6289778 | MS.gene048780:CDS | 50.0% | |
| GTACCTGAGTGAGAGTGAGA+TGG | + | chr4.3:6288526-6288545 | None:intergenic | 50.0% | |
| TCAAGTTCCGATGGAAGCTC+TGG | - | chr4.3:6289828-6289847 | MS.gene048780:CDS | 50.0% | |
| TCGTGTGCAGAAGAGACTAC+TGG | - | chr4.3:6291231-6291250 | MS.gene048780:CDS | 50.0% | |
| TGAGGAACTGGAGGACAAAG+TGG | - | chr4.3:6292257-6292276 | MS.gene048780:intron | 50.0% | |
| TGTGCAGAAGAGACTACTGG+AGG | - | chr4.3:6291234-6291253 | MS.gene048780:CDS | 50.0% | |
| ! | CAAGGCTGAAGTTGCTGCTT+TGG | - | chr4.3:6290127-6290146 | MS.gene048780:CDS | 50.0% |
| ! | CTGGTTCTCAAGAGACTCGA+TGG | + | chr4.3:6290954-6290973 | None:intergenic | 50.0% |
| ! | TGCTCAGCTGGTTCAGAACT+TGG | - | chr4.3:6290014-6290033 | MS.gene048780:CDS | 50.0% |
| !! | GAGCACCATTTGTTGTAGGG+TGG | + | chr4.3:6289896-6289915 | None:intergenic | 50.0% |
| !! | GGAGACTGCTTTGGAAGCAT+CGG | - | chr4.3:6292191-6292210 | MS.gene048780:CDS | 50.0% |
| !! | TTGAAGCTCTGAAGAGTGGC+TGG | + | chr4.3:6289928-6289947 | None:intergenic | 50.0% |
| CCAGATCCGCAAGTTAGAGG+AGG | - | chr4.3:6290970-6290989 | MS.gene048780:CDS | 55.0% | |
| CCGCAAGTTAGAGGAGGAAC+TGG | - | chr4.3:6290976-6290995 | MS.gene048780:CDS | 55.0% | |
| CTCTACATCCGCTGCCTGAT+GGG | + | chr4.3:6290096-6290115 | None:intergenic | 55.0% | |
| CTCTCAAGATGCCCTTCCTC+GGG | - | chr4.3:6290064-6290083 | MS.gene048780:CDS | 55.0% | |
| GAAGAGTGGCTGGTGACTGA+AGG | + | chr4.3:6289918-6289937 | None:intergenic | 55.0% | |
| GAATGCTCTTCTCCTCCTCC+TGG | - | chr4.3:6290845-6290864 | MS.gene048780:CDS | 55.0% | |
| GATGGGAACTTTCCCGAGGA+AGG | + | chr4.3:6290079-6290098 | None:intergenic | 55.0% | |
| GCAAAGAGCCATTCGAGCTG+AGG | - | chr4.3:6291063-6291082 | MS.gene048780:CDS | 55.0% | |
| GCAGGTGGATGTGTCAGACA+TGG | - | chr4.3:6290154-6290173 | MS.gene048780:CDS | 55.0% | |
| GCTCTCAAGATGCCCTTCCT+CGG | - | chr4.3:6290063-6290082 | MS.gene048780:CDS | 55.0% | |
| GGAAAGTTCCCATCAGGCAG+CGG | - | chr4.3:6290085-6290104 | MS.gene048780:CDS | 55.0% | |
| GGAACTGGAGGACAAAGTGG+AGG | - | chr4.3:6292260-6292279 | MS.gene048780:intron | 55.0% | |
| TCCTCGGGAAAGTTCCCATC+AGG | - | chr4.3:6290079-6290098 | MS.gene048780:CDS | 55.0% | |
| TCTCTACATCCGCTGCCTGA+TGG | + | chr4.3:6290097-6290116 | None:intergenic | 55.0% | |
| ! | AGCACGAGGAACAAGTTGGC+AGG | - | chr4.3:6291416-6291435 | MS.gene048780:CDS | 55.0% |
| ! | CCTCCTCTAACTTGCGGATC+TGG | + | chr4.3:6290973-6290992 | None:intergenic | 55.0% |
| ! | GCACGAGGAACAAGTTGGCA+GGG | - | chr4.3:6291417-6291436 | MS.gene048780:CDS | 55.0% |
| ! | TCAGGTGCTGCAATCTGGTG+TGG | - | chr4.3:6288695-6288714 | MS.gene048780:intron | 55.0% |
| !! | CTGAAGTTGCTGCTTTGGCC+AGG | - | chr4.3:6290132-6290151 | MS.gene048780:CDS | 55.0% |
| AAGAGGGCAGGAGCTCGCAA+AGG | - | chr4.3:6290217-6290236 | MS.gene048780:CDS | 60.0% | |
| CATTTCCGGGACTGCTCAGC+TGG | - | chr4.3:6290002-6290021 | MS.gene048780:CDS | 60.0% | |
| CTGAACCAGCTGAGCAGTCC+CGG | + | chr4.3:6290010-6290029 | None:intergenic | 60.0% | |
| GCAGATGGAGCAGCTTGCAC+TGG | - | chr4.3:6290736-6290755 | MS.gene048780:CDS | 60.0% | |
| GCCTGATGGGAACTTTCCCG+AGG | + | chr4.3:6290083-6290102 | None:intergenic | 60.0% | |
| GTCTGACACATCCACCTGCC+TGG | + | chr4.3:6290153-6290172 | None:intergenic | 60.0% | |
| TGCTTCTGTCAGCGCTCTCC+TGG | + | chr4.3:6291203-6291222 | None:intergenic | 60.0% | |
| !! | AGTTGCTGCTTTGGCCAGGC+AGG | - | chr4.3:6290136-6290155 | MS.gene048780:CDS | 60.0% |
| !! | TGCTGCTTTGGCCAGGCAGG+TGG | - | chr4.3:6290139-6290158 | MS.gene048780:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 6288467 | 6293210 | 6288467 | ID=MS.gene048780 |
| chr4.3 | mRNA | 6288467 | 6293210 | 6288467 | ID=MS.gene048780.t1;Parent=MS.gene048780 |
| chr4.3 | exon | 6293136 | 6293210 | 6293136 | ID=MS.gene048780.t1.exon1;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6293136 | 6293210 | 6293136 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| chr4.3 | exon | 6292778 | 6292978 | 6292778 | ID=MS.gene048780.t1.exon2;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6292778 | 6292978 | 6292778 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| chr4.3 | exon | 6292556 | 6292678 | 6292556 | ID=MS.gene048780.t1.exon3;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6292556 | 6292678 | 6292556 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| chr4.3 | exon | 6292367 | 6292404 | 6292367 | ID=MS.gene048780.t1.exon4;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6292367 | 6292404 | 6292367 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| chr4.3 | exon | 6292142 | 6292250 | 6292142 | ID=MS.gene048780.t1.exon5;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6292142 | 6292250 | 6292142 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| chr4.3 | exon | 6289708 | 6291963 | 6289708 | ID=MS.gene048780.t1.exon6;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6289708 | 6291963 | 6289708 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| chr4.3 | exon | 6289366 | 6289503 | 6289366 | ID=MS.gene048780.t1.exon7;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6289366 | 6289503 | 6289366 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| chr4.3 | exon | 6288866 | 6288993 | 6288866 | ID=MS.gene048780.t1.exon8;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6288866 | 6288993 | 6288866 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| chr4.3 | exon | 6288467 | 6288710 | 6288467 | ID=MS.gene048780.t1.exon9;Parent=MS.gene048780.t1 |
| chr4.3 | CDS | 6288467 | 6288710 | 6288467 | ID=cds.MS.gene048780.t1;Parent=MS.gene048780.t1 |
| Gene Sequence |
| Protein sequence |
