Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019289.t1 | XP_003611115.1 | 92 | 1062 | 85 | 0 | 1 | 1062 | 1 | 1062 | 0.00E+00 | 1549.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019289.t1 | G7KDD8 | 92.0 | 1062 | 85 | 0 | 1 | 1062 | 1 | 1062 | 0.0e+00 | 1549.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene019289 | MS.gene036437 | PPI |
MS.gene019289 | MS.gene058289 | PPI |
MS.gene019289 | MS.gene006300 | PPI |
MS.gene019289 | MS.gene34485 | PPI |
MS.gene019289 | MS.gene91501 | PPI |
MS.gene019289 | MS.gene43975 | PPI |
MS.gene019289 | MS.gene033776 | PPI |
MS.gene019289 | MS.gene073110 | PPI |
MS.gene019289 | MS.gene005105 | PPI |
MS.gene019289 | MS.gene94379 | PPI |
MS.gene019289 | MS.gene00106 | PPI |
MS.gene019289 | MS.gene49082 | PPI |
MS.gene019289 | MS.gene41427 | PPI |
MS.gene019289 | MS.gene48616 | PPI |
MS.gene019289 | MS.gene35346 | PPI |
MS.gene019289 | MS.gene67841 | PPI |
MS.gene019289 | MS.gene94636 | PPI |
MS.gene93915 | MS.gene019289 | PPI |
MS.gene019289 | MS.gene93913 | PPI |
MS.gene019289 | MS.gene55940 | PPI |
MS.gene019289 | MS.gene93911 | PPI |
MS.gene019289 | MS.gene043158 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019289.t1 | MTR_5g010520 | 95.198 | 1062 | 51 | 0 | 1 | 1062 | 1 | 1062 | 0.0 | 1996 |
MS.gene019289.t1 | MTR_5g010520 | 94.979 | 936 | 47 | 0 | 1 | 936 | 1 | 936 | 0.0 | 1756 |
MS.gene019289.t1 | MTR_8g097350 | 63.324 | 1077 | 335 | 9 | 1 | 1062 | 1 | 1032 | 0.0 | 1267 |
MS.gene019289.t1 | MTR_8g097350 | 64.379 | 991 | 316 | 8 | 1 | 976 | 1 | 969 | 0.0 | 1198 |
MS.gene019289.t1 | MTR_0415s0020 | 67.485 | 326 | 106 | 0 | 539 | 864 | 16 | 341 | 1.12e-137 | 419 |
MS.gene019289.t1 | MTR_1g100633 | 36.842 | 779 | 417 | 16 | 1 | 769 | 1 | 714 | 5.61e-136 | 430 |
MS.gene019289.t1 | MTR_1g100633 | 36.842 | 779 | 417 | 16 | 1 | 769 | 1 | 714 | 1.21e-135 | 429 |
MS.gene019289.t1 | MTR_1g100633 | 36.842 | 779 | 417 | 16 | 1 | 769 | 1 | 714 | 2.87e-135 | 430 |
MS.gene019289.t1 | MTR_1g100633 | 69.091 | 55 | 17 | 0 | 1007 | 1061 | 798 | 852 | 2.47e-14 | 78.2 |
MS.gene019289.t1 | MTR_0415s0010 | 59.794 | 291 | 107 | 2 | 183 | 463 | 1 | 291 | 5.58e-96 | 306 |
MS.gene019289.t1 | MTR_3g073620 | 26.135 | 727 | 431 | 20 | 1 | 670 | 1 | 678 | 2.37e-46 | 182 |
MS.gene019289.t1 | MTR_1g062200 | 25.478 | 471 | 272 | 14 | 1 | 432 | 1 | 431 | 3.33e-25 | 114 |
MS.gene019289.t1 | MTR_1g062200 | 25.370 | 473 | 274 | 14 | 1 | 434 | 1 | 433 | 4.00e-25 | 113 |
MS.gene019289.t1 | MTR_1g062200 | 25.688 | 545 | 312 | 18 | 566 | 1058 | 776 | 1279 | 8.87e-11 | 67.0 |
MS.gene019289.t1 | MTR_1g090807 | 22.961 | 466 | 310 | 14 | 1 | 436 | 25 | 471 | 2.60e-17 | 88.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene019289.t1 | AT1G63300 | 47.393 | 1074 | 508 | 16 | 1 | 1062 | 1 | 1029 | 0.0 | 840 |
MS.gene019289.t1 | AT5G41140 | 45.260 | 1076 | 480 | 18 | 1 | 1061 | 1 | 982 | 0.0 | 790 |
MS.gene019289.t1 | AT5G41140 | 45.158 | 1074 | 477 | 17 | 1 | 1061 | 1 | 975 | 0.0 | 785 |
MS.gene019289.t1 | AT5G52280 | 36.058 | 893 | 447 | 17 | 1 | 886 | 1 | 776 | 2.14e-137 | 436 |
MS.gene019289.t1 | AT5G52280 | 61.194 | 67 | 24 | 1 | 995 | 1061 | 788 | 852 | 5.30e-14 | 77.4 |
MS.gene019289.t1 | AT1G22060 | 26.630 | 721 | 423 | 21 | 1 | 671 | 1 | 665 | 1.91e-44 | 176 |
MS.gene019289.t1 | AT1G22060 | 26.630 | 721 | 423 | 21 | 1 | 671 | 1 | 665 | 1.91e-44 | 176 |
Find 194 sgRNAs with CRISPR-Local
Find 273 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAGTTTCCTTTGACTTTATC+AGG | 0.217694 | 5.4:+4802811 | None:intergenic |
CCTCCTCTAATCCTCTGATA+TGG | 0.239596 | 5.4:+4804017 | None:intergenic |
CTGTATCGCCGTTGCTGAAT+TGG | 0.249416 | 5.4:+4805509 | None:intergenic |
CTCAGAGCTCGGGTTAAGTA+TGG | 0.260393 | 5.4:-4804968 | MS.gene019289:CDS |
CTCAAGCAAGTGTGTCTCTT+TGG | 0.267898 | 5.4:+4804339 | None:intergenic |
CCAGCATTGAGAAGAGATTC+AGG | 0.288948 | 5.4:-4803121 | MS.gene019289:CDS |
ATGGGTTTCTAGTACCTTAA+TGG | 0.298162 | 5.4:+4804036 | None:intergenic |
TCTTTATTTCACTCTTTAGC+TGG | 0.301119 | 5.4:+4803162 | None:intergenic |
CTCCTCTAATCCTCTGATAT+GGG | 0.314641 | 5.4:+4804018 | None:intergenic |
CAAAGCTGAACTTGCTGCTT+TGG | 0.315649 | 5.4:-4804866 | MS.gene019289:CDS |
GTTGATACTCCCTGCGAAAT+TGG | 0.316541 | 5.4:-4805135 | MS.gene019289:CDS |
TAGTTGACTGAAGCTCTTCT+TGG | 0.317857 | 5.4:+4803714 | None:intergenic |
CAGAGGATTAGAGGAGGAAA+TGG | 0.321191 | 5.4:-4804011 | MS.gene019289:CDS |
GGAACTCCAGAGCAGAATTA+TGG | 0.323324 | 5.4:-4802748 | MS.gene019289:CDS |
CGTTCTGTTGTTTATTGCTT+TGG | 0.325606 | 5.4:+4805206 | None:intergenic |
TGTATCGCGTTCGTGTCTAT+TGG | 0.326142 | 5.4:+4804459 | None:intergenic |
AGCTTGGGGAACAAGTTAAT+AGG | 0.327660 | 5.4:-4803571 | MS.gene019289:CDS |
AGATGTTTCGTTCTTCAAAA+TGG | 0.329139 | 5.4:-4806814 | MS.gene019289:CDS |
GCAAGAATCAAATGCTGAAT+TGG | 0.334048 | 5.4:-4804545 | MS.gene019289:CDS |
CTCCAATGGGGATGCCTCTT+GGG | 0.337850 | 5.4:+4804900 | None:intergenic |
TGCCTCTTGGGAACTTTCCT+TGG | 0.342709 | 5.4:+4804912 | None:intergenic |
GCTTTCTCTAATCTCTTTGT+TGG | 0.351234 | 5.4:+4806211 | None:intergenic |
TTCGCAATGCTTCCTCGGCT+TGG | 0.354438 | 5.4:+4803912 | None:intergenic |
CTCAAATTTGCCGAGGTAGA+AGG | 0.360392 | 5.4:-4802299 | MS.gene019289:CDS |
TGAAACTCACATTGAGAATC+TGG | 0.362265 | 5.4:-4804107 | MS.gene019289:CDS |
CGAAACAGTCAAGTATTATC+AGG | 0.373302 | 5.4:-4806146 | MS.gene019289:CDS |
TCTGCGGCACGAGCCATAAC+TGG | 0.374717 | 5.4:+4805069 | None:intergenic |
AATGGAGGAGTGAGAAGAAT+AGG | 0.381314 | 5.4:-4806796 | MS.gene019289:CDS |
AAACCAGTTTGTTCCAGTTA+TGG | 0.383737 | 5.4:-4805082 | MS.gene019289:CDS |
TCGAAAATCAGAAGAAGCTT+GGG | 0.384283 | 5.4:-4803586 | MS.gene019289:CDS |
GCTTGGGGAACAAGTTAATA+GGG | 0.389725 | 5.4:-4803570 | MS.gene019289:CDS |
TACTTGACTGTTTCGTATAC+CGG | 0.390138 | 5.4:+4806154 | None:intergenic |
GAGAAAACTCTCAGCCCTTA+TGG | 0.392278 | 5.4:+4802231 | None:intergenic |
CAATGCTTCCTCGGCTTGGA+TGG | 0.396921 | 5.4:+4803916 | None:intergenic |
GAGGCATTAACAGCAGCATT+TGG | 0.397470 | 5.4:+4805042 | None:intergenic |
TCATTTGCATTGAGAGTCTC+TGG | 0.397576 | 5.4:+4803840 | None:intergenic |
AACCCATATCAGAGGATTAG+AGG | 0.401973 | 5.4:-4804020 | MS.gene019289:CDS |
AGAGTTTCATCTCTAACTCT+TGG | 0.402659 | 5.4:+4804431 | None:intergenic |
TCTCCAATGGGGATGCCTCT+TGG | 0.408869 | 5.4:+4804899 | None:intergenic |
AAATTCTCTAGCTACCATTA+AGG | 0.413944 | 5.4:-4804050 | MS.gene019289:CDS |
TTGTCTGATTTCTTCGACAA+AGG | 0.415014 | 5.4:+4804624 | None:intergenic |
TCCTCAGCATTCAAAAGAAA+TGG | 0.416016 | 5.4:-4803027 | MS.gene019289:CDS |
TTCCTTCAATGACGACAATT+CGG | 0.418972 | 5.4:+4802382 | None:intergenic |
AGACAGAATGTGACAATATC+AGG | 0.419878 | 5.4:-4804717 | MS.gene019289:CDS |
GACCGAATTGTCGTCATTGA+AGG | 0.423001 | 5.4:-4802384 | MS.gene019289:CDS |
ATATCAGAAGAAGTAAGAAA+TGG | 0.423590 | 5.4:-4802443 | MS.gene019289:CDS |
CTGTGACCTGTTTCTCACTT+TGG | 0.434319 | 5.4:+4804669 | None:intergenic |
ATATTTCAGGTGTTACAATC+AGG | 0.434804 | 5.4:-4806280 | MS.gene019289:intron |
TATTATCAGGATCCGAAGAC+TGG | 0.443472 | 5.4:-4806133 | MS.gene019289:CDS |
TTGGGAACTTTCCTTGGAAA+GGG | 0.444214 | 5.4:+4804918 | None:intergenic |
AGACTATGAGATATTAAAAC+AGG | 0.445367 | 5.4:-4804230 | MS.gene019289:CDS |
CTCATGTCTCTCTTCCCATC+AGG | 0.446018 | 5.4:-4805907 | MS.gene019289:CDS |
CTCGAAAATCAGAAGAAGCT+TGG | 0.447142 | 5.4:-4803587 | MS.gene019289:CDS |
TAGACGCAGTTCACTTGCTT+CGG | 0.447539 | 5.4:+4803772 | None:intergenic |
TCTGCTCCAACATTTCTTCG+AGG | 0.449328 | 5.4:+4804506 | None:intergenic |
CTTGGGAACTTTCCTTGGAA+AGG | 0.451320 | 5.4:+4804917 | None:intergenic |
AAATTGTCGGTGGGAGAATC+CGG | 0.455464 | 5.4:-4806173 | MS.gene019289:CDS |
GAGGAGATGAACACTCATAT+TGG | 0.455757 | 5.4:+4804149 | None:intergenic |
ACGATGCCAAAGTGAGAAAC+AGG | 0.457175 | 5.4:-4804675 | MS.gene019289:CDS |
TGTTTAACTGTTCCTGCAGT+TGG | 0.458017 | 5.4:+4804173 | None:intergenic |
GACACTCTTGAGGTTTCTTA+CGG | 0.459347 | 5.4:+4802253 | None:intergenic |
CCAGCTCCATAATTCTGCTC+TGG | 0.462993 | 5.4:+4802742 | None:intergenic |
ACAAAGTGGAGGAATTTAAT+CGG | 0.463277 | 5.4:-4802716 | MS.gene019289:CDS |
TGAGTCTCTCAATCTCCAAT+GGG | 0.465745 | 5.4:+4804887 | None:intergenic |
AAACCTCAAGAGTGTCCATA+AGG | 0.465783 | 5.4:-4802246 | MS.gene019289:CDS |
CCTTTACAATTTGCTTCCTG+AGG | 0.465895 | 5.4:+4804806 | None:intergenic |
GGTCTTTCGCAATGCTTCCT+CGG | 0.468804 | 5.4:+4803907 | None:intergenic |
AGAAGAAGTAAGAAATGGAT+TGG | 0.469512 | 5.4:-4802438 | MS.gene019289:CDS |
TATCAAAAGCTAGCGCAGTC+GGG | 0.470515 | 5.4:-4805976 | MS.gene019289:CDS |
CTTTATTTCACTCTTTAGCT+GGG | 0.470948 | 5.4:+4803163 | None:intergenic |
CTCTTAAATGAACAAGTAGA+AGG | 0.471330 | 5.4:-4803485 | MS.gene019289:CDS |
AGAGACATGAGAGGGCTTTG+TGG | 0.474075 | 5.4:+4805919 | None:intergenic |
TGGCATCGTCCATGCGTTTG+TGG | 0.475881 | 5.4:+4804689 | None:intergenic |
CTAGCTTATGTACAAGCTTG+TGG | 0.476951 | 5.4:+4804203 | None:intergenic |
GCTTCAATTCAATGCTACTA+AGG | 0.477435 | 5.4:-4806756 | MS.gene019289:intron |
GAGTTTCATCTCTAACTCTT+GGG | 0.477504 | 5.4:+4804432 | None:intergenic |
CACGCGGACAATAGTCTTAG+TGG | 0.488677 | 5.4:-4802413 | MS.gene019289:CDS |
GAGCCATAACTGGAACAAAC+TGG | 0.492152 | 5.4:+4805079 | None:intergenic |
TTGTCTTTCACCTTCTACCT+CGG | 0.494056 | 5.4:+4802289 | None:intergenic |
TCAAGTTCTGATGACAGCTC+TGG | 0.494881 | 5.4:-4805159 | MS.gene019289:CDS |
TGAATTGGTTCTTGCCGTGC+AGG | 0.496687 | 5.4:-4804530 | MS.gene019289:CDS |
CCTGAATCTCTTCTCAATGC+TGG | 0.497104 | 5.4:+4803121 | None:intergenic |
CACAATTGCGTCATTGAAGA+AGG | 0.500768 | 5.4:-4803360 | MS.gene019289:CDS |
TCAATGTCATTCATAGCAGC+AGG | 0.501038 | 5.4:+4804127 | None:intergenic |
AACAACTTCATCTATGAAGA+AGG | 0.501525 | 5.4:-4802775 | MS.gene019289:CDS |
AGCCCTTATGGACACTCTTG+AGG | 0.501555 | 5.4:+4802243 | None:intergenic |
AAGAGTGAAATAAAGAAGAA+AGG | 0.501656 | 5.4:-4803155 | MS.gene019289:CDS |
AGTATGGGTGATTCAACAAA+CGG | 0.501745 | 5.4:-4804952 | MS.gene019289:CDS |
CTTTACAATTTGCTTCCTGA+GGG | 0.502149 | 5.4:+4804807 | None:intergenic |
CATTATCTTGAAAGATGAAA+GGG | 0.502436 | 5.4:-4804749 | MS.gene019289:CDS |
TGCTGCTTTGGCGAGGCACA+TGG | 0.503620 | 5.4:-4804854 | MS.gene019289:CDS |
TTCATCTATGAAGAAGGAAA+AGG | 0.506959 | 5.4:-4802769 | MS.gene019289:CDS |
TTGGTGTTGTCAATAGTTCC+TGG | 0.507047 | 5.4:-4806247 | MS.gene019289:CDS |
TCAATAGTTCCTGGTGACAT+TGG | 0.514235 | 5.4:-4806238 | MS.gene019289:CDS |
TTTACATCAGAAATCACAAT+GGG | 0.515966 | 5.4:-4805004 | MS.gene019289:CDS |
TTGAGTCTCTCAATCTCCAA+TGG | 0.520575 | 5.4:+4804886 | None:intergenic |
GAAGGAAAGAAACAAATCAA+TGG | 0.521587 | 5.4:-4802366 | MS.gene019289:CDS |
AAAGTCAAAGGAAACTGCAT+TGG | 0.521988 | 5.4:-4802805 | MS.gene019289:CDS |
TTATCAAAAGCTAGCGCAGT+CGG | 0.526715 | 5.4:-4805977 | MS.gene019289:CDS |
TCACATTGAGAATCTGGAAA+AGG | 0.528730 | 5.4:-4804101 | MS.gene019289:CDS |
TTCTCAAAATGCCCTTTCCA+AGG | 0.530388 | 5.4:-4804929 | MS.gene019289:CDS |
CGTCATCTAGCTCAGAGCTC+GGG | 0.531611 | 5.4:-4804978 | MS.gene019289:CDS |
ATTGTAAAGGAAAGCAAAAG+AGG | 0.532163 | 5.4:-4804793 | MS.gene019289:CDS |
CCTCAGGAAGCAAATTGTAA+AGG | 0.534111 | 5.4:-4804806 | MS.gene019289:CDS |
TACCTTTGATGAAAATGAGA+AGG | 0.534206 | 5.4:-4803813 | MS.gene019289:CDS |
TTCCCAAGAGGCATCCCCAT+TGG | 0.536163 | 5.4:-4804902 | MS.gene019289:CDS |
ATAAACAACAGAACGTCTAG+TGG | 0.536249 | 5.4:-4805198 | MS.gene019289:CDS |
TGCTTCGGTCAATGCTCTCA+TGG | 0.536262 | 5.4:+4803787 | None:intergenic |
TATTTCAGGTGTTACAATCA+GGG | 0.542788 | 5.4:-4806279 | MS.gene019289:intron |
AGAAATCTTAAGAACTGACT+TGG | 0.543909 | 5.4:-4803459 | MS.gene019289:CDS |
CGGTTCAAGATGGAAATTGT+CGG | 0.544548 | 5.4:-4806186 | MS.gene019289:CDS |
TCTGAAACATTGTTACATCA+AGG | 0.545037 | 5.4:-4803410 | MS.gene019289:CDS |
TCGTCATCTAGCTCAGAGCT+CGG | 0.545721 | 5.4:-4804979 | MS.gene019289:CDS |
TTGTATCTATTTGATTGCAA+AGG | 0.545922 | 5.4:+4803663 | None:intergenic |
GCAGGACCTCGAAGAAATGT+TGG | 0.547824 | 5.4:-4804512 | MS.gene019289:CDS |
GGACGCAACCAACTTTCTGA+TGG | 0.547926 | 5.4:-4803089 | MS.gene019289:CDS |
ATGGTGAAATTGAAATGTAC+AGG | 0.549704 | 5.4:-4804297 | MS.gene019289:CDS |
TAGACTATTGAAGTCAGAGT+TGG | 0.550029 | 5.4:-4803270 | MS.gene019289:CDS |
GAGAAAGCTACGGTTCAAGA+TGG | 0.550233 | 5.4:-4806196 | MS.gene019289:CDS |
CAGCATTGAGAAGAGATTCA+GGG | 0.550761 | 5.4:-4803120 | MS.gene019289:CDS |
AACTGGAACAAACTGGTTTG+TGG | 0.550964 | 5.4:+4805086 | None:intergenic |
CCAGAGCAGAATTATGGAGC+TGG | 0.551430 | 5.4:-4802742 | MS.gene019289:CDS |
TCAGATACAGCAGATGTTGG+TGG | 0.553151 | 5.4:-4803633 | MS.gene019289:CDS |
GTTGGTCTTCCAATGTCACC+AGG | 0.557975 | 5.4:+4806229 | None:intergenic |
GGAACAAACTGGTTTGTGGT+GGG | 0.559149 | 5.4:+4805090 | None:intergenic |
GGCGAGGCACATGGATGTGT+CGG | 0.560632 | 5.4:-4804845 | MS.gene019289:CDS |
AACCTCAAGAGTGTCCATAA+GGG | 0.560828 | 5.4:-4802245 | MS.gene019289:CDS |
CTGAACTTGCTGCTTTGGCG+AGG | 0.561486 | 5.4:-4804861 | MS.gene019289:CDS |
ACAATCAGGGGTGGATGCAT+TGG | 0.564604 | 5.4:-4806266 | MS.gene019289:CDS |
GCACATGGATGTGTCGGACA+TGG | 0.564836 | 5.4:-4804839 | MS.gene019289:CDS |
TCATTATCTTGAAAGATGAA+AGG | 0.568558 | 5.4:-4804750 | MS.gene019289:CDS |
ACTTATGAAGAAATCAATTG+AGG | 0.571259 | 5.4:-4803435 | MS.gene019289:CDS |
ACATGGAACTACAGACCCTC+AGG | 0.571689 | 5.4:-4804822 | MS.gene019289:CDS |
GCTAGAGCAAAGCCAACTGC+AGG | 0.575549 | 5.4:-4804185 | MS.gene019289:CDS |
TGAAGCTGATATAGAAGCAA+TGG | 0.579079 | 5.4:-4803969 | MS.gene019289:CDS |
AGTGAGAAACAGGTCACAGT+TGG | 0.580096 | 5.4:-4804665 | MS.gene019289:CDS |
TCAGAGCTCGGGTTAAGTAT+GGG | 0.581632 | 5.4:-4804967 | MS.gene019289:CDS |
TGCGTCATTGAAGAAGGAAG+CGG | 0.583079 | 5.4:-4803354 | MS.gene019289:CDS |
CTTCCCATCAGGAATTCTCA+TGG | 0.584077 | 5.4:-4805896 | MS.gene019289:CDS |
GAATCTGGAAAAGGAACTCA+AGG | 0.586220 | 5.4:-4804092 | MS.gene019289:CDS |
AAAGGAAAGCAAAAGAGGGC+AGG | 0.588422 | 5.4:-4804788 | MS.gene019289:CDS |
TAAATCATGCATCGGTGTCG+AGG | 0.589755 | 5.4:+4805023 | None:intergenic |
ATTTCAGGTGTTACAATCAG+GGG | 0.591987 | 5.4:-4806278 | MS.gene019289:intron |
AATTCGATGATAAGAGCTCA+AGG | 0.592445 | 5.4:-4805534 | MS.gene019289:CDS |
GTGAAATTGAAATGTACAGG+AGG | 0.592477 | 5.4:-4804294 | MS.gene019289:CDS |
AGTTCAGATACAGCAGATGT+TGG | 0.594949 | 5.4:-4803636 | MS.gene019289:CDS |
ATCAAAAGCTAGCGCAGTCG+GGG | 0.595936 | 5.4:-4805975 | MS.gene019289:CDS |
TCGGAATGTTACTTTACATG+AGG | 0.598259 | 5.4:-4802697 | MS.gene019289:intron |
TACAGCTGAAAGGCTTCAAG+AGG | 0.600122 | 5.4:-4803867 | MS.gene019289:CDS |
TTCAAGATGGAAATTGTCGG+TGG | 0.600830 | 5.4:-4806183 | MS.gene019289:CDS |
GGAACTCAAGGAGCAGTCAG+AGG | 0.602241 | 5.4:-4804080 | MS.gene019289:CDS |
AGCATTGGATGATCTTGTCA+AGG | 0.603938 | 5.4:-4804374 | MS.gene019289:CDS |
TGTTTCGTTCTTCAAAATGG+AGG | 0.604012 | 5.4:-4806811 | MS.gene019289:CDS |
GAACAAACTGGTTTGTGGTG+GGG | 0.604811 | 5.4:+4805091 | None:intergenic |
TTTCTCAGTCCAATTTCGCA+GGG | 0.605119 | 5.4:+4805126 | None:intergenic |
AAGTAAAATGAGATATCTCA+AGG | 0.605138 | 5.4:-4803312 | MS.gene019289:CDS |
CATTTCTTCGAGGTCCTGCA+CGG | 0.609463 | 5.4:+4804516 | None:intergenic |
AGCAGCATTTGGAGATTCTG+CGG | 0.610316 | 5.4:+4805053 | None:intergenic |
TGGAACAAACTGGTTTGTGG+TGG | 0.614538 | 5.4:+4805089 | None:intergenic |
AAGAGGGCAGGATCTCATGA+AGG | 0.615741 | 5.4:-4804776 | MS.gene019289:CDS |
CAGGTCTTTCCACAAACGCA+TGG | 0.619359 | 5.4:-4804698 | MS.gene019289:CDS |
GCAGGGCCTGATAAAGTCAA+AGG | 0.619605 | 5.4:-4802817 | MS.gene019289:intron |
TCAGGTGTTACAATCAGGGG+TGG | 0.620277 | 5.4:-4806275 | MS.gene019289:intron |
TTGTAAAGGAAAGCAAAAGA+GGG | 0.620965 | 5.4:-4804792 | MS.gene019289:CDS |
TTCTGATGTAAATCATGCAT+CGG | 0.622397 | 5.4:+4805015 | None:intergenic |
AAAATGCTAATACAGCTGAA+AGG | 0.622552 | 5.4:-4803877 | MS.gene019289:CDS |
AACAGGTCACAGTTGGAAAG+CGG | 0.623497 | 5.4:-4804658 | MS.gene019289:CDS |
GCAAAGAGCCATCCAAGCCG+AGG | 0.624482 | 5.4:-4803924 | MS.gene019289:CDS |
AAGAGATTCAGGGATAGTAA+CGG | 0.632337 | 5.4:-4803110 | MS.gene019289:CDS |
ATGGGAAGAGAGACATGAGA+GGG | 0.634288 | 5.4:+4805911 | None:intergenic |
TCAAGATGGAAATTGTCGGT+GGG | 0.636130 | 5.4:-4806182 | MS.gene019289:CDS |
ATCACCATGAGAATTCCTGA+TGG | 0.636391 | 5.4:+4805892 | None:intergenic |
TCACCATGAGAATTCCTGAT+GGG | 0.636505 | 5.4:+4805893 | None:intergenic |
AAAGAGATTAGAGAAAGCTA+CGG | 0.643270 | 5.4:-4806206 | MS.gene019289:CDS |
TATGGAGCTGGAGAACAAAG+TGG | 0.649823 | 5.4:-4802730 | MS.gene019289:CDS |
GTCAACTAAAGCCGATTACG+AGG | 0.650363 | 5.4:-4803699 | MS.gene019289:CDS |
TCAAGGAACCAATTCAGCAA+CGG | 0.650410 | 5.4:-4805517 | MS.gene019289:CDS |
ATTGTTACATCAAGGAACTG+TGG | 0.651765 | 5.4:-4803402 | MS.gene019289:CDS |
CGAAAATCAGAAGAAGCTTG+GGG | 0.658269 | 5.4:-4803585 | MS.gene019289:CDS |
AATGTACAGGAGGGACAAAG+AGG | 0.660590 | 5.4:-4804284 | MS.gene019289:CDS |
GTACTAGAAACCCATATCAG+AGG | 0.661720 | 5.4:-4804028 | MS.gene019289:CDS |
TAAACAACAGAACGTCTAGT+GGG | 0.662018 | 5.4:-4805197 | MS.gene019289:CDS |
TTCCAAGGAAAGTTCCCAAG+AGG | 0.662303 | 5.4:-4804914 | MS.gene019289:CDS |
TGAAATTGAAATGTACAGGA+GGG | 0.663489 | 5.4:-4804293 | MS.gene019289:CDS |
AATGAGTCTCAAATTTGCCG+AGG | 0.664150 | 5.4:-4802306 | MS.gene019289:CDS |
ATTTACATCAGAAATCACAA+TGG | 0.664555 | 5.4:-4805005 | MS.gene019289:CDS |
GATGGGAAGAGAGACATGAG+AGG | 0.665257 | 5.4:+4805910 | None:intergenic |
CCATATCAGAGGATTAGAGG+AGG | 0.680781 | 5.4:-4804017 | MS.gene019289:CDS |
ATGTCATTCATAGCAGCAGG+AGG | 0.682334 | 5.4:+4804130 | None:intergenic |
AGTTAATAGGGATTTCTCTG+AGG | 0.682694 | 5.4:-4803558 | MS.gene019289:CDS |
GGAGCTGGAGAACAAAGTGG+AGG | 0.699117 | 5.4:-4802727 | MS.gene019289:CDS |
GAGTCTCTCAATCTCCAATG+GGG | 0.705362 | 5.4:+4804888 | None:intergenic |
AGAACTTGACAATGTAACGT+CGG | 0.708038 | 5.4:+4805173 | None:intergenic |
AAGAAATGGATTGGAACACG+CGG | 0.739070 | 5.4:-4802429 | MS.gene019289:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAAAAATTATTATTAATAA+AGG | + | chr5.4:4802556-4802575 | None:intergenic | 0.0% |
!! | AAAAAAATGATCAAATTCAA+AGG | - | chr5.4:4803349-4803368 | MS.gene019289:CDS | 15.0% |
!! | AAAAAAATTATAGACTTGTA+TGG | - | chr5.4:4804737-4804756 | MS.gene019289:CDS | 15.0% |
!! | CCTTTATATTAACATAAAAA+GGG | + | chr5.4:4806206-4806225 | None:intergenic | 15.0% |
!! | TCCTTTATATTAACATAAAA+AGG | + | chr5.4:4806207-4806226 | None:intergenic | 15.0% |
!! | TTAATATAAAGGATTGTTTA+TGG | - | chr5.4:4806214-4806233 | MS.gene019289:CDS | 15.0% |
!! | TTATATTATAACTGAAATCT+AGG | + | chr5.4:4802580-4802599 | None:intergenic | 15.0% |
!!! | TGATTTTTTGATTAATAAAC+AGG | - | chr5.4:4803305-4803324 | MS.gene019289:CDS | 15.0% |
!! | GAATGAATAATCTAATGTAT+TGG | - | chr5.4:4802438-4802457 | MS.gene019289:CDS | 20.0% |
!! | TTTGTTTGTATATATTCAAC+TGG | - | chr5.4:4803683-4803702 | MS.gene019289:CDS | 20.0% |
!!! | AAGCAATTTTTTTGTTGATT+GGG | + | chr5.4:4806002-4806021 | None:intergenic | 20.0% |
!!! | ATATAATTTTTTGCTCTCAA+CGG | - | chr5.4:4802961-4802980 | MS.gene019289:intron | 20.0% |
!!! | CATTATTATTTTTCCATTTC+TGG | - | chr5.4:4803390-4803409 | MS.gene019289:CDS | 20.0% |
!!! | CCCTTTTTATGTTAATATAA+AGG | - | chr5.4:4806203-4806222 | MS.gene019289:CDS | 20.0% |
!!! | CTATCATATTTCAATTTTCT+GGG | - | chr5.4:4802625-4802644 | MS.gene019289:intron | 20.0% |
!!! | GTCACTGTTATAAAATTTTT+GGG | - | chr5.4:4803039-4803058 | MS.gene019289:CDS | 20.0% |
!!! | TATCATATTTTGATTCTCAA+TGG | - | chr5.4:4802685-4802704 | MS.gene019289:intron | 20.0% |
!!! | TGTCACTGTTATAAAATTTT+TGG | - | chr5.4:4803038-4803057 | MS.gene019289:CDS | 20.0% |
!!! | TTTTAATATCTCATAGTCTA+GGG | + | chr5.4:4804822-4804841 | None:intergenic | 20.0% |
! | AAAATTCTTGTGACTTCTTA+CGG | - | chr5.4:4803621-4803640 | MS.gene019289:CDS | 25.0% |
! | AACATAAAAAGGGAAAATGA+AGG | + | chr5.4:4806196-4806215 | None:intergenic | 25.0% |
! | AAGAGTGAAATAAAGAAGAA+AGG | - | chr5.4:4805898-4805917 | MS.gene019289:CDS | 25.0% |
! | AAGTAAAATGAGATATCTCA+AGG | - | chr5.4:4805741-4805760 | MS.gene019289:intron | 25.0% |
! | ACTTATGAAGAAATCAATTG+AGG | - | chr5.4:4805618-4805637 | MS.gene019289:intron | 25.0% |
! | AGACTATGAGATATTAAAAC+AGG | - | chr5.4:4804823-4804842 | MS.gene019289:CDS | 25.0% |
! | AGAGAAAATAAAAATGCTTG+AGG | - | chr5.4:4806059-4806078 | MS.gene019289:intron | 25.0% |
! | ATATCAGAAGAAGTAAGAAA+TGG | - | chr5.4:4806610-4806629 | MS.gene019289:intron | 25.0% |
! | ATTTACATCAGAAATCACAA+TGG | - | chr5.4:4804048-4804067 | MS.gene019289:CDS | 25.0% |
! | CATTATCTTGAAAGATGAAA+GGG | - | chr5.4:4804304-4804323 | MS.gene019289:CDS | 25.0% |
! | CCAGAAAATTGAAATATGAT+AGG | + | chr5.4:4802627-4802646 | None:intergenic | 25.0% |
! | TCATTATCTTGAAAGATGAA+AGG | - | chr5.4:4804303-4804322 | MS.gene019289:CDS | 25.0% |
! | TTGTATCTATTTGATTGCAA+AGG | + | chr5.4:4805393-4805412 | None:intergenic | 25.0% |
! | TTTACATCAGAAATCACAAT+GGG | - | chr5.4:4804049-4804068 | MS.gene019289:CDS | 25.0% |
!! | CCTATCATATTTCAATTTTC+TGG | - | chr5.4:4802624-4802643 | MS.gene019289:intron | 25.0% |
!!! | AAACATTTGTTGTTGAAATG+TGG | - | chr5.4:4806486-4806505 | MS.gene019289:intron | 25.0% |
!!! | AAATTCAAAGGTACTACAAA+GGG | - | chr5.4:4803361-4803380 | MS.gene019289:CDS | 25.0% |
!!! | AAATTTTTGGGTTTATATGC+AGG | - | chr5.4:4803051-4803070 | MS.gene019289:CDS | 25.0% |
!!! | AATTTTCTGGGAAATGAAAA+TGG | - | chr5.4:4802637-4802656 | MS.gene019289:intron | 25.0% |
!!! | AATTTTTGGGTTTATATGCA+GGG | - | chr5.4:4803052-4803071 | MS.gene019289:CDS | 25.0% |
!!! | AATTTTTTTGTTGATTGGGA+TGG | + | chr5.4:4805998-4806017 | None:intergenic | 25.0% |
!!! | CTTCACATGTTTTTTACTTT+CGG | + | chr5.4:4803779-4803798 | None:intergenic | 25.0% |
!!! | GAAGCAATTTTTTTGTTGAT+TGG | + | chr5.4:4806003-4806022 | None:intergenic | 25.0% |
!!! | GCATCTTTTTTAACTGTAAT+CGG | + | chr5.4:4804490-4804509 | None:intergenic | 25.0% |
!!! | GTTTTAATATCTCATAGTCT+AGG | + | chr5.4:4804823-4804842 | None:intergenic | 25.0% |
!!! | TTTCAAAAAGTCACTTTTTG+AGG | - | chr5.4:4805831-4805850 | MS.gene019289:intron | 25.0% |
AAAATGCTAATACAGCTGAA+AGG | - | chr5.4:4805176-4805195 | MS.gene019289:CDS | 30.0% | |
AAAGAGATTAGAGAAAGCTA+CGG | - | chr5.4:4802847-4802866 | MS.gene019289:intron | 30.0% | |
AAATTCTCTAGCTACCATTA+AGG | - | chr5.4:4805003-4805022 | MS.gene019289:CDS | 30.0% | |
AACAACTTCATCTATGAAGA+AGG | - | chr5.4:4806278-4806297 | MS.gene019289:intron | 30.0% | |
AATTTCAAGCAACTTCACAT+CGG | + | chr5.4:4803220-4803239 | None:intergenic | 30.0% | |
ACAAAGTGGAGGAATTTAAT+CGG | - | chr5.4:4806337-4806356 | MS.gene019289:intron | 30.0% | |
AGAAATCTTAAGAACTGACT+TGG | - | chr5.4:4805594-4805613 | MS.gene019289:intron | 30.0% | |
AGAAGAAGTAAGAAATGGAT+TGG | - | chr5.4:4806615-4806634 | MS.gene019289:intron | 30.0% | |
ATGAGATGAGAAATTGTGTT+TGG | - | chr5.4:4802743-4802762 | MS.gene019289:CDS | 30.0% | |
ATGGTGAAATTGAAATGTAC+AGG | - | chr5.4:4804756-4804775 | MS.gene019289:CDS | 30.0% | |
ATTGTAAAGGAAAGCAAAAG+AGG | - | chr5.4:4804260-4804279 | MS.gene019289:CDS | 30.0% | |
CAAGACTAAGTTTGTAATTC+AGG | + | chr5.4:4806445-4806464 | None:intergenic | 30.0% | |
CAATCTTGTATAACCAGAAA+TGG | + | chr5.4:4803406-4803425 | None:intergenic | 30.0% | |
CATCAATGATATGAAGACAT+AGG | - | chr5.4:4806094-4806113 | MS.gene019289:CDS | 30.0% | |
CTCTTAAATGAACAAGTAGA+AGG | - | chr5.4:4805568-4805587 | MS.gene019289:CDS | 30.0% | |
GAAATGGAAAAACAAGTACA+TGG | - | chr5.4:4805058-4805077 | MS.gene019289:CDS | 30.0% | |
GAAGGAAAGAAACAAATCAA+TGG | - | chr5.4:4806687-4806706 | MS.gene019289:intron | 30.0% | |
GATTCTCAATGGTATTAGAT+TGG | - | chr5.4:4802696-4802715 | MS.gene019289:intron | 30.0% | |
TACCTTTGATGAAAATGAGA+AGG | - | chr5.4:4805240-4805259 | MS.gene019289:intron | 30.0% | |
TGAAATTGAAATGTACAGGA+GGG | - | chr5.4:4804760-4804779 | MS.gene019289:CDS | 30.0% | |
TGAAGTTGCTTGAAATTTCA+GGG | - | chr5.4:4803223-4803242 | MS.gene019289:CDS | 30.0% | |
TTCATCTATGAAGAAGGAAA+AGG | - | chr5.4:4806284-4806303 | MS.gene019289:intron | 30.0% | |
TTCTGATGTAAATCATGCAT+CGG | + | chr5.4:4804041-4804060 | None:intergenic | 30.0% | |
TTGTAAAGGAAAGCAAAAGA+GGG | - | chr5.4:4804261-4804280 | MS.gene019289:CDS | 30.0% | |
TTTCAATAACATTTGCAGAG+AGG | - | chr5.4:4803469-4803488 | MS.gene019289:CDS | 30.0% | |
! | ATATTTCAGGTGTTACAATC+AGG | - | chr5.4:4802773-4802792 | MS.gene019289:CDS | 30.0% |
! | CTTTATTTCACTCTTTAGCT+GGG | + | chr5.4:4805893-4805912 | None:intergenic | 30.0% |
! | TATTTCAGGTGTTACAATCA+GGG | - | chr5.4:4802774-4802793 | MS.gene019289:CDS | 30.0% |
! | TCTGAAACATTGTTACATCA+AGG | - | chr5.4:4805643-4805662 | MS.gene019289:intron | 30.0% |
! | TCTTTATTTCACTCTTTAGC+TGG | + | chr5.4:4805894-4805913 | None:intergenic | 30.0% |
! | TGATGAAGATCAAAAAGCAT+TGG | - | chr5.4:4804664-4804683 | MS.gene019289:CDS | 30.0% |
! | TTTTAGATCCATCAGAAAGT+TGG | + | chr5.4:4805975-4805994 | None:intergenic | 30.0% |
!! | ATTACAAACTTAGTCTTGCT+TGG | - | chr5.4:4806447-4806466 | MS.gene019289:intron | 30.0% |
!! | CAAATTCAAAGGTACTACAA+AGG | - | chr5.4:4803360-4803379 | MS.gene019289:CDS | 30.0% |
!! | CATTTCTGGTTATACAAGAT+TGG | - | chr5.4:4803404-4803423 | MS.gene019289:CDS | 30.0% |
!! | CTTCACTCAAAATTTTGAGT+AGG | + | chr5.4:4803252-4803271 | None:intergenic | 30.0% |
!! | GTTTGGTGATGTAATATTTC+AGG | - | chr5.4:4802760-4802779 | MS.gene019289:CDS | 30.0% |
!! | TCTAATGTATTGGTTCTGTT+AGG | - | chr5.4:4802448-4802467 | MS.gene019289:CDS | 30.0% |
!! | TGTATTAGCATTTTTCAGTC+TGG | + | chr5.4:4805170-4805189 | None:intergenic | 30.0% |
!!! | ATTTTTGGGTTTATATGCAG+GGG | - | chr5.4:4803053-4803072 | MS.gene019289:CDS | 30.0% |
!!! | CATTTTTTTCTTGCATTCTC+TGG | + | chr5.4:4803338-4803357 | None:intergenic | 30.0% |
!!! | CTTGAGAGTTTTTTATGATG+TGG | - | chr5.4:4803437-4803456 | MS.gene019289:CDS | 30.0% |
AAAGTCAAAGGAAACTGCAT+TGG | - | chr5.4:4806248-4806267 | MS.gene019289:CDS | 35.0% | |
AAGAGATTCAGGGATAGTAA+CGG | - | chr5.4:4805943-4805962 | MS.gene019289:CDS | 35.0% | |
AATTCGATGATAAGAGCTCA+AGG | - | chr5.4:4803519-4803538 | MS.gene019289:CDS | 35.0% | |
AGAACTTGACAATGTAACGT+CGG | + | chr5.4:4803883-4803902 | None:intergenic | 35.0% | |
AGACAGAATGTGACAATATC+AGG | - | chr5.4:4804336-4804355 | MS.gene019289:CDS | 35.0% | |
AGAGTTTCATCTCTAACTCT+TGG | + | chr5.4:4804625-4804644 | None:intergenic | 35.0% | |
AGTAAGCATTTCACTCATTC+AGG | - | chr5.4:4803595-4803614 | MS.gene019289:CDS | 35.0% | |
AGTATGGGTGATTCAACAAA+CGG | - | chr5.4:4804101-4804120 | MS.gene019289:CDS | 35.0% | |
AGTTAATAGGGATTTCTCTG+AGG | - | chr5.4:4805495-4805514 | MS.gene019289:CDS | 35.0% | |
ATAAACAACAGAACGTCTAG+TGG | - | chr5.4:4803855-4803874 | MS.gene019289:CDS | 35.0% | |
ATCCTGAACAACCAATTTGA+AGG | + | chr5.4:4806566-4806585 | None:intergenic | 35.0% | |
ATTGTTACATCAAGGAACTG+TGG | - | chr5.4:4805651-4805670 | MS.gene019289:intron | 35.0% | |
CAAGGAAGAAAAAGAAGAAG+AGG | - | chr5.4:4805759-4805778 | MS.gene019289:intron | 35.0% | |
CAATTCAATGCTACTAAGGT+AGG | - | chr5.4:4802301-4802320 | MS.gene019289:CDS | 35.0% | |
CATTAACATGCCCTTCAAAT+TGG | - | chr5.4:4806552-4806571 | MS.gene019289:intron | 35.0% | |
CGAAACAGTCAAGTATTATC+AGG | - | chr5.4:4802907-4802926 | MS.gene019289:intron | 35.0% | |
CTACAGAAAAATCTAGTGGA+AGG | - | chr5.4:4805301-4805320 | MS.gene019289:intron | 35.0% | |
GAGTTTCATCTCTAACTCTT+GGG | + | chr5.4:4804624-4804643 | None:intergenic | 35.0% | |
GCAAGAATCAAATGCTGAAT+TGG | - | chr5.4:4804508-4804527 | MS.gene019289:CDS | 35.0% | |
GCTTCAATTCAATGCTACTA+AGG | - | chr5.4:4802297-4802316 | MS.gene019289:CDS | 35.0% | |
GCTTTCTCTAATCTCTTTGT+TGG | + | chr5.4:4802845-4802864 | None:intergenic | 35.0% | |
GTGAAATTGAAATGTACAGG+AGG | - | chr5.4:4804759-4804778 | MS.gene019289:CDS | 35.0% | |
GTGAAGTTGCTTGAAATTTC+AGG | - | chr5.4:4803222-4803241 | MS.gene019289:CDS | 35.0% | |
TAAACAACAGAACGTCTAGT+GGG | - | chr5.4:4803856-4803875 | MS.gene019289:CDS | 35.0% | |
TACAAGAGAAAACAGCATTC+AGG | + | chr5.4:4806148-4806167 | None:intergenic | 35.0% | |
TACTTGACTGTTTCGTATAC+CGG | + | chr5.4:4802902-4802921 | None:intergenic | 35.0% | |
TAGACTATTGAAGTCAGAGT+TGG | - | chr5.4:4805783-4805802 | MS.gene019289:intron | 35.0% | |
TCACATTGAGAATCTGGAAA+AGG | - | chr5.4:4804952-4804971 | MS.gene019289:CDS | 35.0% | |
TCCTCAGCATTCAAAAGAAA+TGG | - | chr5.4:4806026-4806045 | MS.gene019289:intron | 35.0% | |
TCCTGAACAACCAATTTGAA+GGG | + | chr5.4:4806565-4806584 | None:intergenic | 35.0% | |
TCGAAAATCAGAAGAAGCTT+GGG | - | chr5.4:4805467-4805486 | MS.gene019289:intron | 35.0% | |
TGAAACTCACATTGAGAATC+TGG | - | chr5.4:4804946-4804965 | MS.gene019289:CDS | 35.0% | |
TGAAGCTGATATAGAAGCAA+TGG | - | chr5.4:4805084-4805103 | MS.gene019289:CDS | 35.0% | |
TGTTTCGTTCTTCAAAATGG+AGG | - | chr5.4:4802242-4802261 | MS.gene019289:CDS | 35.0% | |
TTCCTTCAATGACGACAATT+CGG | + | chr5.4:4806674-4806693 | None:intergenic | 35.0% | |
TTGTCTGATTTCTTCGACAA+AGG | + | chr5.4:4804432-4804451 | None:intergenic | 35.0% | |
! | AAACCAGTTTGTTCCAGTTA+TGG | - | chr5.4:4803971-4803990 | MS.gene019289:CDS | 35.0% |
! | AGCCTTCTCATTTTCATCAA+AGG | + | chr5.4:4805245-4805264 | None:intergenic | 35.0% |
! | AGTTTGTAATTCAGGTTTCG+TGG | + | chr5.4:4806437-4806456 | None:intergenic | 35.0% |
! | ATTTCAGGTGTTACAATCAG+GGG | - | chr5.4:4802775-4802794 | MS.gene019289:CDS | 35.0% |
! | CAGTTTCCTTTGACTTTATC+AGG | + | chr5.4:4806245-4806264 | None:intergenic | 35.0% |
! | CGTTCTGTTGTTTATTGCTT+TGG | + | chr5.4:4803850-4803869 | None:intergenic | 35.0% |
! | CTTTACAATTTGCTTCCTGA+GGG | + | chr5.4:4804249-4804268 | None:intergenic | 35.0% |
! | GTTCAGTTTTACCTCGTAAT+CGG | + | chr5.4:4805368-4805387 | None:intergenic | 35.0% |
!! | AAAGGTACTACAAAGGGAAT+TGG | - | chr5.4:4803367-4803386 | MS.gene019289:CDS | 35.0% |
!! | ATGGGTTTCTAGTACCTTAA+TGG | + | chr5.4:4805020-4805039 | None:intergenic | 35.0% |
!! | TCGGAATGTTACTTTACATG+AGG | - | chr5.4:4806356-4806375 | MS.gene019289:intron | 35.0% |
!!! | AAAGTCACTTTTTGAGGATG+AGG | - | chr5.4:4805837-4805856 | MS.gene019289:intron | 35.0% |
!!! | TCGTTGATTTTTCCAGTCTT+CGG | + | chr5.4:4802935-4802954 | None:intergenic | 35.0% |
AACCCATATCAGAGGATTAG+AGG | - | chr5.4:4805033-4805052 | MS.gene019289:CDS | 40.0% | |
AATGAGTCTCAAATTTGCCG+AGG | - | chr5.4:4806747-4806766 | MS.gene019289:intron | 40.0% | |
AATGGAGGAGTGAGAAGAAT+AGG | - | chr5.4:4802257-4802276 | MS.gene019289:CDS | 40.0% | |
AGCTTGGGGAACAAGTTAAT+AGG | - | chr5.4:4805482-4805501 | MS.gene019289:CDS | 40.0% | |
AGTTCAGATACAGCAGATGT+TGG | - | chr5.4:4805417-4805436 | MS.gene019289:intron | 40.0% | |
ATCACCATGAGAATTCCTGA+TGG | + | chr5.4:4803164-4803183 | None:intergenic | 40.0% | |
ATCCTGTTAAGCAGAGAAAC+AGG | + | chr5.4:4803820-4803839 | None:intergenic | 40.0% | |
CACAATTGCGTCATTGAAGA+AGG | - | chr5.4:4805693-4805712 | MS.gene019289:intron | 40.0% | |
CCTCAGGAAGCAAATTGTAA+AGG | - | chr5.4:4804247-4804266 | MS.gene019289:CDS | 40.0% | |
CGAAAATCAGAAGAAGCTTG+GGG | - | chr5.4:4805468-4805487 | MS.gene019289:intron | 40.0% | |
CGGTTCAAGATGGAAATTGT+CGG | - | chr5.4:4802867-4802886 | MS.gene019289:intron | 40.0% | |
CTAGCTTATGTACAAGCTTG+TGG | + | chr5.4:4804853-4804872 | None:intergenic | 40.0% | |
CTCCTCTAATCCTCTGATAT+GGG | + | chr5.4:4805038-4805057 | None:intergenic | 40.0% | |
CTCGAAAATCAGAAGAAGCT+TGG | - | chr5.4:4805466-4805485 | MS.gene019289:intron | 40.0% | |
GAATCTGGAAAAGGAACTCA+AGG | - | chr5.4:4804961-4804980 | MS.gene019289:CDS | 40.0% | |
GACACTCTTGAGGTTTCTTA+CGG | + | chr5.4:4806803-4806822 | None:intergenic | 40.0% | |
GAGGAGATGAACACTCATAT+TGG | + | chr5.4:4804907-4804926 | None:intergenic | 40.0% | |
GATAGATTGCGTACTGAGTA+AGG | + | chr5.4:4803714-4803733 | None:intergenic | 40.0% | |
GCGTCTACAGAAAAATCTAG+TGG | - | chr5.4:4805297-4805316 | MS.gene019289:intron | 40.0% | |
GCTTGGGGAACAAGTTAATA+GGG | - | chr5.4:4805483-4805502 | MS.gene019289:CDS | 40.0% | |
GTACTAGAAACCCATATCAG+AGG | - | chr5.4:4805025-4805044 | MS.gene019289:CDS | 40.0% | |
TAGTTGACTGAAGCTCTTCT+TGG | + | chr5.4:4805342-4805361 | None:intergenic | 40.0% | |
TATTATCAGGATCCGAAGAC+TGG | - | chr5.4:4802920-4802939 | MS.gene019289:intron | 40.0% | |
TCAAGATGGAAATTGTCGGT+GGG | - | chr5.4:4802871-4802890 | MS.gene019289:intron | 40.0% | |
TCAAGGAACCAATTCAGCAA+CGG | - | chr5.4:4803536-4803555 | MS.gene019289:CDS | 40.0% | |
TCAATAGTTCCTGGTGACAT+TGG | - | chr5.4:4802815-4802834 | MS.gene019289:CDS | 40.0% | |
TCAATGTCATTCATAGCAGC+AGG | + | chr5.4:4804929-4804948 | None:intergenic | 40.0% | |
TCACCATGAGAATTCCTGAT+GGG | + | chr5.4:4803163-4803182 | None:intergenic | 40.0% | |
TCATTTGCATTGAGAGTCTC+TGG | + | chr5.4:4805216-4805235 | None:intergenic | 40.0% | |
TGAGTCTCTCAATCTCCAAT+GGG | + | chr5.4:4804169-4804188 | None:intergenic | 40.0% | |
TGTTTAACTGTTCCTGCAGT+TGG | + | chr5.4:4804883-4804902 | None:intergenic | 40.0% | |
TTATCAAAAGCTAGCGCAGT+CGG | - | chr5.4:4803076-4803095 | MS.gene019289:CDS | 40.0% | |
TTCAAGATGGAAATTGTCGG+TGG | - | chr5.4:4802870-4802889 | MS.gene019289:intron | 40.0% | |
TTCTCAAAATGCCCTTTCCA+AGG | - | chr5.4:4804124-4804143 | MS.gene019289:CDS | 40.0% | |
TTGAGTCTCTCAATCTCCAA+TGG | + | chr5.4:4804170-4804189 | None:intergenic | 40.0% | |
TTGGGAACTTTCCTTGGAAA+GGG | + | chr5.4:4804138-4804157 | None:intergenic | 40.0% | |
TTGTCTTTCACCTTCTACCT+CGG | + | chr5.4:4806767-4806786 | None:intergenic | 40.0% | |
TTTCTCAGTCCAATTTCGCA+GGG | + | chr5.4:4803930-4803949 | None:intergenic | 40.0% | |
! | AGCATTGGATGATCTTGTCA+AGG | - | chr5.4:4804679-4804698 | MS.gene019289:CDS | 40.0% |
! | CAGCATTGAGAAGAGATTCA+GGG | - | chr5.4:4805933-4805952 | MS.gene019289:CDS | 40.0% |
! | CCTTTACAATTTGCTTCCTG+AGG | + | chr5.4:4804250-4804269 | None:intergenic | 40.0% |
! | GCCATTTCTTTTGAATGCTG+AGG | + | chr5.4:4806030-4806049 | None:intergenic | 40.0% |
! | TTCCTGTTTCTCTGCTTAAC+AGG | - | chr5.4:4803815-4803834 | MS.gene019289:CDS | 40.0% |
! | TTCTTTTGAATGCTGAGGAC+TGG | + | chr5.4:4806025-4806044 | None:intergenic | 40.0% |
! | TTTTCTCAGTCCAATTTCGC+AGG | + | chr5.4:4803931-4803950 | None:intergenic | 40.0% |
!! | AAACCTCAAGAGTGTCCATA+AGG | - | chr5.4:4806807-4806826 | MS.gene019289:CDS | 40.0% |
!! | AACCTCAAGAGTGTCCATAA+GGG | - | chr5.4:4806808-4806827 | MS.gene019289:CDS | 40.0% |
!! | AACTGGAACAAACTGGTTTG+TGG | + | chr5.4:4803970-4803989 | None:intergenic | 40.0% |
!! | AAGAAATGGATTGGAACACG+CGG | - | chr5.4:4806624-4806643 | MS.gene019289:intron | 40.0% |
!! | ATTGGTTCTGTTAGGTTCTG+AGG | - | chr5.4:4802456-4802475 | MS.gene019289:CDS | 40.0% |
!! | TTGGTGTTGTCAATAGTTCC+TGG | - | chr5.4:4802806-4802825 | MS.gene019289:CDS | 40.0% |
!! | TTGGTTCTGTTAGGTTCTGA+GGG | - | chr5.4:4802457-4802476 | MS.gene019289:CDS | 40.0% |
!!! | CTTCTGATTTTCGAGTTGCA+TGG | + | chr5.4:4805461-4805480 | None:intergenic | 40.0% |
AAAGGAAAGCAAAAGAGGGC+AGG | - | chr5.4:4804265-4804284 | MS.gene019289:CDS | 45.0% | |
AAATTGTCGGTGGGAGAATC+CGG | - | chr5.4:4802880-4802899 | MS.gene019289:intron | 45.0% | |
AACAGGTCACAGTTGGAAAG+CGG | - | chr5.4:4804395-4804414 | MS.gene019289:CDS | 45.0% | |
AATGTACAGGAGGGACAAAG+AGG | - | chr5.4:4804769-4804788 | MS.gene019289:CDS | 45.0% | |
ACGATGCCAAAGTGAGAAAC+AGG | - | chr5.4:4804378-4804397 | MS.gene019289:CDS | 45.0% | |
AGCAGCATTTGGAGATTCTG+CGG | + | chr5.4:4804003-4804022 | None:intergenic | 45.0% | |
AGTGAGAAACAGGTCACAGT+TGG | - | chr5.4:4804388-4804407 | MS.gene019289:CDS | 45.0% | |
ATGGGAAGAGAGACATGAGA+GGG | + | chr5.4:4803145-4803164 | None:intergenic | 45.0% | |
ATGTCATTCATAGCAGCAGG+AGG | + | chr5.4:4804926-4804945 | None:intergenic | 45.0% | |
CAGAGGATTAGAGGAGGAAA+TGG | - | chr5.4:4805042-4805061 | MS.gene019289:CDS | 45.0% | |
CCATATCAGAGGATTAGAGG+AGG | - | chr5.4:4805036-4805055 | MS.gene019289:CDS | 45.0% | |
CCTCCTCTAATCCTCTGATA+TGG | + | chr5.4:4805039-4805058 | None:intergenic | 45.0% | |
CCTGAATCTCTTCTCAATGC+TGG | + | chr5.4:4805935-4805954 | None:intergenic | 45.0% | |
CTCAAATTTGCCGAGGTAGA+AGG | - | chr5.4:4806754-4806773 | MS.gene019289:intron | 45.0% | |
CTCAAGCAAGTGTGTCTCTT+TGG | + | chr5.4:4804717-4804736 | None:intergenic | 45.0% | |
CTTCCCATCAGGAATTCTCA+TGG | - | chr5.4:4803157-4803176 | MS.gene019289:CDS | 45.0% | |
CTTGGGAACTTTCCTTGGAA+AGG | + | chr5.4:4804139-4804158 | None:intergenic | 45.0% | |
GACCGAATTGTCGTCATTGA+AGG | - | chr5.4:4806669-4806688 | MS.gene019289:intron | 45.0% | |
GAGAAAGCTACGGTTCAAGA+TGG | - | chr5.4:4802857-4802876 | MS.gene019289:intron | 45.0% | |
GAGCCATAACTGGAACAAAC+TGG | + | chr5.4:4803977-4803996 | None:intergenic | 45.0% | |
GAGTCTCTCAATCTCCAATG+GGG | + | chr5.4:4804168-4804187 | None:intergenic | 45.0% | |
GCCCTTCAAATTGGTTGTTC+AGG | - | chr5.4:4806561-4806580 | MS.gene019289:intron | 45.0% | |
GGAACTCCAGAGCAGAATTA+TGG | - | chr5.4:4806305-4806324 | MS.gene019289:intron | 45.0% | |
GTCAACTAAAGCCGATTACG+AGG | - | chr5.4:4805354-4805373 | MS.gene019289:intron | 45.0% | |
GTTGATACTCCCTGCGAAAT+TGG | - | chr5.4:4803918-4803937 | MS.gene019289:CDS | 45.0% | |
TACAGCTGAAAGGCTTCAAG+AGG | - | chr5.4:4805186-4805205 | MS.gene019289:CDS | 45.0% | |
TAGACGCAGTTCACTTGCTT+CGG | + | chr5.4:4805284-4805303 | None:intergenic | 45.0% | |
TATCAAAAGCTAGCGCAGTC+GGG | - | chr5.4:4803077-4803096 | MS.gene019289:CDS | 45.0% | |
TATGGAGCTGGAGAACAAAG+TGG | - | chr5.4:4806323-4806342 | MS.gene019289:intron | 45.0% | |
TCAGAGCTCGGGTTAAGTAT+GGG | - | chr5.4:4804086-4804105 | MS.gene019289:CDS | 45.0% | |
TCAGATACAGCAGATGTTGG+TGG | - | chr5.4:4805420-4805439 | MS.gene019289:intron | 45.0% | |
TCTGCTCCAACATTTCTTCG+AGG | + | chr5.4:4804550-4804569 | None:intergenic | 45.0% | |
TGCGTCATTGAAGAAGGAAG+CGG | - | chr5.4:4805699-4805718 | MS.gene019289:intron | 45.0% | |
TGTATCGCGTTCGTGTCTAT+TGG | + | chr5.4:4804597-4804616 | None:intergenic | 45.0% | |
TTCCAAGGAAAGTTCCCAAG+AGG | - | chr5.4:4804139-4804158 | MS.gene019289:CDS | 45.0% | |
! | CCAGCATTGAGAAGAGATTC+AGG | - | chr5.4:4805932-4805951 | MS.gene019289:CDS | 45.0% |
! | CTGTGACCTGTTTCTCACTT+TGG | + | chr5.4:4804387-4804406 | None:intergenic | 45.0% |
! | GAGGCATTAACAGCAGCATT+TGG | + | chr5.4:4804014-4804033 | None:intergenic | 45.0% |
! | TCAAGTTCTGATGACAGCTC+TGG | - | chr5.4:4803894-4803913 | MS.gene019289:CDS | 45.0% |
!! | CAAAGCTGAACTTGCTGCTT+TGG | - | chr5.4:4804187-4804206 | MS.gene019289:CDS | 45.0% |
!! | GAACAAACTGGTTTGTGGTG+GGG | + | chr5.4:4803965-4803984 | None:intergenic | 45.0% |
!! | GGAACAAACTGGTTTGTGGT+GGG | + | chr5.4:4803966-4803985 | None:intergenic | 45.0% |
!! | TAAATCATGCATCGGTGTCG+AGG | + | chr5.4:4804033-4804052 | None:intergenic | 45.0% |
!! | TGGAACAAACTGGTTTGTGG+TGG | + | chr5.4:4803967-4803986 | None:intergenic | 45.0% |
AAGAGGGCAGGATCTCATGA+AGG | - | chr5.4:4804277-4804296 | MS.gene019289:CDS | 50.0% | |
ACAATCAGGGGTGGATGCAT+TGG | - | chr5.4:4802787-4802806 | MS.gene019289:CDS | 50.0% | |
ACATGGAACTACAGACCCTC+AGG | - | chr5.4:4804231-4804250 | MS.gene019289:CDS | 50.0% | |
AGAGACATGAGAGGGCTTTG+TGG | + | chr5.4:4803137-4803156 | None:intergenic | 50.0% | |
AGCCCTTATGGACACTCTTG+AGG | + | chr5.4:4806813-4806832 | None:intergenic | 50.0% | |
ATCAAAAGCTAGCGCAGTCG+GGG | - | chr5.4:4803078-4803097 | MS.gene019289:CDS | 50.0% | |
CAGGTCTTTCCACAAACGCA+TGG | - | chr5.4:4804355-4804374 | MS.gene019289:CDS | 50.0% | |
CATTTCTTCGAGGTCCTGCA+CGG | + | chr5.4:4804540-4804559 | None:intergenic | 50.0% | |
CCAGAGCAGAATTATGGAGC+TGG | - | chr5.4:4806311-4806330 | MS.gene019289:intron | 50.0% | |
CCAGCTCCATAATTCTGCTC+TGG | + | chr5.4:4806314-4806333 | None:intergenic | 50.0% | |
CTCAGAGCTCGGGTTAAGTA+TGG | - | chr5.4:4804085-4804104 | MS.gene019289:CDS | 50.0% | |
CTCATGTCTCTCTTCCCATC+AGG | - | chr5.4:4803146-4803165 | MS.gene019289:CDS | 50.0% | |
CTGTATCGCCGTTGCTGAAT+TGG | + | chr5.4:4803547-4803566 | None:intergenic | 50.0% | |
GATGGGAAGAGAGACATGAG+AGG | + | chr5.4:4803146-4803165 | None:intergenic | 50.0% | |
GCAGGACCTCGAAGAAATGT+TGG | - | chr5.4:4804541-4804560 | MS.gene019289:CDS | 50.0% | |
GGACGCAACCAACTTTCTGA+TGG | - | chr5.4:4805964-4805983 | MS.gene019289:CDS | 50.0% | |
GGTCTTTCGCAATGCTTCCT+CGG | + | chr5.4:4805149-4805168 | None:intergenic | 50.0% | |
TGCCTCTTGGGAACTTTCCT+TGG | + | chr5.4:4804144-4804163 | None:intergenic | 50.0% | |
TGCTTCGGTCAATGCTCTCA+TGG | + | chr5.4:4805269-4805288 | None:intergenic | 50.0% | |
! | CACGCGGACAATAGTCTTAG+TGG | - | chr5.4:4806640-4806659 | MS.gene019289:intron | 50.0% |
! | TCAGGTGTTACAATCAGGGG+TGG | - | chr5.4:4802778-4802797 | MS.gene019289:CDS | 50.0% |
! | TCGTCATCTAGCTCAGAGCT+CGG | - | chr5.4:4804074-4804093 | MS.gene019289:CDS | 50.0% |
! | TGAATTGGTTCTTGCCGTGC+AGG | - | chr5.4:4804523-4804542 | MS.gene019289:CDS | 50.0% |
!! | GTTGGTCTTCCAATGTCACC+AGG | + | chr5.4:4802827-4802846 | None:intergenic | 50.0% |
CTCCAATGGGGATGCCTCTT+GGG | + | chr5.4:4804156-4804175 | None:intergenic | 55.0% | |
GCACATGGATGTGTCGGACA+TGG | - | chr5.4:4804214-4804233 | MS.gene019289:CDS | 55.0% | |
GCTAGAGCAAAGCCAACTGC+AGG | - | chr5.4:4804868-4804887 | MS.gene019289:CDS | 55.0% | |
GGAACTCAAGGAGCAGTCAG+AGG | - | chr5.4:4804973-4804992 | MS.gene019289:CDS | 55.0% | |
GGAGCTGGAGAACAAAGTGG+AGG | - | chr5.4:4806326-4806345 | MS.gene019289:intron | 55.0% | |
TCTCCAATGGGGATGCCTCT+TGG | + | chr5.4:4804157-4804176 | None:intergenic | 55.0% | |
TGGCATCGTCCATGCGTTTG+TGG | + | chr5.4:4804367-4804386 | None:intergenic | 55.0% | |
TTCGCAATGCTTCCTCGGCT+TGG | + | chr5.4:4805144-4805163 | None:intergenic | 55.0% | |
! | CGTCATCTAGCTCAGAGCTC+GGG | - | chr5.4:4804075-4804094 | MS.gene019289:CDS | 55.0% |
!! | CAATGCTTCCTCGGCTTGGA+TGG | + | chr5.4:4805140-4805159 | None:intergenic | 55.0% |
!! | CTGAACTTGCTGCTTTGGCG+AGG | - | chr5.4:4804192-4804211 | MS.gene019289:CDS | 55.0% |
!! | TTCCCAAGAGGCATCCCCAT+TGG | - | chr5.4:4804151-4804170 | MS.gene019289:CDS | 55.0% |
GCAAAGAGCCATCCAAGCCG+AGG | - | chr5.4:4805129-4805148 | MS.gene019289:CDS | 60.0% | |
GGCGAGGCACATGGATGTGT+CGG | - | chr5.4:4804208-4804227 | MS.gene019289:CDS | 60.0% | |
TCTGCGGCACGAGCCATAAC+TGG | + | chr5.4:4803987-4804006 | None:intergenic | 60.0% | |
!! | TGCTGCTTTGGCGAGGCACA+TGG | - | chr5.4:4804199-4804218 | MS.gene019289:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5.4 | gene | 4802241 | 4806834 | 4802241 | ID=MS.gene019289 |
chr5.4 | mRNA | 4802241 | 4806834 | 4802241 | ID=MS.gene019289.t1;Parent=MS.gene019289 |
chr5.4 | exon | 4806757 | 4806834 | 4806757 | ID=MS.gene019289.t1.exon1;Parent=MS.gene019289.t1 |
chr5.4 | CDS | 4806757 | 4806834 | 4806757 | ID=cds.MS.gene019289.t1;Parent=MS.gene019289.t1 |
chr5.4 | exon | 4806093 | 4806293 | 4806093 | ID=MS.gene019289.t1.exon2;Parent=MS.gene019289.t1 |
chr5.4 | CDS | 4806093 | 4806293 | 4806093 | ID=cds.MS.gene019289.t1;Parent=MS.gene019289.t1 |
chr5.4 | exon | 4805880 | 4806002 | 4805880 | ID=MS.gene019289.t1.exon3;Parent=MS.gene019289.t1 |
chr5.4 | CDS | 4805880 | 4806002 | 4805880 | ID=cds.MS.gene019289.t1;Parent=MS.gene019289.t1 |
chr5.4 | exon | 4805705 | 4805748 | 4805705 | ID=MS.gene019289.t1.exon4;Parent=MS.gene019289.t1 |
chr5.4 | CDS | 4805705 | 4805748 | 4805705 | ID=cds.MS.gene019289.t1;Parent=MS.gene019289.t1 |
chr5.4 | exon | 4805480 | 4805588 | 4805480 | ID=MS.gene019289.t1.exon5;Parent=MS.gene019289.t1 |
chr5.4 | CDS | 4805480 | 4805588 | 4805480 | ID=cds.MS.gene019289.t1;Parent=MS.gene019289.t1 |
chr5.4 | exon | 4802995 | 4805238 | 4802995 | ID=MS.gene019289.t1.exon6;Parent=MS.gene019289.t1 |
chr5.4 | CDS | 4802995 | 4805238 | 4802995 | ID=cds.MS.gene019289.t1;Parent=MS.gene019289.t1 |
chr5.4 | exon | 4802698 | 4802835 | 4802698 | ID=MS.gene019289.t1.exon7;Parent=MS.gene019289.t1 |
chr5.4 | CDS | 4802698 | 4802835 | 4802698 | ID=cds.MS.gene019289.t1;Parent=MS.gene019289.t1 |
chr5.4 | exon | 4802241 | 4802492 | 4802241 | ID=MS.gene019289.t1.exon8;Parent=MS.gene019289.t1 |
chr5.4 | CDS | 4802241 | 4802492 | 4802241 | ID=cds.MS.gene019289.t1;Parent=MS.gene019289.t1 |
Gene Sequence |
Protein sequence |